miRTarBase - #MIRT560276


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pre-miRNA Information
pre-miRNA hsa-mir-3133   
Genomic Coordinates chr2: 241477905 - 241477982
Description Homo sapiens miR-3133 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3133
Sequence 10| UAAAGAACUCUUAAAACCCAAU |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1030052469 1 dbSNP
rs955010137 12 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SF1   
Synonyms BBP, D11S636, MBBP, ZCCHC25, ZFM1, ZNF162
Description splicing factor 1
Transcript NM_001178031   
Other Transcripts NM_001178030 , NM_004630 , NM_201995 , NM_201997 , NM_201998   
Expression
Putative miRNA Targets on SF1
3'UTR of SF1
(miRNA target sites are highlighted)		 
>SF1|NM_001178031|3'UTR
   1 ACTTGTTTTTTAAGAAAATATATATTATATATAGAGAGAATTGGTCTCGTTTAAACACGCCGAACCTCACCATATGGAGC
  81 CAGACATTGGGACGCACGCATGTGATTGTGTGTGCACGCATGTGTGTGTGTGCACGCACTGGGCTGGGCCAAGCGACTGA
 161 GGATTCGCTTGGGAACGGGCAGGTGGTAGTAGGGGCGCCAGCTTGGGCTCTCCTGGCGCCCCGTAGCATCGAGTGTCTTC
 241 TTTGTCTTCTTTCTCTCCTCACCCAACTCCCTTTGCCTCTCCCCAAACCGGGCCGCCAGGATCCCTCCCCGCGGCGGCGA
 321 TGGCCCGAGCCATGAGAGTGAGGACTTTCCGCGCCCATTGGTGACCCTTCCAGGCAGACAGCCTCAGCAACGCCCCTGGT
 401 GGACAGGATGGTTCGGCAAAGCAGCCTGAGTTATTTTTGTGGACGGAATCGGAACACGCTGGCTCCATATCGTGAAATTT
 481 TTATTAATTTTTTTCTTTTTCCTTTGTTACTTCTTTATCTTTTCCTTTCTTCAGACTCCGTCCAAGGAGATGCTCTCCCC
 561 GGTCTTCTGCTGCAATTTAGATTCCTTTCCCTTCTCTCCAGTTCTCCTTCCCTTACCAAGGAGAGGGGAGCAAATGGTTT
 641 TGGGCAAGGGCTTTGGCCATTCATGTCAAGCTGGTTGTGGGTTTTTCAAGGTGCCATAGCCACCCCCAAAGATGTTTGTT
 721 TAAAGCGTGGGGTTTTTTAATCTCTGCCACCCTTGTCAAGGGAGTCTTGTAAAGTTGCCGAGGGTAGGTTCATCTCCAGG
 801 TTTCGGGATTCCCATCCGTCCTGGCGATCCTGCCAGCAGTGGGTGGGCAGCCTGAGCTCCCTCGGGCTCGCCTGCCAGCC
 881 TGGAGTTCTTCCTGTGCTCCTTGATCACCTGAGCTGCCTCAGATTCCATTTGGTCCTCTCCTTCCTGGAAGGCTTCCTTT
 961 TATGTTTTGTTTTAATCCCAAATGTCTGAATGTTTTGCAGTGTGTAGGGGTTTGAGCCCCTTGTTCATTCTCCTTCCTTT
1041 TTCCTCCCGCTTCCCTCTCCATGAAGTGATTCTGTTGACAATAATGTATACTGCGCGTTCTCTTCACTGGTTTATCTGCA
1121 GAAATTTCTCTGGGCTTTTTTCGGTGTTAGATTCAACACTGCGCTAAAGCGGGGATGTTCCATTGAATAAAAGAGCAGTG
1201 TGGTTTTCTGGGTC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uaaccCAAAAUU-----CUCAAGAAAu 5'
               |||| ||     |:|||:||| 
Target 5' tgtttGTTTAAAGCGTGGGGTTTTTTa 3'
 713 - 739 141.00 -8.30
2 
miRNA  3' uaacccaaaauUCUCAAGAAau 5'
                     :||||||||  
Target 5' cctgccagcctGGAGTTCTTcc 3'
 871 - 892 131.00 -8.60
3 
miRNA  3' uaaCCCAAAAUUC-----UCAAGAAAu 5'
             ||| |||:||      |||| || 
Target 5' gtaGGGGTTTGAGCCCCTTGTTCATTc 3'
 1004 - 1030 127.00 -9.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN510618 121 COSMIC
COSN26994422 176 COSMIC
COSN30526257 210 COSMIC
COSN26994423 215 COSMIC
COSN30710873 217 COSMIC
COSN26994421 222 COSMIC
COSN1080363 233 COSMIC
COSN30150158 249 COSMIC
COSN30488456 270 COSMIC
COSN26994424 272 COSMIC
COSN30540730 283 COSMIC
COSM5373225 304 COSMIC
COSM8027272 309 COSMIC
COSM2164247 310 COSMIC
COSM2164246 312 COSMIC
COSM7508661 313 COSMIC
COSM8260728 315 COSMIC
COSM1355765 316 COSMIC
COSM9633126 326 COSMIC
COSM7414851 329 COSMIC
COSM6776203 333 COSMIC
COSM7195397 349 COSMIC
COSM3687490 351 COSMIC
COSM1664119 353 COSMIC
COSM6776206 356 COSMIC
COSM8730837 374 COSMIC
COSM5982306 390 COSMIC
COSM8464967 392 COSMIC
COSM1265370 394 COSMIC
COSM8606212 394 COSMIC
COSM7297401 408 COSMIC
COSM9706236 414 COSMIC
COSM5558216 418 COSMIC
COSN24981926 451 COSMIC
COSN13339692 458 COSMIC
COSN30118643 462 COSMIC
COSN30513142 478 COSMIC
COSN1136179 487 COSMIC
COSN31498122 487 COSMIC
COSN30466937 555 COSMIC
COSN31602240 580 COSMIC
COSN22025904 780 COSMIC
COSN1540711 994 COSMIC
COSN21703125 1094 COSMIC
COSN30541659 1096 COSMIC
COSN31593401 1169 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs767609912 1 dbSNP
rs761852518 2 dbSNP
rs2277309 4 dbSNP
rs1294574881 5 dbSNP
rs1014976282 7 dbSNP
rs1294983569 8 dbSNP
rs566910333 12 dbSNP
rs1349103927 14 dbSNP
rs899960802 19 dbSNP
rs1385811185 20 dbSNP
rs551424799 21 dbSNP
rs768768036 24 dbSNP
rs1227128880 25 dbSNP
rs1288240903 25 dbSNP
rs1322452401 26 dbSNP
rs555531141 26 dbSNP
rs951829256 26 dbSNP
rs1416795755 28 dbSNP
rs1488279602 29 dbSNP
rs762682736 30 dbSNP
rs547284311 31 dbSNP
rs71581801 32 dbSNP
rs141656640 33 dbSNP
rs1159866129 34 dbSNP
rs1474591371 36 dbSNP
rs769681681 38 dbSNP
rs756568544 40 dbSNP
rs918888098 40 dbSNP
rs1483333970 41 dbSNP
rs745775450 44 dbSNP
rs1166300315 46 dbSNP
rs1215491090 48 dbSNP
rs746697632 49 dbSNP
rs941753762 58 dbSNP
rs895089737 59 dbSNP
rs1372842095 60 dbSNP
rs1408368936 61 dbSNP
rs571463074 62 dbSNP
rs1380521407 63 dbSNP
rs1035098703 65 dbSNP
rs1465451898 72 dbSNP
rs1321144856 77 dbSNP
rs1229451390 80 dbSNP
rs1276999222 86 dbSNP
rs1344120841 87 dbSNP
rs915684900 87 dbSNP
rs551726742 89 dbSNP
rs181459959 93 dbSNP
rs1042093367 94 dbSNP
rs1349635860 95 dbSNP
rs562491698 97 dbSNP
rs868655405 100 dbSNP
rs1253505849 102 dbSNP
rs977701611 107 dbSNP
rs1188865389 115 dbSNP
rs746131958 115 dbSNP
rs893277638 118 dbSNP
rs967305079 120 dbSNP
rs1054659586 122 dbSNP
rs988913920 125 dbSNP
rs1021573865 130 dbSNP
rs1235206098 131 dbSNP
rs139398403 133 dbSNP
rs1168300948 139 dbSNP
rs11828071 139 dbSNP
rs1302666919 139 dbSNP
rs1300181526 140 dbSNP
rs1434864817 146 dbSNP
rs922248034 154 dbSNP
rs556772968 155 dbSNP
rs1312517629 157 dbSNP
rs964079349 164 dbSNP
rs944654782 166 dbSNP
rs71581780 167 dbSNP
rs907888306 173 dbSNP
rs1318063040 176 dbSNP
rs1188631838 177 dbSNP
rs369296702 178 dbSNP
rs1249271011 183 dbSNP
rs748567372 188 dbSNP
rs779041586 193 dbSNP
rs1426348811 195 dbSNP
rs1047231153 196 dbSNP
rs189469352 201 dbSNP
rs1027885733 208 dbSNP
rs1359092300 213 dbSNP
rs1458167561 217 dbSNP
rs866909330 218 dbSNP
rs772674153 222 dbSNP
rs1037360946 223 dbSNP
rs1386483195 223 dbSNP
rs941651221 225 dbSNP
rs915590716 230 dbSNP
rs1368104591 233 dbSNP
rs1376424226 236 dbSNP
rs1173565486 237 dbSNP
rs528989313 238 dbSNP
rs1209213413 243 dbSNP
rs1322733911 243 dbSNP
rs1250016581 247 dbSNP
rs750910764 252 dbSNP
rs1461350973 253 dbSNP
rs768056986 253 dbSNP
rs770462618 253 dbSNP
rs1229612577 254 dbSNP
rs762449011 257 dbSNP
rs1418725973 258 dbSNP
rs200167283 263 dbSNP
rs777425608 264 dbSNP
rs758146617 270 dbSNP
rs754213839 271 dbSNP
rs780534412 272 dbSNP
rs756593703 276 dbSNP
rs375624336 277 dbSNP
rs767972657 279 dbSNP
rs1392208731 281 dbSNP
rs1166415934 283 dbSNP
rs753941520 284 dbSNP
rs1003429760 285 dbSNP
rs748500343 288 dbSNP
rs372388097 289 dbSNP
rs775075287 290 dbSNP
rs1010598984 293 dbSNP
rs200580424 294 dbSNP
rs775731187 295 dbSNP
rs1271855646 296 dbSNP
rs769556931 297 dbSNP
rs1322445214 301 dbSNP
rs759384487 302 dbSNP
rs1244736994 304 dbSNP
rs776627122 305 dbSNP
rs770785471 307 dbSNP
rs1291581033 309 dbSNP
rs376621306 310 dbSNP
rs771746896 311 dbSNP
rs1290101748 312 dbSNP
rs747776685 313 dbSNP
rs778764471 315 dbSNP
rs371350442 316 dbSNP
rs746220764 318 dbSNP
rs367830941 319 dbSNP
rs1431186265 323 dbSNP
rs1390443056 324 dbSNP
rs757732088 325 dbSNP
rs1268668260 327 dbSNP
rs1483570310 328 dbSNP
rs370538328 329 dbSNP
rs1251640891 331 dbSNP
rs751621587 332 dbSNP
rs764131124 334 dbSNP
rs758524634 338 dbSNP
rs201322993 339 dbSNP
rs71581800 343 dbSNP
rs150183301 346 dbSNP
rs367962771 348 dbSNP
rs1233255362 349 dbSNP
rs766299778 350 dbSNP
rs756299065 351 dbSNP
rs771691894 352 dbSNP
rs747723285 353 dbSNP
rs1295909078 358 dbSNP
rs764725036 364 dbSNP
rs1441318687 365 dbSNP
rs774076314 366 dbSNP
rs1172665724 370 dbSNP
rs759262547 372 dbSNP
rs768439817 372 dbSNP
rs746199390 374 dbSNP
rs1440564003 376 dbSNP
rs781443768 378 dbSNP
rs757683654 379 dbSNP
rs1250475574 381 dbSNP
rs747451732 382 dbSNP
rs1226298556 383 dbSNP
rs138240356 390 dbSNP
rs1252807884 391 dbSNP
rs539758407 392 dbSNP
rs765393387 393 dbSNP
rs755185697 396 dbSNP
rs927821124 397 dbSNP
rs1316223447 400 dbSNP
rs1304853299 401 dbSNP
rs1229661283 412 dbSNP
rs374326924 414 dbSNP
rs1311879738 415 dbSNP
rs1363297878 417 dbSNP
rs1412474298 419 dbSNP
rs1239314610 421 dbSNP
rs201033322 425 dbSNP
rs760572656 426 dbSNP
rs906979755 427 dbSNP
rs1391003936 432 dbSNP
rs376959592 434 dbSNP
rs767562529 439 dbSNP
rs761345970 441 dbSNP
rs374307255 444 dbSNP
rs768319569 445 dbSNP
rs1409336670 446 dbSNP
rs1423272784 447 dbSNP
rs199672583 450 dbSNP
rs775265627 451 dbSNP
rs771188004 454 dbSNP
rs747475240 457 dbSNP
rs200652540 458 dbSNP
rs942637000 459 dbSNP
rs1210575291 460 dbSNP
rs1314016689 465 dbSNP
rs778930729 467 dbSNP
rs199684468 469 dbSNP
rs780386481 471 dbSNP
rs755794458 472 dbSNP
rs1313049258 473 dbSNP
rs1339093093 477 dbSNP
rs1354473156 484 dbSNP
rs955631763 485 dbSNP
rs1025753242 487 dbSNP
rs1059419 495 dbSNP
rs957944318 501 dbSNP
rs71581779 510 dbSNP
rs1371169798 512 dbSNP
rs762740207 513 dbSNP
rs1173150020 514 dbSNP
rs1404264356 516 dbSNP
rs542164137 516 dbSNP
rs1028037700 517 dbSNP
rs1335517043 517 dbSNP
rs1436866548 517 dbSNP
rs1292956683 519 dbSNP
rs771344148 522 dbSNP
rs1326257765 523 dbSNP
rs1234403911 524 dbSNP
rs574233762 524 dbSNP
rs1372947075 525 dbSNP
rs1327445882 529 dbSNP
rs1017115459 538 dbSNP
rs573143119 539 dbSNP
rs1040587056 540 dbSNP
rs1012500467 543 dbSNP
rs1009138003 553 dbSNP
rs895432684 557 dbSNP
rs1446281723 559 dbSNP
rs1034417011 560 dbSNP
rs1165176952 561 dbSNP
rs1175564094 567 dbSNP
rs930629361 569 dbSNP
rs920607323 573 dbSNP
rs1286814447 575 dbSNP
rs115615897 584 dbSNP
rs1182614132 589 dbSNP
rs557674776 589 dbSNP
rs1473488468 590 dbSNP
rs938118163 591 dbSNP
rs1249443767 592 dbSNP
rs150374586 595 dbSNP
rs1236971993 596 dbSNP
rs1211804898 598 dbSNP
rs1260153645 598 dbSNP
rs927789903 599 dbSNP
rs1203748276 601 dbSNP
rs1489786082 604 dbSNP
rs1451638694 606 dbSNP
rs1252436138 609 dbSNP
rs571201608 611 dbSNP
rs1207603584 618 dbSNP
rs1156322132 626 dbSNP
rs1041420745 635 dbSNP
rs752518256 650 dbSNP
rs1164607796 651 dbSNP
rs1364150482 657 dbSNP
rs1404705409 662 dbSNP
rs892933074 663 dbSNP
rs966597038 669 dbSNP
rs1390107079 670 dbSNP
rs1306408006 688 dbSNP
rs989812195 689 dbSNP
rs962126847 694 dbSNP
rs1054257982 701 dbSNP
rs1289838106 703 dbSNP
rs1357088456 709 dbSNP
rs523200 711 dbSNP
rs1278246779 718 dbSNP
rs538141388 724 dbSNP
rs113718560 727 dbSNP
rs759455274 728 dbSNP
rs1275001797 731 dbSNP
rs911172616 732 dbSNP
rs1051519680 738 dbSNP
rs933975353 739 dbSNP
rs918596903 744 dbSNP
rs1382997584 746 dbSNP
rs1325579939 751 dbSNP
rs972771557 752 dbSNP
rs996588437 754 dbSNP
rs879764473 760 dbSNP
rs965152397 765 dbSNP
rs1019112460 769 dbSNP
rs569093199 771 dbSNP
rs1160186170 774 dbSNP
rs1009107283 777 dbSNP
rs962825038 779 dbSNP
rs1804549 780 dbSNP
rs548998288 783 dbSNP
rs1202412652 785 dbSNP
rs770612410 788 dbSNP
rs760358105 794 dbSNP
rs959871172 795 dbSNP
rs1478303653 796 dbSNP
rs557389792 797 dbSNP
rs745515407 804 dbSNP
rs534700747 805 dbSNP
rs1191202874 807 dbSNP
rs971054068 810 dbSNP
rs1268311331 812 dbSNP
rs1210239702 813 dbSNP
rs1019912195 817 dbSNP
rs1331616367 818 dbSNP
rs1282555338 825 dbSNP
rs1467970822 826 dbSNP
rs1334808334 831 dbSNP
rs1405379836 841 dbSNP
rs899148279 851 dbSNP
rs1322782997 857 dbSNP
rs1363882423 859 dbSNP
rs11547307 860 dbSNP
rs1803954 861 dbSNP
rs534434719 863 dbSNP
rs1312712814 864 dbSNP
rs938103109 867 dbSNP
rs565828049 869 dbSNP
rs892923279 870 dbSNP
rs549105325 876 dbSNP
rs1243479413 877 dbSNP
rs1485137547 880 dbSNP
rs1321407664 888 dbSNP
rs913750885 891 dbSNP
rs1481719252 892 dbSNP
rs1437510323 893 dbSNP
rs989387978 899 dbSNP
rs1006750674 906 dbSNP
rs1343704532 907 dbSNP
rs1161733812 909 dbSNP
rs889639182 920 dbSNP
rs1430204805 931 dbSNP
rs1050988666 938 dbSNP
rs1158087798 944 dbSNP
rs1367988179 947 dbSNP
rs1414894212 949 dbSNP
rs1427101922 953 dbSNP
rs3168088 962 dbSNP
rs933902198 964 dbSNP
rs1059505 969 dbSNP
rs1228471509 972 dbSNP
rs1285670019 975 dbSNP
rs779203716 977 dbSNP
rs975517046 978 dbSNP
rs918587017 982 dbSNP
rs1247688873 992 dbSNP
rs1197960344 994 dbSNP
rs1490934127 994 dbSNP
rs1453219773 995 dbSNP
rs1248144082 1002 dbSNP
rs1268792608 1009 dbSNP
rs1473166100 1010 dbSNP
rs1189982841 1014 dbSNP
rs71581799 1015 dbSNP
rs7945177 1018 dbSNP
rs1165708869 1022 dbSNP
rs909991042 1023 dbSNP
rs1301294584 1032 dbSNP
rs991330170 1033 dbSNP
rs959538724 1034 dbSNP
rs1344810869 1037 dbSNP
rs928131043 1048 dbSNP
rs564360601 1049 dbSNP
rs1370489347 1050 dbSNP
rs780057527 1051 dbSNP
rs866306441 1053 dbSNP
rs1220723830 1054 dbSNP
rs1291423360 1055 dbSNP
rs1483679240 1056 dbSNP
rs1281272548 1057 dbSNP
rs950838481 1059 dbSNP
rs1469669065 1060 dbSNP
rs1026923900 1063 dbSNP
rs1182724820 1068 dbSNP
rs995087988 1072 dbSNP
rs1442939725 1077 dbSNP
rs756215365 1080 dbSNP
rs544350478 1081 dbSNP
rs754175413 1085 dbSNP
rs1330774670 1086 dbSNP
rs1352313705 1086 dbSNP
rs185304489 1089 dbSNP
rs1284205769 1090 dbSNP
rs368103208 1094 dbSNP
rs1007057102 1095 dbSNP
rs569769120 1096 dbSNP
rs1448413357 1097 dbSNP
rs1437387468 1101 dbSNP
rs1210922731 1103 dbSNP
rs749450159 1105 dbSNP
rs555053762 1126 dbSNP
rs945480912 1127 dbSNP
rs1460171732 1130 dbSNP
rs1360709723 1135 dbSNP
rs889586079 1142 dbSNP
rs892280132 1143 dbSNP
rs1051406607 1148 dbSNP
rs1417302154 1149 dbSNP
rs1390760786 1150 dbSNP
rs1409241128 1150 dbSNP
rs542155651 1151 dbSNP
rs1426284493 1152 dbSNP
rs1407598528 1153 dbSNP
rs998104250 1154 dbSNP
rs1418265802 1155 dbSNP
rs573217598 1162 dbSNP
rs1327444809 1170 dbSNP
rs897102626 1171 dbSNP
rs1268721954 1177 dbSNP
rs936592151 1180 dbSNP
rs1220271140 1182 dbSNP
rs921217036 1193 dbSNP
rs975357385 1194 dbSNP
rs1203329076 1195 dbSNP
rs751124673 1198 dbSNP
rs553076508 1199 dbSNP
rs1195076505 1208 dbSNP
rs375330650 1210 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000377390.3 | 3UTR | UUACUUCUUUAUCUUUUCCUUUCUUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
174 hsa-miR-3133 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057804 SLC30A7 solute carrier family 30 member 7 2 2
MIRT075401 ZFHX3 zinc finger homeobox 3 2 2
MIRT088350 MAPRE3 microtubule associated protein RP/EB family member 3 2 6
MIRT107288 FAM73B mitoguardin 2 2 2
MIRT141571 ABHD2 abhydrolase domain containing 2 2 2
MIRT161036 CDV3 CDV3 homolog 2 2
MIRT167732 RNF146 ring finger protein 146 8 3
MIRT209559 PAK2 p21 (RAC1) activated kinase 2 2 2
MIRT214631 SMAD5 SMAD family member 5 2 8
MIRT258393 KIAA0895 KIAA0895 2 2
MIRT272744 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT309347 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 6
MIRT329705 SCD stearoyl-CoA desaturase 2 2
MIRT336556 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT363351 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT386753 TAOK1 TAO kinase 1 2 2
MIRT441580 EXOC5 exocyst complex component 5 2 2
MIRT441735 SEPT8 septin 8 2 2
MIRT441817 LRRC40 leucine rich repeat containing 40 2 2
MIRT442180 TRIM59 tripartite motif containing 59 2 4
MIRT442277 TLX3 T-cell leukemia homeobox 3 2 2
MIRT442489 TBC1D19 TBC1 domain family member 19 2 2
MIRT443242 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443270 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT444114 CEPT1 choline/ethanolamine phosphotransferase 1 2 2
MIRT444725 LAMA2 laminin subunit alpha 2 2 2
MIRT445346 FAM169A family with sequence similarity 169 member A 2 2
MIRT445693 GJB1 gap junction protein beta 1 2 2
MIRT446051 CDC73 cell division cycle 73 2 2
MIRT447746 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT447955 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT449199 ZNF623 zinc finger protein 623 2 2
MIRT449564 GPC5 glypican 5 2 2
MIRT450938 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT459811 POTED POTE ankyrin domain family member D 2 8
MIRT461692 ZNF426 zinc finger protein 426 2 2
MIRT462014 SNRNP27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 2 2
MIRT465150 TSC22D2 TSC22 domain family member 2 2 2
MIRT467144 SREK1IP1 SREK1 interacting protein 1 2 2
MIRT474929 KCTD15 potassium channel tetramerization domain containing 15 2 8
MIRT475118 IPPK inositol-pentakisphosphate 2-kinase 2 2
MIRT476844 FIGN fidgetin, microtubule severing factor 2 10
MIRT477336 EPHA2 EPH receptor A2 2 2
MIRT477853 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 2 2
MIRT481113 B2M beta-2-microglobulin 2 2
MIRT481296 ATP6V1B2 ATPase H+ transporting V1 subunit B2 2 10
MIRT485094 SLC30A1 solute carrier family 30 member 1 2 4
MIRT491908 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 2
MIRT492458 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 8
MIRT493341 LAPTM4A lysosomal protein transmembrane 4 alpha 2 12
MIRT494771 AP1G1 adaptor related protein complex 1 gamma 1 subunit 2 2
MIRT497837 GPR26 G protein-coupled receptor 26 2 2
MIRT497958 DGAT2 diacylglycerol O-acyltransferase 2 2 2
MIRT498445 INO80D INO80 complex subunit D 2 2
MIRT498997 HAT1 histone acetyltransferase 1 2 10
MIRT499257 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT500067 SFT2D2 SFT2 domain containing 2 2 4
MIRT501385 RBFOX2 RNA binding protein, fox-1 homolog 2 2 10
MIRT503084 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503272 SLC7A5 solute carrier family 7 member 5 2 2
MIRT504341 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT505453 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 6
MIRT505905 RIMS3 regulating synaptic membrane exocytosis 3 2 6
MIRT507917 C7orf60 base methyltransferase of 25S rRNA 2 homolog 2 6
MIRT508174 FRK fyn related Src family tyrosine kinase 2 4
MIRT508287 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT509232 KIF14 kinesin family member 14 2 6
MIRT509481 GNL3L G protein nucleolar 3 like 2 6
MIRT509530 INTU inturned planar cell polarity protein 2 6
MIRT509548 BTLA B and T lymphocyte associated 2 8
MIRT511328 KIAA1522 KIAA1522 2 4
MIRT511427 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 4
MIRT511477 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 4
MIRT512471 CCDC149 coiled-coil domain containing 149 2 2
MIRT512996 SEZ6L seizure related 6 homolog like 2 2
MIRT514755 ACER3 alkaline ceramidase 3 2 8
MIRT515764 KRTAP5-6 keratin associated protein 5-6 2 2
MIRT517392 TBK1 TANK binding kinase 1 2 4
MIRT518720 FTH1 ferritin heavy chain 1 2 2
MIRT521923 PHIP pleckstrin homology domain interacting protein 2 4
MIRT522849 KIAA2022 neurite extension and migration factor 2 4
MIRT522887 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT523153 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT525149 ZNF256 zinc finger protein 256 2 2
MIRT525941 C11orf74 chromosome 11 open reading frame 74 2 2
MIRT526876 ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit 2 2
MIRT527366 KRTAP13-2 keratin associated protein 13-2 2 2
MIRT527549 DLGAP5 DLG associated protein 5 2 4
MIRT527604 ANKRD42 ankyrin repeat domain 42 2 2
MIRT527803 KLRD1 killer cell lectin like receptor D1 2 2
MIRT528046 PRKD3 protein kinase D3 2 2
MIRT528397 PGK1 phosphoglycerate kinase 1 2 2
MIRT529673 SLC28A1 solute carrier family 28 member 1 2 2
MIRT530358 HPSE heparanase 2 2
MIRT530908 KIAA1161 myogenesis regulating glycosidase (putative) 2 2
MIRT531169 ZNF333 zinc finger protein 333 2 2
MIRT531438 PAK1 p21 (RAC1) activated kinase 1 2 2
MIRT531562 CENPC1P1 centromere protein C pseudogene 1 1 1
MIRT532783 LDHD lactate dehydrogenase D 2 2
MIRT532848 ZNF699 zinc finger protein 699 2 2
MIRT534287 SLC12A7 solute carrier family 12 member 7 2 2
MIRT535078 PPIG peptidylprolyl isomerase G 2 4
MIRT535968 MFAP3L microfibril associated protein 3 like 2 2
MIRT536163 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT537417 FBXO47 F-box protein 47 2 2
MIRT538665 CCSAP centriole, cilia and spindle associated protein 2 2
MIRT540291 RGR retinal G protein coupled receptor 2 4
MIRT543332 KIAA1456 KIAA1456 2 2
MIRT543392 CC2D2A coiled-coil and C2 domain containing 2A 2 2
MIRT543891 AIMP1 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 2 2
MIRT545609 SIGLEC9 sialic acid binding Ig like lectin 9 2 2
MIRT545839 ZNF275 zinc finger protein 275 2 2
MIRT546689 RORA RAR related orphan receptor A 2 4
MIRT547513 MAT2A methionine adenosyltransferase 2A 2 4
MIRT549431 ACVR1 activin A receptor type 1 2 2
MIRT550567 MYC MYC proto-oncogene, bHLH transcription factor 2 4
MIRT552517 ZIC5 Zic family member 5 2 2
MIRT552743 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT552942 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 2 2
MIRT555752 PDCD10 programmed cell death 10 2 2
MIRT558002 FAM160B1 family with sequence similarity 160 member B1 2 2
MIRT559422 ASF1B anti-silencing function 1B histone chaperone 2 2
MIRT560276 SF1 splicing factor 1 2 2
MIRT560713 ZNF324B zinc finger protein 324B 2 2
MIRT561190 TNFRSF10A TNF receptor superfamily member 10a 2 2
MIRT561817 NUP50 nucleoporin 50 2 2
MIRT562018 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT562847 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT563252 SETD6 SET domain containing 6 2 2
MIRT563978 GCC2 GRIP and coiled-coil domain containing 2 2 2
MIRT564383 BAAT bile acid-CoA:amino acid N-acyltransferase 2 2
MIRT566552 PANK3 pantothenate kinase 3 2 2
MIRT566933 LIN28B lin-28 homolog B 2 2
MIRT566989 LBR lamin B receptor 2 2
MIRT567645 EXT1 exostosin glycosyltransferase 1 2 2
MIRT568268 BICD2 BICD cargo adaptor 2 2 2
MIRT571407 MED4 mediator complex subunit 4 2 2
MIRT571784 PPP2CA protein phosphatase 2 catalytic subunit alpha 2 2
MIRT572437 ATM ATM serine/threonine kinase 2 2
MIRT573613 COX6A1P2 cytochrome c oxidase subunit 6A1 pseudogene 2 2 2
MIRT574289 COX6A1 cytochrome c oxidase subunit 6A1 2 2
MIRT574375 YY1 YY1 transcription factor 2 2
MIRT613142 DSEL dermatan sulfate epimerase-like 2 2
MIRT616661 ORAI1 ORAI calcium release-activated calcium modulator 1 2 2
MIRT619345 SASH1 SAM and SH3 domain containing 1 2 2
MIRT626315 ABCC9 ATP binding cassette subfamily C member 9 2 2
MIRT628235 FAM117B family with sequence similarity 117 member B 2 2
MIRT630452 GTPBP8 GTP binding protein 8 (putative) 2 2
MIRT631013 TMEM30B transmembrane protein 30B 2 2
MIRT637315 FBXO18 F-box protein, helicase, 18 2 2
MIRT640658 FRY FRY microtubule binding protein 2 2
MIRT642081 FUT11 fucosyltransferase 11 2 2
MIRT644607 C17orf77 chromosome 17 open reading frame 77 2 2
MIRT644829 DNAJC21 DnaJ heat shock protein family (Hsp40) member C21 2 2
MIRT652465 TMEM2 transmembrane protein 2 2 2
MIRT657514 HAS2 hyaluronan synthase 2 2 2
MIRT658290 FAM86C1 family with sequence similarity 86 member C1 2 2
MIRT659570 CGGBP1 CGG triplet repeat binding protein 1 2 2
MIRT675457 SRP19 signal recognition particle 19 2 2
MIRT687828 ITGB8 integrin subunit beta 8 2 2
MIRT693550 MYO16 myosin XVI 2 2
MIRT697294 ZNF654 zinc finger protein 654 2 2
MIRT699804 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT704867 CD164 CD164 molecule 2 2
MIRT705309 AVL9 AVL9 cell migration associated 2 2
MIRT705323 ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 2 2
MIRT707180 HOXC4 homeobox C4 2 2
MIRT709331 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT712321 PER2 period circadian clock 2 2 2
MIRT713817 XRCC2 X-ray repair cross complementing 2 2 2
MIRT713854 HHLA2 HERV-H LTR-associating 2 2 2
MIRT717257 SLC44A1 solute carrier family 44 member 1 2 2
MIRT719956 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT725408 KIF6 kinesin family member 6 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3133 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3133 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-mir-3133 Androstenedione+Anastrozole sensitive cell line (MCF-7)
hsa-mir-3133 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3133 Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3133 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3133 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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