pre-miRNA Information
pre-miRNA hsa-mir-4524a   
Genomic Coordinates chr17: 69099564 - 69099632
Description Homo sapiens miR-4524a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4524a-5p
Sequence 6| AUAGCAGCAUGAACCUGUCUCA |27
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1322445998 8 dbSNP
rs1350790266 13 dbSNP
rs1263495678 21 dbSNP
Putative Targets

Gene Information
Gene Symbol CYP26B1   
Synonyms CYP26A2, P450RAI-2, P450RAI2, RHFCA
Description cytochrome P450 family 26 subfamily B member 1
Transcript NM_019885   
Expression
Putative miRNA Targets on CYP26B1
3'UTR of CYP26B1
(miRNA target sites are highlighted)
>CYP26B1|NM_019885|3'UTR
   1 CCCAAGACCCACCCGCCTCAGCCCAGCCCAGGCAGCGGGGTGGTGGTTGTGGGAGGTAGAAACCTGTGTGTGGGAGGGGG
  81 CCGGAACGGGGAGGGCGAGTGGCCCCCATACTTGCCCTCCCTTGCTCCCCCTCCCTGGCAAACCCTACCCAAAGCCAGTG
 161 GGCCCCATTCCTAGGGCTGGGCTCCCCTTCTGGCTCCAGCTTCCCTCCAGCCACTCCCCATTTACCATCAGCTCAGCCCC
 241 TGGGAAGGGCGTGGCAGGGGCTCTGCATGCCCGTGACAGTGTTAGGTGTCAGCGCGTGCTACAGTGTTTTTGTGATGTTC
 321 TGAACTGCTCCCTTCCCTCCGTTCCTTTCGGACCCTTTTAGCTGGGGTTGGGGGACGGGAAGAGCCGTGCCCCCTTGGGC
 401 GCACTCTTCAGCGTCTCCTCCTCCTGCGCCCCCACTGCGTCTGCCCAGGAACAGCATCCTGGGTAGCAGAACAGGAGTCA
 481 ACCTTGGCGGGGCGGGGGCTGCGTCCAACCTGGAGATTGCCCTTCCCTATGCCACGGTTCCCACCCTCCCTCACCAGTTT
 561 GGACAATTTGAAATTACCTATTGCTGCTACTTGTTCTGTCCTCTGACCTTGGGGCAAAGGAGCCCCAGGCCCTGTCTCCC
 641 CAGCATCCTCCCTGGTGGCCCTGGGCAGGTGCACTGACACCCCCACCTTCCCATCCCCTGCTGAACCAGGCCCTGTTACA
 721 CACAGCCGCCTAAGGCCCGCGGCTCATGTGCTGCCCGCCCCCATATTTATTCACTGATAGAGAATCTTGGGGATGCTGGG
 801 GTCTGGAGTGAACATCTCCTCCCCTTCATGCCCTAGCCTGTGTTCTAGCTGTCCTGGCGAGACTTCTGTGAGTGAAGAGG
 881 AAGGGGTCTCTGGTCAAACCCAGCCCCCAGGGCCTAGGGTTGAAAGCCTTCCCCGGCTCCGGGCATTATTTGGGTTTAAT
 961 CTCGGAGCCTCACTCCTGGACTGAAGTCCGGTGCCTCTGCCTTATCCCTGGTGGAGATGGAATGTGGCCCATTGCCTCCT
1041 CCCTCTCCTGTCAAAAACCCTGATCAGGTAGATTTGGAGGCGGCCACGATTTCCTGTTTGGCCCCTGTTCACCCCAGTGC
1121 ACTGGCCCTGACTCCAGGCGTGAGTATGGGGAAGGATACGGGTTCTTCTGACGGGGAGCAAGGGCCTCCGTCTTCCCTTC
1201 CTTAACTCTCCCCCTTTGCCCTCCGCCCTGAAAAAGGTGTCCTTGAAGTCCCTTCCACCTCTATGCCACTGTCTGCTTAG
1281 CCCAGCTCAGGGGTGGGGAAGAGGCGAAAGCGTGGGGGAGGTGAGCGCAGCGGCAGTTCTGCCTCGGAGCTGATTGCAGG
1361 GCCCTGTGTGGTCTCCGGACAGCTGCGGGAAGGCTGCCGCAGCTGAAGCTGAAGAGGCGGCTACGTGCGGTTTGTCAGGG
1441 GGATTGGGTTGAAAACTGGCCAGTCGGGATGACTGGGTGAAAGAGGAGTAGCTCCTGCCACTGGCGTTTTGAGTGTTGGC
1521 AATTTGGGATGCCTCCTGGGGAAGGTTTCCGGGCGTTTGGTGAGTCTCTAGATTTTTCCTTGCTTTCTGTGTTTATTGGT
1601 TTTTGATGTTGTAAAAGCAATGAATCCCCTTTACAAGAAAATCGAAAACACAGAAGAATGAAGGACATGCCAGTCCCCGA
1681 TCGCTGCTGTGAGCACCTCAGTGGCTCCCTCAGACCAGATCCCGTAGGCAGCCCCACAGACCGACCCTGACCCCACTCAC
1761 AGCCACCCTGAAGATAGACTATAGGAACGGGCCCATACCACACAGACTGCTCTCCAATCCCTGAGTCTCAGATGTTTCAT
1841 TTATTTCCTACTTTTCCACTACTAAAAAACAGTGTGGAATAGACATTATTGGCAAAATTGCTCATCCCTAATCCTGAAAA
1921 ACAGGCCAGAATGGGTAAAGACTTGTCAAAGCTTGCAACATAGCTACATGGTGCACCCGGACCTGTACCCCCTCCCCCCA
2001 ACACAAAACCAGTGTCTGGGAGGTTCATTTTCCTTTAAACTGATCCAGCTGGCCCTGAACCAATTGTTTTTGACTGAGTA
2081 TCTAGGAGAGCAGTAAGTGGAACTTCAGACAAGCCCACTGGGTCTGGTCCAGGTGAGGGGCAGGGGGCATGGGGCTGGGA
2161 GGTCTCAGGGGCCTTCCCTGGGGGTGGCCAGCCTGGTAGGGGGCAGAGAAGGAAAAGCTGAGGGGGGTCCCTGTGAGGGA
2241 GGAAAGAAGGATCATTTGCCCCGCTGGGTCTCAAAGGCAGTGAGAAGAGAGCTGAAGAAAGCTCTGGCTGGCTGACAGGA
2321 TCCCTGTGTTGTAATTGGTCCCTCCTTTCAGCTCTCTAGTGAGATGCCCGTGTCTGTGCGTGTGCGTGTGTGTTTCATAC
2401 AGCTAGCATTAGATGGGTGATGTTTCTTACTTATCATCCCTAACTATTGCAACTTGACCTTAAAAAGACAAAACCCCACA
2481 AAACTCTTCCTGCCACGGGCTTGCAGATTGAAGCACTTTCGATGTTGGGCGCTGGCGTTTGTGTTCTGGGCACCACCGTG
2561 ACCCTGCCCAGATGGCTATAATATTATTTTATACACAAACCTTTTTTTTCATAAATGTTATAATTTTGTGTCTGTCTTTA
2641 TAAACTATTATAAGTACTATTTTTGTTATAATTCAAAATAGATATTTAGTATAAAGTTTTTGCTGTTAAATATTTGTTAT
2721 TTAGTAAAATATGAATTTTGCTCTATTGTAAACATGGTTCAAAATATTAATATGTTTTTATCACAGTCGTTTTAATATTG
2801 AAAAAGCACTTGTGTGTTTTGTTTTGATATGAAACTGGTACCGTGTGAGTGTTTTTGCTGTCGTGGTTTTAATCTGTATA
2881 TAATATTCCATGTTGCATATTAAAAACATGAATGTTGTGCATTTTGTGATTTTGGAAATACTCAATGTGGCTCTTCTATA
2961 GGCTTCTAGAATAAACCGTGGGGACCCGCAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acUCUGUCCAAGU----------ACGACGAUa 5'
            :||||  || |          |||||||| 
Target 5' ttGGACAATTTGAAATTACCTATTGCTGCTAc 3'
559 - 590 146.00 -10.20
2
miRNA  3' acucugUCCAAGUACGACGAUa 5'
                | |||: |||||:|| 
Target 5' agtataAAGTTTTTGCTGTTAa 3'
2688 - 2709 144.00 -10.40
3
miRNA  3' acUCUGU-C---CAAG---UA-CGACGAUa 5'
            :|||| |   || |   || ||||||: 
Target 5' aaGGACATGCCAGTCCCCGATCGCTGCTGt 3'
1661 - 1690 132.00 -14.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN15666729 7 COSMIC
COSN30110328 8 COSMIC
COSN14006182 15 COSMIC
COSN6684392 44 COSMIC
COSN20064275 87 COSMIC
COSN31524533 131 COSMIC
COSN16415036 175 COSMIC
COSN9385993 294 COSMIC
COSN20074421 380 COSMIC
COSN31959775 382 COSMIC
COSN26115756 428 COSMIC
COSN31542624 459 COSMIC
COSN7082347 493 COSMIC
COSN30544086 499 COSMIC
COSN7082346 503 COSMIC
COSN22927047 527 COSMIC
COSN31521185 591 COSMIC
COSN31550745 730 COSMIC
COSN30234028 935 COSMIC
COSN15859715 939 COSMIC
COSN31488885 1010 COSMIC
COSN9385992 1026 COSMIC
COSN22735096 1082 COSMIC
COSN31585825 1088 COSMIC
COSN31522110 1140 COSMIC
COSN31484974 1159 COSMIC
COSN31566522 1224 COSMIC
COSN8894828 1287 COSMIC
COSN31517252 1327 COSMIC
COSN4806529 1409 COSMIC
COSN21818178 1693 COSMIC
COSN1242198 1754 COSMIC
COSN28198326 1825 COSMIC
COSN20096857 2374 COSMIC
COSN18771244 2391 COSMIC
COSN5132088 2452 COSMIC
COSN20096856 2609 COSMIC
COSN31528090 2642 COSMIC
COSN31590309 2653 COSMIC
COSN31589434 2657 COSMIC
COSN31549403 2699 COSMIC
COSN31538327 2800 COSMIC
COSN8609544 2826 COSMIC
COSN31551038 2859 COSMIC
COSN15660861 2907 COSMIC
COSN28769600 2986 COSMIC
rs2241059 44 GWAS
rs707718 2907 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs766151107 1 dbSNP
rs1267399227 2 dbSNP
rs1212576157 4 dbSNP
rs892407164 9 dbSNP
rs760345819 10 dbSNP
rs1269869325 11 dbSNP
rs369986598 12 dbSNP
rs1349668927 13 dbSNP
rs376643612 14 dbSNP
rs759138854 15 dbSNP
rs761864469 15 dbSNP
rs180851816 17 dbSNP
rs1237118602 18 dbSNP
rs1333099692 19 dbSNP
rs899635377 20 dbSNP
rs541407471 23 dbSNP
rs1440208581 24 dbSNP
rs774130226 25 dbSNP
rs1039473686 34 dbSNP
rs759561625 36 dbSNP
rs556645871 37 dbSNP
rs1384692182 38 dbSNP
rs1157231025 39 dbSNP
rs778170378 40 dbSNP
rs1377793249 41 dbSNP
rs537630028 42 dbSNP
rs2241059 44 dbSNP
rs1249412417 45 dbSNP
rs1189134422 46 dbSNP
rs1446401812 51 dbSNP
rs1483639845 55 dbSNP
rs1019373578 56 dbSNP
rs1007530726 58 dbSNP
rs1347251567 65 dbSNP
rs1307138950 72 dbSNP
rs1393176805 77 dbSNP
rs912299293 81 dbSNP
rs753520747 82 dbSNP
rs889219257 83 dbSNP
rs764691422 87 dbSNP
rs763591399 88 dbSNP
rs1371849687 96 dbSNP
rs1446101335 96 dbSNP
rs775113173 97 dbSNP
rs963544549 99 dbSNP
rs1365293612 108 dbSNP
rs1388234788 114 dbSNP
rs879080089 115 dbSNP
rs548788241 116 dbSNP
rs533791371 117 dbSNP
rs1276920921 128 dbSNP
rs1342923004 129 dbSNP
rs1222477103 131 dbSNP
rs1264143703 132 dbSNP
rs558930155 134 dbSNP
rs917477633 139 dbSNP
rs769379644 140 dbSNP
rs1418984648 142 dbSNP
rs1267643221 144 dbSNP
rs1448554138 147 dbSNP
rs1186249705 169 dbSNP
rs1378357307 174 dbSNP
rs1449528052 176 dbSNP
rs1055884982 180 dbSNP
rs937002773 181 dbSNP
rs1164005654 182 dbSNP
rs1347978267 183 dbSNP
rs1459274649 184 dbSNP
rs1161229274 200 dbSNP
rs1293845796 203 dbSNP
rs1387607693 206 dbSNP
rs925720680 218 dbSNP
rs1433220431 220 dbSNP
rs372967410 227 dbSNP
rs978470988 237 dbSNP
rs566441456 238 dbSNP
rs370716089 240 dbSNP
rs1254875090 250 dbSNP
rs913071877 251 dbSNP
rs551083754 253 dbSNP
rs956670938 260 dbSNP
rs376847318 261 dbSNP
rs1032221293 267 dbSNP
rs965690194 269 dbSNP
rs562424282 272 dbSNP
rs986562024 273 dbSNP
rs1180729223 278 dbSNP
rs1411562049 280 dbSNP
rs1425535636 283 dbSNP
rs1165357019 290 dbSNP
rs763896328 293 dbSNP
rs550613382 294 dbSNP
rs1027775074 295 dbSNP
rs868051196 296 dbSNP
rs890908710 298 dbSNP
rs897877998 302 dbSNP
rs1447423964 309 dbSNP
rs1046802267 312 dbSNP
rs1259441817 322 dbSNP
rs1381393343 325 dbSNP
rs1229465006 326 dbSNP
rs929638150 331 dbSNP
rs1327541853 337 dbSNP
rs754632729 339 dbSNP
rs1317528235 340 dbSNP
rs1015113436 341 dbSNP
rs529018211 343 dbSNP
rs1208960007 344 dbSNP
rs561417359 345 dbSNP
rs1483943882 347 dbSNP
rs1188586584 348 dbSNP
rs1056035142 349 dbSNP
rs776279469 350 dbSNP
rs770501250 354 dbSNP
rs145347737 360 dbSNP
rs1358404711 361 dbSNP
rs557595070 362 dbSNP
rs116045368 368 dbSNP
rs945809943 376 dbSNP
rs141543767 377 dbSNP
rs746817061 386 dbSNP
rs1032275200 387 dbSNP
rs943869079 389 dbSNP
rs1412087269 390 dbSNP
rs911159045 394 dbSNP
rs55707322 397 dbSNP
rs147629953 400 dbSNP
rs758309984 401 dbSNP
rs1027664825 409 dbSNP
rs973372084 412 dbSNP
rs1482062018 413 dbSNP
rs890927421 417 dbSNP
rs1486506150 418 dbSNP
rs765765249 426 dbSNP
rs962137879 427 dbSNP
rs1189712619 428 dbSNP
rs114394163 429 dbSNP
rs73942508 430 dbSNP
rs1167982018 431 dbSNP
rs573799770 438 dbSNP
rs762527888 439 dbSNP
rs750902279 462 dbSNP
rs1330944762 463 dbSNP
rs1434681754 464 dbSNP
rs1272751156 473 dbSNP
rs1369226066 474 dbSNP
rs1234546234 475 dbSNP
rs778857169 476 dbSNP
rs555102568 481 dbSNP
rs1045314716 484 dbSNP
rs369926358 488 dbSNP
rs756123412 489 dbSNP
rs945693630 493 dbSNP
rs891571328 494 dbSNP
rs1169011393 499 dbSNP
rs1394604142 501 dbSNP
rs79240472 502 dbSNP
rs943902687 503 dbSNP
rs566429247 511 dbSNP
rs979439046 515 dbSNP
rs985662781 517 dbSNP
rs868793264 522 dbSNP
rs576549190 529 dbSNP
rs117806979 533 dbSNP
rs919816973 535 dbSNP
rs973422992 536 dbSNP
rs1025456602 540 dbSNP
rs1212377372 541 dbSNP
rs1208407694 548 dbSNP
rs962024148 554 dbSNP
rs1246356889 556 dbSNP
rs556845549 557 dbSNP
rs962476868 559 dbSNP
rs992921931 560 dbSNP
rs1198233137 561 dbSNP
rs1419109090 563 dbSNP
rs960362023 566 dbSNP
rs1319481955 569 dbSNP
rs1034534496 570 dbSNP
rs767769369 577 dbSNP
rs1383434135 581 dbSNP
rs1318460700 589 dbSNP
rs539049371 598 dbSNP
rs1445815440 600 dbSNP
rs1285867177 605 dbSNP
rs1335249624 609 dbSNP
rs757484692 614 dbSNP
rs184701552 618 dbSNP
rs968961704 622 dbSNP
rs1301092268 645 dbSNP
rs543589926 659 dbSNP
rs1371090839 664 dbSNP
rs1440761358 667 dbSNP
rs1190241611 670 dbSNP
rs1258754552 672 dbSNP
rs1472488952 673 dbSNP
rs1157331455 675 dbSNP
rs1013807268 681 dbSNP
rs1009887495 682 dbSNP
rs891455100 684 dbSNP
rs1455057249 699 dbSNP
rs1041232735 711 dbSNP
rs1007984970 712 dbSNP
rs1158780137 715 dbSNP
rs546261257 716 dbSNP
rs896717102 725 dbSNP
rs764597740 727 dbSNP
rs889504974 728 dbSNP
rs1314652779 730 dbSNP
rs1049598845 735 dbSNP
rs931114469 738 dbSNP
rs763432605 739 dbSNP
rs149961285 740 dbSNP
rs1168156554 745 dbSNP
rs935497068 748 dbSNP
rs1255572251 750 dbSNP
rs1342973385 751 dbSNP
rs371219985 751 dbSNP
rs925403127 756 dbSNP
rs1483041439 757 dbSNP
rs1180608171 758 dbSNP
rs1254497044 764 dbSNP
rs1420033686 767 dbSNP
rs1182096212 774 dbSNP
rs1043755676 787 dbSNP
rs1464132370 789 dbSNP
rs942696493 792 dbSNP
rs879510766 803 dbSNP
rs1175028905 805 dbSNP
rs1375486179 809 dbSNP
rs1429101241 810 dbSNP
rs550307961 811 dbSNP
rs1398378801 812 dbSNP
rs1391688991 816 dbSNP
rs940709342 821 dbSNP
rs574577825 829 dbSNP
rs1329507251 830 dbSNP
rs1236748443 837 dbSNP
rs181608666 841 dbSNP
rs549594963 858 dbSNP
rs1253678979 876 dbSNP
rs1341544374 877 dbSNP
rs960166107 884 dbSNP
rs1277322536 886 dbSNP
rs1481167941 887 dbSNP
rs1209576035 888 dbSNP
rs918492038 892 dbSNP
rs927347599 893 dbSNP
rs1436185408 900 dbSNP
rs1195105438 902 dbSNP
rs1252868976 912 dbSNP
rs1448288079 931 dbSNP
rs1166645322 933 dbSNP
rs972601159 934 dbSNP
rs962529681 935 dbSNP
rs1388275604 937 dbSNP
rs980322151 940 dbSNP
rs554847069 941 dbSNP
rs1364566803 953 dbSNP
rs1226189959 959 dbSNP
rs1236394088 960 dbSNP
rs1021868110 963 dbSNP
rs1010441987 964 dbSNP
rs1024001644 969 dbSNP
rs1215188825 971 dbSNP
rs956253020 973 dbSNP
rs1439330576 975 dbSNP
rs1464071141 976 dbSNP
rs1019290449 979 dbSNP
rs1008285898 989 dbSNP
rs759027253 990 dbSNP
rs1329030257 992 dbSNP
rs1429095063 1001 dbSNP
rs1395161286 1002 dbSNP
rs1366563703 1004 dbSNP
rs1462768683 1010 dbSNP
rs1165932263 1013 dbSNP
rs1375206966 1029 dbSNP
rs1052626322 1033 dbSNP
rs1290760241 1052 dbSNP
rs374259461 1057 dbSNP
rs1396019401 1058 dbSNP
rs776073527 1065 dbSNP
rs1337408490 1074 dbSNP
rs1234237615 1079 dbSNP
rs10181341 1081 dbSNP
rs1328104507 1082 dbSNP
rs866169750 1087 dbSNP
rs1036825907 1088 dbSNP
rs545650648 1094 dbSNP
rs1485902938 1103 dbSNP
rs1181224563 1105 dbSNP
rs939928719 1107 dbSNP
rs1253914003 1110 dbSNP
rs533479514 1126 dbSNP
rs889857314 1128 dbSNP
rs1410924439 1132 dbSNP
rs1051128338 1140 dbSNP
rs1161535065 1146 dbSNP
rs1345873036 1147 dbSNP
rs1465549159 1154 dbSNP
rs1301637314 1159 dbSNP
rs1468615837 1160 dbSNP
rs917799726 1163 dbSNP
rs1288159040 1170 dbSNP
rs1057154145 1172 dbSNP
rs918541390 1173 dbSNP
rs938665951 1173 dbSNP
rs1316996195 1179 dbSNP
rs1208770601 1184 dbSNP
rs566038439 1185 dbSNP
rs980148858 1186 dbSNP
rs1442121408 1189 dbSNP
rs1250877132 1192 dbSNP
rs1468356346 1199 dbSNP
rs760160328 1204 dbSNP
rs772874737 1205 dbSNP
rs1408933169 1206 dbSNP
rs1212700411 1207 dbSNP
rs1432692899 1213 dbSNP
rs1485887852 1214 dbSNP
rs771818807 1221 dbSNP
rs747945667 1224 dbSNP
rs139132281 1225 dbSNP
rs1369114317 1230 dbSNP
rs909687163 1231 dbSNP
rs1280961758 1234 dbSNP
rs1222006927 1237 dbSNP
rs980329340 1239 dbSNP
rs1218257069 1246 dbSNP
rs1300677523 1249 dbSNP
rs956333543 1261 dbSNP
rs1020267692 1267 dbSNP
rs1435897316 1275 dbSNP
rs573789548 1283 dbSNP
rs1353220349 1284 dbSNP
rs1233219353 1286 dbSNP
rs953834086 1288 dbSNP
rs1488299319 1289 dbSNP
rs1191977906 1291 dbSNP
rs548299085 1292 dbSNP
rs115643428 1293 dbSNP
rs1416957939 1301 dbSNP
rs1226739445 1305 dbSNP
rs955669525 1306 dbSNP
rs1031214548 1308 dbSNP
rs540018994 1311 dbSNP
rs995256198 1312 dbSNP
rs879918022 1314 dbSNP
rs999707955 1317 dbSNP
rs1159273074 1318 dbSNP
rs1372543293 1320 dbSNP
rs898211910 1322 dbSNP
rs1474987340 1325 dbSNP
rs1415889052 1326 dbSNP
rs1190344881 1327 dbSNP
rs1216222251 1328 dbSNP
rs1475372049 1331 dbSNP
rs1273527166 1332 dbSNP
rs1015451977 1336 dbSNP
rs778767121 1338 dbSNP
rs572737916 1339 dbSNP
rs1056774592 1340 dbSNP
rs1213541279 1341 dbSNP
rs557688310 1345 dbSNP
rs10178600 1346 dbSNP
rs1240409558 1360 dbSNP
rs569064850 1364 dbSNP
rs889919053 1371 dbSNP
rs1051608229 1375 dbSNP
rs1044802129 1376 dbSNP
rs1334403511 1376 dbSNP
rs947483241 1377 dbSNP
rs1233530404 1379 dbSNP
rs914634795 1384 dbSNP
rs1319347252 1386 dbSNP
rs1356505538 1387 dbSNP
rs933988030 1390 dbSNP
rs988960888 1394 dbSNP
rs373336736 1398 dbSNP
rs1275312036 1399 dbSNP
rs1036962345 1400 dbSNP
rs1208313945 1408 dbSNP
rs912845085 1412 dbSNP
rs1282328946 1416 dbSNP
rs1448800380 1417 dbSNP
rs987454402 1418 dbSNP
rs150765484 1419 dbSNP
rs1319578007 1420 dbSNP
rs948549755 1424 dbSNP
rs535489132 1425 dbSNP
rs768641999 1426 dbSNP
rs992945859 1428 dbSNP
rs142183963 1429 dbSNP
rs922484697 1429 dbSNP
rs1318931068 1430 dbSNP
rs1339756885 1431 dbSNP
rs1412835174 1439 dbSNP
rs1294948046 1441 dbSNP
rs1355851125 1453 dbSNP
rs1228078074 1456 dbSNP
rs3768646 1463 dbSNP
rs528209966 1465 dbSNP
rs1476287931 1466 dbSNP
rs1242582941 1468 dbSNP
rs1004080703 1469 dbSNP
rs1277972095 1473 dbSNP
rs567027476 1475 dbSNP
rs1022968918 1482 dbSNP
rs1007094052 1488 dbSNP
rs889917926 1492 dbSNP
rs1466698966 1494 dbSNP
rs558996621 1499 dbSNP
rs140487777 1504 dbSNP
rs114265709 1505 dbSNP
rs905076589 1512 dbSNP
rs1470892967 1514 dbSNP
rs1037057326 1516 dbSNP
rs1374292478 1518 dbSNP
rs1005553385 1520 dbSNP
rs1213140055 1532 dbSNP
rs1375851528 1535 dbSNP
rs888404367 1539 dbSNP
rs1305159962 1545 dbSNP
rs1044392364 1550 dbSNP
rs533636681 1551 dbSNP
rs1044671141 1554 dbSNP
rs947370904 1555 dbSNP
rs563080447 1562 dbSNP
rs1368852642 1564 dbSNP
rs1482953842 1570 dbSNP
rs1194389481 1578 dbSNP
rs917046216 1582 dbSNP
rs1235240518 1587 dbSNP
rs1182078928 1589 dbSNP
rs1394015046 1589 dbSNP
rs893251086 1596 dbSNP
rs1053123921 1598 dbSNP
rs934440486 1600 dbSNP
rs1395556121 1604 dbSNP
rs1461401520 1609 dbSNP
rs1296278631 1611 dbSNP
rs1398356566 1613 dbSNP
rs534782468 1619 dbSNP
rs544199141 1620 dbSNP
rs1462135526 1621 dbSNP
rs1325402719 1629 dbSNP
rs1354116914 1630 dbSNP
rs529279738 1635 dbSNP
rs561833757 1643 dbSNP
rs1307477842 1644 dbSNP
rs1225840065 1649 dbSNP
rs1411394167 1658 dbSNP
rs1340480378 1659 dbSNP
rs540298049 1664 dbSNP
rs1172934450 1667 dbSNP
rs1466766790 1668 dbSNP
rs932907889 1670 dbSNP
rs1253046683 1671 dbSNP
rs1427917152 1677 dbSNP
rs879476764 1678 dbSNP
rs1462242435 1679 dbSNP
rs1392498679 1682 dbSNP
rs1463194004 1683 dbSNP
rs973759463 1686 dbSNP
rs1361355072 1692 dbSNP
rs573257971 1693 dbSNP
rs775815727 1694 dbSNP
rs771981182 1696 dbSNP
rs1298300474 1697 dbSNP
rs1327395872 1702 dbSNP
rs1193765340 1704 dbSNP
rs116106989 1705 dbSNP
rs1230758471 1710 dbSNP
rs908328810 1715 dbSNP
rs545718676 1716 dbSNP
rs961492183 1723 dbSNP
rs570118604 1724 dbSNP
rs1485224356 1727 dbSNP
rs982937408 1738 dbSNP
rs575489304 1740 dbSNP
rs550034024 1742 dbSNP
rs745964628 1745 dbSNP
rs1005563449 1772 dbSNP
rs888405027 1773 dbSNP
rs1415360908 1777 dbSNP
rs74614087 1777 dbSNP
rs1463276681 1780 dbSNP
rs1013220479 1781 dbSNP
rs753122814 1788 dbSNP
rs1364599381 1789 dbSNP
rs1291179090 1792 dbSNP
rs528187634 1793 dbSNP
rs1386373329 1794 dbSNP
rs895721888 1796 dbSNP
rs969299724 1807 dbSNP
rs574450897 1810 dbSNP
rs1234758981 1812 dbSNP
rs1312901652 1817 dbSNP
rs1011567017 1819 dbSNP
rs1261951751 1822 dbSNP
rs893136429 1824 dbSNP
rs1053007083 1825 dbSNP
rs145983995 1826 dbSNP
rs891180785 1827 dbSNP
rs1407482822 1835 dbSNP
rs1432753531 1838 dbSNP
rs1051721235 1844 dbSNP
rs1161423583 1850 dbSNP
rs1364452865 1856 dbSNP
rs1434704151 1864 dbSNP
rs1311526392 1869 dbSNP
rs534659169 1870 dbSNP
rs1415736696 1883 dbSNP
rs1303086523 1885 dbSNP
rs777678534 1885 dbSNP
rs1396772807 1889 dbSNP
rs1174213159 1892 dbSNP
rs1308606613 1900 dbSNP
rs3768647 1901 dbSNP
rs1233493444 1907 dbSNP
rs921545083 1914 dbSNP
rs1486549012 1923 dbSNP
rs1457132843 1924 dbSNP
rs1038626294 1925 dbSNP
rs1405243037 1933 dbSNP
rs551942826 1934 dbSNP
rs1479818148 1937 dbSNP
rs188806567 1944 dbSNP
rs908209986 1945 dbSNP
rs1252951235 1946 dbSNP
rs569513245 1959 dbSNP
rs6737643 1961 dbSNP
rs1283016501 1967 dbSNP
rs1234611446 1974 dbSNP
rs954464451 1977 dbSNP
rs922845090 1978 dbSNP
rs1353121623 1985 dbSNP
rs976950222 1988 dbSNP
rs1439648009 1990 dbSNP
rs1305033593 1991 dbSNP
rs1439470172 1992 dbSNP
rs1225663261 1993 dbSNP
rs1350011533 1994 dbSNP
rs1219735098 1995 dbSNP
rs960751948 1998 dbSNP
rs1312536006 2000 dbSNP
rs927716066 2001 dbSNP
rs1377048791 2005 dbSNP
rs1005615587 2016 dbSNP
rs61138718 2020 dbSNP
rs1453036766 2033 dbSNP
rs527980401 2038 dbSNP
rs1022207960 2040 dbSNP
rs1417835548 2043 dbSNP
rs1411939287 2044 dbSNP
rs1172129325 2055 dbSNP
rs1461510879 2061 dbSNP
rs895761478 2063 dbSNP
rs1323385295 2064 dbSNP
rs1035564585 2076 dbSNP
rs1419182801 2082 dbSNP
rs1437122564 2085 dbSNP
rs1269455767 2092 dbSNP
rs1010778873 2109 dbSNP
rs1359639329 2110 dbSNP
rs1416648416 2114 dbSNP
rs998653662 2116 dbSNP
rs13014574 2126 dbSNP
rs13014572 2127 dbSNP
rs1212055027 2137 dbSNP
rs1042808182 2143 dbSNP
rs1452197411 2147 dbSNP
rs1193106646 2150 dbSNP
rs1032100667 2155 dbSNP
rs1476607110 2171 dbSNP
rs1201517299 2172 dbSNP
rs1485856069 2173 dbSNP
rs1417584551 2176 dbSNP
rs1474709143 2179 dbSNP
rs1259009171 2183 dbSNP
rs998842151 2184 dbSNP
rs1329961772 2185 dbSNP
rs891230778 2187 dbSNP
rs558893384 2188 dbSNP
rs997053802 2192 dbSNP
rs900000622 2200 dbSNP
rs546596502 2203 dbSNP
rs1317581726 2204 dbSNP
rs888860042 2205 dbSNP
rs1432769301 2208 dbSNP
rs1357112776 2225 dbSNP
rs1278681127 2227 dbSNP
rs1050552574 2228 dbSNP
rs1313220052 2232 dbSNP
rs932991672 2244 dbSNP
rs1295284893 2251 dbSNP
rs1381544632 2253 dbSNP
rs1382642787 2259 dbSNP
rs1204581926 2260 dbSNP
rs142301814 2262 dbSNP
rs941602150 2263 dbSNP
rs887329667 2264 dbSNP
rs1453779538 2269 dbSNP
rs1217971290 2283 dbSNP
rs1393100716 2287 dbSNP
rs184289105 2289 dbSNP
rs192628350 2290 dbSNP
rs976963134 2303 dbSNP
rs940189556 2308 dbSNP
rs1420446793 2322 dbSNP
rs35919191 2325 dbSNP
rs908681005 2326 dbSNP
rs927736323 2328 dbSNP
rs1421504300 2335 dbSNP
rs980543336 2341 dbSNP
rs1374635516 2349 dbSNP
rs1412656685 2353 dbSNP
rs1188734363 2358 dbSNP
rs780914258 2358 dbSNP
rs1238566238 2362 dbSNP
rs1277912710 2364 dbSNP
rs1352854619 2365 dbSNP
rs575381062 2369 dbSNP
rs1484905848 2370 dbSNP
rs1260203627 2379 dbSNP
rs1442707489 2380 dbSNP
rs201157140 2380 dbSNP
rs1188818576 2381 dbSNP
rs1056764799 2385 dbSNP
rs1230695617 2385 dbSNP
rs1159216612 2386 dbSNP
rs989242380 2388 dbSNP
rs371818557 2390 dbSNP
rs1432761775 2391 dbSNP
rs151135314 2391 dbSNP
rs3030188 2391 dbSNP
rs956639677 2391 dbSNP
rs1346387415 2394 dbSNP
rs1465396069 2394 dbSNP
rs563488061 2396 dbSNP
rs542115966 2400 dbSNP
rs1023047604 2402 dbSNP
rs574788497 2407 dbSNP
rs991933156 2417 dbSNP
rs139104907 2422 dbSNP
rs977855412 2428 dbSNP
rs1266293572 2430 dbSNP
rs772788821 2433 dbSNP
rs1270403092 2434 dbSNP
rs960034631 2434 dbSNP
rs749699761 2436 dbSNP
rs780391355 2439 dbSNP
rs189049771 2440 dbSNP
rs1035576277 2449 dbSNP
rs1452580233 2451 dbSNP
rs955396188 2468 dbSNP
rs1200838180 2476 dbSNP
rs1030202350 2479 dbSNP
rs1461257626 2484 dbSNP
rs1226355687 2485 dbSNP
rs996937360 2495 dbSNP
rs899884459 2496 dbSNP
rs1017128583 2497 dbSNP
rs1005700900 2505 dbSNP
rs1368854356 2506 dbSNP
rs534363236 2511 dbSNP
rs1435810659 2514 dbSNP
rs146384489 2520 dbSNP
rs115973980 2521 dbSNP
rs1260376873 2527 dbSNP
rs1442612280 2529 dbSNP
rs1050146144 2530 dbSNP
rs1166990007 2531 dbSNP
rs939054094 2533 dbSNP
rs530718938 2536 dbSNP
rs901485448 2537 dbSNP
rs1211593619 2550 dbSNP
rs1041332783 2551 dbSNP
rs1427824355 2556 dbSNP
rs149437281 2557 dbSNP
rs1425500498 2562 dbSNP
rs1478303900 2564 dbSNP
rs1164408910 2574 dbSNP
rs947818259 2575 dbSNP
rs1459473940 2580 dbSNP
rs1173142067 2586 dbSNP
rs914967038 2587 dbSNP
rs989296076 2591 dbSNP
rs935154332 2599 dbSNP
rs1469894453 2600 dbSNP
rs528123098 2601 dbSNP
rs1195448753 2606 dbSNP
rs11898950 2609 dbSNP
rs397820569 2610 dbSNP
rs1265484282 2611 dbSNP
rs1319422946 2611 dbSNP
rs34564593 2611 dbSNP
rs1203298499 2613 dbSNP
rs1485541135 2613 dbSNP
rs1252916468 2616 dbSNP
rs1488457508 2623 dbSNP
rs1229027556 2624 dbSNP
rs1187541716 2626 dbSNP
rs369432569 2628 dbSNP
rs1425758946 2631 dbSNP
rs931492160 2637 dbSNP
rs915988856 2638 dbSNP
rs867588880 2639 dbSNP
rs1301202405 2640 dbSNP
rs1300527698 2647 dbSNP
rs1361606960 2649 dbSNP
rs1414494326 2653 dbSNP
rs75120972 2655 dbSNP
rs80162598 2656 dbSNP
rs74839089 2657 dbSNP
rs80255227 2658 dbSNP
rs987405765 2659 dbSNP
rs555942991 2668 dbSNP
rs761585643 2678 dbSNP
rs1312882767 2679 dbSNP
rs1035628234 2685 dbSNP
rs1288027929 2689 dbSNP
rs557997765 2689 dbSNP
rs1029671531 2690 dbSNP
rs1389372792 2693 dbSNP
rs1354179897 2695 dbSNP
rs967292125 2696 dbSNP
rs1235492243 2704 dbSNP
rs1484400718 2708 dbSNP
rs1394751075 2716 dbSNP
rs1021532949 2719 dbSNP
rs1417353734 2723 dbSNP
rs887842 2729 dbSNP
rs1381524482 2733 dbSNP
rs953198239 2743 dbSNP
rs768603905 2748 dbSNP
rs1017013680 2751 dbSNP
rs1005756444 2756 dbSNP
rs1449792247 2770 dbSNP
rs1378347420 2771 dbSNP
rs1181346847 2774 dbSNP
rs1436339217 2782 dbSNP
rs184521564 2788 dbSNP
rs749229900 2789 dbSNP
rs997246177 2797 dbSNP
rs1233472892 2801 dbSNP
rs1252368947 2808 dbSNP
rs1205561438 2818 dbSNP
rs1313681160 2826 dbSNP
rs1211097440 2827 dbSNP
rs780060238 2830 dbSNP
rs1456591346 2835 dbSNP
rs1003806013 2842 dbSNP
rs568452697 2843 dbSNP
rs192518290 2845 dbSNP
rs543202626 2845 dbSNP
rs1415360296 2850 dbSNP
rs528504012 2850 dbSNP
rs1278030961 2852 dbSNP
rs1236416315 2853 dbSNP
rs1011848349 2862 dbSNP
rs747090182 2863 dbSNP
rs1440104459 2864 dbSNP
rs1272935846 2866 dbSNP
rs750021276 2873 dbSNP
rs893586716 2875 dbSNP
rs1337118433 2894 dbSNP
rs928705891 2903 dbSNP
rs707718 2907 dbSNP
rs1200744820 2908 dbSNP
rs114839562 2909 dbSNP
rs1375225223 2917 dbSNP
rs1248914869 2922 dbSNP
rs1311586778 2927 dbSNP
rs1186340800 2930 dbSNP
rs923802995 2934 dbSNP
rs1416708176 2937 dbSNP
rs188060390 2941 dbSNP
rs182538804 2943 dbSNP
rs1468697367 2945 dbSNP
rs541282307 2946 dbSNP
rs914474287 2958 dbSNP
rs1460434288 2959 dbSNP
rs1183183509 2961 dbSNP
rs1351584127 2966 dbSNP
rs933266379 2977 dbSNP
rs921821190 2978 dbSNP
rs2420201 2986 dbSNP
rs964030697 2987 dbSNP
rs191715137 2988 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acucuguccaaguACGACGaua 5'
                       ||||||   
Target 5' --aaauuaccuauUGCUGC--- 3'
1 - 17
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 56603.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acucuguccaaguACGACGAUa 5'
                       |||||||| 
Target 5' ugaaauuaccuauUGCUGCUAc 3'
7 - 28
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000001146.2 | 3UTR | AAAUUACCUAUUGCUGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000001146.2 | 3UTR | ACAAUUUGAAAUUACCUAUUGCUGCUACUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
180 hsa-miR-4524a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055251 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT055826 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT060573 CCND1 cyclin D1 2 2
MIRT061013 C1ORF21 chromosome 1 open reading frame 21 2 6
MIRT064694 CCND2 cyclin D2 2 4
MIRT075268 SNTB2 syntrophin beta 2 2 4
MIRT079668 NAPG NSF attachment protein gamma 2 12
MIRT081651 CCNE1 cyclin E1 2 4
MIRT082996 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT083463 RALGAPB Ral GTPase activating protein non-catalytic beta subunit 2 4
MIRT085755 RIF1 replication timing regulatory factor 1 2 2
MIRT086022 UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative) 2 2
MIRT087431 ZNRF3 zinc and ring finger 3 2 2
MIRT088786 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT089221 ACTR2 ARP2 actin related protein 2 homolog 2 2
MIRT093696 PI4K2B phosphatidylinositol 4-kinase type 2 beta 2 6
MIRT095090 SEC24A SEC24 homolog A, COPII coat complex component 2 4
MIRT096249 CANX calnexin 2 2
MIRT100215 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT100746 VEGFA vascular endothelial growth factor A 2 12
MIRT100904 CD2AP CD2 associated protein 2 2
MIRT102647 UBN2 ubinuclein 2 2 10
MIRT103882 FOXK1 forkhead box K1 2 2
MIRT104246 DMTF1 cyclin D binding myb like transcription factor 1 2 2
MIRT106310 ZFHX4 zinc finger homeobox 4 2 6
MIRT107696 RECK reversion inducing cysteine rich protein with kazal motifs 2 2
MIRT114943 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT117671 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT133799 SKI SKI proto-oncogene 2 2
MIRT140167 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT142279 DCTN5 dynactin subunit 5 2 8
MIRT143288 N4BP1 NEDD4 binding protein 1 2 2
MIRT165939 CREBRF CREB3 regulatory factor 2 2
MIRT175251 PSAT1 phosphoserine aminotransferase 1 2 6
MIRT186381 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT191470 PPM1A protein phosphatase, Mg2+/Mn2+ dependent 1A 2 2
MIRT196480 TAOK1 TAO kinase 1 2 2
MIRT201470 SNRPB2 small nuclear ribonucleoprotein polypeptide B2 2 8
MIRT204615 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 8
MIRT204646 MOB4 MOB family member 4, phocein 2 8
MIRT204749 BZW1 basic leucine zipper and W2 domains 1 2 12
MIRT206031 NUP50 nucleoporin 50 2 6
MIRT211196 FGF2 fibroblast growth factor 2 2 4
MIRT229353 ZNF449 zinc finger protein 449 2 2
MIRT247138 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT249461 ZNF691 zinc finger protein 691 2 4
MIRT256314 CDC42SE2 CDC42 small effector 2 2 2
MIRT258419 WIPI2 WD repeat domain, phosphoinositide interacting 2 2 2
MIRT265083 CHEK1 checkpoint kinase 1 2 2
MIRT270561 SETD1B SET domain containing 1B 2 2
MIRT274749 RAB3IP RAB3A interacting protein 2 2
MIRT277515 PPP2R5C protein phosphatase 2 regulatory subunit B'gamma 2 4
MIRT289642 CBX2 chromobox 2 2 2
MIRT301001 MTMR3 myotubularin related protein 3 2 2
MIRT307149 CTDSPL CTD small phosphatase like 2 4
MIRT309021 USP53 ubiquitin specific peptidase 53 2 2
MIRT314100 PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 2 8
MIRT319338 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 2 2
MIRT320619 ZNRF2 zinc and ring finger 2 2 2
MIRT324285 LURAP1L leucine rich adaptor protein 1 like 2 2
MIRT446498 ASCC1 activating signal cointegrator 1 complex subunit 1 2 2
MIRT448437 TLL1 tolloid like 1 2 2
MIRT461537 ACTR3B ARP3 actin related protein 3 homolog B 2 2
MIRT463162 ZNF367 zinc finger protein 367 2 10
MIRT463493 ZC3H10 zinc finger CCCH-type containing 10 2 2
MIRT465154 TSC22D2 TSC22 domain family member 2 2 2
MIRT466418 TFAP2A transcription factor AP-2 alpha 2 8
MIRT468278 SFT2D2 SFT2 domain containing 2 2 2
MIRT469399 REL REL proto-oncogene, NF-kB subunit 2 6
MIRT471941 NR6A1 nuclear receptor subfamily 6 group A member 1 2 2
MIRT473688 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT479618 CDC25A cell division cycle 25A 2 2
MIRT482098 AKT3 AKT serine/threonine kinase 3 2 4
MIRT483995 ATAD5 ATPase family, AAA domain containing 5 2 12
MIRT485205 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 8
MIRT498763 C3orf38 chromosome 3 open reading frame 38 2 8
MIRT498961 ORC4 origin recognition complex subunit 4 2 8
MIRT499440 ODF2L outer dense fiber of sperm tails 2 like 2 8
MIRT500080 L2HGDH L-2-hydroxyglutarate dehydrogenase 2 8
MIRT500305 ZNF622 zinc finger protein 622 2 8
MIRT500410 ZMAT3 zinc finger matrin-type 3 2 8
MIRT500789 TLK1 tousled like kinase 1 2 6
MIRT500930 SRPR SRP receptor alpha subunit 2 6
MIRT500943 SREK1 splicing regulatory glutamic acid and lysine rich protein 1 2 8
MIRT501068 SMAD7 SMAD family member 7 2 8
MIRT501711 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT502627 DDX3X DEAD-box helicase 3, X-linked 2 8
MIRT502910 CDCA4 cell division cycle associated 4 2 8
MIRT502935 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504531 ZNF620 zinc finger protein 620 2 6
MIRT505106 YTHDC1 YTH domain containing 1 2 6
MIRT505337 TMEM245 transmembrane protein 245 2 6
MIRT505383 TMEM100 transmembrane protein 100 2 2
MIRT505678 SESTD1 SEC14 and spectrin domain containing 1 2 6
MIRT506157 PLAG1 PLAG1 zinc finger 2 8
MIRT506183 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 6
MIRT506475 MYO5A myosin VA 2 6
MIRT506826 KIF23 kinesin family member 23 2 6
MIRT507160 GAS2L3 growth arrest specific 2 like 3 2 2
MIRT507511 DYNLL2 dynein light chain LC8-type 2 2 4
MIRT507845 CCNE2 cyclin E2 2 6
MIRT510403 ZNF507 zinc finger protein 507 2 2
MIRT518078 TRIM35 tripartite motif containing 35 2 2
MIRT518982 NNT nicotinamide nucleotide transhydrogenase 2 4
MIRT521045 SLC2A3 solute carrier family 2 member 3 2 4
MIRT521190 SBNO1 strawberry notch homolog 1 2 6
MIRT522088 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 4
MIRT524846 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT527787 TMEM44 transmembrane protein 44 2 4
MIRT537803 EFNB2 ephrin B2 2 4
MIRT540830 GNAT1 G protein subunit alpha transducin 1 2 4
MIRT541140 PISD phosphatidylserine decarboxylase 2 2
MIRT541419 CBX4 chromobox 4 2 2
MIRT543517 PRSS21 protease, serine 21 2 2
MIRT543824 GSG1 germ cell associated 1 2 2
MIRT544959 UGT2B4 UDP glucuronosyltransferase family 2 member B4 2 2
MIRT545179 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 4
MIRT545335 CCDC83 coiled-coil domain containing 83 2 2
MIRT545518 RSL24D1 ribosomal L24 domain containing 1 2 2
MIRT545670 DECR1 2,4-dienoyl-CoA reductase 1 2 2
MIRT545931 ZBTB44 zinc finger and BTB domain containing 44 2 4
MIRT546102 USP48 ubiquitin specific peptidase 48 2 4
MIRT546598 SALL1 spalt like transcription factor 1 2 4
MIRT546626 RTN4 reticulon 4 2 2
MIRT547651 KPNA3 karyopherin subunit alpha 3 2 2
MIRT547987 HCFC2 host cell factor C2 2 4
MIRT548717 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT548931 CDK17 cyclin dependent kinase 17 2 2
MIRT549067 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT549266 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT550460 OSCAR osteoclast associated, immunoglobulin-like receptor 2 4
MIRT550806 FAM229B family with sequence similarity 229 member B 2 2
MIRT552024 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT552334 ZNF704 zinc finger protein 704 2 2
MIRT552732 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT553795 SZRD1 SUZ RNA binding domain containing 1 2 4
MIRT554694 RNF149 ring finger protein 149 2 2
MIRT555133 PTPRD protein tyrosine phosphatase, receptor type D 2 2
MIRT555264 PRDM4 PR/SET domain 4 2 2
MIRT556848 KANK1 KN motif and ankyrin repeat domains 1 2 4
MIRT557474 GPR27 G protein-coupled receptor 27 2 4
MIRT558018 EXT1 exostosin glycosyltransferase 1 2 2
MIRT558498 CYP26B1 cytochrome P450 family 26 subfamily B member 1 2 4
MIRT558579 CREBL2 cAMP responsive element binding protein like 2 2 4
MIRT558610 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT558650 CNKSR3 CNKSR family member 3 2 2
MIRT558986 CA8 carbonic anhydrase 8 2 2
MIRT559141 BTN3A3 butyrophilin subfamily 3 member A3 2 2
MIRT559327 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 2 2
MIRT562021 LANCL1 LanC like 1 2 2
MIRT562869 KIAA1456 KIAA1456 2 2
MIRT563074 SLC25A12 solute carrier family 25 member 12 2 2
MIRT563496 DLGAP3 DLG associated protein 3 2 2
MIRT563890 RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 2 2
MIRT564311 CCNT1 cyclin T1 2 2
MIRT564942 XKR7 XK related 7 2 2
MIRT564979 WNK3 WNK lysine deficient protein kinase 3 2 2
MIRT565423 TEF TEF, PAR bZIP transcription factor 2 2
MIRT566824 MAP3K7 mitogen-activated protein kinase kinase kinase 7 2 2
MIRT571961 KIF5B kinesin family member 5B 2 2
MIRT575877 Cask calcium/calmodulin-dependent serine protein kinase (MAGUK family) 2 3
MIRT576523 Txlna taxilin alpha 2 2
MIRT614693 TRAK1 trafficking kinesin protein 1 2 2
MIRT616065 ZC3H14 zinc finger CCCH-type containing 14 2 2
MIRT618838 ASAH2B N-acylsphingosine amidohydrolase 2B 2 2
MIRT624626 ATXN2 ataxin 2 2 2
MIRT624652 ASAH2 N-acylsphingosine amidohydrolase 2 2 2
MIRT640314 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT659248 CUL3 cullin 3 2 2
MIRT680972 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT682261 RS1 retinoschisin 1 2 2
MIRT682505 GLP2R glucagon like peptide 2 receptor 2 2
MIRT693904 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 2 2
MIRT699214 SLCO3A1 solute carrier organic anion transporter family member 3A1 2 2
MIRT699373 SLC30A6 solute carrier family 30 member 6 2 2
MIRT699451 SLC16A9 solute carrier family 16 member 9 2 2
MIRT701230 OCRL OCRL, inositol polyphosphate-5-phosphatase 2 2
MIRT702849 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT706163 CASK calcium/calmodulin dependent serine protein kinase 2 3
MIRT718990 UTP15 UTP15, small subunit processome component 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4524a-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-4524a-5p Cetuximab resistant tissue (colorectal carcinoma)

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