pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol GAL3ST3   
Synonyms GAL3ST-3, GAL3ST2
Description galactose-3-O-sulfotransferase 3
Transcript NM_033036   
Expression
Putative miRNA Targets on GAL3ST3
3'UTR of GAL3ST3
(miRNA target sites are highlighted)
>GAL3ST3|NM_033036|3'UTR
   1 GCTCCGCAGGCCTCCAGGAGTATGGGTCCTGCCCTGCCCTCCCAGGAGTCCAGCCAGGGGCTGCCTCCATGTCCTGCCCC
  81 CATGAGAGCCCTTTCTTTTCAAGGGGCTTGAGTCCCTCGCTGAACTTTGGGGTACGCCTCCCTATCTGAGCCCCCGCTCC
 161 CGATCGTGGGCTGAACCTTGCCTTCGGGCACGGCGCTGATAGGCTGGATCCAGCGCTGGGCCACCCTCTCCTTCCCAGCT
 241 GGTTGGTGATTTTGACAAGAGGCCTGAGGGCTGTCCAGAACTGCTCACCCTGCCTTTTTCTGGGGGCTGAGCCCCCACAA
 321 CCTGTCTTTTCCAAGTGGATAAGCCCAGGCCCCATGGAGAGAGGCTCAGCCCTAGGGAAAGGCTGCTCTTGCTCTCCCTC
 401 CCAGGGCTTGAGGCTCCCTATACTTTTCTGTCTTCCAGGTTCTACCCTCCCCACAGACCTAAGCTGCTCCCAGTCTCCCA
 481 GAACCAAGAGTTCTTGGGTTGGGATTTTTGTTTGGTTGGTTTTTCTTTTTTTTAATAAAACATCTTTAAAATGTGCGAGT
 561 TGTATGTCAGTCATAGAAGCCGGATTCCCCACATTTGAGGATGAAACGGATGCCCAGGAGGAGCTGTGGCTGGACCCATG
 641 AGGATGGGGGCCTGGACTCAAGGTCCCCCGCCACCTGGCATAGGCCTACAACCCTCCTCAACCGCTTGACCGACTGGGCC
 721 CCCAACACAGACTGGCCACCTTAGCCCCACTCACTTTCCACATCGTTCTTTTTCACAAAATTCTGCGACATTTACTGAGC
 801 ATCATCTCTGTAACTTGGGGATACAGGTGAACCAGATAGATAGGGCCTTATTTTCATGGAGCTTATGGGGAAACATTGGA
 881 ACAGGAGCAAGACAGGTAAGCAAAGAGGAAGGACTGGAGGGGTTAGAGCACAACACCTCTTTGGGTGGAAGGAGGATCAT
 961 TTTCAGATAAGGAGCTGCCTAACTCAGAATTTGACCTCCTCCTGTGAATCACTGACTTCACTAATGGCCTGCTTTCCTCA
1041 CAAGAAGACAACTTGGACTCAGATGAAGACCAGTCCCTTTCTGCAGTTTCCTTTAACACAGCAAGATAGCCAGCACTTCC
1121 AGGTGAAATCTCCCTTAAGACTAGCAGAGAATTGGAACTTTTTCTGTTACTTTCTTCAGAGCTATATCGACGTATCTGGA
1201 CAAGTGATAAAAAACAATAGCTATTATGGTCTACGGTGTGCCAGCCACTGTTTAAGGGCTTTATGTATGTTAACTTTGGA
1281 GATGGGTGCCGTTTTCCAGGTGAGGGAACTGAAACTTGGGGGAAATTAAGTCAGGGTCACACAGCCAGAAAGTGGCCACT
1361 AGGATCTCAACCAAGGCAGTGTGGCTTCAGAGTTTGTGCTCACAAGTGCTGTCTGTAGTGCCATTCAAATAAAAAAGGTC
1441 ACATGCCACAAGCTAGGCTGATTCCCAGCACCTTCCCCCAAAAGAATGTAAAGGGAAGAACCAGGACACTGCTATCAGCA
1521 ACTCTTTATCCAGTTTTTCATGGAGACAACGGTTGACCTGTTTGGACAATGGACATTACAGTGATTGATTGGCAGGATGC
1601 ATGACACGCTGGGCTTGAAAAGGGACTGTTTGTATGGCACCCCACTTTTTACCAGCAGAGCTCTGAAAAAGGCAATAATT
1681 AGAATCATGCAAAAGCATAATTAAGTTTCTGACATTAAGCAGCAGTAAAGAATTGTACCAGAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accacguuuucAUUAAC--ACCAAAAa 5'
                     |: |||  ||||||| 
Target 5' gttgggattttTGTTTGGTTGGTTTTt 3'
498 - 524 148.00 -8.44
2
miRNA  3' accACGUUUUCAUUAA-CACCAAAAa 5'
             | |  |: |::|| ||| |||| 
Target 5' tccTTCCCAGCTGGTTGGTGATTTTg 3'
229 - 254 126.00 -6.92
3
miRNA  3' accacGUUUUCAUUAACACCAAAaa 5'
               ||| ||  ||| |||| |  
Target 5' aaaaaCAATAGCTATTATGGTCTac 3'
1210 - 1234 116.00 -6.36
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN505901 80 COSMIC
COSN26548022 103 COSMIC
COSN17709128 135 COSMIC
COSN26576447 136 COSMIC
COSN20077383 154 COSMIC
COSN28804922 215 COSMIC
COSN4699030 318 COSMIC
COSN8584536 349 COSMIC
COSN20092381 488 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1425267759 5 dbSNP
rs376373263 6 dbSNP
rs1447140147 7 dbSNP
rs199609324 11 dbSNP
rs992162918 12 dbSNP
rs961027939 13 dbSNP
rs1472376566 20 dbSNP
rs760359414 21 dbSNP
rs74907097 23 dbSNP
rs537403406 26 dbSNP
rs539633550 31 dbSNP
rs759448535 32 dbSNP
rs1011387220 50 dbSNP
rs771322051 50 dbSNP
rs888853181 58 dbSNP
rs1008912379 64 dbSNP
rs1394006346 65 dbSNP
rs1383649339 73 dbSNP
rs776442889 86 dbSNP
rs1326897922 91 dbSNP
rs1429971653 100 dbSNP
rs1125078 103 dbSNP
rs187424964 113 dbSNP
rs1224342102 118 dbSNP
rs899317494 119 dbSNP
rs1334752450 128 dbSNP
rs1037885620 131 dbSNP
rs1374125895 132 dbSNP
rs1173004474 135 dbSNP
rs1207214735 136 dbSNP
rs12223318 150 dbSNP
rs1262906864 151 dbSNP
rs1427038555 153 dbSNP
rs1446900785 154 dbSNP
rs948448765 155 dbSNP
rs1260393273 157 dbSNP
rs183300843 161 dbSNP
rs1187483504 166 dbSNP
rs1056688818 179 dbSNP
rs948234930 183 dbSNP
rs1160041594 186 dbSNP
rs1461468676 188 dbSNP
rs938341806 191 dbSNP
rs1400016761 194 dbSNP
rs1296326911 195 dbSNP
rs924340324 200 dbSNP
rs746846264 208 dbSNP
rs1347463360 214 dbSNP
rs3814744 215 dbSNP
rs992652787 231 dbSNP
rs191337926 236 dbSNP
rs1329522681 238 dbSNP
rs939331091 242 dbSNP
rs1261659094 248 dbSNP
rs1350484809 261 dbSNP
rs923949988 268 dbSNP
rs1251752672 271 dbSNP
rs977341983 273 dbSNP
rs1490661380 283 dbSNP
rs1222517881 284 dbSNP
rs1229384770 288 dbSNP
rs796984549 291 dbSNP
rs947353197 296 dbSNP
rs914367766 300 dbSNP
rs771472121 304 dbSNP
rs1469497651 313 dbSNP
rs975247717 314 dbSNP
rs1367316548 319 dbSNP
rs964756982 321 dbSNP
rs1302596128 326 dbSNP
rs369019978 338 dbSNP
rs1393350175 350 dbSNP
rs74808436 360 dbSNP
rs529152907 361 dbSNP
rs1335406100 363 dbSNP
rs1238361499 365 dbSNP
rs772327912 367 dbSNP
rs1028701886 373 dbSNP
rs560467683 375 dbSNP
rs1360740893 382 dbSNP
rs987596231 392 dbSNP
rs748393365 405 dbSNP
rs954857961 415 dbSNP
rs114531991 419 dbSNP
rs1451929200 420 dbSNP
rs1197176670 427 dbSNP
rs1250709825 428 dbSNP
rs533139704 440 dbSNP
rs1436877030 446 dbSNP
rs1176502450 455 dbSNP
rs994126007 458 dbSNP
rs963679207 464 dbSNP
rs1445147241 470 dbSNP
rs1004576993 479 dbSNP
rs376517925 496 dbSNP
rs888018607 499 dbSNP
rs1298837759 505 dbSNP
rs1395987062 511 dbSNP
rs1016804187 512 dbSNP
rs1049378915 518 dbSNP
rs1354364626 527 dbSNP
rs948161759 530 dbSNP
rs1013044721 531 dbSNP
rs1309786360 534 dbSNP
rs1228897749 546 dbSNP
rs1251416365 547 dbSNP
rs1316889753 551 dbSNP
rs186545670 557 dbSNP
rs544660320 562 dbSNP
rs373373881 565 dbSNP
rs1244733897 566 dbSNP
rs778926295 579 dbSNP
rs894681689 580 dbSNP
rs534803996 581 dbSNP
rs1253926784 582 dbSNP
rs1430264641 590 dbSNP
rs1171174047 591 dbSNP
rs1386691209 593 dbSNP
rs1178921532 606 dbSNP
rs1002601299 608 dbSNP
rs902833975 623 dbSNP
rs575673978 640 dbSNP
rs1251189388 643 dbSNP
rs1295647183 646 dbSNP
rs1197537879 647 dbSNP
rs1316820439 649 dbSNP
rs1041402423 650 dbSNP
rs562070804 653 dbSNP
rs1273730986 661 dbSNP
rs1222937274 669 dbSNP
rs914502973 691 dbSNP
rs1323822062 692 dbSNP
rs181693607 694 dbSNP
rs1042767719 695 dbSNP
rs942510646 703 dbSNP
rs1336374098 704 dbSNP
rs1476922352 708 dbSNP
rs1309205127 711 dbSNP
rs914489098 712 dbSNP
rs1469503455 718 dbSNP
rs1174360193 719 dbSNP
rs1347364660 725 dbSNP
rs145828054 732 dbSNP
rs1288862751 737 dbSNP
rs1339093731 740 dbSNP
rs1397521960 744 dbSNP
rs1390204646 752 dbSNP
rs553246084 778 dbSNP
rs79912656 785 dbSNP
rs987542143 786 dbSNP
rs190585401 803 dbSNP
rs919226968 805 dbSNP
rs1216406897 806 dbSNP
rs1161231426 810 dbSNP
rs756500363 827 dbSNP
rs1285138787 828 dbSNP
rs1457077484 832 dbSNP
rs750861344 835 dbSNP
rs763818847 838 dbSNP
rs1224753716 844 dbSNP
rs963928703 845 dbSNP
rs975835995 856 dbSNP
rs1477809334 858 dbSNP
rs1016459723 869 dbSNP
rs1013161167 876 dbSNP
rs966170049 882 dbSNP
rs1014707252 885 dbSNP
rs958845108 889 dbSNP
rs1158849514 890 dbSNP
rs143434275 896 dbSNP
rs951694195 899 dbSNP
rs1304394691 900 dbSNP
rs369683301 911 dbSNP
rs1027871598 917 dbSNP
rs1012515338 922 dbSNP
rs1375082179 925 dbSNP
rs1224078229 931 dbSNP
rs1308290418 936 dbSNP
rs561298028 943 dbSNP
rs1003006369 947 dbSNP
rs1057016046 949 dbSNP
rs902936335 952 dbSNP
rs1292571598 955 dbSNP
rs758081446 975 dbSNP
rs1041743113 981 dbSNP
rs1199883755 992 dbSNP
rs568861498 993 dbSNP
rs566205781 1002 dbSNP
rs1234758037 1004 dbSNP
rs1481093130 1010 dbSNP
rs892833133 1012 dbSNP
rs902587016 1013 dbSNP
rs1178366755 1015 dbSNP
rs1039626716 1019 dbSNP
rs1446955908 1023 dbSNP
rs1351634400 1026 dbSNP
rs942624777 1028 dbSNP
rs1413885605 1034 dbSNP
rs1404178196 1041 dbSNP
rs1321028497 1044 dbSNP
rs946681607 1046 dbSNP
rs1262635624 1048 dbSNP
rs912373364 1051 dbSNP
rs764742265 1053 dbSNP
rs56325022 1056 dbSNP
rs976309575 1062 dbSNP
rs1226626781 1070 dbSNP
rs1275240735 1073 dbSNP
rs965941566 1074 dbSNP
rs907575691 1076 dbSNP
rs566504065 1079 dbSNP
rs1236721197 1081 dbSNP
rs919354842 1086 dbSNP
rs776625139 1089 dbSNP
rs1184600674 1090 dbSNP
rs1237357447 1091 dbSNP
rs1472110323 1094 dbSNP
rs1160910534 1102 dbSNP
rs751263054 1115 dbSNP
rs1421077368 1117 dbSNP
rs1465798956 1120 dbSNP
rs942038835 1125 dbSNP
rs951661929 1129 dbSNP
rs546901291 1132 dbSNP
rs909240232 1141 dbSNP
rs1027341671 1146 dbSNP
rs1339760057 1152 dbSNP
rs1445780867 1154 dbSNP
rs533281295 1171 dbSNP
rs1385940891 1173 dbSNP
rs1011942916 1177 dbSNP
rs1385212175 1177 dbSNP
rs959876000 1178 dbSNP
rs1035312245 1183 dbSNP
rs1204657332 1188 dbSNP
rs1159812969 1190 dbSNP
rs958960094 1191 dbSNP
rs1035782632 1192 dbSNP
rs1455121859 1214 dbSNP
rs1411185434 1215 dbSNP
rs1243341307 1220 dbSNP
rs1477824124 1225 dbSNP
rs1192313811 1227 dbSNP
rs147988823 1229 dbSNP
rs60439416 1231 dbSNP
rs967984833 1234 dbSNP
rs564281335 1238 dbSNP
rs186494893 1240 dbSNP
rs902684208 1252 dbSNP
rs1042418519 1260 dbSNP
rs1481362120 1262 dbSNP
rs768490434 1265 dbSNP
rs893787550 1266 dbSNP
rs1399421528 1267 dbSNP
rs1049701384 1273 dbSNP
rs530996740 1276 dbSNP
rs1347574885 1281 dbSNP
rs143437851 1288 dbSNP
rs76669894 1290 dbSNP
rs572879293 1291 dbSNP
rs35188698 1305 dbSNP
rs891048807 1308 dbSNP
rs944503146 1318 dbSNP
rs1215207242 1325 dbSNP
rs1263808902 1326 dbSNP
rs1225932541 1332 dbSNP
rs1322034972 1333 dbSNP
rs1260459774 1338 dbSNP
rs1050880216 1352 dbSNP
rs1199196768 1357 dbSNP
rs546051493 1358 dbSNP
rs929816289 1361 dbSNP
rs1160101662 1364 dbSNP
rs897016901 1370 dbSNP
rs1380790575 1380 dbSNP
rs1419057720 1383 dbSNP
rs1228543686 1390 dbSNP
rs10791841 1391 dbSNP
rs1387554382 1398 dbSNP
rs930361270 1401 dbSNP
rs1329576414 1409 dbSNP
rs1432285735 1411 dbSNP
rs1387333851 1415 dbSNP
rs1310486434 1422 dbSNP
rs942138483 1428 dbSNP
rs1238669378 1436 dbSNP
rs1283241247 1437 dbSNP
rs1336775402 1437 dbSNP
rs12290369 1454 dbSNP
rs1209922086 1462 dbSNP
rs1422957080 1467 dbSNP
rs1171794060 1478 dbSNP
rs1183674853 1484 dbSNP
rs1475579938 1487 dbSNP
rs2577 1505 dbSNP
rs991466475 1510 dbSNP
rs2576 1511 dbSNP
rs1156840101 1514 dbSNP
rs530486867 1527 dbSNP
rs1387159034 1545 dbSNP
rs1458422884 1549 dbSNP
rs928884105 1550 dbSNP
rs1035643487 1551 dbSNP
rs575016932 1553 dbSNP
rs774569992 1558 dbSNP
rs1332432533 1560 dbSNP
rs1376696851 1568 dbSNP
rs115605477 1575 dbSNP
rs1322871066 1581 dbSNP
rs967554433 1586 dbSNP
rs1288262992 1592 dbSNP
rs1264387449 1595 dbSNP
rs1278459101 1596 dbSNP
rs1020903998 1607 dbSNP
rs181835446 1608 dbSNP
rs780582627 1609 dbSNP
rs72932674 1610 dbSNP
rs1017916094 1614 dbSNP
rs1186890097 1622 dbSNP
rs1011055536 1623 dbSNP
rs1364004635 1625 dbSNP
rs1171735080 1627 dbSNP
rs144781931 1628 dbSNP
rs1339136185 1655 dbSNP
rs1380481041 1660 dbSNP
rs1396003645 1665 dbSNP
rs1028400329 1671 dbSNP
rs1338251955 1672 dbSNP
rs1454061989 1678 dbSNP
rs1006568268 1679 dbSNP
rs1357361610 1690 dbSNP
rs997253945 1703 dbSNP
rs1258230922 1714 dbSNP
rs1333376066 1717 dbSNP
rs901179907 1722 dbSNP
rs539676001 1740 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000312006.4 | 3UTR | UUUUCUUUUUUUUAAUAAAAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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