miRTarBase - #MIRT560816


—
pre-miRNA Information
pre-miRNA hsa-mir-6818   
Genomic Coordinates chr22: 30007049 - 30007113
Description Homo sapiens miR-6818 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6818-3p
Sequence 44| UUGUCUCUUGUUCCUCACACAG |65
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1325627700 2 dbSNP
rs750902684 3 dbSNP
rs756542190 6 dbSNP
rs1365035732 17 dbSNP
Putative Targets

Gene Information
Gene Symbol DIP2A   
Synonyms C21orf106, DIP2
Description disco interacting protein 2 homolog A
Transcript NM_001146116   
Other Transcripts NM_001146115 , NM_015151 , NM_206889 , NM_206890 , NM_206891   
Expression
Putative miRNA Targets on DIP2A
3'UTR of DIP2A
(miRNA target sites are highlighted)		 
>DIP2A|NM_001146116|3'UTR
   1 GCGCAGCACACCGGCCCAGGTGCCGGAGATGAATGAGCCCCAGCAGTCCAAGGTGTGATGTGGGAAGACACCGCAGAGCT
  81 CACTCACCGGGACTCGCCCTTCCTGTGCTCTTACAGATCCCTCTCAACAATCCCCGCATCTCCTTTTAGAAAGCACTTCC
 161 TGAATTATTTAAAGAAATATTTTGAATCTGCCAAGTACATTTACAAAAACACGGATGCTGGTATTTTAACAGATGGAGAG
 241 ACAAGGAAAGGAAAGGAAAGGCCTGGCATGGGCATTGTGAGGAATCACAGGCACCGAGGTTGTTCTCTGCTGTACTGCAA
 321 GTTTGCACTTTCTTTAGGCTAAAAATATAGTTCCTGATTTTTAAAATTCAGTTATTTATTCCCACTTCAAATGACAAGTT
 401 CATATATAGAATTTACGGGAGAAACTTGAGACCATTTACGGGGAGAAACTTGATTCTGGGAAGATAGCAGAGTACAAACC
 481 AGCTGCCTCACTTCTGTTTCACAGGGAGGCTGATGGAAAAAGGAAGCAAGCTGGACCCATCCTCCCTGCTCACAGAGGGC
 561 ACTGTGGTCACACACAGTGCCTCCTCTGCCAGTTCCTTTATTGAAAGAGGTGTGCTGGCTGGCCACGGTGGCTTACACCT
 641 GTAATCCCAGCACTTTGGGAGGCCGAGGCGAGCAGATCACGAGGTCAGGAGACCGAGACCATCCTGGCTAACATGGTGAA
 721 ACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGA
 801 GGCAGGAGAATGGTATGAACCAGGGAGGCGGAGCTTGCAGTGAGCCGAGATCACGCTACTGCACTCCAGCCTGGGTGACA
 881 GCACGAGATGCCGTCTTAAAAAAACAAAAAAGAGGTGTGCTGCTTGTCAGCATGTATTGTCACGGACACTCAATAAGTGC
 961 CATTTTGGACTGTCAAATTTAGATGCTTTGTTTCAGAAAGATAAGCCAGCATTTAGTTTTAAATCACTTTCCTGGTTTGT
1041 AACTTGATGCTGTTTAGTTAAATTGCTAGTTTTCCTAACACTACAATATTAATTCTTCTCGTGGAAGTGTACTGATTTAT
1121 TATTTTTATTCCAAGTCAGCAGATTTGGAAGCATTGTGGTAAAGTCTAAGGTTTTCATATCCATAGTGCTGTTTGGTGAG
1201 TACCGGCAGTACAGTTGAGGGGAGCAGGGAACAGCATTGCCCCGTATTGAAGGTGGAGATGGTTACATTCTTCACTGCTT
1281 TTTGCATTTTGAGTTGTGTGCCTATAAAATTTGGCCAAACCATTTTATTATTTTGTTCAAACTTGACTAAGCTGAGTGAT
1361 CTAAAATTATACAGAACCTAAATCAAAGAAGAGAATGTAAAGTCCTTTAGTTACTTCTAAGAATTTGAAGTCAAGCACGA
1441 ATCTAAGACATAGATTATTTTTATATAGCTAATGAAGAGTATGTTACGAAATTGTTGGGTTTTTGGGGTATTGAGGGTGG
1521 CAAATTTTGTGAATCATGCATGCTTCACAGAAACAACCAGGTTTTTCCAGAATTAGTCTGGATCAGTGCCTAACAAAGCT
1601 GTTATTAATTCTCCACACATGAGTCTGGCTAACTGGGCCAGCTCTCATGTTTTACTCCTGTCTGGCTACAAATAGCACTG
1681 TGCATAGTAGCCCTGTTTCCCCATGGTGTTGGACTGTGGTAAAGTATGTTGTGACATACTGGAATTCTAATAATCCTGTT
1761 GTAAGTATGTACAGAATCTATGTAACTTATTGTTGACATACAGAGGTTTGGGAAGTAGTCTAATGGACATTCCTTACAAT
1841 AGAATGGCTGGGAAGGGAAAGAAAAAAAAAAAAAAACTACCTAACTCCAATCTTAATGTTGTAGTTTTATAGCAAACAAA
1921 AATTGTCAGCTTTTTGTATTGAAAGGTCAGTGGTGGTAAGACAAGGTGTCTTGTAAATTAAGATTTTAAGAAGTGCATTA
2001 AAATGTTTTAGAATTACTCTGGGAATTCTGTATATCACACTAAAATTTTTATATCATTATGTTAATAAAAGTTATTGACT
2081 TTGTAATTCTGCATTTTGAAATGTGTGAAAAGGGTCTTTAAATTACCCCGAATAGGTTGTATCTTATTTTGCTTTTTTTC
2161 TGACTATAAAAGCAGTTATGCTTATAGCATAAAATCTAGAAAGCACATTAAAGTATAAAGAAAATTAAAATTTCTTATAA
2241 TTCTACCTCTGAGTAAACAGCAGCATTCGTATGTAACATAAACCCTCTCAGGGATTTATTTTTTCTTTTTAAAAATTTTT
2321 TACAAAATTAGGATCAAGTGCTTTTTTAAATAATTTGCTTTTGTACTTAATAAATTATAGACTTTAAAATC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gacacacucCUUGUUCUCUGUu 5'
                   ||  :||||||| 
Target 5' attttaacaGATGGAGAGACAa 3'
 223 - 244 145.00 -10.90
2 
miRNA  3' gacACACUCCUUGUUCUCUGUu 5'
             |||||||||: | ||:|| 
Target 5' catTGTGAGGAATCACAGGCAc 3'
 273 - 294 135.00 -16.60
3 
miRNA  3' gacacaCUCCUUGUUCUCUGuu 5'
                ||||  ||:|||||  
Target 5' gatcacGAGG-TCAGGAGACcg 3'
 675 - 695 123.00 -15.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31556938 3 COSMIC
COSN18743606 13 COSMIC
COSN21336622 15 COSMIC
COSN507924 26 COSMIC
COSN31662787 31 COSMIC
COSN31495456 32 COSMIC
COSN30479835 49 COSMIC
COSN30490632 50 COSMIC
COSN30450185 53 COSMIC
COSN31488772 58 COSMIC
COSN13889656 74 COSMIC
COSN31958691 86 COSMIC
COSN30520774 88 COSMIC
COSN30520575 89 COSMIC
COSN31614329 90 COSMIC
COSN30528684 96 COSMIC
COSN30465772 141 COSMIC
COSN30473920 144 COSMIC
COSN30542446 160 COSMIC
COSN31523447 196 COSMIC
COSN31590770 213 COSMIC
COSN31540184 270 COSMIC
COSN31563484 298 COSMIC
COSN31584370 370 COSMIC
COSN28353601 772 COSMIC
COSN5988246 1153 COSMIC
COSN22188228 1228 COSMIC
COSN9160694 1270 COSMIC
COSN32057299 1488 COSMIC
COSN9160695 1512 COSMIC
COSN20093896 1514 COSMIC
COSN20093897 1862 COSMIC
COSN27454990 1862 COSMIC
COSN1257907 1877 COSMIC
COSN31961936 1942 COSMIC
COSN31961937 2130 COSMIC
COSN20117116 2160 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1021487019 3 dbSNP
rs376994848 4 dbSNP
rs200312534 7 dbSNP
rs545714964 9 dbSNP
rs1325633301 10 dbSNP
rs8127941 13 dbSNP
rs376887750 14 dbSNP
rs761953374 15 dbSNP
rs1183464753 18 dbSNP
rs1212506039 19 dbSNP
rs1035406006 21 dbSNP
rs1279294269 22 dbSNP
rs1472448580 23 dbSNP
rs199589559 25 dbSNP
rs750662986 26 dbSNP
rs1470620312 27 dbSNP
rs756306486 28 dbSNP
rs778705014 29 dbSNP
rs376255640 30 dbSNP
rs549753889 34 dbSNP
rs1329731269 36 dbSNP
rs561666831 39 dbSNP
rs746984659 40 dbSNP
rs770420809 41 dbSNP
rs780736341 42 dbSNP
rs201574827 51 dbSNP
rs9980058 54 dbSNP
rs1462982065 55 dbSNP
rs922096824 58 dbSNP
rs1167778098 62 dbSNP
rs565670027 64 dbSNP
rs530235267 65 dbSNP
rs1051813536 73 dbSNP
rs1473995967 74 dbSNP
rs1256608844 81 dbSNP
rs912013062 88 dbSNP
rs915208858 89 dbSNP
rs935314762 90 dbSNP
rs1045700709 96 dbSNP
rs1264163037 105 dbSNP
rs1052467744 110 dbSNP
rs891693009 111 dbSNP
rs906725287 112 dbSNP
rs1293930064 113 dbSNP
rs1353761314 115 dbSNP
rs1004106157 116 dbSNP
rs1166173794 120 dbSNP
rs1011462881 122 dbSNP
rs1296963839 123 dbSNP
rs1418903364 124 dbSNP
rs1414931776 126 dbSNP
rs1465529327 127 dbSNP
rs534380913 136 dbSNP
rs905664340 137 dbSNP
rs1474057548 143 dbSNP
rs1367513354 153 dbSNP
rs370626344 155 dbSNP
rs1182008443 157 dbSNP
rs896903203 161 dbSNP
rs1248101155 163 dbSNP
rs993876684 175 dbSNP
rs1273934264 180 dbSNP
rs552541618 181 dbSNP
rs952451021 196 dbSNP
rs1006834282 197 dbSNP
rs1239953288 198 dbSNP
rs1337937631 202 dbSNP
rs1018597363 213 dbSNP
rs976990205 214 dbSNP
rs1341922088 218 dbSNP
rs1397748492 227 dbSNP
rs1327394807 231 dbSNP
rs923738680 232 dbSNP
rs1454977164 243 dbSNP
rs956795967 243 dbSNP
rs989495090 243 dbSNP
rs1361896523 247 dbSNP
rs570801272 251 dbSNP
rs1454707921 252 dbSNP
rs1254801433 253 dbSNP
rs538158616 256 dbSNP
rs1220499713 263 dbSNP
rs948030979 264 dbSNP
rs895609139 269 dbSNP
rs1353090105 274 dbSNP
rs75388045 289 dbSNP
rs1259382076 294 dbSNP
rs1346425245 296 dbSNP
rs981074884 297 dbSNP
rs556093161 298 dbSNP
rs1306271536 310 dbSNP
rs1210598291 315 dbSNP
rs1434377677 316 dbSNP
rs1383601629 317 dbSNP
rs1287208301 333 dbSNP
rs1435119552 346 dbSNP
rs1396592467 349 dbSNP
rs1171721619 358 dbSNP
rs1477630443 358 dbSNP
rs1377189748 367 dbSNP
rs1004939575 376 dbSNP
rs928198002 379 dbSNP
rs939573323 384 dbSNP
rs1261316386 386 dbSNP
rs1489355885 399 dbSNP
rs760667507 405 dbSNP
rs1191344474 407 dbSNP
rs1218030673 415 dbSNP
rs1036534001 418 dbSNP
rs1270335996 432 dbSNP
rs897959986 440 dbSNP
rs73907517 448 dbSNP
rs2839338 450 dbSNP
rs1297206951 456 dbSNP
rs767424021 461 dbSNP
rs1029665302 464 dbSNP
rs1414978353 466 dbSNP
rs1377070588 467 dbSNP
rs1393192299 469 dbSNP
rs1434094913 481 dbSNP
rs137978795 486 dbSNP
rs1169515541 490 dbSNP
rs987675992 498 dbSNP
rs1476432685 501 dbSNP
rs76472538 503 dbSNP
rs9941895 512 dbSNP
rs1398540914 521 dbSNP
rs1317165073 543 dbSNP
rs935430936 545 dbSNP
rs1300449273 546 dbSNP
rs988644615 549 dbSNP
rs1208455415 554 dbSNP
rs1442407990 561 dbSNP
rs1437980649 566 dbSNP
rs1274339942 573 dbSNP
rs1272631459 589 dbSNP
rs915221003 591 dbSNP
rs536046702 594 dbSNP
rs9941869 608 dbSNP
rs1233578010 610 dbSNP
rs9941870 619 dbSNP
rs1356323886 622 dbSNP
rs937173189 626 dbSNP
rs576354945 627 dbSNP
rs9941896 635 dbSNP
rs553764497 640 dbSNP
rs528864981 652 dbSNP
rs1170016936 657 dbSNP
rs1015108021 663 dbSNP
rs898794579 665 dbSNP
rs143653090 666 dbSNP
rs1452479866 670 dbSNP
rs927946161 671 dbSNP
rs1251217771 676 dbSNP
rs1456808137 681 dbSNP
rs559395848 682 dbSNP
rs1256917676 684 dbSNP
rs1453678440 685 dbSNP
rs1029244216 687 dbSNP
rs1213769981 692 dbSNP
rs386819456 693 dbSNP
rs9941875 694 dbSNP
rs9941876 695 dbSNP
rs1227341917 701 dbSNP
rs1287973457 705 dbSNP
rs1373809617 714 dbSNP
rs1281047559 723 dbSNP
rs1444521792 724 dbSNP
rs919441243 724 dbSNP
rs1019094242 725 dbSNP
rs570715222 727 dbSNP
rs531858339 731 dbSNP
rs1441752582 734 dbSNP
rs9941793 741 dbSNP
rs988203148 755 dbSNP
rs568450871 756 dbSNP
rs1409240169 761 dbSNP
rs150832084 765 dbSNP
rs1438464416 766 dbSNP
rs1238093584 769 dbSNP
rs942426579 771 dbSNP
rs1332608528 772 dbSNP
rs981220344 778 dbSNP
rs777621087 783 dbSNP
rs1379818444 788 dbSNP
rs1244420522 791 dbSNP
rs1220431864 792 dbSNP
rs553927129 796 dbSNP
rs1286165229 803 dbSNP
rs9941794 812 dbSNP
rs937289587 813 dbSNP
rs1304072689 816 dbSNP
rs1236356818 828 dbSNP
rs8132624 830 dbSNP
rs895630479 831 dbSNP
rs1291838388 833 dbSNP
rs1436080609 835 dbSNP
rs940524105 840 dbSNP
rs1230267380 841 dbSNP
rs776127412 847 dbSNP
rs9941889 848 dbSNP
rs892328973 853 dbSNP
rs1199392177 856 dbSNP
rs1239929934 857 dbSNP
rs898948179 859 dbSNP
rs9941897 864 dbSNP
rs1190115994 865 dbSNP
rs543674340 872 dbSNP
rs555677611 881 dbSNP
rs888797097 885 dbSNP
rs115448966 886 dbSNP
rs1236471444 889 dbSNP
rs1310337369 893 dbSNP
rs541011109 894 dbSNP
rs956860479 896 dbSNP
rs1280345536 898 dbSNP
rs960671758 898 dbSNP
rs1465664342 899 dbSNP
rs540496034 906 dbSNP
rs1406292659 915 dbSNP
rs765423633 923 dbSNP
rs750683865 924 dbSNP
rs1328549537 933 dbSNP
rs984962272 939 dbSNP
rs75620096 944 dbSNP
rs942458770 945 dbSNP
rs1417060532 949 dbSNP
rs980726214 950 dbSNP
rs532996717 954 dbSNP
rs1291633009 955 dbSNP
rs1482270890 959 dbSNP
rs766216262 963 dbSNP
rs1255357119 968 dbSNP
rs926599685 970 dbSNP
rs1308190399 973 dbSNP
rs866729266 1001 dbSNP
rs1260044742 1005 dbSNP
rs960715415 1010 dbSNP
rs1334520920 1013 dbSNP
rs922285239 1020 dbSNP
rs149827119 1035 dbSNP
rs1377356229 1038 dbSNP
rs1302799684 1053 dbSNP
rs544726997 1061 dbSNP
rs1052335153 1067 dbSNP
rs892379234 1069 dbSNP
rs564307329 1084 dbSNP
rs917163764 1085 dbSNP
rs1418114437 1086 dbSNP
rs1189108114 1088 dbSNP
rs1337292662 1089 dbSNP
rs1255153191 1090 dbSNP
rs940531418 1099 dbSNP
rs1043957433 1101 dbSNP
rs531775966 1102 dbSNP
rs1196828271 1105 dbSNP
rs1036627413 1110 dbSNP
rs1256534761 1117 dbSNP
rs549992634 1118 dbSNP
rs1317303179 1120 dbSNP
rs920342215 1133 dbSNP
rs568736722 1135 dbSNP
rs1035089879 1147 dbSNP
rs1312414799 1155 dbSNP
rs1185583640 1159 dbSNP
rs1392528684 1162 dbSNP
rs1050190870 1164 dbSNP
rs888744907 1169 dbSNP
rs1256366278 1170 dbSNP
rs145806906 1171 dbSNP
rs780522817 1178 dbSNP
rs1477978437 1181 dbSNP
rs1328770088 1182 dbSNP
rs960734349 1187 dbSNP
rs570033245 1192 dbSNP
rs1460869734 1197 dbSNP
rs993496279 1203 dbSNP
rs1167817751 1205 dbSNP
rs752232399 1206 dbSNP
rs952283590 1207 dbSNP
rs148597214 1210 dbSNP
rs892750277 1216 dbSNP
rs565958674 1221 dbSNP
rs910730487 1223 dbSNP
rs964890157 1224 dbSNP
rs1268096926 1227 dbSNP
rs1211898827 1229 dbSNP
rs1022914820 1233 dbSNP
rs975596874 1237 dbSNP
rs117842352 1245 dbSNP
rs1002223420 1248 dbSNP
rs558266242 1251 dbSNP
rs1033728842 1255 dbSNP
rs1324786391 1268 dbSNP
rs570190584 1272 dbSNP
rs960661856 1276 dbSNP
rs1256486102 1285 dbSNP
rs1371128203 1286 dbSNP
rs1347125104 1287 dbSNP
rs1384780192 1287 dbSNP
rs1389563572 1293 dbSNP
rs1289021508 1294 dbSNP
rs1208450438 1297 dbSNP
rs992157443 1301 dbSNP
rs917153272 1303 dbSNP
rs1421304798 1306 dbSNP
rs962296768 1319 dbSNP
rs1378199519 1323 dbSNP
rs1158007105 1329 dbSNP
rs537238406 1342 dbSNP
rs1279361880 1347 dbSNP
rs933697790 1351 dbSNP
rs972017188 1361 dbSNP
rs1450154858 1366 dbSNP
rs1488377482 1374 dbSNP
rs1195444680 1385 dbSNP
rs920399615 1392 dbSNP
rs1266945686 1393 dbSNP
rs796562388 1405 dbSNP
rs1052052635 1418 dbSNP
rs1284267050 1437 dbSNP
rs555640957 1440 dbSNP
rs1199030899 1445 dbSNP
rs1349220193 1448 dbSNP
rs910336411 1464 dbSNP
rs1378716147 1467 dbSNP
rs1295879736 1471 dbSNP
rs913535092 1474 dbSNP
rs755729499 1476 dbSNP
rs1455971931 1477 dbSNP
rs1435328008 1485 dbSNP
rs142964875 1488 dbSNP
rs540970795 1489 dbSNP
rs1170671824 1495 dbSNP
rs1375244353 1500 dbSNP
rs1477087962 1502 dbSNP
rs905046605 1503 dbSNP
rs1194690063 1505 dbSNP
rs945590982 1507 dbSNP
rs777567730 1509 dbSNP
rs1044003443 1512 dbSNP
rs552905977 1513 dbSNP
rs555967349 1514 dbSNP
rs1443290849 1516 dbSNP
rs151152996 1518 dbSNP
rs1383135638 1520 dbSNP
rs563024843 1524 dbSNP
rs896576898 1534 dbSNP
rs1381704628 1540 dbSNP
rs1302149859 1544 dbSNP
rs993548561 1547 dbSNP
rs1373006174 1561 dbSNP
rs772507920 1562 dbSNP
rs1277401244 1571 dbSNP
rs780472450 1574 dbSNP
rs896597082 1580 dbSNP
rs952003792 1582 dbSNP
rs1332139329 1586 dbSNP
rs1413795059 1593 dbSNP
rs1401631153 1595 dbSNP
rs575044156 1599 dbSNP
rs1421770098 1605 dbSNP
rs867773945 1607 dbSNP
rs1013525436 1611 dbSNP
rs1193147832 1614 dbSNP
rs1473344843 1618 dbSNP
rs1239539797 1619 dbSNP
rs1015979460 1626 dbSNP
rs961416852 1634 dbSNP
rs972351309 1640 dbSNP
rs1017842635 1649 dbSNP
rs1217743788 1663 dbSNP
rs747435298 1670 dbSNP
rs1315449678 1674 dbSNP
rs951850783 1679 dbSNP
rs986000598 1685 dbSNP
rs910285580 1692 dbSNP
rs1228486438 1694 dbSNP
rs543603684 1696 dbSNP
rs1258571930 1697 dbSNP
rs976273402 1702 dbSNP
rs141144129 1707 dbSNP
rs183720502 1711 dbSNP
rs1377553347 1715 dbSNP
rs1333214214 1721 dbSNP
rs913537076 1735 dbSNP
rs945066159 1737 dbSNP
rs1170275719 1754 dbSNP
rs1044336712 1768 dbSNP
rs547788672 1773 dbSNP
rs904150129 1780 dbSNP
rs938161399 1781 dbSNP
rs1416473507 1785 dbSNP
rs1395053382 1791 dbSNP
rs188331625 1799 dbSNP
rs1472796652 1801 dbSNP
rs566389345 1802 dbSNP
rs896670781 1818 dbSNP
rs1013598914 1825 dbSNP
rs1236988006 1830 dbSNP
rs1015680475 1834 dbSNP
rs1377733526 1838 dbSNP
rs115778878 1841 dbSNP
rs1203040851 1854 dbSNP
rs1362271318 1855 dbSNP
rs1227540286 1858 dbSNP
rs1453324512 1858 dbSNP
rs1294125534 1860 dbSNP
rs373884698 1861 dbSNP
rs1237824721 1862 dbSNP
rs1351828892 1862 dbSNP
rs1449326713 1862 dbSNP
rs57017000 1862 dbSNP
rs577827257 1862 dbSNP
rs59898716 1862 dbSNP
rs918782486 1862 dbSNP
rs1438859927 1863 dbSNP
rs1325117093 1864 dbSNP
rs1056308973 1866 dbSNP
rs1377634345 1867 dbSNP
rs1225256474 1869 dbSNP
rs1361515815 1871 dbSNP
rs1161003950 1873 dbSNP
rs896293989 1874 dbSNP
rs1379203444 1876 dbSNP
rs1315901898 1877 dbSNP
rs929395913 1877 dbSNP
rs1245097000 1878 dbSNP
rs1277986182 1880 dbSNP
rs551845143 1881 dbSNP
rs887807281 1891 dbSNP
rs570154320 1894 dbSNP
rs1006214825 1900 dbSNP
rs1018312352 1902 dbSNP
rs1352882706 1903 dbSNP
rs1212575923 1904 dbSNP
rs1219891124 1923 dbSNP
rs1369746984 1924 dbSNP
rs118001866 1926 dbSNP
rs1404524876 1928 dbSNP
rs995554749 1930 dbSNP
rs1361614986 1941 dbSNP
rs900756530 1947 dbSNP
rs1027982258 1953 dbSNP
rs535290507 1956 dbSNP
rs951966441 1970 dbSNP
rs1179248778 1984 dbSNP
rs1248873573 1991 dbSNP
rs1418467775 2006 dbSNP
rs1418669944 2011 dbSNP
rs985948312 2012 dbSNP
rs1345106152 2017 dbSNP
rs1017421198 2018 dbSNP
rs867424605 2019 dbSNP
rs976199957 2020 dbSNP
rs146924203 2031 dbSNP
rs777052166 2033 dbSNP
rs1400862271 2035 dbSNP
rs1444311137 2037 dbSNP
rs1296190894 2040 dbSNP
rs987872544 2060 dbSNP
rs34222756 2064 dbSNP
rs1372388897 2067 dbSNP
rs1396430741 2068 dbSNP
rs1020646272 2076 dbSNP
rs979162069 2077 dbSNP
rs979125825 2080 dbSNP
rs1276548612 2084 dbSNP
rs761921331 2090 dbSNP
rs1341340919 2094 dbSNP
rs549114972 2115 dbSNP
rs2839339 2117 dbSNP
rs938233873 2130 dbSNP
rs1258145402 2131 dbSNP
rs917781119 2132 dbSNP
rs1055320662 2144 dbSNP
rs1465878413 2147 dbSNP
rs1425332204 2151 dbSNP
rs144883358 2153 dbSNP
rs57763214 2153 dbSNP
rs918044312 2158 dbSNP
rs1477385558 2159 dbSNP
rs1323448102 2166 dbSNP
rs1256545525 2168 dbSNP
rs534885199 2169 dbSNP
rs1482221688 2174 dbSNP
rs1235859297 2180 dbSNP
rs9978600 2183 dbSNP
rs1318613060 2188 dbSNP
rs1260265327 2208 dbSNP
rs556253474 2216 dbSNP
rs1307329839 2221 dbSNP
rs577546371 2239 dbSNP
rs1259873835 2241 dbSNP
rs1313860071 2248 dbSNP
rs538246911 2256 dbSNP
rs1377617701 2263 dbSNP
rs995894893 2268 dbSNP
rs2839340 2270 dbSNP
rs1424455582 2284 dbSNP
rs891990872 2285 dbSNP
rs1166628243 2286 dbSNP
rs1422052407 2290 dbSNP
rs541639537 2294 dbSNP
rs1179915650 2295 dbSNP
rs1384536505 2297 dbSNP
rs144530806 2299 dbSNP
rs57810823 2299 dbSNP
rs1458298665 2300 dbSNP
rs1240072812 2301 dbSNP
rs1197043150 2306 dbSNP
rs7282696 2309 dbSNP
rs1353910280 2311 dbSNP
rs1266470579 2314 dbSNP
rs937050367 2316 dbSNP
rs1017535782 2323 dbSNP
rs1314992199 2324 dbSNP
rs1320233328 2324 dbSNP
rs7278982 2328 dbSNP
rs997396340 2332 dbSNP
rs1021123176 2348 dbSNP
rs1306428307 2367 dbSNP
rs1413800689 2370 dbSNP
rs1390514932 2377 dbSNP
rs959280243 2378 dbSNP
rs1294850318 2381 dbSNP
rs562272984 2387 dbSNP
rs751396179 2394 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000318711.7 | 3UTR | ACAAUUUGACUUCCUCUUUUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
150 hsa-miR-6818-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT112122 TIMM17A translocase of inner mitochondrial membrane 17A 2 6
MIRT262243 BAMBI BMP and activin membrane bound inhibitor 2 2
MIRT446689 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT449923 TPST2 tyrosylprotein sulfotransferase 2 2 2
MIRT464356 USP12P1 ubiquitin specific peptidase 12 pseudogene 1 2 2
MIRT485703 CBX7 chromobox 7 2 2
MIRT497478 XPR1 xenotropic and polytropic retrovirus receptor 1 2 4
MIRT499435 ODF2L outer dense fiber of sperm tails 2 like 2 8
MIRT514246 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT515032 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515065 PLA2G2C phospholipase A2 group IIC 2 2
MIRT520235 USP9X ubiquitin specific peptidase 9, X-linked 2 4
MIRT523685 FHL2 four and a half LIM domains 2 2 4
MIRT525524 FSIP2 fibrous sheath interacting protein 2 2 2
MIRT525838 FAR2 fatty acyl-CoA reductase 2 2 2
MIRT528583 PTGER3 prostaglandin E receptor 3 2 2
MIRT530404 SULT1B1 sulfotransferase family 1B member 1 2 2
MIRT530703 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT535118 PLSCR4 phospholipid scramblase 4 2 2
MIRT539880 IRGQ immunity related GTPase Q 2 2
MIRT540195 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT540938 SLC25A43 solute carrier family 25 member 43 2 2
MIRT541501 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT542544 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT542559 ZNF280B zinc finger protein 280B 2 2
MIRT542689 RPS15A ribosomal protein S15a 2 2
MIRT548759 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT549735 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT553060 ULK1 unc-51 like autophagy activating kinase 1 2 2
MIRT556303 MAP2K4 mitogen-activated protein kinase kinase 4 2 2
MIRT560816 DIP2A disco interacting protein 2 homolog A 2 2
MIRT567455 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT575143 Cd93 CD93 antigen 2 2
MIRT607217 ACSM2A acyl-CoA synthetase medium chain family member 2A 2 4
MIRT607286 CD300E CD300e molecule 2 6
MIRT607302 RREB1 ras responsive element binding protein 1 2 6
MIRT608645 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT611095 MYO1F myosin IF 2 4
MIRT611576 CLEC4D C-type lectin domain family 4 member D 2 2
MIRT614271 WSCD2 WSC domain containing 2 2 2
MIRT614855 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT617114 KANK2 KN motif and ankyrin repeat domains 2 2 2
MIRT618002 SLC9A3R2 SLC9A3 regulator 2 2 2
MIRT618028 CTU1 cytosolic thiouridylase subunit 1 2 2
MIRT619062 BSND barttin CLCNK type accessory beta subunit 2 4
MIRT619289 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619356 CFHR5 complement factor H related 5 2 2
MIRT620725 CCL16 C-C motif chemokine ligand 16 2 2
MIRT620913 LRRTM2 leucine rich repeat transmembrane neuronal 2 2 2
MIRT621902 TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 2 2
MIRT622025 STAT5A signal transducer and activator of transcription 5A 2 2
MIRT622556 PTPN3 protein tyrosine phosphatase, non-receptor type 3 2 2
MIRT623137 NCKAP1 NCK associated protein 1 2 2
MIRT623140 NAV2 neuron navigator 2 2 2
MIRT623701 HHAT hedgehog acyltransferase 2 2
MIRT624602 B3GALT5 beta-1,3-galactosyltransferase 5 2 2
MIRT625944 OLIG3 oligodendrocyte transcription factor 3 2 2
MIRT625988 SPATA17 spermatogenesis associated 17 2 2
MIRT628028 LSAMP limbic system-associated membrane protein 2 2
MIRT635521 MC2R melanocortin 2 receptor 2 2
MIRT638916 CALCOCO2 calcium binding and coiled-coil domain 2 2 2
MIRT639796 EPX eosinophil peroxidase 2 2
MIRT640344 C1orf210 chromosome 1 open reading frame 210 2 2
MIRT644806 VLDLR very low density lipoprotein receptor 2 2
MIRT645303 AGTRAP angiotensin II receptor associated protein 2 2
MIRT645629 SYTL4 synaptotagmin like 4 2 2
MIRT645683 TBC1D13 TBC1 domain family member 13 2 2
MIRT646216 DUSP10 dual specificity phosphatase 10 2 2
MIRT648505 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT649748 UTP20 UTP20, small subunit processome component 2 2
MIRT649797 CLEC2D C-type lectin domain family 2 member D 2 2
MIRT650482 UFM1 ubiquitin fold modifier 1 2 2
MIRT653199 SP9 Sp9 transcription factor 2 2
MIRT655741 NR2F2 nuclear receptor subfamily 2 group F member 2 2 2
MIRT659978 C2CD2L C2CD2 like 2 2
MIRT660350 BAG4 BCL2 associated athanogene 4 2 2
MIRT662185 MEI1 meiotic double-stranded break formation protein 1 2 2
MIRT663290 TECPR2 tectonin beta-propeller repeat containing 2 2 2
MIRT666817 PRCP prolylcarboxypeptidase 2 2
MIRT671665 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT671838 PDE3A phosphodiesterase 3A 2 2
MIRT672193 F2 coagulation factor II, thrombin 2 2
MIRT673870 KLF2 Kruppel like factor 2 2 2
MIRT683563 CARD8 caspase recruitment domain family member 8 2 2
MIRT684545 ZNF708 zinc finger protein 708 2 2
MIRT685140 TACR3 tachykinin receptor 3 2 2
MIRT685413 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT686039 SLC5A5 solute carrier family 5 member 5 2 2
MIRT686126 B4GALT7 beta-1,4-galactosyltransferase 7 2 2
MIRT687473 NHLRC2 NHL repeat containing 2 2 2
MIRT687946 HHIP hedgehog interacting protein 2 2
MIRT688171 FRRS1 ferric chelate reductase 1 2 2
MIRT688295 FAM208A family with sequence similarity 208 member A 2 2
MIRT689044 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT689194 ZNF574 zinc finger protein 574 2 2
MIRT691253 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT695358 PHAX phosphorylated adaptor for RNA export 2 2
MIRT696674 APOC3 apolipoprotein C3 2 2
MIRT697358 ZNF394 zinc finger protein 394 2 2
MIRT697604 XIAP X-linked inhibitor of apoptosis 2 2
MIRT697726 USP6NL USP6 N-terminal like 2 2
MIRT697776 UBXN7 UBX domain protein 7 2 2
MIRT698478 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT698984 SPAG9 sperm associated antigen 9 2 2
MIRT699851 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT700172 RIMKLB ribosomal modification protein rimK like family member B 2 2
MIRT704339 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT704589 CLN8 CLN8, transmembrane ER and ERGIC protein 2 2
MIRT705836 AHCY adenosylhomocysteinase 2 2
MIRT707085 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT707132 TRA2B transformer 2 beta homolog 2 2
MIRT707145 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT707234 H6PD hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase 2 2
MIRT707347 XPNPEP3 X-prolyl aminopeptidase 3 2 2
MIRT707445 PPFIBP1 PPFIA binding protein 1 2 2
MIRT707494 AXL AXL receptor tyrosine kinase 2 2
MIRT707638 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT707690 FAM118A family with sequence similarity 118 member A 2 2
MIRT707706 CDC6 cell division cycle 6 2 2
MIRT707817 TMEM170A transmembrane protein 170A 2 2
MIRT707957 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT707996 NUDT4 nudix hydrolase 4 2 2
MIRT708026 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT708058 LIX1L limb and CNS expressed 1 like 2 2
MIRT708089 KIAA1671 KIAA1671 2 2
MIRT708125 GK5 glycerol kinase 5 (putative) 2 2
MIRT708194 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT708201 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT710503 BSDC1 BSD domain containing 1 2 2
MIRT711308 IFNGR2 interferon gamma receptor 2 2 2
MIRT711740 DTX1 deltex E3 ubiquitin ligase 1 2 2
MIRT713202 SOCS6 suppressor of cytokine signaling 6 2 2
MIRT714380 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT715210 NPVF neuropeptide VF precursor 2 2
MIRT715559 EPHB4 EPH receptor B4 2 2
MIRT715835 SZT2 SZT2, KICSTOR complex subunit 2 2
MIRT716680 HLA-B major histocompatibility complex, class I, B 2 2
MIRT717660 THBS2 thrombospondin 2 2 2
MIRT718132 PALM paralemmin 2 2
MIRT718322 METTL7A methyltransferase like 7A 2 2
MIRT720693 RNF217 ring finger protein 217 2 2
MIRT720727 ELOVL7 ELOVL fatty acid elongase 7 2 2
MIRT721376 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT721983 FAM214B family with sequence similarity 214 member B 2 2
MIRT722163 MRPS15 mitochondrial ribosomal protein S15 2 2
MIRT722881 MOB3A MOB kinase activator 3A 2 2
MIRT723218 FMNL3 formin like 3 2 2
MIRT723788 MUC17 mucin 17, cell surface associated 2 2
MIRT724093 TMEM199 transmembrane protein 199 2 2
MIRT725265 OSTM1 osteopetrosis associated transmembrane protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6818-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-6818-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-6818-3p Cisplatin 5460033 NSC119875 approved resistant cell line (MGC-803)

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