pre-miRNA Information
pre-miRNA hsa-mir-4524a   
Genomic Coordinates chr17: 69099564 - 69099632
Description Homo sapiens miR-4524a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4524a-5p
Sequence 6| AUAGCAGCAUGAACCUGUCUCA |27
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1322445998 8 dbSNP
rs1350790266 13 dbSNP
rs1263495678 21 dbSNP
Putative Targets

Gene Information
Gene Symbol ATP5G3   
Synonyms P3
Description ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9)
Transcript NM_001190329   
Other Transcripts NM_001002258 , NM_001689   
Expression
Putative miRNA Targets on ATP5G3
3'UTR of ATP5G3
(miRNA target sites are highlighted)
>ATP5G3|NM_001190329|3'UTR
   1 TCATTTCTATCCCTAAATAAGTTAAGAGCATGCTTGCAGTAGTTGGAAACTTAGCTACTGAAATAATAGCTACTTTGCAT
  81 TAAGTGCTTACTCTGTGTCTTGCATTATATTTAAAGGGCTTTGTATGCATTATCTCACTTAATTCTCATAACACCATTTG
 161 GGGTGTTATGAGAATAACATCTATGAAGGACTAGAGACACAGAGGCCACATTACTTGCCCAGGTCATAGCTAGTAAATGT
 241 CAGAAAATGAATTTTAACTAAGTCTGACTTCAGAGTCTGCATTCCTAATTGTTAAGCTATTTTGGGAATAAAATTATTAG
 321 AGCACATTCCTTAAAAGGATCAATTTATTTTATTTAAGACCTAAACTGTCAGATCTTAAAAGGTATAGATCATATTTTCA
 401 GATGGATAAGAATGTCAGAACCCATCAAAATGAATGAAAACTAACCATTTATATTGACAGACAGCTCCCTACCTTTACAC
 481 CATATTATCAGGATTGAAGGAGAATAGTGTAAGAGAGATCTAGGCAAATACTCTTCCAGCAGACTTTTCAGTTTACAAAA
 561 ATCCCCACACTAGTAATCTGATTCTTTAACATTTACCAAACATGTTGAAATTAATATTTCAAAGTAACAGTCATATGTGG
 641 TCTCTTTTAGAAACCCTTCGCTGAAGCAGCAGCTGTTCTCATATGCTATCCTGGGATTTGCCTTGTCTGAAGCTATGGGT
 721 CTCTTTTGTTTGATGGTTGCTTTCTTGATTTTGTTTGCCATGTAACAAATTACTGCTTGACATGTTGGCATTCATATTAA
 801 TTACGGATGTAATTCTGTGTATCTTACTGTGACTCCGAAAACTGTAGTATTGGTGTCATGGGAATGTACGTTATTTCCAA
 881 AGTCATTTCATTAAAGATGAAAACTTTAATTTCTTCTGTGATTTGTACTTACACTAAGTTTAGATTATCACAAAGAAGAA
 961 CGTGCATTCAGGCAGATGCTGTCCCATTCAGAGGAAGCTACAGCAGTTGCTCCACTGATGAAAAATATTCCAATGTAATT
1041 TTTATGGGAATTCTTTTATATAGTGTTCTGCATATTGTAATTCATAGGGCTTTTGTTTATTCATATAAAGGATAAATATT
1121 TGGGTGTTTTGAGCTTCTATAAAATATGATTAATTAAAGGTAGTTAATACTCAAGATGGTCTTGAGTTTTTAAGGTCTAA
1201 CATCAGTTAGAATACTTCAAATCAGAATCACCTTCCAAGACTGACTTGACAGGTGGTTCTAAAAATAAATCACGTCAGCT
1281 TTTTAGGAAATGAAGCCTTAAGCTAGGGGGTAATGTGACTTTTGTTTTTCAGTAAGTCTCACATTAAGCAATTGTGTGCC
1361 TCTAATGAATCTTCCATGTCTTTTCAGAACAGGCTCAGTCCAACTAGCAGCTAGTTTCTTACTTGAACAAGACTATTAAA
1441 AACCAAATATCAAAAAACTGAATTGGCTAGATTTTTACAGCCAAAAATTGCTGTAAGGCAGTGTGTATCACTGTTGCTAA
1521 CATGTTTATAGTGGGAGTCTTGGGGATGATAGCTGGTTCAACAGTATTTTGCTGCTAATACTTTATGTTGCTTCTTGGTC
1601 AAACTTTTCCCATTCAAAGGAAGAAGATGGTGCTACTATAGACAGTTTTTCCCCTAGCAAATATATTGTACCATAATATC
1681 TATCATCCAAGTTTCAGGGTTTTTTGAAAGTTGATAATTAGGAAAGTGACATTTTACTTTTCTTAGTGCCCTTTGCCTGT
1761 TTGATTTCCATTGAGAAAGAGCAGTCACCAAAGTTCCTCAAGTGTCGGAAGACCACCTCCATCAGAATCAGTGCTTGTTT
1841 AAAAAATAAAAATCCCTAGGTTCCAGACCTACTGAATTGGACTCTTTGGACATGAGACTCAGCAATCTACATCTTTAAAA
1921 AGGCTTCCCAGGTGGTTTTTGTGCATACTGTTTGAGAGTCACTAAGTTATATATATATCCTACCTTCTGTAAAGTGAAAT
2001 GAGGCCCCAAAAAGCTAAAGAGGTAGAGCTGCTACCTCGTTTTTAGTTGATTCATCATCTAGTCTATATCACCCAAAAGA
2081 ATTGGAAATAGGTATTCAAACAAAAACCTGTATACAAGTATTCATAGAAGCACTACTTACAATAGCCGAAAGGTAGAAAC
2161 AACCAAATGTCTATCAGCTGATGAATGGATAAGTAAAATACATCCATATAATGGAATATTCAGCCATGAAAAGGAATGAG
2241 GCACTGATACATAATGAATAGATGTGAGTGAACCCTAAGAAAGCATGCTAAGTGGAAGAAGCCAGCCACATGATTCCATT
2321 TATATGAAATATCCAAAATAGGCAAATCCACGGTGACAAAGCCAATTAGTAGTTATCAGGAACTAGGGAGGGGGTGAAAA
2401 GGGAGTGACTGCGTAATGCGTATGGGGATTCCTTTTAGGATGATGAAAATTGGATGAATTACAGCTGGTCTGATGGTAGT
2481 GGGTTATCAGAACTTATTAACATTAGTGTCATTAAAGTTGGTATATAGCCCCTCACTGCTAAATCTGGCTCAAAAATTAA
2561 AAGATTATTAAAATTTGATGAATTAGTGGTGATGGTTGCACAACATTGTAAATATAATAAATGTCACTGAATTGTACACT
2641 TTAAGGTGGTTAAAATGGCAAATTTTACATGTCTTACTGAAACTACTATTTAATACAAAGTACATAGTATAAAATTTTAA
2721 AAGTGATAGGAAAATGCTTAGATTAATATTCACCTATTCCAAGTATATTTTAAATAAAAACAGTCTTGGTAAAGAAAAAA
2801 AAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acucUGUCCAAGUACGACGAUa 5'
              ||||  |: |||||||| 
Target 5' ttcaACAGTATTTTGCTGCTAa 3'
1557 - 1578 162.00 -13.80
2
miRNA  3' acUCUGUCCAAGUACGACGAUa 5'
            | | ||||  | ||||||| 
Target 5' ctAAAGAGGTAGA-GCTGCTAc 3'
2015 - 2035 155.00 -13.80
3
miRNA  3' acUCUGUC---CA-AGU-ACGACGAUa 5'
            ||:|||   || ||| ||:||||| 
Target 5' taAGGCAGTGTGTATCACTGTTGCTAa 3'
1494 - 1520 152.00 -17.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
976731 654 ClinVar
559376 684 ClinVar
COSN1807631 17 COSMIC
COSN24400575 47 COSMIC
COSN6155311 148 COSMIC
COSN15188540 341 COSMIC
COSN22464639 432 COSMIC
COSN9867096 603 COSMIC
COSM7257000 649 COSMIC
COSM9099069 668 COSMIC
COSM4775480 724 COSMIC
COSM7766220 739 COSMIC
COSN5270158 804 COSMIC
COSN30475230 836 COSMIC
COSN31511521 836 COSMIC
COSN9117402 890 COSMIC
COSN31530005 913 COSMIC
COSN28776638 962 COSMIC
COSN6155310 1107 COSMIC
COSN1807630 1221 COSMIC
COSN20097404 1393 COSMIC
COSN27477780 1393 COSMIC
COSN27385893 1394 COSMIC
COSN20097398 1398 COSMIC
COSN31959800 2082 COSMIC
COSN30295287 2287 COSMIC
COSN28198040 2504 COSMIC
COSN8344659 2535 COSMIC
COSN20097392 2683 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs11545710 7 dbSNP
rs1320884346 10 dbSNP
rs1031065098 12 dbSNP
rs1268342348 13 dbSNP
rs1197356470 15 dbSNP
rs754104094 16 dbSNP
rs1402084450 24 dbSNP
rs767281917 27 dbSNP
rs1204295769 30 dbSNP
rs368778713 33 dbSNP
rs774235101 38 dbSNP
rs1481069767 39 dbSNP
rs1370149557 40 dbSNP
rs112024158 42 dbSNP
rs1345423743 43 dbSNP
rs762468869 46 dbSNP
rs1014580252 49 dbSNP
rs1174570223 57 dbSNP
rs1356551610 63 dbSNP
rs936204348 66 dbSNP
rs924871978 72 dbSNP
rs1302631707 78 dbSNP
rs535801164 84 dbSNP
rs1346023302 91 dbSNP
rs1406720919 93 dbSNP
rs571895706 94 dbSNP
rs894432078 95 dbSNP
rs1215006630 99 dbSNP
rs1158828802 111 dbSNP
rs188186657 118 dbSNP
rs567032861 122 dbSNP
rs374434508 128 dbSNP
rs977594277 131 dbSNP
rs1471832063 136 dbSNP
rs930278281 140 dbSNP
rs1249122240 142 dbSNP
rs754809816 156 dbSNP
rs268223 163 dbSNP
rs1036046437 169 dbSNP
rs766609331 170 dbSNP
rs763044680 179 dbSNP
rs1016855517 183 dbSNP
rs1187482607 187 dbSNP
rs1207416017 189 dbSNP
rs1423007483 189 dbSNP
rs984097042 191 dbSNP
rs143234192 200 dbSNP
rs1026671597 212 dbSNP
rs868560431 215 dbSNP
rs1296254658 221 dbSNP
rs1268730227 222 dbSNP
rs527929781 223 dbSNP
rs901710317 231 dbSNP
rs1326877041 235 dbSNP
rs1271750604 237 dbSNP
rs1315099287 239 dbSNP
rs1018695834 240 dbSNP
rs1396897189 264 dbSNP
rs1378725028 279 dbSNP
rs987689673 285 dbSNP
rs1315362345 302 dbSNP
rs1360966210 316 dbSNP
rs1213893690 319 dbSNP
rs1282696036 327 dbSNP
rs115076542 330 dbSNP
rs1433008681 341 dbSNP
rs1216901282 343 dbSNP
rs1244216200 346 dbSNP
rs1443219992 347 dbSNP
rs1183192434 357 dbSNP
rs1386158196 370 dbSNP
rs1446460958 375 dbSNP
rs1389966606 386 dbSNP
rs184571077 400 dbSNP
rs1401242810 401 dbSNP
rs61204490 428 dbSNP
rs999880859 429 dbSNP
rs533225387 431 dbSNP
rs958003686 433 dbSNP
rs1336961882 442 dbSNP
rs1420542698 446 dbSNP
rs1031033993 448 dbSNP
rs903417847 452 dbSNP
rs1278474862 459 dbSNP
rs1350525379 465 dbSNP
rs1000006288 471 dbSNP
rs1287002363 478 dbSNP
rs970872735 482 dbSNP
rs80046353 491 dbSNP
rs1243908249 499 dbSNP
rs1179694785 505 dbSNP
rs1014050530 509 dbSNP
rs950242414 512 dbSNP
rs1470578887 516 dbSNP
rs112403457 523 dbSNP
rs1055896799 525 dbSNP
rs1469043996 541 dbSNP
rs1337150751 542 dbSNP
rs1407788246 543 dbSNP
rs937397375 546 dbSNP
rs1389341566 558 dbSNP
rs573097656 563 dbSNP
rs561077001 576 dbSNP
rs1208093217 578 dbSNP
rs111351205 583 dbSNP
rs575168732 589 dbSNP
rs112693157 590 dbSNP
rs940426045 596 dbSNP
rs556971642 597 dbSNP
rs769389090 602 dbSNP
rs772583219 604 dbSNP
rs1367889493 607 dbSNP
rs769413346 608 dbSNP
rs750331218 610 dbSNP
rs919175870 614 dbSNP
rs139853278 622 dbSNP
rs776445504 628 dbSNP
rs1469286640 629 dbSNP
rs769099665 630 dbSNP
rs372858991 633 dbSNP
rs1434932866 635 dbSNP
rs577775985 636 dbSNP
rs1184089841 642 dbSNP
rs1007412561 644 dbSNP
rs758815637 646 dbSNP
rs989715676 649 dbSNP
rs368481568 651 dbSNP
rs1431125989 652 dbSNP
rs778823062 653 dbSNP
rs757411192 654 dbSNP
rs1199660343 655 dbSNP
rs1323463815 656 dbSNP
rs953085299 657 dbSNP
rs754014046 659 dbSNP
rs777341021 660 dbSNP
rs1312301235 669 dbSNP
rs1396784411 681 dbSNP
rs8106 684 dbSNP
rs534857186 690 dbSNP
rs1300782242 691 dbSNP
rs1204950100 705 dbSNP
rs1375063191 711 dbSNP
rs1331795591 713 dbSNP
rs1244408492 714 dbSNP
rs1358193626 715 dbSNP
rs1297659376 720 dbSNP
rs1451570782 721 dbSNP
rs1403846754 725 dbSNP
rs1338580288 726 dbSNP
rs1466461225 728 dbSNP
rs766254921 729 dbSNP
rs146174090 732 dbSNP
rs1324348155 733 dbSNP
rs1062642 741 dbSNP
rs764602797 742 dbSNP
rs761438467 745 dbSNP
rs776355506 750 dbSNP
rs777867642 768 dbSNP
rs756169521 769 dbSNP
rs761145834 773 dbSNP
rs768433692 774 dbSNP
rs1062643 777 dbSNP
rs1062644 781 dbSNP
rs371891238 782 dbSNP
rs772522917 793 dbSNP
rs746341847 794 dbSNP
rs779501762 796 dbSNP
rs1062645 797 dbSNP
rs146499950 804 dbSNP
rs200123454 805 dbSNP
rs1490220591 810 dbSNP
rs748839232 819 dbSNP
rs1200020514 825 dbSNP
rs1062646 826 dbSNP
rs1269405203 827 dbSNP
rs958507662 836 dbSNP
rs1210175692 837 dbSNP
rs1034168986 839 dbSNP
rs1062647 840 dbSNP
rs537727494 843 dbSNP
rs1161336664 846 dbSNP
rs1263878932 846 dbSNP
rs532045372 847 dbSNP
rs1393528807 848 dbSNP
rs1062648 850 dbSNP
rs1380816592 852 dbSNP
rs765004350 852 dbSNP
rs193202175 854 dbSNP
rs1062649 862 dbSNP
rs899121394 869 dbSNP
rs1226292303 870 dbSNP
rs1015000033 875 dbSNP
rs1358813357 877 dbSNP
rs532165725 879 dbSNP
rs1062650 880 dbSNP
rs890123484 882 dbSNP
rs1302623408 887 dbSNP
rs1262143242 896 dbSNP
rs189393963 904 dbSNP
rs931745403 908 dbSNP
rs1053993765 914 dbSNP
rs1366005147 923 dbSNP
rs1164935139 932 dbSNP
rs528317882 932 dbSNP
rs1431183391 933 dbSNP
rs1370660635 943 dbSNP
rs1452285275 944 dbSNP
rs1288844125 946 dbSNP
rs370822498 958 dbSNP
rs1437806334 961 dbSNP
rs77008436 961 dbSNP
rs2288960 962 dbSNP
rs563286372 973 dbSNP
rs1199551112 980 dbSNP
rs1238205491 981 dbSNP
rs1432370062 986 dbSNP
rs929992695 997 dbSNP
rs918545565 1004 dbSNP
rs1184081407 1017 dbSNP
rs1483471457 1024 dbSNP
rs544978451 1026 dbSNP
rs184216619 1030 dbSNP
rs917930465 1035 dbSNP
rs911830841 1049 dbSNP
rs990900853 1052 dbSNP
rs959477568 1053 dbSNP
rs1364937288 1063 dbSNP
rs1034137576 1085 dbSNP
rs985943314 1090 dbSNP
rs1174765810 1094 dbSNP
rs1405561965 1109 dbSNP
rs1453629056 1110 dbSNP
rs1304852935 1112 dbSNP
rs953223121 1119 dbSNP
rs1371274662 1121 dbSNP
rs1390954566 1123 dbSNP
rs1307555136 1132 dbSNP
rs1331145677 1137 dbSNP
rs1221417744 1139 dbSNP
rs73039758 1140 dbSNP
rs1324059940 1148 dbSNP
rs1211757981 1154 dbSNP
rs1347281115 1160 dbSNP
rs1480019072 1163 dbSNP
rs1000313646 1170 dbSNP
rs963184304 1171 dbSNP
rs1233244929 1174 dbSNP
rs1014807218 1182 dbSNP
rs1005218962 1201 dbSNP
rs34269513 1202 dbSNP
rs890111689 1202 dbSNP
rs1178488210 1203 dbSNP
rs574185797 1208 dbSNP
rs1020341358 1218 dbSNP
rs1013939297 1231 dbSNP
rs1290538189 1236 dbSNP
rs1461484314 1238 dbSNP
rs555900989 1253 dbSNP
rs1410856761 1255 dbSNP
rs896036128 1261 dbSNP
rs1352208906 1273 dbSNP
rs1403006475 1274 dbSNP
rs1282609697 1275 dbSNP
rs995919999 1288 dbSNP
rs537360056 1303 dbSNP
rs1034590631 1305 dbSNP
rs367769912 1306 dbSNP
rs1001649088 1307 dbSNP
rs900294814 1318 dbSNP
rs888652020 1322 dbSNP
rs1276127765 1324 dbSNP
rs1489660376 1335 dbSNP
rs1053536337 1338 dbSNP
rs1048548476 1342 dbSNP
rs1307071101 1343 dbSNP
rs1478526122 1349 dbSNP
rs1193288346 1356 dbSNP
rs1389148890 1358 dbSNP
rs936789703 1362 dbSNP
rs201731200 1393 dbSNP
rs200593405 1394 dbSNP
rs57022618 1397 dbSNP
rs765925401 1397 dbSNP
rs201725055 1399 dbSNP
rs200805026 1400 dbSNP
rs74363296 1401 dbSNP
rs138006867 1402 dbSNP
rs58350508 1402 dbSNP
rs71405956 1402 dbSNP
rs751115247 1402 dbSNP
rs1465421012 1403 dbSNP
rs569976256 1414 dbSNP
rs1161043593 1422 dbSNP
rs1041421460 1425 dbSNP
rs938094132 1438 dbSNP
rs944076657 1443 dbSNP
rs919970342 1450 dbSNP
rs1180367641 1456 dbSNP
rs557734932 1463 dbSNP
rs1361073307 1464 dbSNP
rs539497755 1467 dbSNP
rs1214763761 1469 dbSNP
rs974134970 1477 dbSNP
rs1444197703 1487 dbSNP
rs565729588 1489 dbSNP
rs986081087 1492 dbSNP
rs1291601913 1500 dbSNP
rs907717406 1500 dbSNP
rs1373996258 1507 dbSNP
rs931887844 1518 dbSNP
rs925741589 1520 dbSNP
rs1240701673 1521 dbSNP
rs1170794270 1529 dbSNP
rs1485771001 1537 dbSNP
rs983376533 1540 dbSNP
rs1442800096 1542 dbSNP
rs978630396 1547 dbSNP
rs1229364935 1553 dbSNP
rs186887925 1555 dbSNP
rs1020053831 1556 dbSNP
rs1029997109 1564 dbSNP
rs182384661 1572 dbSNP
rs1341893815 1574 dbSNP
rs1334175886 1575 dbSNP
rs959730923 1584 dbSNP
rs1034560896 1585 dbSNP
rs1380125645 1594 dbSNP
rs567368388 1598 dbSNP
rs1244544859 1604 dbSNP
rs1315161891 1609 dbSNP
rs549125130 1615 dbSNP
rs1403764006 1622 dbSNP
rs193064990 1623 dbSNP
rs771737602 1625 dbSNP
rs1230500482 1634 dbSNP
rs1282854035 1636 dbSNP
rs1316687255 1637 dbSNP
rs189212387 1639 dbSNP
rs1209766152 1642 dbSNP
rs1250064611 1645 dbSNP
rs1460176702 1646 dbSNP
rs1322511653 1650 dbSNP
rs888707716 1651 dbSNP
rs1027541239 1652 dbSNP
rs1238094643 1656 dbSNP
rs1473854890 1658 dbSNP
rs1156728868 1672 dbSNP
rs1407178859 1673 dbSNP
rs545317291 1680 dbSNP
rs994367084 1682 dbSNP
rs376680344 1685 dbSNP
rs1457562800 1687 dbSNP
rs1000635497 1688 dbSNP
rs1411047463 1690 dbSNP
rs1156599313 1695 dbSNP
rs1403378620 1698 dbSNP
rs1473865458 1699 dbSNP
rs1337031847 1706 dbSNP
rs1341741691 1707 dbSNP
rs79186086 1710 dbSNP
rs1041164426 1714 dbSNP
rs944030144 1719 dbSNP
rs889831720 1736 dbSNP
rs1229352682 1742 dbSNP
rs1440812732 1746 dbSNP
rs1042978948 1759 dbSNP
rs1203266105 1764 dbSNP
rs1279675256 1770 dbSNP
rs1444144429 1775 dbSNP
rs1049765141 1777 dbSNP
rs1179752935 1778 dbSNP
rs1232189357 1779 dbSNP
rs564103733 1780 dbSNP
rs1209963037 1794 dbSNP
rs931856688 1796 dbSNP
rs183413738 1806 dbSNP
rs1469164274 1807 dbSNP
rs978983320 1811 dbSNP
rs1172790406 1812 dbSNP
rs1403927548 1814 dbSNP
rs268222 1818 dbSNP
rs1327641411 1820 dbSNP
rs1055305930 1821 dbSNP
rs1410953406 1823 dbSNP
rs1290821244 1827 dbSNP
rs564939857 1828 dbSNP
rs937978112 1832 dbSNP
rs912962807 1858 dbSNP
rs1223293498 1863 dbSNP
rs992629595 1865 dbSNP
rs919937753 1881 dbSNP
rs573647375 1887 dbSNP
rs555692544 1892 dbSNP
rs779644368 1894 dbSNP
rs1483444221 1913 dbSNP
rs940131820 1924 dbSNP
rs907695628 1930 dbSNP
rs1266760184 1942 dbSNP
rs1479957116 1947 dbSNP
rs1199312746 1948 dbSNP
rs1378965536 1950 dbSNP
rs1474235913 1951 dbSNP
rs1380001712 1954 dbSNP
rs979753161 1973 dbSNP
rs1310326472 1976 dbSNP
rs1364255443 1977 dbSNP
rs1299729321 1979 dbSNP
rs1302435564 1979 dbSNP
rs1386520555 1979 dbSNP
rs983730802 1980 dbSNP
rs1269902097 1982 dbSNP
rs954573532 1984 dbSNP
rs923148508 1991 dbSNP
rs952943907 1995 dbSNP
rs115728447 1996 dbSNP
rs994730735 2000 dbSNP
rs1315903685 2004 dbSNP
rs961601772 2006 dbSNP
rs1020115168 2011 dbSNP
rs1445108547 2017 dbSNP
rs1192008091 2018 dbSNP
rs1390417185 2020 dbSNP
rs1008280837 2023 dbSNP
rs1406912366 2036 dbSNP
rs1450718691 2037 dbSNP
rs1161164999 2038 dbSNP
rs1391688835 2039 dbSNP
rs80154192 2044 dbSNP
rs1393318449 2053 dbSNP
rs139204706 2066 dbSNP
rs1320079120 2072 dbSNP
rs191880881 2082 dbSNP
rs1437319925 2086 dbSNP
rs572138554 2088 dbSNP
rs966896106 2089 dbSNP
rs750668746 2091 dbSNP
rs765492120 2102 dbSNP
rs1449327485 2107 dbSNP
rs1014131079 2109 dbSNP
rs896658799 2113 dbSNP
rs1204334656 2115 dbSNP
rs1055273357 2116 dbSNP
rs1452588299 2118 dbSNP
rs1290117001 2124 dbSNP
rs150784838 2125 dbSNP
rs913023553 2140 dbSNP
rs72929310 2147 dbSNP
rs764730555 2148 dbSNP
rs1370720711 2149 dbSNP
rs1364326079 2173 dbSNP
rs369861964 2174 dbSNP
rs71419425 2175 dbSNP
rs1437522376 2178 dbSNP
rs1335018123 2180 dbSNP
rs1378527491 2191 dbSNP
rs940118120 2192 dbSNP
rs1331529010 2195 dbSNP
rs887153880 2200 dbSNP
rs1227501721 2206 dbSNP
rs1268499852 2220 dbSNP
rs1330995637 2221 dbSNP
rs1201376576 2227 dbSNP
rs142282617 2229 dbSNP
rs1483259523 2236 dbSNP
rs1183105487 2237 dbSNP
rs1258826365 2248 dbSNP
rs185300696 2255 dbSNP
rs1417877813 2256 dbSNP
rs1182155906 2258 dbSNP
rs952410786 2261 dbSNP
rs1459216743 2268 dbSNP
rs920164347 2271 dbSNP
rs374988786 2273 dbSNP
rs1169244479 2290 dbSNP
rs569858236 2302 dbSNP
rs543550219 2310 dbSNP
rs565585513 2312 dbSNP
rs1409100376 2318 dbSNP
rs1478552910 2320 dbSNP
rs1288982048 2334 dbSNP
rs1246423932 2335 dbSNP
rs1008418021 2340 dbSNP
rs1221480853 2341 dbSNP
rs1197733053 2350 dbSNP
rs185584 2351 dbSNP
rs1249091238 2355 dbSNP
rs1028439308 2365 dbSNP
rs1482465898 2372 dbSNP
rs1000857866 2377 dbSNP
rs903890464 2384 dbSNP
rs1253242431 2388 dbSNP
rs1473737676 2389 dbSNP
rs979545389 2390 dbSNP
rs1205219752 2391 dbSNP
rs1433959808 2396 dbSNP
rs767831837 2397 dbSNP
rs1270783830 2400 dbSNP
rs1429251782 2401 dbSNP
rs1308494125 2409 dbSNP
rs372295166 2412 dbSNP
rs11885686 2413 dbSNP
rs1292754592 2418 dbSNP
rs891722099 2419 dbSNP
rs1368104414 2420 dbSNP
rs1220566825 2421 dbSNP
rs182581749 2422 dbSNP
rs1273965426 2426 dbSNP
rs1056871831 2429 dbSNP
rs938544280 2444 dbSNP
rs1275921181 2446 dbSNP
rs1352513558 2448 dbSNP
rs1220067394 2449 dbSNP
rs528981782 2450 dbSNP
rs189602479 2453 dbSNP
rs1388562235 2458 dbSNP
rs1448873879 2462 dbSNP
rs1044159378 2475 dbSNP
rs1391895398 2493 dbSNP
rs930979183 2497 dbSNP
rs1033831639 2500 dbSNP
rs1178861084 2500 dbSNP
rs772783284 2504 dbSNP
rs1286699879 2506 dbSNP
rs972821792 2507 dbSNP
rs1435127358 2516 dbSNP
rs1299150251 2517 dbSNP
rs1017146228 2520 dbSNP
rs1227096482 2521 dbSNP
rs769468386 2523 dbSNP
rs1289858712 2531 dbSNP
rs1322635862 2536 dbSNP
rs1224240167 2537 dbSNP
rs940261293 2539 dbSNP
rs1174679909 2542 dbSNP
rs747677771 2543 dbSNP
rs201877425 2555 dbSNP
rs776076597 2566 dbSNP
rs768582634 2567 dbSNP
rs1162575212 2572 dbSNP
rs543140467 2574 dbSNP
rs780027708 2585 dbSNP
rs758194002 2586 dbSNP
rs1051593257 2588 dbSNP
rs934115606 2589 dbSNP
rs1230605422 2590 dbSNP
rs979470473 2591 dbSNP
rs901665353 2595 dbSNP
rs1442879198 2599 dbSNP
rs968544700 2605 dbSNP
rs576260526 2607 dbSNP
rs1266606578 2615 dbSNP
rs1328957544 2620 dbSNP
rs1209592213 2621 dbSNP
rs1270316347 2621 dbSNP
rs1440717320 2623 dbSNP
rs1186938861 2625 dbSNP
rs943263989 2632 dbSNP
rs185020702 2633 dbSNP
rs1020927379 2637 dbSNP
rs925152234 2639 dbSNP
rs758839776 2643 dbSNP
rs1179975367 2657 dbSNP
rs1410946535 2667 dbSNP
rs375508115 2668 dbSNP
rs1160845561 2671 dbSNP
rs1289202634 2685 dbSNP
rs67632864 2687 dbSNP
rs10701310 2688 dbSNP
rs113992146 2688 dbSNP
rs201179783 2688 dbSNP
rs374553351 2690 dbSNP
rs945006328 2690 dbSNP
rs1371475676 2691 dbSNP
rs369760584 2691 dbSNP
rs1304613172 2693 dbSNP
rs1010003683 2697 dbSNP
rs891695422 2700 dbSNP
rs576255712 2704 dbSNP
rs1035602380 2705 dbSNP
rs1229411332 2714 dbSNP
rs148707747 2717 dbSNP
rs980867900 2719 dbSNP
rs1200140803 2723 dbSNP
rs1279384342 2745 dbSNP
rs1002653812 2750 dbSNP
rs61053606 2759 dbSNP
rs1044212633 2784 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 518.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' acucUGUCCAAGUACGACGAUa 5'
              ||||  |: |||||||| 
Target 5' uucaACAGUAUUUUGCUGCUAa 3'
2 - 23
Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000284727.4 | 3UTR | GUUCAACAGUAUUUUGCUGCUAAUACUUUAUGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
180 hsa-miR-4524a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055251 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT055826 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT060573 CCND1 cyclin D1 2 2
MIRT061013 C1ORF21 chromosome 1 open reading frame 21 2 6
MIRT064694 CCND2 cyclin D2 2 4
MIRT075268 SNTB2 syntrophin beta 2 2 4
MIRT079668 NAPG NSF attachment protein gamma 2 12
MIRT081651 CCNE1 cyclin E1 2 4
MIRT082996 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT083463 RALGAPB Ral GTPase activating protein non-catalytic beta subunit 2 4
MIRT085755 RIF1 replication timing regulatory factor 1 2 2
MIRT086022 UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative) 2 2
MIRT087431 ZNRF3 zinc and ring finger 3 2 2
MIRT088786 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT089221 ACTR2 ARP2 actin related protein 2 homolog 2 2
MIRT093696 PI4K2B phosphatidylinositol 4-kinase type 2 beta 2 6
MIRT095090 SEC24A SEC24 homolog A, COPII coat complex component 2 4
MIRT096249 CANX calnexin 2 2
MIRT100215 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT100746 VEGFA vascular endothelial growth factor A 2 12
MIRT100904 CD2AP CD2 associated protein 2 2
MIRT102647 UBN2 ubinuclein 2 2 10
MIRT103882 FOXK1 forkhead box K1 2 2
MIRT104246 DMTF1 cyclin D binding myb like transcription factor 1 2 2
MIRT106310 ZFHX4 zinc finger homeobox 4 2 6
MIRT107696 RECK reversion inducing cysteine rich protein with kazal motifs 2 2
MIRT114943 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT117671 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT133799 SKI SKI proto-oncogene 2 2
MIRT140167 SPRED1 sprouty related EVH1 domain containing 1 2 2
MIRT142279 DCTN5 dynactin subunit 5 2 8
MIRT143288 N4BP1 NEDD4 binding protein 1 2 2
MIRT165939 CREBRF CREB3 regulatory factor 2 2
MIRT175251 PSAT1 phosphoserine aminotransferase 1 2 6
MIRT186381 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT191470 PPM1A protein phosphatase, Mg2+/Mn2+ dependent 1A 2 2
MIRT196480 TAOK1 TAO kinase 1 2 2
MIRT201470 SNRPB2 small nuclear ribonucleoprotein polypeptide B2 2 8
MIRT204615 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 8
MIRT204646 MOB4 MOB family member 4, phocein 2 8
MIRT204749 BZW1 basic leucine zipper and W2 domains 1 2 12
MIRT206031 NUP50 nucleoporin 50 2 6
MIRT211196 FGF2 fibroblast growth factor 2 2 4
MIRT229353 ZNF449 zinc finger protein 449 2 2
MIRT247138 WEE1 WEE1 G2 checkpoint kinase 2 4
MIRT249461 ZNF691 zinc finger protein 691 2 4
MIRT256314 CDC42SE2 CDC42 small effector 2 2 2
MIRT258419 WIPI2 WD repeat domain, phosphoinositide interacting 2 2 2
MIRT265083 CHEK1 checkpoint kinase 1 2 2
MIRT270561 SETD1B SET domain containing 1B 2 2
MIRT274749 RAB3IP RAB3A interacting protein 2 2
MIRT277515 PPP2R5C protein phosphatase 2 regulatory subunit B'gamma 2 4
MIRT289642 CBX2 chromobox 2 2 2
MIRT301001 MTMR3 myotubularin related protein 3 2 2
MIRT307149 CTDSPL CTD small phosphatase like 2 4
MIRT309021 USP53 ubiquitin specific peptidase 53 2 2
MIRT314100 PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 2 8
MIRT319338 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 2 2
MIRT320619 ZNRF2 zinc and ring finger 2 2 2
MIRT324285 LURAP1L leucine rich adaptor protein 1 like 2 2
MIRT446498 ASCC1 activating signal cointegrator 1 complex subunit 1 2 2
MIRT448437 TLL1 tolloid like 1 2 2
MIRT461537 ACTR3B ARP3 actin related protein 3 homolog B 2 2
MIRT463162 ZNF367 zinc finger protein 367 2 10
MIRT463493 ZC3H10 zinc finger CCCH-type containing 10 2 2
MIRT465154 TSC22D2 TSC22 domain family member 2 2 2
MIRT466418 TFAP2A transcription factor AP-2 alpha 2 8
MIRT468278 SFT2D2 SFT2 domain containing 2 2 2
MIRT469399 REL REL proto-oncogene, NF-kB subunit 2 6
MIRT471941 NR6A1 nuclear receptor subfamily 6 group A member 1 2 2
MIRT473688 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT479618 CDC25A cell division cycle 25A 2 2
MIRT482098 AKT3 AKT serine/threonine kinase 3 2 4
MIRT483995 ATAD5 ATPase family, AAA domain containing 5 2 12
MIRT485205 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 8
MIRT498763 C3orf38 chromosome 3 open reading frame 38 2 8
MIRT498961 ORC4 origin recognition complex subunit 4 2 8
MIRT499440 ODF2L outer dense fiber of sperm tails 2 like 2 8
MIRT500080 L2HGDH L-2-hydroxyglutarate dehydrogenase 2 8
MIRT500305 ZNF622 zinc finger protein 622 2 8
MIRT500410 ZMAT3 zinc finger matrin-type 3 2 8
MIRT500789 TLK1 tousled like kinase 1 2 6
MIRT500930 SRPR SRP receptor alpha subunit 2 6
MIRT500943 SREK1 splicing regulatory glutamic acid and lysine rich protein 1 2 8
MIRT501068 SMAD7 SMAD family member 7 2 8
MIRT501711 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT502627 DDX3X DEAD-box helicase 3, X-linked 2 8
MIRT502910 CDCA4 cell division cycle associated 4 2 8
MIRT502935 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504531 ZNF620 zinc finger protein 620 2 6
MIRT505106 YTHDC1 YTH domain containing 1 2 6
MIRT505337 TMEM245 transmembrane protein 245 2 6
MIRT505383 TMEM100 transmembrane protein 100 2 2
MIRT505678 SESTD1 SEC14 and spectrin domain containing 1 2 6
MIRT506157 PLAG1 PLAG1 zinc finger 2 8
MIRT506183 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 6
MIRT506475 MYO5A myosin VA 2 6
MIRT506826 KIF23 kinesin family member 23 2 6
MIRT507160 GAS2L3 growth arrest specific 2 like 3 2 2
MIRT507511 DYNLL2 dynein light chain LC8-type 2 2 4
MIRT507845 CCNE2 cyclin E2 2 6
MIRT510403 ZNF507 zinc finger protein 507 2 2
MIRT518078 TRIM35 tripartite motif containing 35 2 2
MIRT518982 NNT nicotinamide nucleotide transhydrogenase 2 4
MIRT521045 SLC2A3 solute carrier family 2 member 3 2 4
MIRT521190 SBNO1 strawberry notch homolog 1 2 6
MIRT522088 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 4
MIRT524846 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT527787 TMEM44 transmembrane protein 44 2 4
MIRT537803 EFNB2 ephrin B2 2 4
MIRT540830 GNAT1 G protein subunit alpha transducin 1 2 4
MIRT541140 PISD phosphatidylserine decarboxylase 2 2
MIRT541419 CBX4 chromobox 4 2 2
MIRT543517 PRSS21 protease, serine 21 2 2
MIRT543824 GSG1 germ cell associated 1 2 2
MIRT544959 UGT2B4 UDP glucuronosyltransferase family 2 member B4 2 2
MIRT545179 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 4
MIRT545335 CCDC83 coiled-coil domain containing 83 2 2
MIRT545518 RSL24D1 ribosomal L24 domain containing 1 2 2
MIRT545670 DECR1 2,4-dienoyl-CoA reductase 1 2 2
MIRT545931 ZBTB44 zinc finger and BTB domain containing 44 2 4
MIRT546102 USP48 ubiquitin specific peptidase 48 2 4
MIRT546598 SALL1 spalt like transcription factor 1 2 4
MIRT546626 RTN4 reticulon 4 2 2
MIRT547651 KPNA3 karyopherin subunit alpha 3 2 2
MIRT547987 HCFC2 host cell factor C2 2 4
MIRT548717 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT548931 CDK17 cyclin dependent kinase 17 2 2
MIRT549067 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT549266 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT550460 OSCAR osteoclast associated, immunoglobulin-like receptor 2 4
MIRT550806 FAM229B family with sequence similarity 229 member B 2 2
MIRT552024 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT552334 ZNF704 zinc finger protein 704 2 2
MIRT552732 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT553795 SZRD1 SUZ RNA binding domain containing 1 2 4
MIRT554694 RNF149 ring finger protein 149 2 2
MIRT555133 PTPRD protein tyrosine phosphatase, receptor type D 2 2
MIRT555264 PRDM4 PR/SET domain 4 2 2
MIRT556848 KANK1 KN motif and ankyrin repeat domains 1 2 4
MIRT557474 GPR27 G protein-coupled receptor 27 2 4
MIRT558018 EXT1 exostosin glycosyltransferase 1 2 2
MIRT558498 CYP26B1 cytochrome P450 family 26 subfamily B member 1 2 4
MIRT558579 CREBL2 cAMP responsive element binding protein like 2 2 4
MIRT558610 COX6B1 cytochrome c oxidase subunit 6B1 2 4
MIRT558650 CNKSR3 CNKSR family member 3 2 2
MIRT558986 CA8 carbonic anhydrase 8 2 2
MIRT559141 BTN3A3 butyrophilin subfamily 3 member A3 2 2
MIRT559327 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 2 2
MIRT562021 LANCL1 LanC like 1 2 2
MIRT562869 KIAA1456 KIAA1456 2 2
MIRT563074 SLC25A12 solute carrier family 25 member 12 2 2
MIRT563496 DLGAP3 DLG associated protein 3 2 2
MIRT563890 RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 2 2
MIRT564311 CCNT1 cyclin T1 2 2
MIRT564942 XKR7 XK related 7 2 2
MIRT564979 WNK3 WNK lysine deficient protein kinase 3 2 2
MIRT565423 TEF TEF, PAR bZIP transcription factor 2 2
MIRT566824 MAP3K7 mitogen-activated protein kinase kinase kinase 7 2 2
MIRT571961 KIF5B kinesin family member 5B 2 2
MIRT575877 Cask calcium/calmodulin-dependent serine protein kinase (MAGUK family) 2 3
MIRT576523 Txlna taxilin alpha 2 2
MIRT614693 TRAK1 trafficking kinesin protein 1 2 2
MIRT616065 ZC3H14 zinc finger CCCH-type containing 14 2 2
MIRT618838 ASAH2B N-acylsphingosine amidohydrolase 2B 2 2
MIRT624626 ATXN2 ataxin 2 2 2
MIRT624652 ASAH2 N-acylsphingosine amidohydrolase 2 2 2
MIRT640314 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT659248 CUL3 cullin 3 2 2
MIRT680972 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT682261 RS1 retinoschisin 1 2 2
MIRT682505 GLP2R glucagon like peptide 2 receptor 2 2
MIRT693904 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 2 2
MIRT699214 SLCO3A1 solute carrier organic anion transporter family member 3A1 2 2
MIRT699373 SLC30A6 solute carrier family 30 member 6 2 2
MIRT699451 SLC16A9 solute carrier family 16 member 9 2 2
MIRT701230 OCRL OCRL, inositol polyphosphate-5-phosphatase 2 2
MIRT702849 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT706163 CASK calcium/calmodulin dependent serine protein kinase 2 3
MIRT718990 UTP15 UTP15, small subunit processome component 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4524a-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-4524a-5p Cetuximab resistant tissue (colorectal carcinoma)

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