pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol SON   
Synonyms BASS1, C21orf50, DBP-5, NREBP, SON3, TOKIMS
Description SON DNA binding protein
Transcript NM_138927   
Other Transcripts NM_032195   
Expression
Putative miRNA Targets on SON
3'UTR of SON
(miRNA target sites are highlighted)
>SON|NM_138927|3'UTR
   1 TAAATGGAAGCGCTTACCAGCCCAGCTTTGCCAGCCCTAATAAGAAGCATGCTAAAGCCACAGCAGCTACTGTGGTTCTT
  81 CAAGCAATGGGCCTTGTACCAAAGGACCTCATGGCTAATGCCACTTGCTTCAGGAGTGCCTCACGTAGATAGATTGAGGT
 161 TTTATAATAATCATTTCAGAATTTTACTCTGCATCACAATGTATTTCCTCTTTAATGTTGTAAATATTTGGCAATTTAAG
 241 ACATTGTGTAAAAAGCAATCTGTAAAAACATCTCCAGGCTTTGATTTTTGTACCATGGAAATTGTATTTAACCATACAGG
 321 GTTTTGGTATGTTTATATTGTTTACCTTAGTGATGTATTTGTTTAAGTGGCTAACATCCAAACGACTGTTTGAAGGCATC
 401 AGAGTAATCTTCAGTGTGGAATGTTAAATAACGCTTTTATACTGTATTTTGTACTATGATGTAACTCCCCTTCCTTATGG
 481 CTAGGCTACTGTAACACTTGCCTGTAATCAGTGAAGGGCTGTGCACCTTGTACTATTTCACAATGGGTTCTGCTGGACAG
 561 ATAATGGGCCAGTGTTATTGAGGTGATCAAGATCTGTTCCACAGGGCTAATGCCACCATCTCCCCTCAAAATTTTGTAGA
 641 GGTTCTAAAAAGAAAGTGGTATGTTGTGTGATGATCAGCACTAAGTCCTGCATTCCTGTTAAAGCCACTTGGGTCATAAG
 721 AAGGGAGTAAAAAATGAAGTCTGACTAGAATTCTATTGCAGAGGCCAAGTACATTTAGTATGGCATTGAGTTGTGATATA
 801 GTTTTACTTTGATGTGCATTTTGAATTTCAGCTACACCTAGATAGACGTAAAATGATAATTAAAATGCTGTAACCAACTT
 881 ATCTAATAAAATTGGCAACCAGCCACTATTTTGTTGACTATGAGAAAGTTAAAAGTTTATGTTAATTTTTAGGGTCTGAT
 961 AGAATATTTCATGTGTATTACAGTGGTATTCATATGCTATGTCTCTAAACTTTATTTTCAAAAGCTTAAGGCCCAAATAC
1041 AAACTTCTCTGGAATAAACGTGGTGTTTTATTTTCTGGGTTATAAAGTGAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accaCGUUUUCAU-UAACACCAAAAa 5'
              |:|:|  || |||| |||||| 
Target 5' tcacGTAGA--TAGATTGAGGTTTTa 3'
141 - 164 137.00 -9.20
2
miRNA  3' accacGUUUUCAUUAACACCAAAAa 5'
               ||: ||  | ||||||| | 
Target 5' agccaCAGCAGCTACTGTGGTTCTt 3'
56 - 80 132.00 -11.10
3
miRNA  3' accACGUUUUCAUUAACACCAAAAa 5'
             | :::|| |||  ||||| || 
Target 5' ttcTCTGGAA-TAAACGTGGTGTTt 3'
1045 - 1068 129.00 -5.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26573143 7 COSMIC
COSN30706709 13 COSMIC
COSN30121868 25 COSMIC
COSN30129692 36 COSMIC
COSN27006967 65 COSMIC
COSN9157164 65 COSMIC
COSN27006968 116 COSMIC
COSN1083078 126 COSMIC
COSN31492504 132 COSMIC
COSN31486687 145 COSMIC
COSN16269430 170 COSMIC
COSN16131579 190 COSMIC
COSN31545011 347 COSMIC
COSN31543305 353 COSMIC
COSN30541092 406 COSMIC
COSN10025855 605 COSMIC
COSN30174202 621 COSMIC
COSN20116848 768 COSMIC
COSN30540614 1024 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs73368009 2 dbSNP
rs1439218814 11 dbSNP
rs759482708 12 dbSNP
rs76429599 13 dbSNP
rs1217603314 26 dbSNP
rs775947529 75 dbSNP
rs948701702 84 dbSNP
rs1284948275 87 dbSNP
rs767234874 94 dbSNP
rs545711313 96 dbSNP
rs755909685 97 dbSNP
rs1298809919 99 dbSNP
rs564002568 104 dbSNP
rs1413481406 108 dbSNP
rs753464324 113 dbSNP
rs1224064656 116 dbSNP
rs756777793 117 dbSNP
rs1256037277 124 dbSNP
rs778576403 125 dbSNP
rs1366744692 133 dbSNP
rs747450046 137 dbSNP
rs1293042251 145 dbSNP
rs1306556046 146 dbSNP
rs1044410835 155 dbSNP
rs1227591515 164 dbSNP
rs1276171614 167 dbSNP
rs1484364975 168 dbSNP
rs769279227 170 dbSNP
rs781778483 172 dbSNP
rs748525732 174 dbSNP
rs770098618 175 dbSNP
rs764882230 180 dbSNP
rs773447937 181 dbSNP
rs1417714761 186 dbSNP
rs188609379 190 dbSNP
rs1171320313 192 dbSNP
rs1392138698 193 dbSNP
rs191712363 196 dbSNP
rs770940184 199 dbSNP
rs1376558225 200 dbSNP
rs1450713334 202 dbSNP
rs1334208870 207 dbSNP
rs1360435983 218 dbSNP
rs1011769596 228 dbSNP
rs1197689680 235 dbSNP
rs1456132880 237 dbSNP
rs1417123328 243 dbSNP
rs1021354070 245 dbSNP
rs953782448 246 dbSNP
rs1311558605 249 dbSNP
rs1276864630 252 dbSNP
rs184048098 253 dbSNP
rs1310057262 258 dbSNP
rs1446336889 270 dbSNP
rs1219624721 279 dbSNP
rs1398294790 285 dbSNP
rs1339140756 297 dbSNP
rs1272355282 304 dbSNP
rs1466919807 308 dbSNP
rs1358916490 318 dbSNP
rs1343099226 323 dbSNP
rs1019272545 330 dbSNP
rs1402941695 339 dbSNP
rs965453812 344 dbSNP
rs972665705 358 dbSNP
rs1437472983 384 dbSNP
rs1244550988 385 dbSNP
rs146483317 389 dbSNP
rs1482825990 392 dbSNP
rs1254020264 398 dbSNP
rs879219409 401 dbSNP
rs1486711887 403 dbSNP
rs1214273516 404 dbSNP
rs768357927 409 dbSNP
rs1286831091 421 dbSNP
rs1239465864 425 dbSNP
rs777032414 427 dbSNP
rs1317479653 429 dbSNP
rs1478140383 433 dbSNP
rs1378977475 434 dbSNP
rs1301404980 440 dbSNP
rs1455811808 449 dbSNP
rs1361692727 453 dbSNP
rs1195051139 470 dbSNP
rs1417380735 471 dbSNP
rs548352934 472 dbSNP
rs1375756855 476 dbSNP
rs149075032 479 dbSNP
rs1253831636 482 dbSNP
rs1349610196 485 dbSNP
rs1187974626 489 dbSNP
rs1172819961 493 dbSNP
rs1488593680 498 dbSNP
rs1262326286 505 dbSNP
rs1351685707 506 dbSNP
rs948834933 506 dbSNP
rs1294027321 507 dbSNP
rs1044914637 515 dbSNP
rs1321280941 516 dbSNP
rs928639477 519 dbSNP
rs143710156 525 dbSNP
rs1053340311 526 dbSNP
rs1297110008 533 dbSNP
rs1398685577 534 dbSNP
rs552921665 544 dbSNP
rs1293542035 545 dbSNP
rs1383310159 548 dbSNP
rs1320669828 573 dbSNP
rs1011715704 574 dbSNP
rs1043248912 575 dbSNP
rs1478053697 577 dbSNP
rs889988338 579 dbSNP
rs571197870 580 dbSNP
rs1006636016 583 dbSNP
rs1490804132 586 dbSNP
rs1019814548 589 dbSNP
rs1232754010 590 dbSNP
rs377261139 595 dbSNP
rs1263953616 597 dbSNP
rs900820349 608 dbSNP
rs1220667402 625 dbSNP
rs1275666068 628 dbSNP
rs1350069473 630 dbSNP
rs1238034473 635 dbSNP
rs1285484200 637 dbSNP
rs716 644 dbSNP
rs1277944479 647 dbSNP
rs1488558318 649 dbSNP
rs1323678880 653 dbSNP
rs1347863805 653 dbSNP
rs1385683349 658 dbSNP
rs1206876197 660 dbSNP
rs994259639 661 dbSNP
rs1465806385 667 dbSNP
rs1025488813 668 dbSNP
rs1168191104 669 dbSNP
rs1378087009 676 dbSNP
rs1481396650 676 dbSNP
rs1198057868 677 dbSNP
rs1432719245 682 dbSNP
rs1264938732 683 dbSNP
rs952639955 685 dbSNP
rs372386999 691 dbSNP
rs1257823912 693 dbSNP
rs1458337032 693 dbSNP
rs775938201 697 dbSNP
rs1347777341 704 dbSNP
rs1276011161 705 dbSNP
rs528775546 707 dbSNP
rs1023423033 708 dbSNP
rs969655596 714 dbSNP
rs1254478992 716 dbSNP
rs544306095 717 dbSNP
rs1375647526 718 dbSNP
rs1329077451 733 dbSNP
rs1470863883 744 dbSNP
rs1437509671 756 dbSNP
rs1157500568 757 dbSNP
rs1380434882 763 dbSNP
rs1171999141 765 dbSNP
rs201327991 767 dbSNP
rs398036380 767 dbSNP
rs71194852 767 dbSNP
rs377733624 769 dbSNP
rs1180510228 773 dbSNP
rs1440580559 781 dbSNP
rs1237743574 783 dbSNP
rs567957331 786 dbSNP
rs117504263 790 dbSNP
rs1388939253 795 dbSNP
rs1444534266 799 dbSNP
rs1279778790 818 dbSNP
rs556749490 832 dbSNP
rs1343404850 833 dbSNP
rs568724860 837 dbSNP
rs1240176750 838 dbSNP
rs988816636 838 dbSNP
rs1444892377 843 dbSNP
rs1306678003 845 dbSNP
rs539280674 847 dbSNP
rs947612755 848 dbSNP
rs761586316 860 dbSNP
rs889950116 876 dbSNP
rs1387001704 877 dbSNP
rs942889337 878 dbSNP
rs1160557493 880 dbSNP
rs557506569 882 dbSNP
rs572846891 886 dbSNP
rs372958112 898 dbSNP
rs1473865387 901 dbSNP
rs763163146 905 dbSNP
rs188943648 907 dbSNP
rs1441213337 913 dbSNP
rs1217947949 918 dbSNP
rs900933717 918 dbSNP
rs553341333 919 dbSNP
rs1254707357 920 dbSNP
rs56320855 921 dbSNP
rs993761570 929 dbSNP
rs1283416497 932 dbSNP
rs1456158820 934 dbSNP
rs574696119 946 dbSNP
rs1025268544 956 dbSNP
rs1342119175 956 dbSNP
rs888151880 960 dbSNP
rs1399320835 964 dbSNP
rs1005417502 977 dbSNP
rs1238213431 981 dbSNP
rs1316229184 988 dbSNP
rs1023531131 997 dbSNP
rs1162865395 999 dbSNP
rs1414739685 999 dbSNP
rs969225716 1001 dbSNP
rs1426223398 1005 dbSNP
rs1184523262 1008 dbSNP
rs1488219386 1011 dbSNP
rs1367219133 1030 dbSNP
rs1457899262 1034 dbSNP
rs1166066530 1042 dbSNP
rs764731922 1052 dbSNP
rs1223080212 1054 dbSNP
rs3178051 1055 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000290239.6 | 3UTR | UUUUAUAAUAAUCAUUUCAGAAUUUUACUCUGCAUCACAAUGUAUUUCCUCUUUAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000290239.6 | 3UTR | UUUUAUAAUAAUCAUUUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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