miRTarBase - #MIRT559515


—
pre-miRNA Information
pre-miRNA hsa-mir-3119-1   
Genomic Coordinates chr1: 170151378 - 170151462
Description Homo sapiens miR-3119-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3119-2   
Genomic Coordinates chr1: 170151378 - 170151462
Description Homo sapiens miR-3119-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3119
Sequence 9| UGGCUUUUAACUUUGAUGGC |28
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs976695651 1 dbSNP
rs924732934 1 dbSNP
rs537840374 2 dbSNP
rs1264087496 6 dbSNP
rs1484055858 9 dbSNP
rs1467832924 10 dbSNP
rs1198335970 11 dbSNP
rs1431115212 12 dbSNP
rs1176953550 16 dbSNP
Putative Targets

Gene Information
Gene Symbol ARHGEF26   
Synonyms CSGEF, HMFN1864, SGEF
Description Rho guanine nucleotide exchange factor 26
Transcript NM_015595   
Expression
Putative miRNA Targets on ARHGEF26
3'UTR of ARHGEF26
(miRNA target sites are highlighted)		 
>ARHGEF26|NM_015595|3'UTR
   1 TCTCTCAGATGGTCTTTTGTTACTGCAAGATTTGCACGACACTTACCGGGCTGGTTGGTTCTGGGCTAGTTTTATTGTTA
  81 ATTTTGTCACAGCCTATTTAATTAAAAGAACGAAAACACTTGCCTTTAAGCTTGCCAGGTTGTTCTGCTCTCTCATGAGA
 161 AGAGCTTGGATACAGTGAGTTTGCACAGCTCAGTTTTTACCTAACCACACACTTGCAGACCTCCTGAGGTACACAGAATA
 241 GCTGAGCAGTTCACTTCAGGGATCAGGTCATCTCTGCTCCTCCTAGTTTCACCATGTTCTGGCAATAAAAAACACATATT
 321 ATATCCTGGTTTTCTCTATCCTTGCATTACTAAGGTGACTGTCTCTCTTTATACATCCTTGTATGGTTCTCCCAGTATTA
 401 GCAAGATTGTATATCTGTAAAGAATGTCCAGTTTTGTAAATATTTCCCTGCCTTTTTTTTTCTTTTTTTACATCTGATTT
 481 TAATGCTTCGTTAACTTCAAAAGGAACTGGTAGAGTTCAGAAGGTGAGCTGTTGTTTTTCTAAACCTCTTCCCAGGAAGG
 561 GGACATTGACACTTGAATTTTTGTCACCTTTTTCCTCATTAGAAGGAAAGTAGAAAGCCTTACTTTAGGATTTTTAAAAA
 641 AAAATCCATCTCACCCCATATTGTTCTTAAATAAGTATAGACTAATTAACCTAAGCTACCTTTAACAACGTAGAATTTAG
 721 ATGGGTTCATATATGTGAGAAAAACCTGAATATAGGACAGGGGTCCTACTTTTTTCCCCACCTCTGTCGCCCAGGCTAGA
 801 GTATAGTGGTGTGATCTTGGCCCACTGCAACCTCTGCTTCCTAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAG
 881 CTGGGATTGTAAGAGTATGCCACCACGCCCAGCTACTTTTTGTATTTTTAGTAGAGACAGGGTTTCATCATGTTGGCCAG
 961 GATGGTCTCTTAACTCCTGCCCTCAAGTGATCCACCAGAGAGGAGATCCTCGGCCTCCCCAAGTGCTGGGATTATAGGCA
1041 TGAGCCACCGTGCCCAGCCTACTTTCTAATTAATTAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTCCCAAATGAGCTGA
1121 TAAAAAACTGACGTGAGGCTGCTTTGCCTTCAATAATACCTAGTTTTCAGCTGTTCCAACTCGTTTCCAAATAGAAATTA
1201 GCTGGAACACACTACAGTAATCTCAAGGAAGGGAAAATTAGGCCTTAAAAGATACCAAGAAGTCAGCATGGTACCCAATT
1281 GAAACCTTTTGACCTTAGTGGGAATTCATTCTATTTGCACTAAAAGCCTTAACTTGCTGTATTCAGAGTCCCTCTTAACT
1361 GTGAGTTTCTATAGAACTTTACTTTTTCCACTAGTGCACAGAGAGAGAAAGGTTATCTTAATAGTCGGTTTCATGGAGAT
1441 GAAGGATGGGAGATTAAGAGGGGGGAAATGATTTTTACTGGCAGCTATATTCCCTCTCTGTTCTATTTGCTTTAACAAAG
1521 GGATAAAACCTGGCAAAGTGTACATTATTGGAGGACTCAAATCTGTATGTGACATGTCCCAACTACTGTCCGCTAACTAG
1601 TTATCCAAATTGTAAAGCTACAGAAGCCCAGTTGAGGGGTAAGTGTGCCTGGCTCACACAGCCTGCACCCTGTCACCTCG
1681 GCAATGAGCCAGTGTGGGGCACTGGGGACTTCTAACCCTTGGATTGCTCTTTTTGACCTGTGCATACCTTCTAATTGTAA
1761 AATATATTTCAGACCGTGAGTACCTTGAGATCTGAGCAACTGTGTTAATGAAGTAATAGCAATGGTCCACAGTGAAAGAT
1841 GTGTTGGGGTTTGCAAAACAAGCATTCCGTCACCTCTTTAATAATGTCACAGACTTTTTAAAAGAGAGGCTATCAAGTTG
1921 TAATATAATCTGTCATGTTTTATTTAGGAAGGAAGGTAAATTTGTGCTTGCACGGGGATCATTTTGTATTATTTTTGCTA
2001 ATACCCAGTTGAAGCTAAAAAGCAACTATTTGAATCCTGTGAATTAATTTATAAGAATGTTAAACAGCTTTGGAAATACA
2081 TGCATCTTATGAATCATAGCCTTATTTAGCAAGATCAATGTTAAAGTGTTGTTATATGGCAAGTATTTAACACATTCACA
2161 GTGTTTGTTTGATTTCAACTGTGAATTGTCTTAAGTTTTTTCAAACCTAGTTGTTTCTATGGACACCTGCTCTGAATTGT
2241 ACATTGACTTCATTACTAAAGAACAAAAATGTTCATTTTTGTCCCAGTAAATTGAGACTGCTTGTACACTTTCAGAAAAA
2321 TATGTGAATTTATAAAGATTTTGTAGATACTTGT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgguagUUUCAAUUUUCGGu 5'
                ||||| :|||||| 
Target 5' agaaggAAAGTAGAAAGCCt 3'
 601 - 620 146.00 -10.70
2 
miRNA  3' cgGUAGUUUCAAUUUUCGGu 5'
            :||: :   |||||||| 
Target 5' tcTATTTGCACTAAAAGCCt 3'
 1310 - 1329 146.00 -10.10
3 
miRNA  3' cgGU-AGUUUC-AAUUUUCGgu 5'
            || |::||| | ||||||  
Target 5' ccCAGTTGAAGCTAAAAAGCaa 3'
 2004 - 2025 138.00 -8.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30449505 5 COSMIC
COSN30150808 7 COSMIC
COSN31599748 15 COSMIC
COSN7826989 48 COSMIC
COSN30166437 62 COSMIC
COSN31503473 64 COSMIC
COSN30136974 69 COSMIC
COSN30131960 93 COSMIC
COSN30145204 104 COSMIC
COSN31594451 112 COSMIC
COSN30111073 131 COSMIC
COSN30621200 131 COSMIC
COSN27289306 236 COSMIC
COSN22073957 341 COSMIC
COSN31596083 428 COSMIC
COSN29689877 462 COSMIC
COSN31531702 559 COSMIC
COSN30108184 572 COSMIC
COSN28769065 626 COSMIC
COSN25088116 631 COSMIC
COSN22581025 636 COSMIC
COSN25531710 637 COSMIC
COSN31661845 645 COSMIC
COSN31530550 698 COSMIC
COSN25086390 716 COSMIC
COSN20099277 1101 COSMIC
COSN15041961 1312 COSMIC
COSN28188445 1332 COSMIC
COSN28188608 1348 COSMIC
COSN1922531 1372 COSMIC
COSM8595133 1401 COSMIC
COSM1617088 1454 COSMIC
COSM9644403 1459 COSMIC
COSN18717783 1493 COSMIC
COSN5524284 2115 COSMIC
COSN23695788 2117 COSMIC
COSN20099278 2194 COSMIC
COSN26159032 2314 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1428961821 1 dbSNP
rs750269595 8 dbSNP
rs758413041 9 dbSNP
rs888258609 13 dbSNP
rs750481031 15 dbSNP
rs377519738 18 dbSNP
rs1316253977 24 dbSNP
rs746505732 25 dbSNP
rs768331532 28 dbSNP
rs540641593 29 dbSNP
rs1321398876 31 dbSNP
rs370706426 33 dbSNP
rs770008176 38 dbSNP
rs773642354 39 dbSNP
rs1203026674 47 dbSNP
rs774184358 48 dbSNP
rs111931094 49 dbSNP
rs867442132 52 dbSNP
rs914488688 65 dbSNP
rs1269349626 72 dbSNP
rs1225240366 75 dbSNP
rs574238956 76 dbSNP
rs905874594 87 dbSNP
rs1334943182 88 dbSNP
rs541514714 89 dbSNP
rs1404223449 93 dbSNP
rs1033265158 94 dbSNP
rs957491693 95 dbSNP
rs928503828 96 dbSNP
rs759146041 104 dbSNP
rs1343014920 112 dbSNP
rs1020700125 113 dbSNP
rs1166509771 117 dbSNP
rs1474090590 118 dbSNP
rs1369490004 121 dbSNP
rs1435030284 130 dbSNP
rs1443431773 132 dbSNP
rs966886308 137 dbSNP
rs1200189769 140 dbSNP
rs1055973878 142 dbSNP
rs976433396 143 dbSNP
rs3172332 147 dbSNP
rs1284668412 148 dbSNP
rs530595746 149 dbSNP
rs930984518 153 dbSNP
rs1263948288 154 dbSNP
rs1048023578 156 dbSNP
rs1311514308 157 dbSNP
rs953734348 163 dbSNP
rs887362151 173 dbSNP
rs1354142489 188 dbSNP
rs985306467 194 dbSNP
rs1344599302 207 dbSNP
rs909813869 209 dbSNP
rs1407364259 211 dbSNP
rs1392116740 222 dbSNP
rs552319682 223 dbSNP
rs564236945 224 dbSNP
rs1489876872 225 dbSNP
rs1223739621 242 dbSNP
rs1247181857 243 dbSNP
rs748045904 245 dbSNP
rs76419060 247 dbSNP
rs1179437675 257 dbSNP
rs150775691 268 dbSNP
rs547016438 271 dbSNP
rs137980039 272 dbSNP
rs1221708260 274 dbSNP
rs773084834 277 dbSNP
rs761646987 278 dbSNP
rs1357186049 286 dbSNP
rs958120016 287 dbSNP
rs950149019 291 dbSNP
rs535997026 295 dbSNP
rs1020950592 296 dbSNP
rs966673680 304 dbSNP
rs1449699246 306 dbSNP
rs75300872 308 dbSNP
rs1332084594 312 dbSNP
rs1438853126 312 dbSNP
rs76307090 313 dbSNP
rs1162528653 317 dbSNP
rs1363229809 318 dbSNP
rs760328213 321 dbSNP
rs142076859 323 dbSNP
rs1419731318 325 dbSNP
rs1406821426 326 dbSNP
rs536082430 327 dbSNP
rs1478788608 336 dbSNP
rs1247134255 339 dbSNP
rs905822758 341 dbSNP
rs1001543715 342 dbSNP
rs1489842242 347 dbSNP
rs770622453 353 dbSNP
rs1316360992 354 dbSNP
rs991307996 354 dbSNP
rs1282209624 355 dbSNP
rs1345964754 356 dbSNP
rs1283061716 361 dbSNP
rs369320894 362 dbSNP
rs1430576283 366 dbSNP
rs1054706718 370 dbSNP
rs142560833 381 dbSNP
rs186816650 382 dbSNP
rs1020902438 387 dbSNP
rs1354380043 388 dbSNP
rs966252125 408 dbSNP
rs1315605274 411 dbSNP
rs765045962 412 dbSNP
rs939655531 417 dbSNP
rs368516985 418 dbSNP
rs190908841 428 dbSNP
rs1041344293 429 dbSNP
rs1425712988 431 dbSNP
rs181792180 435 dbSNP
rs1240492612 442 dbSNP
rs1212263586 444 dbSNP
rs1443221066 452 dbSNP
rs1320507256 453 dbSNP
rs373595788 453 dbSNP
rs796268935 453 dbSNP
rs932826310 453 dbSNP
rs773109990 460 dbSNP
rs1279201684 462 dbSNP
rs1211744453 463 dbSNP
rs1360472782 464 dbSNP
rs1267910845 470 dbSNP
rs1290621839 471 dbSNP
rs1446366332 472 dbSNP
rs371807295 473 dbSNP
rs1249729094 475 dbSNP
rs751729715 475 dbSNP
rs146042824 477 dbSNP
rs755169120 487 dbSNP
rs972687119 490 dbSNP
rs1020980325 491 dbSNP
rs1427866162 491 dbSNP
rs918390798 497 dbSNP
rs1473549057 501 dbSNP
rs781265896 506 dbSNP
rs1473138939 509 dbSNP
rs1242587053 513 dbSNP
rs1202052133 517 dbSNP
rs949915824 524 dbSNP
rs1045811083 528 dbSNP
rs1003473812 533 dbSNP
rs776145274 535 dbSNP
rs1204194758 536 dbSNP
rs1400707034 541 dbSNP
rs927395626 542 dbSNP
rs1315388273 548 dbSNP
rs1035582794 550 dbSNP
rs1382944026 553 dbSNP
rs1313735516 561 dbSNP
rs937322483 562 dbSNP
rs1054484631 563 dbSNP
rs1436236840 567 dbSNP
rs1378585472 573 dbSNP
rs1298540546 578 dbSNP
rs1336438837 582 dbSNP
rs752783645 587 dbSNP
rs1338947599 593 dbSNP
rs959946926 596 dbSNP
rs991732212 598 dbSNP
rs1022838458 600 dbSNP
rs1384757943 603 dbSNP
rs1181813610 611 dbSNP
rs1251430164 612 dbSNP
rs1441789188 612 dbSNP
rs139964460 614 dbSNP
rs185140658 619 dbSNP
rs1284854726 621 dbSNP
rs191651 626 dbSNP
rs200844764 631 dbSNP
rs551558336 636 dbSNP
rs908274652 636 dbSNP
rs939687010 636 dbSNP
rs36086140 637 dbSNP
rs1307204716 647 dbSNP
rs773754305 647 dbSNP
rs901970703 648 dbSNP
rs1390440070 650 dbSNP
rs1202825810 651 dbSNP
rs1295064398 661 dbSNP
rs1405542694 663 dbSNP
rs1240981561 664 dbSNP
rs173328 665 dbSNP
rs1029361902 666 dbSNP
rs953817234 667 dbSNP
rs1006497030 672 dbSNP
rs1231871473 672 dbSNP
rs1417519996 672 dbSNP
rs1468137938 677 dbSNP
rs545686359 678 dbSNP
rs1016524856 679 dbSNP
rs962422884 682 dbSNP
rs1490332242 683 dbSNP
rs1157636846 691 dbSNP
rs973022035 692 dbSNP
rs73875337 697 dbSNP
rs1219647722 709 dbSNP
rs946855723 710 dbSNP
rs1042469345 711 dbSNP
rs1237965849 712 dbSNP
rs1400423589 718 dbSNP
rs971629885 721 dbSNP
rs771385286 723 dbSNP
rs1303149885 731 dbSNP
rs981312141 732 dbSNP
rs1398072162 733 dbSNP
rs753300510 737 dbSNP
rs1335296292 740 dbSNP
rs1401738690 741 dbSNP
rs1408115527 750 dbSNP
rs1385810461 756 dbSNP
rs112818315 759 dbSNP
rs1451917205 759 dbSNP
rs1329794282 760 dbSNP
rs1177645943 765 dbSNP
rs1222751157 766 dbSNP
rs13074879 768 dbSNP
rs1196521003 773 dbSNP
rs1448080586 777 dbSNP
rs1261890252 780 dbSNP
rs1203976531 782 dbSNP
rs1346848300 783 dbSNP
rs114240688 789 dbSNP
rs189664199 790 dbSNP
rs767113608 792 dbSNP
rs1322605534 795 dbSNP
rs1281104010 796 dbSNP
rs946073409 797 dbSNP
rs1326896079 804 dbSNP
rs1042331050 805 dbSNP
rs1294951272 807 dbSNP
rs1023292607 832 dbSNP
rs1404652555 833 dbSNP
rs61295486 835 dbSNP
rs902128959 838 dbSNP
rs933469800 841 dbSNP
rs1337698560 844 dbSNP
rs1469455312 849 dbSNP
rs1050581120 851 dbSNP
rs1173256547 852 dbSNP
rs952601682 857 dbSNP
rs57681652 858 dbSNP
rs889294062 859 dbSNP
rs771631446 865 dbSNP
rs1183741270 873 dbSNP
rs1015365470 881 dbSNP
rs1016684648 888 dbSNP
rs149674247 890 dbSNP
rs1460594202 891 dbSNP
rs1199324314 892 dbSNP
rs922326422 892 dbSNP
rs1376341520 893 dbSNP
rs1467879106 898 dbSNP
rs953829401 899 dbSNP
rs993881946 907 dbSNP
rs1025979588 917 dbSNP
rs1452266763 926 dbSNP
rs971362825 937 dbSNP
rs573297412 939 dbSNP
rs1333793298 949 dbSNP
rs1173413711 950 dbSNP
rs775061078 951 dbSNP
rs981259916 963 dbSNP
rs1396073775 968 dbSNP
rs1428000910 970 dbSNP
rs757732778 970 dbSNP
rs764461796 972 dbSNP
rs78732135 975 dbSNP
rs1386624875 977 dbSNP
rs1183650851 978 dbSNP
rs1443639833 983 dbSNP
rs1240841680 985 dbSNP
rs958547605 990 dbSNP
rs533425160 996 dbSNP
rs990195881 997 dbSNP
rs760160729 1003 dbSNP
rs1194072651 1012 dbSNP
rs1233749927 1013 dbSNP
rs946033706 1016 dbSNP
rs1269324216 1021 dbSNP
rs1245251664 1043 dbSNP
rs557931152 1050 dbSNP
rs923503048 1051 dbSNP
rs1206770832 1052 dbSNP
rs1335584128 1057 dbSNP
rs1327258682 1062 dbSNP
rs939475747 1064 dbSNP
rs1056468700 1066 dbSNP
rs1163704445 1067 dbSNP
rs35377864 1067 dbSNP
rs1274820476 1072 dbSNP
rs1382834017 1074 dbSNP
rs1490039677 1074 dbSNP
rs1177998613 1076 dbSNP
rs1474721087 1076 dbSNP
rs1489894374 1077 dbSNP
rs933543077 1077 dbSNP
rs1224606325 1078 dbSNP
rs1265844032 1079 dbSNP
rs1278158519 1080 dbSNP
rs1225694062 1081 dbSNP
rs1346725147 1087 dbSNP
rs1435377408 1087 dbSNP
rs895178070 1087 dbSNP
rs1319702994 1088 dbSNP
rs1347679743 1088 dbSNP
rs1200044700 1089 dbSNP
rs1400947425 1089 dbSNP
rs1406707308 1089 dbSNP
rs1012645799 1090 dbSNP
rs1050653411 1090 dbSNP
rs1198653042 1091 dbSNP
rs1447963159 1091 dbSNP
rs889243151 1091 dbSNP
rs1216513019 1092 dbSNP
rs1243969862 1092 dbSNP
rs1479410562 1092 dbSNP
rs1205786621 1093 dbSNP
rs1446639616 1093 dbSNP
rs1222286781 1094 dbSNP
rs1283041328 1094 dbSNP
rs1324769840 1094 dbSNP
rs1044340307 1095 dbSNP
rs1271437719 1095 dbSNP
rs1344260204 1096 dbSNP
rs1430773218 1096 dbSNP
rs1170707999 1097 dbSNP
rs1318188076 1097 dbSNP
rs1371301873 1098 dbSNP
rs1175422944 1099 dbSNP
rs1424066729 1099 dbSNP
rs1187210870 1100 dbSNP
rs1421485051 1100 dbSNP
rs1475156571 1100 dbSNP
rs57080627 1101 dbSNP
rs1392819027 1102 dbSNP
rs1262926105 1103 dbSNP
rs71624549 1103 dbSNP
rs413928 1104 dbSNP
rs62276966 1105 dbSNP
rs1387216760 1107 dbSNP
rs62276967 1107 dbSNP
rs1294586470 1110 dbSNP
rs1362758397 1112 dbSNP
rs1005396590 1113 dbSNP
rs1015398106 1122 dbSNP
rs369622147 1122 dbSNP
rs1294761262 1129 dbSNP
rs13095755 1129 dbSNP
rs1454295699 1130 dbSNP
rs1038519548 1133 dbSNP
rs767835260 1134 dbSNP
rs534254722 1149 dbSNP
rs1409300284 1150 dbSNP
rs994220503 1150 dbSNP
rs144429013 1154 dbSNP
rs1165486757 1157 dbSNP
rs1489757443 1158 dbSNP
rs906881803 1161 dbSNP
rs953755074 1175 dbSNP
rs985500736 1176 dbSNP
rs1002768913 1178 dbSNP
rs1204518639 1179 dbSNP
rs1034271256 1183 dbSNP
rs1210955973 1183 dbSNP
rs958495304 1184 dbSNP
rs1313991559 1191 dbSNP
rs1011445094 1192 dbSNP
rs1463810525 1204 dbSNP
rs1375348996 1206 dbSNP
rs1298525011 1207 dbSNP
rs1022127207 1209 dbSNP
rs1190799512 1211 dbSNP
rs1391056318 1213 dbSNP
rs183393374 1216 dbSNP
rs978308970 1220 dbSNP
rs924144775 1225 dbSNP
rs1370195215 1227 dbSNP
rs1458403706 1228 dbSNP
rs939510726 1229 dbSNP
rs1421099352 1234 dbSNP
rs543448114 1236 dbSNP
rs977920402 1236 dbSNP
rs1176926290 1239 dbSNP
rs1056577789 1241 dbSNP
rs375543506 1247 dbSNP
rs1271631466 1250 dbSNP
rs113040093 1256 dbSNP
rs1490382611 1257 dbSNP
rs867166047 1259 dbSNP
rs954729935 1264 dbSNP
rs986318624 1279 dbSNP
rs910833431 1280 dbSNP
rs1348584749 1282 dbSNP
rs888374925 1284 dbSNP
rs1405447703 1286 dbSNP
rs575247258 1292 dbSNP
rs1365106077 1293 dbSNP
rs1381604524 1296 dbSNP
rs369724861 1310 dbSNP
rs1393867052 1312 dbSNP
rs1037912139 1313 dbSNP
rs919661835 1314 dbSNP
rs187974509 1318 dbSNP
rs1471786161 1322 dbSNP
rs1047254282 1324 dbSNP
rs1431867808 1326 dbSNP
rs761759618 1329 dbSNP
rs1321780358 1332 dbSNP
rs868109822 1334 dbSNP
rs144397431 1345 dbSNP
rs1268023882 1346 dbSNP
rs573061969 1350 dbSNP
rs997995929 1353 dbSNP
rs1491134324 1360 dbSNP
rs759003673 1361 dbSNP
rs1331738715 1364 dbSNP
rs1479767916 1370 dbSNP
rs540562567 1372 dbSNP
rs759576720 1373 dbSNP
rs766924587 1375 dbSNP
rs1453275885 1376 dbSNP
rs1157053300 1378 dbSNP
rs1362472509 1382 dbSNP
rs750617248 1383 dbSNP
rs556447911 1388 dbSNP
rs1029427519 1390 dbSNP
rs767610960 1392 dbSNP
rs1362945651 1394 dbSNP
rs1343526492 1397 dbSNP
rs1021426533 1400 dbSNP
rs1408833702 1406 dbSNP
rs1022416595 1407 dbSNP
rs1406745142 1408 dbSNP
rs967678345 1410 dbSNP
rs1196163080 1411 dbSNP
rs567696505 1414 dbSNP
rs1236363611 1415 dbSNP
rs755285641 1418 dbSNP
rs1219446635 1419 dbSNP
rs1491225224 1419 dbSNP
rs1354060278 1420 dbSNP
rs764952613 1424 dbSNP
rs1264780597 1425 dbSNP
rs76135142 1427 dbSNP
rs960881089 1428 dbSNP
rs750189892 1431 dbSNP
rs529169927 1432 dbSNP
rs1193459831 1434 dbSNP
rs1229488085 1435 dbSNP
rs1294927594 1438 dbSNP
rs1327171136 1438 dbSNP
rs752385794 1441 dbSNP
rs1418874175 1444 dbSNP
rs1385176609 1448 dbSNP
rs1180178228 1452 dbSNP
rs759799653 1455 dbSNP
rs1452316685 1457 dbSNP
rs916678589 1458 dbSNP
rs780965083 1460 dbSNP
rs1030388051 1461 dbSNP
rs1162980681 1463 dbSNP
rs192058426 1466 dbSNP
rs767686274 1473 dbSNP
rs910802075 1478 dbSNP
rs1294045650 1479 dbSNP
rs1395762544 1481 dbSNP
rs1432336822 1486 dbSNP
rs1389460355 1490 dbSNP
rs764872150 1491 dbSNP
rs747724843 1494 dbSNP
rs1244818888 1495 dbSNP
rs1312232895 1496 dbSNP
rs1360982810 1497 dbSNP
rs562854634 1500 dbSNP
rs1339930680 1503 dbSNP
rs1036968626 1504 dbSNP
rs1480629485 1507 dbSNP
rs1361896884 1508 dbSNP
rs897045548 1509 dbSNP
rs1244299436 1510 dbSNP
rs1194403917 1511 dbSNP
rs533312260 1523 dbSNP
rs1181576540 1525 dbSNP
rs1331272937 1536 dbSNP
rs974070777 1537 dbSNP
rs551836143 1545 dbSNP
rs1306902807 1549 dbSNP
rs933847328 1553 dbSNP
rs1051332315 1554 dbSNP
rs1182796599 1555 dbSNP
rs889622177 1563 dbSNP
rs919393506 1569 dbSNP
rs1183634010 1570 dbSNP
rs1424264148 1570 dbSNP
rs756185996 1573 dbSNP
rs1007084779 1575 dbSNP
rs1046780676 1581 dbSNP
rs765593988 1581 dbSNP
rs530125719 1582 dbSNP
rs928396342 1586 dbSNP
rs938307165 1592 dbSNP
rs1228018529 1593 dbSNP
rs148433801 1593 dbSNP
rs1354435787 1596 dbSNP
rs1281639814 1598 dbSNP
rs1240153533 1604 dbSNP
rs1350435552 1605 dbSNP
rs1287057190 1608 dbSNP
rs1371863165 1611 dbSNP
rs778026927 1618 dbSNP
rs894157762 1627 dbSNP
rs1407261058 1631 dbSNP
rs1412284743 1633 dbSNP
rs1289496121 1636 dbSNP
rs527900634 1637 dbSNP
rs1388082484 1655 dbSNP
rs999124910 1655 dbSNP
rs754351054 1656 dbSNP
rs574373951 1660 dbSNP
rs142543694 1663 dbSNP
rs1303797308 1664 dbSNP
rs960913888 1665 dbSNP
rs1313009368 1670 dbSNP
rs1481371257 1674 dbSNP
rs992342399 1680 dbSNP
rs1204701008 1681 dbSNP
rs902988711 1685 dbSNP
rs1024262556 1689 dbSNP
rs969576007 1701 dbSNP
rs999124493 1702 dbSNP
rs567627213 1707 dbSNP
rs1328953138 1709 dbSNP
rs373896425 1710 dbSNP
rs1225902228 1711 dbSNP
rs985304221 1713 dbSNP
rs909271573 1717 dbSNP
rs1435065970 1718 dbSNP
rs183432981 1730 dbSNP
rs1319930404 1735 dbSNP
rs1246089522 1747 dbSNP
rs972024432 1751 dbSNP
rs918508344 1752 dbSNP
rs933938086 1754 dbSNP
rs1051012159 1765 dbSNP
rs1190703163 1765 dbSNP
rs890580166 1766 dbSNP
rs866327288 1767 dbSNP
rs1243888280 1775 dbSNP
rs1007508025 1776 dbSNP
rs867106982 1777 dbSNP
rs1464601536 1781 dbSNP
rs187413448 1784 dbSNP
rs565189466 1786 dbSNP
rs192558289 1788 dbSNP
rs1324910269 1789 dbSNP
rs1391529951 1811 dbSNP
rs1278600025 1823 dbSNP
rs1429790106 1831 dbSNP
rs999157479 1834 dbSNP
rs1271421646 1838 dbSNP
rs1435383906 1841 dbSNP
rs541685287 1842 dbSNP
rs896153072 1844 dbSNP
rs1014289302 1860 dbSNP
rs184848443 1864 dbSNP
rs1175323435 1866 dbSNP
rs1412683774 1867 dbSNP
rs969978026 1869 dbSNP
rs749316370 1870 dbSNP
rs982298898 1871 dbSNP
rs928363862 1884 dbSNP
rs1006359049 1886 dbSNP
rs938442957 1890 dbSNP
rs991241572 1895 dbSNP
rs1462078855 1901 dbSNP
rs147148669 1902 dbSNP
rs1208715285 1904 dbSNP
rs562650819 1905 dbSNP
rs1440005468 1909 dbSNP
rs1274501814 1910 dbSNP
rs572948164 1915 dbSNP
rs1341042731 1916 dbSNP
rs1295005723 1918 dbSNP
rs1379703831 1925 dbSNP
rs972138861 1925 dbSNP
rs1302030791 1929 dbSNP
rs1445750521 1933 dbSNP
rs1308741207 1936 dbSNP
rs1429245650 1946 dbSNP
rs947056963 1955 dbSNP
rs1042966911 1957 dbSNP
rs1372168377 1959 dbSNP
rs779357329 1963 dbSNP
rs1165782767 1964 dbSNP
rs1424604329 1965 dbSNP
rs903123227 1973 dbSNP
rs1180417973 1974 dbSNP
rs987145114 1974 dbSNP
rs934509831 1975 dbSNP
rs1344541626 1977 dbSNP
rs1229264294 1979 dbSNP
rs1205044307 1982 dbSNP
rs1051580898 1987 dbSNP
rs1224327710 1989 dbSNP
rs1449801324 1989 dbSNP
rs1043509369 1993 dbSNP
rs890295603 2000 dbSNP
rs1375228288 2006 dbSNP
rs1007558982 2008 dbSNP
rs1017661122 2016 dbSNP
rs566995234 2017 dbSNP
rs1288954819 2027 dbSNP
rs1409132270 2027 dbSNP
rs540450141 2029 dbSNP
rs559935274 2034 dbSNP
rs1225406755 2039 dbSNP
rs74442536 2040 dbSNP
rs1304975900 2042 dbSNP
rs1458612555 2042 dbSNP
rs1186321575 2045 dbSNP
rs1052127326 2048 dbSNP
rs1391664023 2052 dbSNP
rs1163143488 2053 dbSNP
rs1449647734 2053 dbSNP
rs1421298917 2055 dbSNP
rs1162141105 2056 dbSNP
rs1413118229 2058 dbSNP
rs1410898983 2059 dbSNP
rs896170435 2062 dbSNP
rs1013227823 2066 dbSNP
rs1249001135 2076 dbSNP
rs1167502000 2077 dbSNP
rs1045738786 2081 dbSNP
rs1264543255 2083 dbSNP
rs1488616845 2083 dbSNP
rs1218890063 2084 dbSNP
rs995273792 2085 dbSNP
rs1434868004 2087 dbSNP
rs1227724781 2092 dbSNP
rs1318900664 2094 dbSNP
rs1026546781 2098 dbSNP
rs555561238 2119 dbSNP
rs951071897 2120 dbSNP
rs10053 2128 dbSNP
rs1366964770 2129 dbSNP
rs573987993 2132 dbSNP
rs982266273 2144 dbSNP
rs1006396248 2146 dbSNP
rs1035149334 2153 dbSNP
rs1389911448 2154 dbSNP
rs1158812372 2155 dbSNP
rs1016478663 2157 dbSNP
rs1432031113 2158 dbSNP
rs1177397046 2162 dbSNP
rs139151651 2162 dbSNP
rs1283744910 2172 dbSNP
rs1189158868 2174 dbSNP
rs1354316867 2177 dbSNP
rs1465932235 2180 dbSNP
rs1230004476 2188 dbSNP
rs959547745 2192 dbSNP
rs558021196 2193 dbSNP
rs11414975 2194 dbSNP
rs74965198 2194 dbSNP
rs200722184 2195 dbSNP
rs71805262 2195 dbSNP
rs201870651 2196 dbSNP
rs199852499 2197 dbSNP
rs915676124 2199 dbSNP
rs151091379 2208 dbSNP
rs527628098 2214 dbSNP
rs1299266369 2219 dbSNP
rs777474105 2220 dbSNP
rs911139591 2221 dbSNP
rs924544552 2224 dbSNP
rs1320341457 2226 dbSNP
rs1186386310 2230 dbSNP
rs1235296323 2240 dbSNP
rs1408720513 2243 dbSNP
rs963958225 2245 dbSNP
rs79946763 2253 dbSNP
rs1465969200 2259 dbSNP
rs577948419 2261 dbSNP
rs1457127318 2265 dbSNP
rs545045189 2266 dbSNP
rs560227346 2267 dbSNP
rs943218565 2272 dbSNP
rs1401560555 2274 dbSNP
rs1201021381 2276 dbSNP
rs397938689 2276 dbSNP
rs57125436 2276 dbSNP
rs949080269 2287 dbSNP
rs1338814174 2294 dbSNP
rs1230650233 2299 dbSNP
rs796409720 2301 dbSNP
rs73875338 2304 dbSNP
rs1297194702 2305 dbSNP
rs904853766 2311 dbSNP
rs1226456302 2327 dbSNP
rs899268394 2334 dbSNP
rs942291446 2335 dbSNP
rs1395965195 2338 dbSNP
rs549167133 2340 dbSNP
rs994843544 2348 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 26084.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000356448.4 | 3UTR | ACCUUAGUGGGAAUUCAUUCUAUUUGCACUAAAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
67 hsa-miR-3119 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT130164 TXNIP thioredoxin interacting protein 2 4
MIRT364023 SDCBP syndecan binding protein 2 2
MIRT383920 BTG2 BTG anti-proliferation factor 2 2 2
MIRT397609 RACGAP1 Rac GTPase activating protein 1 2 2
MIRT404072 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT443202 ECHDC3 enoyl-CoA hydratase domain containing 3 2 2
MIRT446469 THUMPD3 THUMP domain containing 3 2 2
MIRT446489 PRELP proline and arginine rich end leucine rich repeat protein 2 2
MIRT446849 FIBIN fin bud initiation factor homolog (zebrafish) 2 2
MIRT463282 ZFX zinc finger protein, X-linked 2 4
MIRT478441 DAZAP2 DAZ associated protein 2 2 2
MIRT480447 C16orf72 chromosome 16 open reading frame 72 2 2
MIRT480632 BTBD3 BTB domain containing 3 2 6
MIRT487460 ANKRD42 ankyrin repeat domain 42 2 2
MIRT487497 IL1F10 interleukin 1 family member 10 2 4
MIRT491967 USP37 ubiquitin specific peptidase 37 2 2
MIRT495620 PPP1R1C protein phosphatase 1 regulatory inhibitor subunit 1C 2 2
MIRT496151 RPS15A ribosomal protein S15a 2 2
MIRT498042 SNX5 sorting nexin 5 2 6
MIRT500546 XBP1P1 X-box binding protein 1 pseudogene 1 2 8
MIRT503902 ZSCAN25 zinc finger and SCAN domain containing 25 2 2
MIRT513157 BIRC5 baculoviral IAP repeat containing 5 2 6
MIRT519070 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT519741 ZNF394 zinc finger protein 394 2 4
MIRT522733 LRP8 LDL receptor related protein 8 2 4
MIRT539402 ADIPOR2 adiponectin receptor 2 2 2
MIRT551660 KIAA1143 KIAA1143 2 4
MIRT559131 BTG3 BTG anti-proliferation factor 3 2 4
MIRT559307 ATXN1 ataxin 1 2 2
MIRT559515 ARHGEF26 Rho guanine nucleotide exchange factor 26 2 2
MIRT560771 RRP7A ribosomal RNA processing 7 homolog A 2 2
MIRT562210 HMGB2 high mobility group box 2 2 2
MIRT562734 ZNF468 zinc finger protein 468 2 2
MIRT563070 EMC8 ER membrane protein complex subunit 8 2 2
MIRT563731 ZNF107 zinc finger protein 107 2 4
MIRT576719 Wars tryptophanyl-tRNA synthetase 2 2
MIRT612872 IGFBP5 insulin like growth factor binding protein 5 2 4
MIRT613214 CCDC85C coiled-coil domain containing 85C 2 4
MIRT613591 THSD7A thrombospondin type 1 domain containing 7A 2 2
MIRT614332 NANOS1 nanos C2HC-type zinc finger 1 2 4
MIRT614929 MARCH3 membrane associated ring-CH-type finger 3 2 2
MIRT616257 KANK4 KN motif and ankyrin repeat domains 4 2 2
MIRT617087 FPR1 formyl peptide receptor 1 2 2
MIRT617167 SLC16A5 solute carrier family 16 member 5 2 2
MIRT620350 WDR75 WD repeat domain 75 2 2
MIRT621041 SOX30 SRY-box 30 2 2
MIRT625936 SCYL3 SCY1 like pseudokinase 3 2 2
MIRT636872 BCORL1 BCL6 corepressor like 1 2 2
MIRT637019 CLASP1 cytoplasmic linker associated protein 1 2 2
MIRT637299 ACTN2 actinin alpha 2 2 2
MIRT639734 MAP2K2 mitogen-activated protein kinase kinase 2 2 2
MIRT640811 ZMAT1 zinc finger matrin-type 1 2 2
MIRT642879 SAMD1 sterile alpha motif domain containing 1 2 2
MIRT648116 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT655769 NPTX1 neuronal pentraxin 1 2 2
MIRT655801 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT659142 DDR2 discoidin domain receptor tyrosine kinase 2 2 2
MIRT660327 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT662150 IPO11 importin 11 2 2
MIRT664741 METTL16 methyltransferase like 16 2 2
MIRT670134 HOXD12 homeobox D12 2 2
MIRT679027 ZNF419 zinc finger protein 419 2 2
MIRT695596 TMEM199 transmembrane protein 199 2 2
MIRT703345 GATAD2B GATA zinc finger domain containing 2B 2 2
MIRT704097 DST dystonin 2 2
MIRT711833 AMOTL2 angiomotin like 2 2 2
MIRT715820 ZNF598 zinc finger protein 598 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3119 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-3119 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3119 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-3119 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

Error report submission