pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ATP2B1   
Synonyms PMCA1, PMCA1kb
Description ATPase plasma membrane Ca2+ transporting 1
Transcript NM_001001323   
Other Transcripts NM_001682   
Expression
Putative miRNA Targets on ATP2B1
3'UTR of ATP2B1
(miRNA target sites are highlighted)
>ATP2B1|NM_001001323|3'UTR
   1 TTCTTTATATGAAGGGTTAGAAAAACCGGAATCAAGAAGTTCGATTCACAACTTTATGACACATCCTGAGTTTAGGATAG
  81 AAGATTCAGAGCCTCATATCCCCCTTATTGATGACACTGATGCCGAAGATGATGCTCCTACAAAACGTAACTCCAGTCCT
 161 CCACCCTCTCCCAACAAAAATAACAATGCTGTTGACAGTGGAATTCACCTTACAATAGAAATGAACAAGTCTGCTACCTC
 241 TTCATCCCCAGGAAGCCCACTACATAGTTTGGAAACATCACTCTGATTGTAAGCTGAATGTTAACACACTAGCTGCATTG
 321 TAAAGAAACAAATTGAAACTGGGTCTTTTCACATATTGTGATGGACAAGCTAGTATTCTTGTCTTTGGACTTCAACAGAA
 401 GACACACTTGTACGAATGTAGATTTATTTTTTTAAAAAAAAAAAAGCAAAGCTTTCTGCCAGACTGAGGGTGCTTTTTGG
 481 GGGGTGGGAGAAATGAACTGACAGATAAACAGTAACTCAGCGTAAGTGACCTGTGGATCATCAGTAGTACCCAAGCATGG
 561 TCCTGAACAGTGTATTAGCAGAGCTTTAGTTTATCTCAGTCCTGGATGGGAGAGAGAGGGAGGAGTAAAACTGGGCAAGA
 641 CAAAGAGCCCTGGATCGTTGAATTGATAGTTTAATTTCTGCTGTTGGCTGTTAATAATTTGGATTATTTATGTTTATAAA
 721 TGATACAGATCTGTTTACAAGGTTTGTAGATACTTTTTTTGTTCCTGTTCATAGATGGGAAGCTTCCTTATAACTGATGC
 801 AGAGAAAAATTAGTCCTTCAAATACTGCTGTATTTTCAGGAAAAAAAAAAAAAGGGGTGTTTCTATTGAAACTGTACTAA
 881 ATTTTTGCCTACAATTTACCTTGTTAAATATTGTAGATAAATTGCTAATACTAATAGCCAAATAGATAACACTAATGCTT
 961 TGTTTAAAAAAACGAAAAAAACAAAACAAAACAAAAAAACATGAGCAGTGGTGTTCTAATGAAGTTATGACATCTGTCCT
1041 AATTAGTTTCTTAAATACATTTACTACTTAATGGTTTTGAAGCAACTGTTTAATTTTTAAAATTTTTGAAAACTTGCTAA
1121 TAACCTTTTGTTCAGAATTTAGTAGATTGTTTAATGCAGGACATCAACTACATAATGAAAGATGCTTGAAATGCTTTTGT
1201 TATTTCAGGCAAATCAAATTAAATCAGACTATCAAACTACAAGAGAACCTTAGTCTTTTTTGTTTTTGTCTAAACATGTT
1281 AGTTTAGTGATGTCTTGGTGAACTGTGAGTGAACTGTATTGATTTTTCTAATCTTTAGAGACCTTCACACAGCATGAGGG
1361 CTGTTGGCATTTTGAAAAAGGTTAATAAGTAGAAGCATACATGTTTTCCTTTTGTTTTTGAAACTTGTTTGTAAACATAA
1441 ATAAATATGCCCTTTTATTAAATAAATTCATGGCAATGTTTTTTTAAAAGACATTTCAGCTTCTTTACTCAGTTCTGCAT
1521 ATACAGTGCATCAGTCTGTTCTCTTTGACCACAATTGGAATACATTTCAAGATGGTAACAGCCCCATGAAGTACCGCTTT
1601 AATTCCTTGCTGGTAATCTAATAGAATCAGATTAAGAAAATTAACACAATTTTACCATTTGACATACTCTTCATTGAATT
1681 TAGTTTGTCTAAAATAGTCTCACAGGTAAAAAACATAACAACAATGACCACCATTGTCTTTGATACATTTATTTTAATTC
1761 TTAAGTGGCCAAATAACAGATTAGGTAAAATGAGATTACATGAAAAGGTTCTAAAATGATATATTTAGATGCAATAATTA
1841 ACCATATGCTAGAATGCCCACCTCTAAGCCAATTGGATTCTTTAGCTCTCTTTTTCTTTCCTTCATCTACCTTCTTCTCT
1921 TTTTTGCCTCTGTCTTTACCCTTTAGAAACTGGCATGTGTTAGGGCCCAGATTTCACCAGATACACAATCCTCAGGCTGA
2001 CATAAAGTTTACGAGGACTGCTACTATAACTGAGAGTGCTGACCAAGCAAAGAAACATTTAGTTGATGGTGCTTGATATT
2081 TTTGGTGGGTGGGGGAAATCTTTTTCTCACCATCAAATCTTTGCAGTAATCCTCTGCAGGTCTTAGAAACACATTGGCTC
2161 TGTCAGCATTTGTAATTGTACATTTATTCATCAGGTATTTATAGTGAATCATACTGTAAAAAAGAGGTAGCATGATATGC
2241 TGGAAAGCATATTAGACTAGGAGTCAAGACCTGGTTTCTAGTCTTGGTTTTGCCATTAATGTGCTGCATGATCTTGGGAA
2321 AATCATTTACCCTAAATAAGGGTGGTGGACTATCTTGAAGAACCCTTTCAACTCTAAAAATTGACCCTATCAACTGGAGA
2401 GCCCACAAGGCATAGGGAATAGAGAAAAGGGAAATGTTTTCAGTTTTCTTTTTTATTTTGGTTATGCTTAAATATGAATG
2481 TAATTACCAAAAGATTTAGAAGTGCATGTGCTTTGGAGGATTTGTATTGAGCTTTTACAGTATTCATTTTTCAACTCAAG
2561 GCAATGGCTTTCTACACCAACTCTAATCCATAAACGGGTCTTATGACATCTATGAAGTAGTAGCAAGACATGCTTAGTGT
2641 GTATTTCTCTCTTTGAGACACTGTAATTTCTACCAGAAATTTCCAGAGCATTATGTAGGTAGAAAAAAATGCAAGCAAGC
2721 TGTTAAAGATCTTGGATCCCATTATATAGTATGTATAGCTGAAATCTGTAATTCAATCACTTTTTCTCTTTTATCCTCTA
2801 ACCAAAAAATTGTTTAATTTTGCATCCCAAATGTTTTTAATCTTTGTATATTTTTTAAAAATCCTTTTCTCCTCATCATT
2881 GCCTTTTTTGTGGTTGTAAATAGACTTACTTGCACTTTGAAGATGAGTTACTCCTTGTCATCTTACAAATATGTGATATG
2961 GTAATTTTCATAACAGATGTCAGTTTTGAACCAAGAATTGGTGATTTGTTTATAAGAAAAAAACTGGCTTCATTTCTGTG
3041 AAATTGCTCTTTGAAAATTTCTTTTTACACGTGTAAGCCAACTGAGATACCGTGATGGTGTTGATTTCTTTCAATGATGC
3121 TTACCATCTATTTTAGCCACTGAGCCTTTTATTATTTGTCTATTTGTAAAGTTTATTTGTCTTAACTCATTTAATAAATA
3201 TACTGTTTATCTGTTTCTGAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aggaCCUACGUUUAAAau 5'
              | |||:|:||||  
Target 5' gtacGAATGTAGATTTat 3'
410 - 427 122.00 -5.40
2
miRNA  3' agGACCUACGUUUAAAAu 5'
            ||   ||:||| ||| 
Target 5' gtCTATTTGTAAAGTTTa 3'
3158 - 3175 120.00 -5.10
3
miRNA  3' aggACCUA---CGUUUAAAAu 5'
             |||:|   | |||| || 
Target 5' tggTGGGTGGGGGAAATCTTt 3'
2083 - 2103 119.00 -6.65
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
784251 43 ClinVar
COSM6505314 15 COSMIC
COSM5722022 16 COSMIC
COSM4777429 29 COSMIC
COSM3466281 36 COSMIC
COSM274090 42 COSMIC
COSM8768514 44 COSMIC
COSM8840175 64 COSMIC
COSM944300 86 COSMIC
COSM8000736 100 COSMIC
COSM4489481 104 COSMIC
COSM944299 124 COSMIC
COSM6607580 125 COSMIC
COSM341696 158 COSMIC
COSM9325934 159 COSMIC
COSM5901769 170 COSMIC
COSM1995141 199 COSMIC
COSM7880791 201 COSMIC
COSM1323023 203 COSMIC
COSM3813166 207 COSMIC
COSM5788975 209 COSMIC
COSM6041588 233 COSMIC
COSM6863118 265 COSMIC
COSM4399475 283 COSMIC
COSN13423618 301 COSMIC
COSN13423605 413 COSMIC
COSN13423603 433 COSMIC
COSN29237637 433 COSMIC
COSN1153467 434 COSMIC
COSN18736676 434 COSMIC
COSN31528476 512 COSMIC
COSN21938565 728 COSMIC
COSN27020025 800 COSMIC
COSN20109935 841 COSMIC
COSN7386490 852 COSMIC
COSN30161317 916 COSMIC
COSN30158050 952 COSMIC
COSN31602960 974 COSMIC
COSN31484866 1215 COSMIC
COSN31484874 1333 COSMIC
COSN21053635 1828 COSMIC
COSN20092620 1834 COSMIC
COSN28753364 1905 COSMIC
COSN31544156 2012 COSMIC
COSN31519032 2092 COSMIC
COSN31480970 2234 COSMIC
COSN31576901 2252 COSMIC
COSN30539752 2324 COSMIC
COSN31531417 2442 COSMIC
COSN30540795 2615 COSMIC
COSN31485733 2647 COSMIC
COSN17076518 2679 COSMIC
COSN21292824 2744 COSMIC
COSN31547679 2766 COSMIC
COSN30174507 2970 COSMIC
COSN31520560 3061 COSMIC
COSN30025292 3101 COSMIC
COSN31549297 3203 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs750107374 7 dbSNP
rs922455554 11 dbSNP
rs1193655088 19 dbSNP
rs1448450923 22 dbSNP
rs764946874 27 dbSNP
rs369985301 28 dbSNP
rs1348461756 34 dbSNP
rs753652453 39 dbSNP
rs61736878 43 dbSNP
rs760644092 51 dbSNP
rs1343870393 55 dbSNP
rs1270345905 56 dbSNP
rs775232867 59 dbSNP
rs1342838731 61 dbSNP
rs1296715330 64 dbSNP
rs766483886 65 dbSNP
rs762977872 67 dbSNP
rs751758239 73 dbSNP
rs769982978 75 dbSNP
rs762207543 77 dbSNP
rs375435006 78 dbSNP
rs777051043 81 dbSNP
rs1474229555 91 dbSNP
rs1167399411 94 dbSNP
rs1168782733 95 dbSNP
rs769105123 96 dbSNP
rs373795130 97 dbSNP
rs1430921894 100 dbSNP
rs1192612429 101 dbSNP
rs1187281735 108 dbSNP
rs945772727 121 dbSNP
rs369043635 123 dbSNP
rs771742877 124 dbSNP
rs745346247 125 dbSNP
rs778746156 129 dbSNP
rs756961753 131 dbSNP
rs753630481 135 dbSNP
rs145954787 139 dbSNP
rs1276734987 140 dbSNP
rs1218353534 142 dbSNP
rs755798585 146 dbSNP
rs752708878 147 dbSNP
rs767392262 152 dbSNP
rs763071645 153 dbSNP
rs200151950 154 dbSNP
rs1329583707 162 dbSNP
rs1006793896 164 dbSNP
rs142404163 165 dbSNP
rs765510384 166 dbSNP
rs542927109 168 dbSNP
rs768025980 181 dbSNP
rs567298131 194 dbSNP
rs769073869 195 dbSNP
rs1804194 198 dbSNP
rs1355562266 199 dbSNP
rs760909886 207 dbSNP
rs1232996052 209 dbSNP
rs1205959647 211 dbSNP
rs766556813 213 dbSNP
rs115449702 215 dbSNP
rs547400437 217 dbSNP
rs533915498 219 dbSNP
rs1315261008 221 dbSNP
rs778548106 223 dbSNP
rs1379026306 225 dbSNP
rs1280230470 227 dbSNP
rs1187586517 233 dbSNP
rs770504242 234 dbSNP
rs575636800 236 dbSNP
rs763192699 241 dbSNP
rs748973397 245 dbSNP
rs1340316854 246 dbSNP
rs777250567 248 dbSNP
rs755957995 249 dbSNP
rs375770738 252 dbSNP
rs1270609447 260 dbSNP
rs781149320 261 dbSNP
rs754907837 264 dbSNP
rs1437209295 265 dbSNP
rs1237030912 270 dbSNP
rs1193941893 278 dbSNP
rs933995617 279 dbSNP
rs750559957 280 dbSNP
rs918582704 283 dbSNP
rs761736147 288 dbSNP
rs1321656694 289 dbSNP
rs773115766 307 dbSNP
rs191454131 308 dbSNP
rs1457857537 309 dbSNP
rs1374837999 314 dbSNP
rs551140844 317 dbSNP
rs775990335 331 dbSNP
rs768192439 333 dbSNP
rs962753584 343 dbSNP
rs531539802 352 dbSNP
rs1393421599 355 dbSNP
rs1433139408 356 dbSNP
rs1316668442 360 dbSNP
rs1305216095 373 dbSNP
rs931453054 375 dbSNP
rs897198104 384 dbSNP
rs1037216277 387 dbSNP
rs368755572 397 dbSNP
rs1214013740 398 dbSNP
rs1321035465 399 dbSNP
rs1397995195 403 dbSNP
rs1266954641 405 dbSNP
rs909072014 413 dbSNP
rs879404210 433 dbSNP
rs562508539 434 dbSNP
rs928789187 434 dbSNP
rs948968233 435 dbSNP
rs1312361371 437 dbSNP
rs78076751 445 dbSNP
rs371640664 446 dbSNP
rs957818392 446 dbSNP
rs989514046 446 dbSNP
rs1031137246 447 dbSNP
rs977935555 449 dbSNP
rs965230330 459 dbSNP
rs769927537 462 dbSNP
rs1362396641 463 dbSNP
rs1459073134 467 dbSNP
rs1301161033 470 dbSNP
rs971086069 479 dbSNP
rs186661759 480 dbSNP
rs1026995530 484 dbSNP
rs1010013944 495 dbSNP
rs1207672508 507 dbSNP
rs1254875862 518 dbSNP
rs995886625 520 dbSNP
rs1166543851 521 dbSNP
rs892910160 522 dbSNP
rs1471902338 524 dbSNP
rs1181893941 529 dbSNP
rs1054584074 542 dbSNP
rs1473676784 543 dbSNP
rs541026380 546 dbSNP
rs1424041626 548 dbSNP
rs1037547186 564 dbSNP
rs143710306 568 dbSNP
rs889912756 570 dbSNP
rs1466582254 574 dbSNP
rs1304664982 600 dbSNP
rs1368568815 606 dbSNP
rs1051388369 611 dbSNP
rs1288748294 612 dbSNP
rs1352143636 614 dbSNP
rs1044541533 615 dbSNP
rs1300113774 617 dbSNP
rs1488972472 619 dbSNP
rs1234705823 622 dbSNP
rs148868798 626 dbSNP
rs918615092 642 dbSNP
rs1205123416 645 dbSNP
rs914773055 649 dbSNP
rs1053468923 657 dbSNP
rs1189875360 660 dbSNP
rs1424644184 661 dbSNP
rs1036974005 669 dbSNP
rs1259352668 678 dbSNP
rs114701386 680 dbSNP
rs1388476360 690 dbSNP
rs182144764 701 dbSNP
rs1428995688 706 dbSNP
rs866234045 710 dbSNP
rs199802801 712 dbSNP
rs909977361 716 dbSNP
rs991274672 720 dbSNP
rs1292854594 725 dbSNP
rs1231579178 733 dbSNP
rs181112736 740 dbSNP
rs1367848369 761 dbSNP
rs1804195 763 dbSNP
rs1298803587 764 dbSNP
rs1381565750 765 dbSNP
rs1382620597 767 dbSNP
rs1295073679 771 dbSNP
rs912438844 779 dbSNP
rs556457454 787 dbSNP
rs1219750706 789 dbSNP
rs1246550797 791 dbSNP
rs1488929406 793 dbSNP
rs1195782179 809 dbSNP
rs1246243517 816 dbSNP
rs1448893332 822 dbSNP
rs536979147 827 dbSNP
rs1421496588 830 dbSNP
rs1162309291 836 dbSNP
rs1478555906 837 dbSNP
rs1163797333 839 dbSNP
rs1397035482 840 dbSNP
rs1027295117 841 dbSNP
rs995418436 852 dbSNP
rs189510463 853 dbSNP
rs1227176454 854 dbSNP
rs1299193305 854 dbSNP
rs1435109041 854 dbSNP
rs1491367208 854 dbSNP
rs759096688 854 dbSNP
rs77159805 854 dbSNP
rs1491196117 855 dbSNP
rs1266394376 859 dbSNP
rs568123770 859 dbSNP
rs1464623129 869 dbSNP
rs780600127 876 dbSNP
rs1002955141 877 dbSNP
rs1471751415 889 dbSNP
rs765762740 894 dbSNP
rs1469166987 930 dbSNP
rs1462781733 943 dbSNP
rs1044552799 950 dbSNP
rs1013008252 973 dbSNP
rs1457496799 973 dbSNP
rs893404466 973 dbSNP
rs1272827479 974 dbSNP
rs1446438037 974 dbSNP
rs1055137094 978 dbSNP
rs1235459363 982 dbSNP
rs1286905483 982 dbSNP
rs1380572425 982 dbSNP
rs1212048603 983 dbSNP
rs971286705 991 dbSNP
rs1320164381 997 dbSNP
rs1270857382 998 dbSNP
rs1209544979 1000 dbSNP
rs1440722336 1000 dbSNP
rs934915797 1000 dbSNP
rs1226693695 1001 dbSNP
rs188331243 1007 dbSNP
rs1009919459 1009 dbSNP
rs956992129 1011 dbSNP
rs1472698283 1014 dbSNP
rs869309686 1023 dbSNP
rs943771175 1024 dbSNP
rs1393453516 1032 dbSNP
rs912287845 1043 dbSNP
rs1323549762 1046 dbSNP
rs771804306 1052 dbSNP
rs1376574980 1057 dbSNP
rs954037294 1058 dbSNP
rs919757210 1059 dbSNP
rs1466876776 1067 dbSNP
rs1281449828 1084 dbSNP
rs869048491 1096 dbSNP
rs869061067 1103 dbSNP
rs1007048705 1108 dbSNP
rs1400492291 1113 dbSNP
rs1279494896 1116 dbSNP
rs1486609708 1123 dbSNP
rs1202987151 1124 dbSNP
rs1250775661 1130 dbSNP
rs1483233732 1130 dbSNP
rs1183767166 1131 dbSNP
rs889992679 1133 dbSNP
rs974433551 1142 dbSNP
rs745549634 1144 dbSNP
rs1459985035 1147 dbSNP
rs1015552427 1148 dbSNP
rs183753564 1152 dbSNP
rs897428633 1154 dbSNP
rs1201600254 1164 dbSNP
rs1037212729 1168 dbSNP
rs971465473 1170 dbSNP
rs538876125 1176 dbSNP
rs1331307042 1185 dbSNP
rs941369834 1188 dbSNP
rs1012981568 1197 dbSNP
rs147827425 1199 dbSNP
rs1459261282 1200 dbSNP
rs1273926096 1206 dbSNP
rs1273781072 1210 dbSNP
rs1342796022 1214 dbSNP
rs577775232 1241 dbSNP
rs1197318148 1255 dbSNP
rs1195322838 1257 dbSNP
rs1337505623 1262 dbSNP
rs1257757628 1270 dbSNP
rs1450651670 1283 dbSNP
rs1234916621 1284 dbSNP
rs1370087593 1285 dbSNP
rs1296373304 1293 dbSNP
rs762169278 1297 dbSNP
rs182085535 1298 dbSNP
rs537514187 1303 dbSNP
rs1448673415 1313 dbSNP
rs1462997797 1317 dbSNP
rs938082293 1318 dbSNP
rs1389077172 1319 dbSNP
rs1336008804 1336 dbSNP
rs1326774233 1341 dbSNP
rs1327744488 1344 dbSNP
rs1389214595 1345 dbSNP
rs1432911253 1350 dbSNP
rs1296987835 1358 dbSNP
rs1403710472 1369 dbSNP
rs1229567221 1376 dbSNP
rs927172774 1386 dbSNP
rs981292396 1391 dbSNP
rs1174884557 1400 dbSNP
rs1263431254 1401 dbSNP
rs1355315681 1404 dbSNP
rs1210243835 1414 dbSNP
rs1274585867 1417 dbSNP
rs1463279067 1421 dbSNP
rs144498091 1425 dbSNP
rs1187374538 1427 dbSNP
rs949836722 1428 dbSNP
rs769621257 1440 dbSNP
rs1042082931 1448 dbSNP
rs903394784 1448 dbSNP
rs913159002 1449 dbSNP
rs1166114354 1451 dbSNP
rs1396895103 1461 dbSNP
rs988686776 1462 dbSNP
rs957099678 1465 dbSNP
rs1319930954 1468 dbSNP
rs890778741 1469 dbSNP
rs1049535150 1476 dbSNP
rs1033081401 1479 dbSNP
rs1441876196 1479 dbSNP
rs1339807096 1485 dbSNP
rs932411891 1486 dbSNP
rs1294962201 1490 dbSNP
rs985253388 1490 dbSNP
rs953909098 1492 dbSNP
rs1233715512 1496 dbSNP
rs1260781695 1498 dbSNP
rs1486534079 1501 dbSNP
rs973895014 1511 dbSNP
rs1029388464 1516 dbSNP
rs1254611442 1519 dbSNP
rs1436210703 1524 dbSNP
rs1189082831 1526 dbSNP
rs998318456 1527 dbSNP
rs1471718388 1533 dbSNP
rs548760600 1534 dbSNP
rs897291669 1542 dbSNP
rs1015840386 1554 dbSNP
rs1347103697 1555 dbSNP
rs1301180504 1558 dbSNP
rs1401392350 1571 dbSNP
rs1005752765 1575 dbSNP
rs1242121309 1584 dbSNP
rs1314455364 1585 dbSNP
rs971391875 1595 dbSNP
rs529199758 1596 dbSNP
rs1278655323 1609 dbSNP
rs1055517754 1610 dbSNP
rs1230368233 1617 dbSNP
rs957473758 1649 dbSNP
rs1485611203 1651 dbSNP
rs1212283794 1661 dbSNP
rs189382715 1664 dbSNP
rs1482254169 1672 dbSNP
rs1312958788 1679 dbSNP
rs906624319 1682 dbSNP
rs760288696 1685 dbSNP
rs998999258 1687 dbSNP
rs949866013 1694 dbSNP
rs1174037392 1695 dbSNP
rs1377180131 1697 dbSNP
rs1435237593 1702 dbSNP
rs913067106 1707 dbSNP
rs903456135 1709 dbSNP
rs1019232373 1714 dbSNP
rs988760809 1716 dbSNP
rs1311569457 1719 dbSNP
rs935902011 1721 dbSNP
rs1172185192 1722 dbSNP
rs1408924855 1724 dbSNP
rs1402847944 1725 dbSNP
rs1409158747 1727 dbSNP
rs184669349 1732 dbSNP
rs925662482 1733 dbSNP
rs199725396 1737 dbSNP
rs1299957460 1746 dbSNP
rs1468803440 1754 dbSNP
rs368365294 1763 dbSNP
rs547071716 1765 dbSNP
rs193169766 1780 dbSNP
rs1485374938 1782 dbSNP
rs961560353 1783 dbSNP
rs1255374248 1785 dbSNP
rs188263725 1797 dbSNP
rs1454735075 1800 dbSNP
rs531694153 1822 dbSNP
rs1195587718 1828 dbSNP
rs1005825513 1834 dbSNP
rs1283307559 1835 dbSNP
rs1170877963 1843 dbSNP
rs1356108211 1846 dbSNP
rs1456216438 1847 dbSNP
rs563113412 1850 dbSNP
rs142302847 1871 dbSNP
rs1033908005 1872 dbSNP
rs574236056 1873 dbSNP
rs1294839956 1887 dbSNP
rs939844403 1890 dbSNP
rs1002624734 1892 dbSNP
rs1214541622 1892 dbSNP
rs1358062807 1893 dbSNP
rs1309582470 1898 dbSNP
rs184891660 1899 dbSNP
rs1293475698 1900 dbSNP
rs75724051 1905 dbSNP
rs1352988541 1909 dbSNP
rs577586567 1914 dbSNP
rs1261881051 1919 dbSNP
rs1186980974 1926 dbSNP
rs1292043368 1926 dbSNP
rs1433519383 1927 dbSNP
rs1346241652 1928 dbSNP
rs1421602018 1929 dbSNP
rs1318112112 1930 dbSNP
rs1399273119 1932 dbSNP
rs1421761274 1932 dbSNP
rs1397024785 1934 dbSNP
rs192554541 1937 dbSNP
rs949961728 1941 dbSNP
rs867411406 1944 dbSNP
rs945436125 1964 dbSNP
rs891662592 1967 dbSNP
rs1052919112 1970 dbSNP
rs926029777 1975 dbSNP
rs1226908211 1988 dbSNP
rs1415746999 2002 dbSNP
rs1335726645 2007 dbSNP
rs935823985 2012 dbSNP
rs925873406 2013 dbSNP
rs1475701759 2017 dbSNP
rs977891070 2018 dbSNP
rs1241406416 2019 dbSNP
rs1049628589 2026 dbSNP
rs1243715973 2028 dbSNP
rs932349616 2043 dbSNP
rs1186952457 2044 dbSNP
rs767320695 2052 dbSNP
rs763100965 2055 dbSNP
rs922266725 2063 dbSNP
rs548214852 2065 dbSNP
rs1475971076 2068 dbSNP
rs773956750 2070 dbSNP
rs1156442472 2077 dbSNP
rs976501909 2088 dbSNP
rs961094333 2091 dbSNP
rs1400718338 2096 dbSNP
rs1319734984 2097 dbSNP
rs1019117041 2098 dbSNP
rs1009193618 2102 dbSNP
rs1453094035 2108 dbSNP
rs908276592 2116 dbSNP
rs537986986 2133 dbSNP
rs984709708 2137 dbSNP
rs1212677009 2147 dbSNP
rs1286609060 2153 dbSNP
rs1028415902 2157 dbSNP
rs996499808 2160 dbSNP
rs952877920 2178 dbSNP
rs1310364599 2197 dbSNP
rs1258154390 2200 dbSNP
rs1486491767 2203 dbSNP
rs898259729 2205 dbSNP
rs1470335364 2207 dbSNP
rs1159760345 2212 dbSNP
rs748501716 2214 dbSNP
rs750659973 2215 dbSNP
rs1038144675 2219 dbSNP
rs568857405 2223 dbSNP
rs1003902790 2224 dbSNP
rs1332138314 2224 dbSNP
rs1416959236 2225 dbSNP
rs1327330869 2226 dbSNP
rs1335368654 2227 dbSNP
rs781606657 2243 dbSNP
rs1214604316 2245 dbSNP
rs1363294462 2248 dbSNP
rs868762341 2255 dbSNP
rs1045538193 2261 dbSNP
rs949971862 2262 dbSNP
rs915794856 2270 dbSNP
rs1349989376 2271 dbSNP
rs1024967049 2273 dbSNP
rs1009675998 2279 dbSNP
rs936039974 2294 dbSNP
rs536527690 2295 dbSNP
rs977568275 2305 dbSNP
rs967454243 2310 dbSNP
rs147561508 2313 dbSNP
rs569260037 2321 dbSNP
rs904355048 2336 dbSNP
rs1166514250 2341 dbSNP
rs1029225226 2349 dbSNP
rs1050143523 2352 dbSNP
rs932575086 2353 dbSNP
rs995476744 2363 dbSNP
rs186789568 2364 dbSNP
rs1440201233 2366 dbSNP
rs1017001939 2372 dbSNP
rs1373051834 2374 dbSNP
rs1003956654 2382 dbSNP
rs1269360959 2393 dbSNP
rs1339757035 2401 dbSNP
rs546514746 2404 dbSNP
rs746596996 2409 dbSNP
rs1287247816 2424 dbSNP
rs1045548130 2448 dbSNP
rs1014014123 2453 dbSNP
rs1254410895 2455 dbSNP
rs1455956992 2460 dbSNP
rs1192702125 2461 dbSNP
rs1191593844 2462 dbSNP
rs533058071 2473 dbSNP
rs1475923068 2480 dbSNP
rs1170030478 2485 dbSNP
rs1040705555 2493 dbSNP
rs1055744493 2499 dbSNP
rs1259533656 2504 dbSNP
rs561721298 2506 dbSNP
rs1326982137 2510 dbSNP
rs1229315377 2523 dbSNP
rs1291256133 2528 dbSNP
rs926016583 2538 dbSNP
rs908308903 2554 dbSNP
rs1233587837 2588 dbSNP
rs1274680323 2589 dbSNP
rs983849193 2595 dbSNP
rs571648330 2596 dbSNP
rs946123083 2597 dbSNP
rs953030620 2599 dbSNP
rs1273000792 2603 dbSNP
rs370780260 2604 dbSNP
rs770761133 2609 dbSNP
rs911951892 2618 dbSNP
rs1165850029 2630 dbSNP
rs79224935 2636 dbSNP
rs932164149 2655 dbSNP
rs1158123001 2673 dbSNP
rs1385544946 2679 dbSNP
rs970950347 2682 dbSNP
rs776976693 2686 dbSNP
rs1354523616 2691 dbSNP
rs749181051 2692 dbSNP
rs531877745 2710 dbSNP
rs764660742 2714 dbSNP
rs1314787560 2719 dbSNP
rs1016601143 2725 dbSNP
rs982378023 2726 dbSNP
rs145069315 2733 dbSNP
rs182188093 2739 dbSNP
rs1219505062 2740 dbSNP
rs1319134415 2742 dbSNP
rs1189128917 2744 dbSNP
rs951147205 2746 dbSNP
rs1417604457 2749 dbSNP
rs1369082393 2751 dbSNP
rs1032880666 2753 dbSNP
rs1013946959 2755 dbSNP
rs1171611359 2766 dbSNP
rs894343418 2774 dbSNP
rs1435051189 2776 dbSNP
rs1314544404 2779 dbSNP
rs207473236 2780 dbSNP
rs1034595129 2781 dbSNP
rs1000120518 2786 dbSNP
rs368205120 2790 dbSNP
rs1307068846 2797 dbSNP
rs904406582 2808 dbSNP
rs1000951855 2810 dbSNP
rs1278758186 2810 dbSNP
rs1347813449 2812 dbSNP
rs1212010359 2816 dbSNP
rs1041754882 2827 dbSNP
rs1479774804 2845 dbSNP
rs904385521 2848 dbSNP
rs1436510629 2850 dbSNP
rs890445399 2856 dbSNP
rs1051875385 2869 dbSNP
rs1454687451 2871 dbSNP
rs529527096 2872 dbSNP
rs1461303267 2875 dbSNP
rs767033371 2875 dbSNP
rs973938372 2878 dbSNP
rs1398218214 2880 dbSNP
rs996611340 2881 dbSNP
rs1302114861 2882 dbSNP
rs1480056558 2890 dbSNP
rs942303820 2892 dbSNP
rs1230696847 2893 dbSNP
rs908090388 2905 dbSNP
rs982431833 2906 dbSNP
rs560640090 2913 dbSNP
rs1252060542 2915 dbSNP
rs1459298558 2920 dbSNP
rs901111937 2922 dbSNP
rs1040906783 2928 dbSNP
rs939693274 2931 dbSNP
rs1252527536 2934 dbSNP
rs1486960193 2949 dbSNP
rs1281611691 2952 dbSNP
rs951074384 2953 dbSNP
rs1417299044 2954 dbSNP
rs550755291 2959 dbSNP
rs1346132516 2964 dbSNP
rs1309509283 2970 dbSNP
rs540947852 2971 dbSNP
rs1459611752 2977 dbSNP
rs1324620593 2978 dbSNP
rs1394505571 2978 dbSNP
rs1372789212 2980 dbSNP
rs1295763307 2988 dbSNP
rs1360518820 2991 dbSNP
rs190989654 3003 dbSNP
rs1296790508 3008 dbSNP
rs1320264998 3022 dbSNP
rs1231749054 3024 dbSNP
rs992576732 3024 dbSNP
rs1468915750 3025 dbSNP
rs772571379 3026 dbSNP
rs1416643733 3044 dbSNP
rs532558288 3052 dbSNP
rs1376044068 3057 dbSNP
rs1240230930 3060 dbSNP
rs1312165063 3066 dbSNP
rs915170355 3070 dbSNP
rs1034195550 3071 dbSNP
rs557782456 3081 dbSNP
rs1159487835 3084 dbSNP
rs1474112309 3090 dbSNP
rs543868502 3091 dbSNP
rs988351372 3092 dbSNP
rs1462516274 3106 dbSNP
rs956727402 3108 dbSNP
rs1343917777 3113 dbSNP
rs187826578 3114 dbSNP
rs979950088 3125 dbSNP
rs1342704448 3135 dbSNP
rs953508852 3143 dbSNP
rs1029463976 3144 dbSNP
rs890492384 3145 dbSNP
rs1292857284 3151 dbSNP
rs1335752388 3158 dbSNP
rs745504181 3162 dbSNP
rs996643768 3171 dbSNP
rs1051761753 3179 dbSNP
rs1258878452 3182 dbSNP
rs1316259805 3184 dbSNP
rs201293852 3189 dbSNP
rs1216343703 3201 dbSNP
rs1265254629 3209 dbSNP
rs900974804 3210 dbSNP
rs900549314 3222 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000261173.2 | 3UTR | GAAUUUUUUCUACUUGAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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