pre-miRNA Information
pre-miRNA hsa-mir-4680   
Genomic Coordinates chr10: 110898090 - 110898155
Description Homo sapiens miR-4680 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4680-5p
Sequence 5| AGAACUCUUGCAGUCUUAGAUGU |27
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1274530692 2 dbSNP
rs780271274 5 dbSNP
rs1461423681 7 dbSNP
rs749729920 8 dbSNP
rs1252920446 10 dbSNP
rs201739274 11 dbSNP
rs774971106 19 dbSNP
rs748132091 22 dbSNP
rs773643180 22 dbSNP
rs1235425484 23 dbSNP
Putative Targets

Gene Information
Gene Symbol ZIK1   
Synonyms ZNF762
Description zinc finger protein interacting with K protein 1
Transcript NM_001010879   
Expression
Putative miRNA Targets on ZIK1
3'UTR of ZIK1
(miRNA target sites are highlighted)
>ZIK1|NM_001010879|3'UTR
   1 AGGCCTCATGAATGCAGCAAATGTGGAAGCGCCTTCAACTCAAGATCTATCATCATTTAGCTCCTGAAAGTCCACACTTA
  81 AGTAGAGCCTTAGACCTACAGGGAAAGTGCTGTCTCTGTAGTATTGTAGCAGTAGAGAGCCTTTGTGAGGGAGCCATCTG
 161 CCTGAAGTTGAACCTCATTCTTCCTTGTTTCTCTGGTAGAAACCATCTACCCTCTACCACCTTGCACAGTGGGCACTGGT
 241 CACTCCTATGTGCTAAGACAAGGCAGACATCTGTGTGTTCTCTTAAGTCTTTGGAGGAAATCTTGAGCAGTCTAAGCCTT
 321 TAGAGAAAATTCATTCTTTTTTCTGACTGATCACAGCATACGTGTGACCCAGTTTGGGTCAGGAGGGCCCAGCCTTGGTT
 401 CTGCTGGACACTTATGTGCAAGGATTCCCTTCATGTAAATTCTTGGTCTCACATGACACTTGGTCATTCTTCCAGCCTCC
 481 ATGTCACCACGTGGTGAATGGCTGCCTCACATTGCTCCAGTTTGTGCACTAATAAAAGCCTTATATTTGAATCTACCTGT
 561 AGTCTTGGGGTTCTGTTTACTGTGTGGGGTGGCTGGGAGACAGACTTCAACTCTATATGAAGGAATGGATGGCTTTTGTG
 641 GGCCTCTGCAGGAAAGTAAGATGACAGAGTAATTCTAATTCTGGTTTTGGTCATACTTGCTTTGCTACCTAAAATCTCCT
 721 AGGAAAAAATGCAAGGTTTTGGTTATTCTAATTTGTGGCCTGGATCCCTATTCTTTCTGTGAGACTAGAGGTCATCCTGA
 801 GGAGAGGCCAGCTGTTATGACAAGCATGTGTGCTTCAGGGAATAGGACAATTTTATTCCATTGTTTCCAGAGGATGTCAT
 881 ATGATGCCCAGTGCTGCTGAGAAGCTTTTCATGGGGTTCTATAAGGAGGCATGCCCTGATATCAAACATTCCATAGGCCG
 961 ATGTCACGCAGAAGACAACGCGAGTCACATGTGAACTGTAATTGGTACAGAAATACCTGGGTATTTCTGTACTGTGTGTA
1041 CTGTAGCAAACTAGTTGGAATGTGCCTCTTATAAAAGTACATTTACAAATCTTCCCGTGACTGTGGCTTTGAGCAGTCAT
1121 AGGACCTAGAAATCTGTGTATGTCCAATAGCTGAGGTTATTTTCAGCAAAAATAATTAAAGGGTTTTATTTTTTAATTCT
1201 TGTTGGTTTTCTAGGTTGTTCACCTCAAGTGCATTGCTGTAGAGGCAGAAAAAGGAGGATAAAGATAACAGAAGTCCTAT
1281 AGGCCAGGGATGTATTGATAGCTCTTGTGATTTCCACCAGTGTTGCTGTTGTCTCAAATTGCCACAGCCTTCATTGCTTG
1361 CCAACATTTCCTGCATGGAGGGACTCATGGTTGCCCTTCCCCAGGCCTGAAGAGAGAGTGCAGTCAACATGAGATTGCTA
1441 GGCATTCTGGTTTCTGAAAGTTGGGTGATCAGATACTTTATTGTGAAACATGTTTTACAAACTTTCTTGATGTGTAAGTG
1521 ACATGCCATAGTTTACATCCATTTATGGTGTATAATTTGAAGAGTTTGTCATACAAGCCTGTGAAACCATAATCATGATC
1601 ATGAACATATTCATGATTCACCTCTTGCTGTTTTACAATCTCTGCGTGTACTTTCCAGGCCTTCAGGAGTCCTGTCATTT
1681 ACTTTCCCTACAGGAGAATAGTTTGTGTTTTCTAGGATTTTATGTGAATTGAAACGTAAAATACTTACTCCATTTTTCCT
1761 GATGATGCACAATTTTTTTTTTTTTTTTGAGATGGAGTCTCAGTCTGTCACCAGGCTGGAGTGCAGTGGCATGATCTTGG
1841 CTCACTCCAACCTCCTCCTGGGTTCCAGCGATTCTCCTGCCTCAGCCTCCTGAGAAGCTAGGACTACAGGCATGCACTAC
1921 CACGCCCAACTAATTTTTGTATTTTTAGTAGAGATGTGGTTTTACCATGTTTGCCAGGATGGTCTTGATCTCTTGACCTC
2001 GTGATCCGCCCGCCTCAGCCTCCCGAAGTGCTGGGATTACAGGCGTAAGCCACCACACCAGCTGATGCACAATTACTTTT
2081 AAGATTTATCAATATTGCTTATGTGAATAGTTCATTTGTATTGCTGAGAAATAGTCTGTGGATATGTCACAATTTGGATA
2161 AACAGTTGGATGCTTTCCAGTTTTGGGCTGTTGCAAATAATGCTACTATGAACATAGGCATATAACTCTTAATATGCAGA
2241 AATGCTTTATTTCTCCTGTGTCAGTAGTACAGTGTACGTGAATGCGTCACTTTTAAAGACAAGGCCAGACTATAACCTAA
2321 CTGTACCATTTGCATTCTCATCAACAGTATGTGAACCTTCTTATTTCTCTACATTCTTGCCATACTTGGTATGGTTAGTC
2401 TTTTTAATTTTAGTTGTTTTAATAGCTGTATAATAGCATCTGTCTGTGATTTTATTGCATTTTTCTGGTATTTTATGGTA
2481 TTGAACATTTGAACATCTTGTATCTAGTTGCCACCTGTATATCCTCTTTGGAAGAATGTTTATTAATGTCTTTTGCTTAT
2561 TTTTAAATGGATGTTGGTGATACTTTTTCATTAATAAATAGACGTATAACAAAGA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugUAGAUUCUGACGUUCUCAAGa 5'
            :| ||  |:|  |||||||: 
Target 5' tgGTGTATAATTTGAAGAGTTTg 3'
1546 - 1568 141.00 -7.40
2
miRNA  3' uguAGAUUCUGACGUUCUCAAGa 5'
             | |:|||||   |||| || 
Target 5' ttcTGTGAGACT---AGAGGTCa 3'
775 - 794 129.00 -10.00
3
miRNA  3' ugUAGAUUCUGACG-------UUCUCAAGa 5'
            ||| || |:|||       || ||||| 
Target 5' ttATC-AATATTGCTTATGTGAATAGTTCa 3'
2086 - 2114 128.00 -5.52
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30158619 19 COSMIC
COSN31586549 32 COSMIC
COSN20065974 33 COSMIC
COSN30523344 37 COSMIC
COSN30157850 56 COSMIC
COSN16346973 58 COSMIC
COSN30502099 77 COSMIC
COSN30512277 79 COSMIC
COSN30493115 105 COSMIC
COSN31560157 111 COSMIC
COSN31568092 115 COSMIC
COSN31524778 122 COSMIC
COSN6148108 206 COSMIC
COSN8553165 374 COSMIC
COSN26688515 673 COSMIC
COSN16276042 958 COSMIC
COSN5439846 971 COSMIC
COSN4778806 1026 COSMIC
COSN4778807 1040 COSMIC
COSN16416502 1669 COSMIC
COSN32160505 1762 COSMIC
COSN19172749 1775 COSMIC
COSN18772899 1789 COSMIC
COSN23902828 1940 COSMIC
COSN24035896 1952 COSMIC
COSN20740442 2271 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs780497939 3 dbSNP
rs78120358 6 dbSNP
rs769275153 8 dbSNP
rs542378437 13 dbSNP
rs369789779 30 dbSNP
rs191905747 31 dbSNP
rs1406768649 32 dbSNP
rs765952395 34 dbSNP
rs760896505 38 dbSNP
rs764947824 40 dbSNP
rs752473972 42 dbSNP
rs981218644 43 dbSNP
rs1352939675 48 dbSNP
rs1408378347 49 dbSNP
rs762924399 50 dbSNP
rs1380122799 51 dbSNP
rs377243510 53 dbSNP
rs751869861 53 dbSNP
rs1222862520 57 dbSNP
rs934526736 68 dbSNP
rs1271260531 76 dbSNP
rs989999358 78 dbSNP
rs914438037 80 dbSNP
rs528309473 82 dbSNP
rs1425400088 86 dbSNP
rs551544088 90 dbSNP
rs943302195 92 dbSNP
rs564692572 96 dbSNP
rs1168899483 98 dbSNP
rs1390419078 101 dbSNP
rs955556565 104 dbSNP
rs1326040504 108 dbSNP
rs1168108055 113 dbSNP
rs1346231707 119 dbSNP
rs987087085 125 dbSNP
rs1039655998 129 dbSNP
rs751188528 147 dbSNP
rs1276365976 155 dbSNP
rs966892533 159 dbSNP
rs1452660310 174 dbSNP
rs899866065 177 dbSNP
rs934062932 178 dbSNP
rs979615886 181 dbSNP
rs1228387578 184 dbSNP
rs925414004 192 dbSNP
rs887203235 198 dbSNP
rs1004755240 205 dbSNP
rs935772872 210 dbSNP
rs1055912732 212 dbSNP
rs1274925438 213 dbSNP
rs1230109062 217 dbSNP
rs530723528 218 dbSNP
rs550427677 234 dbSNP
rs1292496435 245 dbSNP
rs569738257 249 dbSNP
rs766927875 258 dbSNP
rs1296373703 259 dbSNP
rs1409007579 261 dbSNP
rs1361213825 263 dbSNP
rs1370871407 274 dbSNP
rs1487914444 276 dbSNP
rs1190938017 283 dbSNP
rs138040639 291 dbSNP
rs1176930740 312 dbSNP
rs1022626416 317 dbSNP
rs1406496005 319 dbSNP
rs1428784265 322 dbSNP
rs971087515 325 dbSNP
rs1483589109 337 dbSNP
rs1254359084 348 dbSNP
rs1209150046 349 dbSNP
rs1324212023 352 dbSNP
rs887006542 359 dbSNP
rs1004059981 362 dbSNP
rs181439390 363 dbSNP
rs1031796774 364 dbSNP
rs955820938 365 dbSNP
rs149472061 366 dbSNP
rs1165357802 368 dbSNP
rs996983601 369 dbSNP
rs1366793168 371 dbSNP
rs1419600435 373 dbSNP
rs982940739 396 dbSNP
rs145976524 400 dbSNP
rs1401847447 405 dbSNP
rs1028820327 411 dbSNP
rs534951039 412 dbSNP
rs558384423 416 dbSNP
rs955431867 417 dbSNP
rs1159104862 418 dbSNP
rs1473234004 423 dbSNP
rs1484970610 442 dbSNP
rs752289398 454 dbSNP
rs565202312 464 dbSNP
rs1020944678 465 dbSNP
rs567507632 465 dbSNP
rs1423588234 468 dbSNP
rs966965921 477 dbSNP
rs908592025 479 dbSNP
rs1483967398 480 dbSNP
rs866201411 481 dbSNP
rs113928916 482 dbSNP
rs757813689 492 dbSNP
rs940140802 499 dbSNP
rs1038927995 503 dbSNP
rs1339589098 506 dbSNP
rs1287573480 518 dbSNP
rs533730940 522 dbSNP
rs991288335 523 dbSNP
rs1199526638 529 dbSNP
rs1363262166 531 dbSNP
rs1320021724 532 dbSNP
rs1457832879 536 dbSNP
rs1253722197 550 dbSNP
rs578186750 555 dbSNP
rs1163336864 557 dbSNP
rs915631883 561 dbSNP
rs1457726355 572 dbSNP
rs1369375370 575 dbSNP
rs949769672 576 dbSNP
rs1045389680 583 dbSNP
rs537754452 598 dbSNP
rs1425235318 599 dbSNP
rs1245782019 605 dbSNP
rs557658807 610 dbSNP
rs908188051 613 dbSNP
rs1464945050 614 dbSNP
rs375819263 616 dbSNP
rs1355418007 620 dbSNP
rs939946472 620 dbSNP
rs1038249996 621 dbSNP
rs1002916162 623 dbSNP
rs1297127591 625 dbSNP
rs1435927386 634 dbSNP
rs750166124 636 dbSNP
rs1367366972 637 dbSNP
rs1031347342 639 dbSNP
rs1386660844 643 dbSNP
rs542592824 649 dbSNP
rs1392050098 653 dbSNP
rs1165401017 658 dbSNP
rs552833328 660 dbSNP
rs997072622 662 dbSNP
rs1449548574 677 dbSNP
rs1391436455 685 dbSNP
rs1365616681 693 dbSNP
rs370291023 694 dbSNP
rs139795926 710 dbSNP
rs34244478 711 dbSNP
rs1021399200 719 dbSNP
rs1267969056 722 dbSNP
rs964547292 724 dbSNP
rs974551826 731 dbSNP
rs1274201204 732 dbSNP
rs1229365886 737 dbSNP
rs1344441246 743 dbSNP
rs1273200980 747 dbSNP
rs1232587615 751 dbSNP
rs2240023 753 dbSNP
rs1408402902 759 dbSNP
rs1370270522 765 dbSNP
rs1008287453 767 dbSNP
rs564755475 771 dbSNP
rs865900064 773 dbSNP
rs1429939212 774 dbSNP
rs1432901710 775 dbSNP
rs1397975468 778 dbSNP
rs1170364789 779 dbSNP
rs954664340 784 dbSNP
rs530592610 791 dbSNP
rs758837171 792 dbSNP
rs1020975616 794 dbSNP
rs1200827027 803 dbSNP
rs902476387 807 dbSNP
rs544129861 819 dbSNP
rs1484184790 827 dbSNP
rs1032997945 828 dbSNP
rs1317437779 829 dbSNP
rs1345740084 831 dbSNP
rs1277126320 834 dbSNP
rs1227054031 840 dbSNP
rs1350280278 841 dbSNP
rs141569257 846 dbSNP
rs920090842 851 dbSNP
rs1253715997 862 dbSNP
rs1484050867 867 dbSNP
rs34575417 867 dbSNP
rs1203862411 880 dbSNP
rs28534805 882 dbSNP
rs1331723857 883 dbSNP
rs1413413125 888 dbSNP
rs1025116624 890 dbSNP
rs1177317893 897 dbSNP
rs907423208 900 dbSNP
rs76611810 906 dbSNP
rs146388366 907 dbSNP
rs114738978 908 dbSNP
rs551863455 917 dbSNP
rs539859587 918 dbSNP
rs939684451 922 dbSNP
rs1280767594 930 dbSNP
rs974048530 934 dbSNP
rs377302907 943 dbSNP
rs1269305369 944 dbSNP
rs932562346 945 dbSNP
rs747191980 948 dbSNP
rs768963652 951 dbSNP
rs944106808 954 dbSNP
rs1030140917 960 dbSNP
rs1042493861 961 dbSNP
rs902549477 963 dbSNP
rs1000854710 968 dbSNP
rs1444383199 969 dbSNP
rs1032618282 974 dbSNP
rs1387895948 974 dbSNP
rs983418716 980 dbSNP
rs1159744524 981 dbSNP
rs908533282 982 dbSNP
rs895405218 983 dbSNP
rs1162914584 989 dbSNP
rs1374028566 990 dbSNP
rs1386111395 991 dbSNP
rs961442364 996 dbSNP
rs974070355 1003 dbSNP
rs1249193407 1006 dbSNP
rs1298596593 1008 dbSNP
rs919971641 1010 dbSNP
rs1313388377 1011 dbSNP
rs1223763841 1014 dbSNP
rs1320312861 1017 dbSNP
rs1289674454 1022 dbSNP
rs1256953875 1028 dbSNP
rs1229213048 1043 dbSNP
rs948794910 1049 dbSNP
rs537618956 1053 dbSNP
rs1316708359 1058 dbSNP
rs747228345 1060 dbSNP
rs1315670530 1066 dbSNP
rs556554912 1071 dbSNP
rs781111574 1072 dbSNP
rs970828222 1081 dbSNP
rs1191077774 1086 dbSNP
rs981193468 1092 dbSNP
rs1015285851 1094 dbSNP
rs961054163 1095 dbSNP
rs557720051 1097 dbSNP
rs567938304 1098 dbSNP
rs1200231370 1102 dbSNP
rs535914340 1104 dbSNP
rs932570643 1120 dbSNP
rs1464240439 1125 dbSNP
rs947040247 1142 dbSNP
rs1042717590 1146 dbSNP
rs995907161 1147 dbSNP
rs1432023660 1156 dbSNP
rs985356144 1160 dbSNP
rs1030110004 1165 dbSNP
rs1457364231 1173 dbSNP
rs912440434 1178 dbSNP
rs1225682853 1179 dbSNP
rs943844790 1182 dbSNP
rs1042525351 1183 dbSNP
rs902580864 1184 dbSNP
rs1274116432 1202 dbSNP
rs1365486014 1202 dbSNP
rs552942960 1206 dbSNP
rs527673714 1207 dbSNP
rs186585572 1216 dbSNP
rs576612327 1218 dbSNP
rs1367161295 1219 dbSNP
rs1054207839 1222 dbSNP
rs1306424491 1227 dbSNP
rs1429402338 1231 dbSNP
rs1405097930 1244 dbSNP
rs868133516 1256 dbSNP
rs1014807028 1258 dbSNP
rs748284273 1266 dbSNP
rs1220047113 1270 dbSNP
rs1425103350 1270 dbSNP
rs1012913145 1271 dbSNP
rs542313495 1274 dbSNP
rs974039077 1275 dbSNP
rs755212153 1279 dbSNP
rs1027004369 1280 dbSNP
rs562150423 1281 dbSNP
rs370869250 1285 dbSNP
rs1275582131 1288 dbSNP
rs190992466 1290 dbSNP
rs1251525344 1293 dbSNP
rs375084491 1298 dbSNP
rs980210625 1301 dbSNP
rs928786705 1303 dbSNP
rs1300542325 1307 dbSNP
rs1481037955 1321 dbSNP
rs1347295461 1327 dbSNP
rs558209662 1328 dbSNP
rs989386729 1329 dbSNP
rs913455834 1334 dbSNP
rs947659217 1345 dbSNP
rs1464617276 1348 dbSNP
rs1042686715 1360 dbSNP
rs1177457950 1365 dbSNP
rs769681747 1375 dbSNP
rs1410359934 1376 dbSNP
rs1015024064 1385 dbSNP
rs1264275253 1388 dbSNP
rs1050931848 1389 dbSNP
rs931726855 1390 dbSNP
rs1051564296 1402 dbSNP
rs961127053 1404 dbSNP
rs1178535439 1406 dbSNP
rs1482000885 1408 dbSNP
rs535042884 1411 dbSNP
rs1203711736 1420 dbSNP
rs1325663650 1421 dbSNP
rs1262523960 1422 dbSNP
rs1004682867 1424 dbSNP
rs995233722 1438 dbSNP
rs1227566797 1443 dbSNP
rs1015181898 1446 dbSNP
rs1309467115 1456 dbSNP
rs1476980525 1461 dbSNP
rs1027070948 1471 dbSNP
rs1303541691 1477 dbSNP
rs1188455611 1481 dbSNP
rs1454644467 1482 dbSNP
rs1387169163 1488 dbSNP
rs1158988474 1492 dbSNP
rs1419977879 1502 dbSNP
rs370305515 1504 dbSNP
rs899056639 1506 dbSNP
rs994777631 1507 dbSNP
rs1421726080 1508 dbSNP
rs182418653 1510 dbSNP
rs1367427263 1511 dbSNP
rs1183725014 1513 dbSNP
rs1425187750 1519 dbSNP
rs1246123636 1520 dbSNP
rs985814974 1525 dbSNP
rs1262324630 1527 dbSNP
rs11084510 1530 dbSNP
rs1432478295 1546 dbSNP
rs1270348731 1549 dbSNP
rs1377988847 1550 dbSNP
rs1228171414 1561 dbSNP
rs1006209395 1565 dbSNP
rs1315979683 1565 dbSNP
rs1248281275 1571 dbSNP
rs368443160 1575 dbSNP
rs1362266900 1579 dbSNP
rs762682816 1589 dbSNP
rs1383316544 1591 dbSNP
rs923739749 1594 dbSNP
rs1285423047 1597 dbSNP
rs1387737692 1598 dbSNP
rs1292212945 1603 dbSNP
rs1457706318 1616 dbSNP
rs1487315750 1620 dbSNP
rs988971049 1622 dbSNP
rs1163748707 1626 dbSNP
rs1445965316 1631 dbSNP
rs1218216545 1639 dbSNP
rs1187367597 1641 dbSNP
rs913415880 1646 dbSNP
rs148597114 1647 dbSNP
rs1053835124 1649 dbSNP
rs916605550 1654 dbSNP
rs948068380 1655 dbSNP
rs1224945825 1656 dbSNP
rs187777743 1666 dbSNP
rs1297011068 1673 dbSNP
rs1157917761 1674 dbSNP
rs1328762431 1682 dbSNP
rs540111272 1686 dbSNP
rs1005064161 1688 dbSNP
rs79096980 1692 dbSNP
rs770365402 1693 dbSNP
rs1051877433 1705 dbSNP
rs911615508 1706 dbSNP
rs528445575 1713 dbSNP
rs759076721 1720 dbSNP
rs1374737946 1729 dbSNP
rs1196575955 1731 dbSNP
rs1432406958 1732 dbSNP
rs940452065 1736 dbSNP
rs1335175651 1737 dbSNP
rs1036179325 1742 dbSNP
rs995703936 1745 dbSNP
rs551931683 1749 dbSNP
rs1341476765 1752 dbSNP
rs1254793083 1756 dbSNP
rs571753117 1763 dbSNP
rs1045041399 1773 dbSNP
rs1348304373 1773 dbSNP
rs1389604898 1773 dbSNP
rs1408386709 1773 dbSNP
rs1327698548 1780 dbSNP
rs905113421 1790 dbSNP
rs1309082158 1791 dbSNP
rs1349156158 1792 dbSNP
rs1225593257 1797 dbSNP
rs1285010022 1802 dbSNP
rs58449774 1804 dbSNP
rs1201386902 1807 dbSNP
rs1208225439 1814 dbSNP
rs1036119394 1822 dbSNP
rs1244762333 1823 dbSNP
rs953872406 1824 dbSNP
rs1439660086 1825 dbSNP
rs1254229654 1826 dbSNP
rs1006539944 1829 dbSNP
rs1177773064 1830 dbSNP
rs1236348617 1831 dbSNP
rs752097194 1838 dbSNP
rs1471109754 1844 dbSNP
rs1265528922 1846 dbSNP
rs113743271 1851 dbSNP
rs1328837319 1851 dbSNP
rs1020446301 1860 dbSNP
rs1423804379 1867 dbSNP
rs1337127789 1870 dbSNP
rs1019266432 1871 dbSNP
rs1412420293 1888 dbSNP
rs1331705821 1892 dbSNP
rs1178068948 1898 dbSNP
rs1408760980 1907 dbSNP
rs1178412774 1910 dbSNP
rs1453917842 1912 dbSNP
rs1406909725 1913 dbSNP
rs1158911033 1914 dbSNP
rs965301765 1915 dbSNP
rs1235945561 1917 dbSNP
rs1331081478 1921 dbSNP
rs977967982 1923 dbSNP
rs1444942418 1924 dbSNP
rs765772194 1925 dbSNP
rs978904510 1927 dbSNP
rs149790587 1930 dbSNP
rs147907261 1933 dbSNP
rs1227700686 1934 dbSNP
rs987129258 1936 dbSNP
rs1324524376 1939 dbSNP
rs56820378 1940 dbSNP
rs1338643069 1942 dbSNP
rs58563574 1942 dbSNP
rs1220602039 1946 dbSNP
rs1271460093 1947 dbSNP
rs1270580392 1948 dbSNP
rs1439520611 1949 dbSNP
rs1182373067 1950 dbSNP
rs1245636991 1956 dbSNP
rs1476716514 1957 dbSNP
rs60960490 1958 dbSNP
rs1200952608 1959 dbSNP
rs1429626013 1960 dbSNP
rs57629296 1964 dbSNP
rs1170450898 1967 dbSNP
rs1394723547 1968 dbSNP
rs1412145359 1970 dbSNP
rs1330065962 1973 dbSNP
rs1344504465 1975 dbSNP
rs56768081 1977 dbSNP
rs1318806295 1984 dbSNP
rs759040632 1986 dbSNP
rs59735573 1987 dbSNP
rs1163096747 1991 dbSNP
rs57258472 1994 dbSNP
rs1218202149 1995 dbSNP
rs916654073 2001 dbSNP
rs948114742 2002 dbSNP
rs1186717910 2005 dbSNP
rs1475412225 2008 dbSNP
rs1046396335 2009 dbSNP
rs141528713 2012 dbSNP
rs190672375 2013 dbSNP
rs1036571048 2015 dbSNP
rs920422948 2017 dbSNP
rs58390325 2018 dbSNP
rs1221212030 2023 dbSNP
rs1359678588 2025 dbSNP
rs59036221 2026 dbSNP
rs899363382 2035 dbSNP
rs1361263553 2040 dbSNP
rs930815605 2043 dbSNP
rs1048642313 2045 dbSNP
rs10422810 2046 dbSNP
rs58505900 2048 dbSNP
rs1347862422 2052 dbSNP
rs1302804145 2068 dbSNP
rs1371707675 2069 dbSNP
rs558273076 2082 dbSNP
rs1044927347 2092 dbSNP
rs752005916 2093 dbSNP
rs574994128 2097 dbSNP
rs1409390276 2098 dbSNP
rs1168841727 2102 dbSNP
rs1420850373 2105 dbSNP
rs755107952 2114 dbSNP
rs1188758890 2116 dbSNP
rs1390713000 2124 dbSNP
rs1268681214 2126 dbSNP
rs1200565124 2129 dbSNP
rs1423260545 2142 dbSNP
rs1490431439 2152 dbSNP
rs531322497 2161 dbSNP
rs532475518 2162 dbSNP
rs756203045 2184 dbSNP
rs1273668145 2185 dbSNP
rs368214731 2186 dbSNP
rs1366214872 2188 dbSNP
rs1282472116 2191 dbSNP
rs895840014 2198 dbSNP
rs565876213 2204 dbSNP
rs1347636039 2210 dbSNP
rs999480453 2215 dbSNP
rs1030913139 2216 dbSNP
rs1399641250 2218 dbSNP
rs958135913 2223 dbSNP
rs989350043 2228 dbSNP
rs574510477 2230 dbSNP
rs1461570106 2236 dbSNP
rs1355134820 2247 dbSNP
rs777891750 2251 dbSNP
rs1023862118 2256 dbSNP
rs1172590088 2257 dbSNP
rs1010320427 2258 dbSNP
rs1429197870 2262 dbSNP
rs1177679414 2264 dbSNP
rs540540893 2278 dbSNP
rs1175077319 2279 dbSNP
rs1000293520 2286 dbSNP
rs371958948 2287 dbSNP
rs928009176 2289 dbSNP
rs760366020 2295 dbSNP
rs940687836 2296 dbSNP
rs1223899382 2299 dbSNP
rs573223661 2304 dbSNP
rs147043609 2305 dbSNP
rs567793030 2313 dbSNP
rs1291887016 2322 dbSNP
rs1487638474 2324 dbSNP
rs10402083 2340 dbSNP
rs1445900670 2345 dbSNP
rs1406015111 2347 dbSNP
rs1263484254 2349 dbSNP
rs920307995 2356 dbSNP
rs1410155011 2357 dbSNP
rs35908163 2376 dbSNP
rs1050628430 2378 dbSNP
rs889248679 2380 dbSNP
rs942427263 2381 dbSNP
rs1040812864 2383 dbSNP
rs771582516 2397 dbSNP
rs1384964943 2401 dbSNP
rs1178443555 2408 dbSNP
rs930392516 2409 dbSNP
rs547266483 2412 dbSNP
rs1204163265 2414 dbSNP
rs775211892 2418 dbSNP
rs980581810 2423 dbSNP
rs1258781546 2424 dbSNP
rs999176003 2433 dbSNP
rs761330034 2435 dbSNP
rs147847929 2436 dbSNP
rs1309352524 2437 dbSNP
rs893739418 2441 dbSNP
rs1243882595 2448 dbSNP
rs1011206925 2453 dbSNP
rs1023472929 2456 dbSNP
rs1337987578 2457 dbSNP
rs765117111 2460 dbSNP
rs969192176 2467 dbSNP
rs1288724319 2469 dbSNP
rs1333297054 2469 dbSNP
rs1345422802 2487 dbSNP
rs551060500 2496 dbSNP
rs1442259308 2504 dbSNP
rs1454517367 2519 dbSNP
rs1315728117 2522 dbSNP
rs1446440672 2524 dbSNP
rs1035054989 2525 dbSNP
rs777682387 2527 dbSNP
rs1204348473 2529 dbSNP
rs1486036060 2530 dbSNP
rs1220473910 2547 dbSNP
rs1262751961 2547 dbSNP
rs1236317860 2550 dbSNP
rs946006176 2566 dbSNP
rs1248259618 2569 dbSNP
rs1325212620 2571 dbSNP
rs962043984 2580 dbSNP
rs972057494 2586 dbSNP
rs1292122011 2604 dbSNP
rs183324685 2604 dbSNP
rs10403092 2605 dbSNP
rs1163728815 2606 dbSNP
rs539305692 2611 dbSNP
rs763683509 2611 dbSNP
rs556615622 2615 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000307468.4 | 3UTR | uucacacuggagaaaggccuuau
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000307468.4 | 3UTR | uucacacuggagaaaggccuuau
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
133 hsa-miR-4680-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT378771 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT393867 ZDHHC21 zinc finger DHHC-type containing 21 2 4
MIRT446684 C2CD2 C2 calcium dependent domain containing 2 2 2
MIRT447600 MRPL3 mitochondrial ribosomal protein L3 2 2
MIRT450708 RNF152 ring finger protein 152 2 2
MIRT450784 PAPOLG poly(A) polymerase gamma 2 2
MIRT454623 COL23A1 collagen type XXIII alpha 1 chain 2 8
MIRT461620 PTCD3 pentatricopeptide repeat domain 3 2 2
MIRT462695 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT475530 HOXA3 homeobox A3 2 8
MIRT475739 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 4
MIRT489676 CYP1A1 cytochrome P450 family 1 subfamily A member 1 2 2
MIRT490610 SLC47A1 solute carrier family 47 member 1 2 2
MIRT493628 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT496152 RPS15A ribosomal protein S15a 2 2
MIRT499232 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT501496 PRICKLE2 prickle planar cell polarity protein 2 2 2
MIRT507163 GAS2L3 growth arrest specific 2 like 3 2 2
MIRT512389 MTRNR2L1 MT-RNR2-like 1 2 4
MIRT514626 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT517474 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT525332 CNGB1 cyclic nucleotide gated channel beta 1 2 2
MIRT526685 BAK1 BCL2 antagonist/killer 1 2 2
MIRT527317 CCR2 C-C motif chemokine receptor 2 2 2
MIRT527608 EYS eyes shut homolog (Drosophila) 2 2
MIRT528794 RAB32 RAB32, member RAS oncogene family 2 2
MIRT531048 TIPARP TCDD inducible poly(ADP-ribose) polymerase 2 2
MIRT532254 TBPL2 TATA-box binding protein like 2 2 2
MIRT533801 TMED7 transmembrane p24 trafficking protein 7 2 4
MIRT535887 MLEC malectin 2 2
MIRT540704 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT544645 PHF8 PHD finger protein 8 2 4
MIRT545760 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT555310 PPP2R5C protein phosphatase 2 regulatory subunit B'gamma 2 2
MIRT555877 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 4
MIRT559507 ARID5B AT-rich interaction domain 5B 2 2
MIRT560448 SLC30A7 solute carrier family 30 member 7 2 2
MIRT561262 ZIK1 zinc finger protein interacting with K protein 1 2 2
MIRT561795 PAWR pro-apoptotic WT1 regulator 2 2
MIRT567007 KLHL15 kelch like family member 15 2 2
MIRT569298 SURF6 surfeit 6 2 2
MIRT570606 MTRNR2L11 MT-RNR2-like 11 2 2
MIRT572888 ADCY2 adenylate cyclase 2 2 2
MIRT573119 ADAMTS18 ADAM metallopeptidase with thrombospondin type 1 motif 18 2 2
MIRT608332 ZNF670 zinc finger protein 670 2 6
MIRT614942 KCNK5 potassium two pore domain channel subfamily K member 5 2 2
MIRT615324 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT618441 ZNF800 zinc finger protein 800 2 2
MIRT620110 HARBI1 harbinger transposase derived 1 2 2
MIRT626008 ZNF517 zinc finger protein 517 2 2
MIRT626626 SLC30A6 solute carrier family 30 member 6 2 2
MIRT627842 POU3F1 POU class 3 homeobox 1 2 2
MIRT628386 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT629305 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT629864 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT630444 IDE insulin degrading enzyme 2 2
MIRT631854 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT633173 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT633477 ZNF724P zinc finger protein 724 2 2
MIRT634395 PLSCR1 phospholipid scramblase 1 2 2
MIRT635538 TRIM72 tripartite motif containing 72 2 2
MIRT635821 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT636169 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT636797 CYB5D1 cytochrome b5 domain containing 1 2 2
MIRT637952 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT645136 HES2 hes family bHLH transcription factor 2 2 2
MIRT645667 ADK adenosine kinase 2 2
MIRT646148 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT647004 NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 2 2
MIRT648187 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT650090 TERF2 telomeric repeat binding factor 2 2 2
MIRT650329 RTN2 reticulon 2 2 2
MIRT654224 RNF165 ring finger protein 165 2 2
MIRT654545 RAB1A RAB1A, member RAS oncogene family 2 2
MIRT656457 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT656828 KLF8 Kruppel like factor 8 2 2
MIRT657112 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT657930 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT659375 CREG2 cellular repressor of E1A stimulated genes 2 2 2
MIRT659833 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT662108 LACTB lactamase beta 2 4
MIRT662789 TBC1D25 TBC1 domain family member 25 2 2
MIRT669501 ARL3 ADP ribosylation factor like GTPase 3 2 2
MIRT669759 ZNF101 zinc finger protein 101 2 4
MIRT669800 GAN gigaxonin 2 2
MIRT670050 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT670299 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670388 EMP2 epithelial membrane protein 2 2 2
MIRT672862 C22orf29 retrotransposon Gag like 10 2 2
MIRT672890 FXN frataxin 2 2
MIRT673210 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT674001 KCNN3 potassium calcium-activated channel subfamily N member 3 2 2
MIRT674163 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674502 TIRAP TIR domain containing adaptor protein 2 2
MIRT675470 NUBPL nucleotide binding protein like 2 2
MIRT675671 TMOD2 tropomodulin 2 2 2
MIRT676006 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676074 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT676386 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676764 SNX2 sorting nexin 2 2 2
MIRT676896 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT676978 ZNF708 zinc finger protein 708 2 2
MIRT677236 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677369 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT677464 PDLIM3 PDZ and LIM domain 3 2 2
MIRT678081 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678093 ATCAY ATCAY, caytaxin 2 2
MIRT678324 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678417 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678521 ZNF347 zinc finger protein 347 2 2
MIRT678700 TRIP11 thyroid hormone receptor interactor 11 2 2
MIRT678829 PDE6A phosphodiesterase 6A 2 2
MIRT679991 RUNDC1 RUN domain containing 1 2 2
MIRT680751 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT681249 ZNF383 zinc finger protein 383 2 2
MIRT681422 GTF3C6 general transcription factor IIIC subunit 6 2 2
MIRT681948 SLC19A3 solute carrier family 19 member 3 2 2
MIRT689278 C5AR2 complement component 5a receptor 2 2 2
MIRT690389 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT691845 OSCAR osteoclast associated, immunoglobulin-like receptor 2 2
MIRT693863 IYD iodotyrosine deiodinase 2 2
MIRT696002 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT701930 MLLT1 MLLT1, super elongation complex subunit 2 2
MIRT702341 KLHL7 kelch like family member 7 2 2
MIRT703557 FKBP14 FK506 binding protein 14 2 2
MIRT705033 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT706341 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT709671 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT711212 EFHB EF-hand domain family member B 2 2
MIRT718342 PURA purine rich element binding protein A 2 2
MIRT722755 SIRPB2 signal regulatory protein beta 2 2 2
MIRT723535 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 2
MIRT724498 BFAR bifunctional apoptosis regulator 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4680-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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