miRTarBase - #MIRT562103


—
pre-miRNA Information
pre-miRNA hsa-mir-4720   
Genomic Coordinates chr16: 81385018 - 81385093
Description Homo sapiens miR-4720 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4720-5p
Sequence 4| CCUGGCAUAUUUGGUAUAACUU |25
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs750386566 4 dbSNP
rs532921899 5 dbSNP
rs1025678089 6 dbSNP
rs1435476609 11 dbSNP
rs1426449829 13 dbSNP
rs1349517705 17 dbSNP
rs1448030025 20 dbSNP
Putative Targets

Gene Information
Gene Symbol ITGB1   
Synonyms CD29, FNRB, GPIIA, MDF2, MSK12, VLA-BETA, VLAB
Description integrin subunit beta 1
Transcript NM_033668   
Other Transcripts NM_002211 , NM_133376   
Expression
Putative miRNA Targets on ITGB1
3'UTR of ITGB1
(miRNA target sites are highlighted)		 
>ITGB1|NM_033668|3'UTR
   1 ATTGCCGGTGAAAATCCTATTTATAAGAGTGCCGTAACAACTGTGGTCAATCCGAAGTATGAGGGAAAATGAGTACTGCC
  81 CGTGCAAATCCCACAACACTGAATGCAAAGTAGCAATTTCCATAGTCACAGTTAGGTAGCTTTAGGGCAATATTGCCATG
 161 GTTTTACTCATGTGCAGGTTTTGAAAATGTACAATATGTATAATTTTTAAAATGTTTTATTATTTTGAAAATAATGTTGT
 241 AATTCATGCCAGGGACTGACAAAAGACTTGAGACAGGATGGTTACTCTTGTCAGCTAAGGTCACATTGTGCCTTTTTGAC
 321 CTTTTCTTCCTGGACTATTGAAATCAAGCTTATTGGATTAAGTGATATTTCTATAGCGATTGAAAGGGCAATAGTTAAAG
 401 TAATGAGCATGATGAGAGTTTCTGTTAATCATGTATTAAAACTGATTTTTAGCTTTACAAATATGTCAGTTTGCAGTTAT
 481 GCAGAATCCAAAGTAAATGTCCTGCTAGCTAGTTAAGGATTGTTTTAAATCTGTTATTTTGCTATTTGCCTGTTAGACAT
 561 GACTGATGACATATCTGAAAGACAAGTATGTTGAGAGTTGCTGGTGTAAAATACGTTTGAAATAGTTGATCTACAAAGGC
 641 CATGGGAAAAATTCAGAGAGTTAGGAAGGAAAAACCAATAGCTTTAAAACCTGTGTGCCATTTTAAGAGTTACTTAATGT
 721 TTGGTAACTTTTATGCCTTCACTTTACAAATTCAAGCCTTAGATAAAAGAACCGAGCAATTTTCTGCTAAAAAGTCCTTG
 801 ATTTAGCACTATTTACATACAGGCCATACTTTACAAAGTATTTGCTGAATGGGGACCTTTTGAGTTGAATTTATTTTATT
 881 ATTTTTATTTTGTTTAATGTCTGGTGCTTTCTGTCACCTCTTCTAATCTTTTAATGTATTTGTTTGCAATTTTGGGGTAA
 961 GACTTTTTTTATGAGTACTTTTTCTTTGAAGTTTTAGCGGTCAATTTGCCTTTTTAATGAACATGTGAAGTTATACTGTG
1041 GCTATGCAACAGCTCTCACCTACGCGAGTCTTACTTTGAGTTAGTGCCATAACAGACCACTGTATGTTTACTTCTCACCA
1121 TTTGAGTTGCCCATCTTGTTTCACACTAGTCACATTCTTGTTTTAAGTGCCTTTAGTTTTAACAGTTCACTTTTTACAGT
1201 GCTATTTACTGAAGTTATTTATTAAATATGCCTAAAATACTTAAATCGGATGTCTTGACTCTGATGTATTTTATCAGGTT
1281 GTGTGCATGAAATTTTTATAGATTAAAGAAGTTGAGGAAAAGCAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uuCAAUAUGGUUUAUACGGUCc 5'
            | | || ||||||||:||| 
Target 5' taGCTTTA-CAAATATGTCAGt 3'
 450 - 470 155.00 -14.10
2 
miRNA  3' uuCAAUAUGGUUUA-UACGGUCc 5'
            |||:|   || | ||||||| 
Target 5' atGTTGT---AATTCATGCCAGg 3'
 234 - 253 153.00 -16.20
3 
miRNA  3' uuCAAU--AUGGUUUAUACGGucc 5'
            ||||  ||::|||||||||   
Target 5' aaGTTATTTATTAAATATGCCtaa 3'
 1212 - 1235 142.00 -15.52
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31586715 7 COSMIC
COSN30745449 53 COSMIC
COSN30586654 94 COSMIC
COSN19623977 120 COSMIC
COSN1118191 452 COSMIC
COSN20385425 781 COSMIC
COSN20387531 828 COSMIC
COSN6477977 893 COSMIC
COSN14488283 1045 COSMIC
COSN21839745 1068 COSMIC
COSN29203659 1273 COSMIC
COSN5284666 1497 COSMIC
COSN7474764 1838 COSMIC
COSN9205205 2195 COSMIC
COSN24624133 2585 COSMIC
COSN21074035 2653 COSMIC
COSN29202897 2846 COSMIC
COSN6967227 3048 COSMIC
COSN27337444 3053 COSMIC
COSN22619873 3271 COSMIC
COSN27031152 3466 COSMIC
COSN20216947 3801 COSMIC
COSN1486301 3949 COSMIC
COSN16308904 4213 COSMIC
COSN29121012 4343 COSMIC
COSN25176877 4498 COSMIC
COSN6069058 4566 COSMIC
COSN23796271 4703 COSMIC
COSN24789807 5311 COSMIC
COSN30565716 5352 COSMIC
COSM5492646 5418 COSMIC
COSM4417041 5430 COSMIC
COSM5619996 5436 COSMIC
COSM3437362 5443 COSMIC
COSM9660740 5444 COSMIC
COSM1955436 5461 COSMIC
COSM9028391 5468 COSMIC
COSM4537006 5472 COSMIC
COSM3437361 5480 COSMIC
COSM282000 5481 COSMIC
COSN30102360 5503 COSMIC
COSN30186210 5509 COSMIC
COSN15330725 5519 COSMIC
COSN30159622 5528 COSMIC
COSN24935040 5542 COSMIC
COSN30106696 5584 COSMIC
COSN30101275 5610 COSMIC
COSN31540980 5616 COSMIC
COSN31594805 5684 COSMIC
COSN26568495 5712 COSMIC
COSN31517723 6176 COSMIC
COSN31519424 6196 COSMIC
COSN31609854 6201 COSMIC
COSN24978339 6254 COSMIC
COSN31484980 6676 COSMIC
COSN25044521 6714 COSMIC
COSN24978338 6719 COSMIC
COSN8639636 6741 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1359194234 3 dbSNP
rs778653860 4 dbSNP
rs146208097 6 dbSNP
rs202061681 7 dbSNP
rs753148358 8 dbSNP
rs201133811 10 dbSNP
rs1406746824 11 dbSNP
rs1178438061 15 dbSNP
rs200201473 17 dbSNP
rs1471013068 24 dbSNP
rs1057362207 39 dbSNP
rs755334997 46 dbSNP
rs202230806 48 dbSNP
rs201104449 50 dbSNP
rs1229968896 51 dbSNP
rs1222047149 52 dbSNP
rs1452749622 61 dbSNP
rs1205087029 62 dbSNP
rs1250155838 77 dbSNP
rs1357495408 83 dbSNP
rs950723829 88 dbSNP
rs143283234 92 dbSNP
rs1239912392 101 dbSNP
rs1364064588 101 dbSNP
rs1472241551 104 dbSNP
rs1161314604 105 dbSNP
rs1316393308 115 dbSNP
rs1037905168 119 dbSNP
rs3824602 120 dbSNP
rs963995957 123 dbSNP
rs1340164275 125 dbSNP
rs201607249 135 dbSNP
rs540427546 143 dbSNP
rs574281102 144 dbSNP
rs1346542331 146 dbSNP
rs554327394 153 dbSNP
rs1484308682 154 dbSNP
rs1056623730 155 dbSNP
rs1003170158 156 dbSNP
rs745843651 168 dbSNP
rs111449654 169 dbSNP
rs1369771961 175 dbSNP
rs1445055172 179 dbSNP
rs955964268 182 dbSNP
rs1388303281 183 dbSNP
rs1431519266 187 dbSNP
rs538386393 188 dbSNP
rs1031464058 189 dbSNP
rs893735804 193 dbSNP
rs968861021 196 dbSNP
rs796974542 205 dbSNP
rs774233896 213 dbSNP
rs1341242266 219 dbSNP
rs182294920 220 dbSNP
rs555929000 224 dbSNP
rs1013100324 238 dbSNP
rs1345019717 239 dbSNP
rs1229773645 249 dbSNP
rs1255863619 257 dbSNP
rs1343680637 259 dbSNP
rs1198190814 260 dbSNP
rs1453911200 261 dbSNP
rs1257867820 262 dbSNP
rs943207837 263 dbSNP
rs911944291 264 dbSNP
rs754287150 269 dbSNP
rs993740054 269 dbSNP
rs191430949 270 dbSNP
rs929427756 280 dbSNP
rs919247258 286 dbSNP
rs973400277 290 dbSNP
rs1037853794 301 dbSNP
rs1174368168 308 dbSNP
rs1434640478 311 dbSNP
rs567571504 312 dbSNP
rs1367814307 315 dbSNP
rs910722561 316 dbSNP
rs1265682594 323 dbSNP
rs1329810836 325 dbSNP
rs573286223 325 dbSNP
rs150509671 328 dbSNP
rs1323904640 333 dbSNP
rs1258966644 337 dbSNP
rs1207724963 338 dbSNP
rs991637411 339 dbSNP
rs933403423 345 dbSNP
rs533992985 350 dbSNP
rs960486915 353 dbSNP
rs1035899503 360 dbSNP
rs988140969 361 dbSNP
rs1003284835 363 dbSNP
rs1266646780 371 dbSNP
rs566584053 374 dbSNP
rs770858004 378 dbSNP
rs1222107626 380 dbSNP
rs1342745952 389 dbSNP
rs534096776 393 dbSNP
rs924560273 396 dbSNP
rs1319943143 397 dbSNP
rs373501466 407 dbSNP
rs1391056986 408 dbSNP
rs968559137 418 dbSNP
rs893692230 422 dbSNP
rs1293285024 433 dbSNP
rs867124890 453 dbSNP
rs1023225432 465 dbSNP
rs1307324542 473 dbSNP
rs559794750 481 dbSNP
rs765726998 481 dbSNP
rs773733429 481 dbSNP
rs1345596721 483 dbSNP
rs578139736 486 dbSNP
rs557838857 490 dbSNP
rs1403640398 492 dbSNP
rs1300731642 494 dbSNP
rs890278965 496 dbSNP
rs768380728 498 dbSNP
rs188604118 500 dbSNP
rs763114823 501 dbSNP
rs1271741736 505 dbSNP
rs929375198 508 dbSNP
rs778200218 521 dbSNP
rs1312378961 522 dbSNP
rs1051040471 523 dbSNP
rs1383201751 524 dbSNP
rs1338416026 525 dbSNP
rs1439990013 528 dbSNP
rs919361547 530 dbSNP
rs1353845372 531 dbSNP
rs1328349870 537 dbSNP
rs1410535511 544 dbSNP
rs973347875 557 dbSNP
rs1304311197 566 dbSNP
rs1161853438 571 dbSNP
rs756197829 586 dbSNP
rs1305607710 587 dbSNP
rs1052373561 588 dbSNP
rs1223980323 589 dbSNP
rs1386292545 591 dbSNP
rs1185792122 592 dbSNP
rs1189264121 595 dbSNP
rs1311495185 606 dbSNP
rs935305816 610 dbSNP
rs916125495 616 dbSNP
rs1479979702 627 dbSNP
rs1482675836 629 dbSNP
rs1200114477 631 dbSNP
rs1232807591 636 dbSNP
rs992147485 642 dbSNP
rs1438991285 645 dbSNP
rs960352302 651 dbSNP
rs1481117644 660 dbSNP
rs1035845414 661 dbSNP
rs1411841878 664 dbSNP
rs947302428 671 dbSNP
rs1164579903 673 dbSNP
rs780146471 678 dbSNP
rs1428375649 687 dbSNP
rs915741209 690 dbSNP
rs1227736777 693 dbSNP
rs966424094 700 dbSNP
rs1020727028 713 dbSNP
rs1010534421 714 dbSNP
rs1325448137 720 dbSNP
rs991768387 722 dbSNP
rs1454422269 728 dbSNP
rs1315439928 736 dbSNP
rs1341457370 740 dbSNP
rs868410957 741 dbSNP
rs1454166630 749 dbSNP
rs893462541 752 dbSNP
rs1235992561 760 dbSNP
rs1336080681 762 dbSNP
rs959796965 771 dbSNP
rs562891263 772 dbSNP
rs1468104625 776 dbSNP
rs1017306124 780 dbSNP
rs1398378626 780 dbSNP
rs2504019 781 dbSNP
rs1461696556 785 dbSNP
rs529495212 789 dbSNP
rs1171039011 790 dbSNP
rs971818508 791 dbSNP
rs141652854 793 dbSNP
rs1357110071 794 dbSNP
rs184104915 794 dbSNP
rs1337218162 804 dbSNP
rs1006440057 807 dbSNP
rs755389827 809 dbSNP
rs889400356 811 dbSNP
rs1362542975 821 dbSNP
rs1182304759 822 dbSNP
rs2488318 828 dbSNP
rs1276582792 834 dbSNP
rs367818041 841 dbSNP
rs1267669872 842 dbSNP
rs998123074 855 dbSNP
rs902034636 860 dbSNP
rs1243250704 865 dbSNP
rs1477971526 866 dbSNP
rs1037752914 875 dbSNP
rs1422432754 877 dbSNP
rs1052449121 881 dbSNP
rs1337835436 882 dbSNP
rs1387388418 892 dbSNP
rs942165866 893 dbSNP
rs1320006372 897 dbSNP
rs1247716541 900 dbSNP
rs1382895968 904 dbSNP
rs915888932 906 dbSNP
rs1313661594 919 dbSNP
rs1345782480 922 dbSNP
rs2488317 927 dbSNP
rs1272940550 934 dbSNP
rs545080152 937 dbSNP
rs376720067 938 dbSNP
rs577675363 942 dbSNP
rs915835090 956 dbSNP
rs75957317 968 dbSNP
rs1285391235 969 dbSNP
rs191460285 976 dbSNP
rs1451599785 977 dbSNP
rs1220023859 979 dbSNP
rs1271604642 981 dbSNP
rs566616920 984 dbSNP
rs72784063 998 dbSNP
rs971767565 1000 dbSNP
rs1471401578 1004 dbSNP
rs1160142929 1010 dbSNP
rs1408456132 1010 dbSNP
rs1404478369 1015 dbSNP
rs1321538928 1020 dbSNP
rs7901200 1020 dbSNP
rs1015929729 1024 dbSNP
rs984902823 1030 dbSNP
rs953641729 1036 dbSNP
rs957842299 1046 dbSNP
rs1348937890 1051 dbSNP
rs1241440391 1060 dbSNP
rs1017670751 1065 dbSNP
rs1007244884 1066 dbSNP
rs760198457 1069 dbSNP
rs954600544 1075 dbSNP
rs1356101986 1083 dbSNP
rs1030213043 1095 dbSNP
rs997797036 1100 dbSNP
rs1294643574 1101 dbSNP
rs1490646225 1102 dbSNP
rs1234019833 1103 dbSNP
rs966144713 1104 dbSNP
rs1181709690 1112 dbSNP
rs1435507075 1114 dbSNP
rs993252664 1119 dbSNP
rs1183541397 1140 dbSNP
rs1233057653 1141 dbSNP
rs1472356115 1144 dbSNP
rs72784062 1146 dbSNP
rs534108767 1156 dbSNP
rs1224265943 1158 dbSNP
rs1168106100 1165 dbSNP
rs903988967 1178 dbSNP
rs566655891 1185 dbSNP
rs1006702158 1188 dbSNP
rs551325258 1191 dbSNP
rs759615265 1192 dbSNP
rs1012688594 1196 dbSNP
rs894582244 1196 dbSNP
rs1056174562 1203 dbSNP
rs539880037 1204 dbSNP
rs374747605 1213 dbSNP
rs1336916926 1229 dbSNP
rs1036230869 1238 dbSNP
rs569253057 1246 dbSNP
rs1041992446 1247 dbSNP
rs1250857731 1252 dbSNP
rs908990793 1270 dbSNP
rs946317173 1274 dbSNP
rs539510980 1275 dbSNP
rs1187861505 1280 dbSNP
rs529261697 1289 dbSNP
rs958004838 1293 dbSNP
rs767070395 1294 dbSNP
rs1412966592 1303 dbSNP
rs1338876185 1304 dbSNP
rs986167218 1308 dbSNP
rs921618770 1310 dbSNP
rs1304679892 1315 dbSNP
rs367725146 1315 dbSNP
rs954379949 1315 dbSNP
rs568146717 1342 dbSNP
rs993365908 1345 dbSNP
rs961963167 1346 dbSNP
rs1229026976 1348 dbSNP
rs976707667 1350 dbSNP
rs186876411 1352 dbSNP
rs966303304 1357 dbSNP
rs1031129346 1370 dbSNP
rs999675268 1375 dbSNP
rs1408807107 1377 dbSNP
rs1207829600 1389 dbSNP
rs1444912436 1391 dbSNP
rs1158504484 1393 dbSNP
rs1469004765 1394 dbSNP
rs968089437 1398 dbSNP
rs1377150723 1400 dbSNP
rs1479457764 1403 dbSNP
rs1022770848 1404 dbSNP
rs1006070880 1418 dbSNP
rs528825400 1419 dbSNP
rs1490278618 1420 dbSNP
rs1034444162 1429 dbSNP
rs1003000027 1430 dbSNP
rs907158292 1432 dbSNP
rs1036178760 1436 dbSNP
rs907197475 1438 dbSNP
rs1221115170 1439 dbSNP
rs1284833397 1442 dbSNP
rs1284266983 1443 dbSNP
rs1323782443 1466 dbSNP
rs1041769870 1467 dbSNP
rs946263564 1469 dbSNP
rs1486689209 1472 dbSNP
rs1205647911 1473 dbSNP
rs182998990 1474 dbSNP
rs1489886415 1483 dbSNP
rs546085220 1486 dbSNP
rs1201657804 1487 dbSNP
rs190068957 1496 dbSNP
rs910253744 1497 dbSNP
rs1344625229 1502 dbSNP
rs985895492 1503 dbSNP
rs1365928543 1506 dbSNP
rs921588764 1508 dbSNP
rs1364203433 1511 dbSNP
rs1402617119 1513 dbSNP
rs1304402098 1520 dbSNP
rs933103406 1532 dbSNP
rs562587896 1539 dbSNP
rs759483099 1540 dbSNP
rs1227412218 1548 dbSNP
rs971725713 1556 dbSNP
rs1318533449 1560 dbSNP
rs924226822 1565 dbSNP
rs978328568 1571 dbSNP
rs1345878038 1572 dbSNP
rs961911088 1575 dbSNP
rs1016192860 1578 dbSNP
rs371538378 1588 dbSNP
rs1022466313 1597 dbSNP
rs1399495974 1610 dbSNP
rs1252882093 1615 dbSNP
rs958565791 1616 dbSNP
rs761148276 1622 dbSNP
rs1164496064 1623 dbSNP
rs1383970193 1636 dbSNP
rs1427090644 1637 dbSNP
rs1164705453 1643 dbSNP
rs368072615 1646 dbSNP
rs1177752802 1648 dbSNP
rs1296127311 1652 dbSNP
rs1375030724 1656 dbSNP
rs1314094489 1664 dbSNP
rs1380577115 1665 dbSNP
rs1248085437 1676 dbSNP
rs370436710 1686 dbSNP
rs1427634267 1693 dbSNP
rs1253338230 1695 dbSNP
rs1481067533 1700 dbSNP
rs1181694502 1704 dbSNP
rs1241693247 1705 dbSNP
rs775003771 1707 dbSNP
rs897171922 1710 dbSNP
rs1189102351 1712 dbSNP
rs1390058383 1714 dbSNP
rs1408906398 1719 dbSNP
rs1476156294 1722 dbSNP
rs1355975756 1730 dbSNP
rs573658073 1733 dbSNP
rs555449113 1738 dbSNP
rs1380324200 1747 dbSNP
rs770837248 1749 dbSNP
rs185654730 1751 dbSNP
rs893344901 1755 dbSNP
rs1315679222 1756 dbSNP
rs1212930923 1762 dbSNP
rs1297793487 1769 dbSNP
rs1004804777 1772 dbSNP
rs573063230 1773 dbSNP
rs557886546 1787 dbSNP
rs1264994202 1789 dbSNP
rs1204221403 1790 dbSNP
rs1203292182 1800 dbSNP
rs1261446986 1824 dbSNP
rs1462963527 1831 dbSNP
rs1054717671 1836 dbSNP
rs942984036 1837 dbSNP
rs148060208 1838 dbSNP
rs1184327535 1845 dbSNP
rs1051232607 1848 dbSNP
rs571201370 1853 dbSNP
rs1428531072 1864 dbSNP
rs1216574577 1865 dbSNP
rs931720016 1866 dbSNP
rs933052518 1883 dbSNP
rs923041429 1890 dbSNP
rs773538956 1892 dbSNP
rs1428542939 1893 dbSNP
rs940374432 1908 dbSNP
rs1290504357 1910 dbSNP
rs1362781957 1916 dbSNP
rs1222942572 1928 dbSNP
rs1040001092 1930 dbSNP
rs781073625 1931 dbSNP
rs1269792586 1938 dbSNP
rs944349889 1940 dbSNP
rs909081211 1942 dbSNP
rs984719772 1943 dbSNP
rs978276184 1944 dbSNP
rs770907588 1954 dbSNP
rs1485925713 1957 dbSNP
rs758551222 1968 dbSNP
rs958904518 1995 dbSNP
rs1469679022 1997 dbSNP
rs1034170684 2003 dbSNP
rs1176971213 2010 dbSNP
rs77696425 2013 dbSNP
rs1407000829 2019 dbSNP
rs1172924059 2024 dbSNP
rs1320247209 2025 dbSNP
rs11353492 2026 dbSNP
rs1174207873 2026 dbSNP
rs1491395721 2026 dbSNP
rs5784310 2026 dbSNP
rs869284762 2026 dbSNP
rs1279126829 2027 dbSNP
rs1491475242 2027 dbSNP
rs915388337 2029 dbSNP
rs569298238 2031 dbSNP
rs959702734 2034 dbSNP
rs1447208386 2041 dbSNP
rs1244378811 2045 dbSNP
rs1184152321 2046 dbSNP
rs1221162775 2055 dbSNP
rs769868682 2057 dbSNP
rs1266140787 2063 dbSNP
rs1035132729 2066 dbSNP
rs981292587 2070 dbSNP
rs557017426 2074 dbSNP
rs971443798 2092 dbSNP
rs747810646 2102 dbSNP
rs1231918579 2106 dbSNP
rs1020388487 2109 dbSNP
rs1010202310 2113 dbSNP
rs535603455 2117 dbSNP
rs957390534 2118 dbSNP
rs1033461544 2126 dbSNP
rs1408706635 2149 dbSNP
rs1539385 2155 dbSNP
rs1161526275 2171 dbSNP
rs147439142 2175 dbSNP
rs1367545646 2179 dbSNP
rs528738340 2181 dbSNP
rs887738924 2185 dbSNP
rs1027880933 2189 dbSNP
rs1272633649 2198 dbSNP
rs996050562 2205 dbSNP
rs1382783422 2236 dbSNP
rs781074565 2240 dbSNP
rs1294530919 2241 dbSNP
rs1361685701 2249 dbSNP
rs180704974 2259 dbSNP
rs562522258 2261 dbSNP
rs552705637 2270 dbSNP
rs530996050 2273 dbSNP
rs1452573883 2282 dbSNP
rs1042073397 2286 dbSNP
rs1183809089 2286 dbSNP
rs1443723153 2287 dbSNP
rs1300395413 2305 dbSNP
rs542647748 2310 dbSNP
rs1443456609 2313 dbSNP
rs1036071388 2317 dbSNP
rs940471749 2335 dbSNP
rs1167382981 2336 dbSNP
rs2383977 2341 dbSNP
rs991382678 2355 dbSNP
rs908867254 2368 dbSNP
rs1450865513 2369 dbSNP
rs1049229802 2375 dbSNP
rs1384156663 2376 dbSNP
rs35323711 2380 dbSNP
rs397773744 2380 dbSNP
rs768359879 2380 dbSNP
rs749890875 2383 dbSNP
rs761293116 2383 dbSNP
rs879190738 2388 dbSNP
rs376783014 2393 dbSNP
rs1163627460 2401 dbSNP
rs1443444736 2414 dbSNP
rs779665514 2427 dbSNP
rs563900582 2430 dbSNP
rs1460729586 2434 dbSNP
rs1458846472 2435 dbSNP
rs982158249 2439 dbSNP
rs937252578 2443 dbSNP
rs927209121 2445 dbSNP
rs1424310852 2446 dbSNP
rs961487417 2451 dbSNP
rs1178861934 2455 dbSNP
rs981239715 2457 dbSNP
rs1232027276 2460 dbSNP
rs1171701011 2462 dbSNP
rs971222413 2463 dbSNP
rs1428826031 2478 dbSNP
rs913109693 2479 dbSNP
rs988885309 2487 dbSNP
rs1339094276 2498 dbSNP
rs1361794090 2503 dbSNP
rs768785649 2514 dbSNP
rs142798335 2517 dbSNP
rs1007320431 2523 dbSNP
rs954290549 2526 dbSNP
rs1245402307 2531 dbSNP
rs1324195130 2538 dbSNP
rs1029875055 2539 dbSNP
rs747510273 2541 dbSNP
rs1228920825 2544 dbSNP
rs1278489761 2547 dbSNP
rs1322371286 2557 dbSNP
rs1221520402 2559 dbSNP
rs1264762930 2578 dbSNP
rs138845961 2601 dbSNP
rs998267729 2602 dbSNP
rs563255630 2604 dbSNP
rs964539581 2624 dbSNP
rs1018744050 2626 dbSNP
rs1008595624 2628 dbSNP
rs866887331 2634 dbSNP
rs1309869764 2635 dbSNP
rs902311868 2637 dbSNP
rs115918459 2646 dbSNP
rs1037191491 2647 dbSNP
rs1378589952 2655 dbSNP
rs539848915 2656 dbSNP
rs1004619363 2674 dbSNP
rs887544032 2680 dbSNP
rs893477114 2685 dbSNP
rs1407649182 2687 dbSNP
rs756174555 2691 dbSNP
rs1303354435 2695 dbSNP
rs1402720690 2697 dbSNP
rs937011984 2722 dbSNP
rs938270192 2726 dbSNP
rs928108671 2729 dbSNP
rs573062945 2730 dbSNP
rs780591609 2737 dbSNP
rs1046638526 2743 dbSNP
rs529303755 2754 dbSNP
rs1419542100 2755 dbSNP
rs750823315 2758 dbSNP
rs949981182 2759 dbSNP
rs1268268270 2760 dbSNP
rs1418900856 2761 dbSNP
rs913055865 2764 dbSNP
rs372362086 2772 dbSNP
rs957452792 2773 dbSNP
rs75063790 2774 dbSNP
rs926041855 2777 dbSNP
rs1422157490 2778 dbSNP
rs921269174 2779 dbSNP
rs1367845338 2783 dbSNP
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rs1236090974 6135 dbSNP
rs1278860843 6136 dbSNP
rs1264774430 6141 dbSNP
rs1213375639 6145 dbSNP
rs1262198701 6145 dbSNP
rs200817975 6154 dbSNP
rs1486163827 6157 dbSNP
rs1192879913 6163 dbSNP
rs1242418411 6168 dbSNP
rs1455621116 6172 dbSNP
rs1194558947 6187 dbSNP
rs199743289 6197 dbSNP
rs201762835 6200 dbSNP
rs1217962268 6201 dbSNP
rs200587385 6204 dbSNP
rs1461406385 6208 dbSNP
rs1325564654 6211 dbSNP
rs545406278 6220 dbSNP
rs1442444966 6221 dbSNP
rs1275139694 6223 dbSNP
rs578121278 6226 dbSNP
rs1405995553 6227 dbSNP
rs1390718859 6228 dbSNP
rs199521971 6237 dbSNP
rs55720478 6238 dbSNP
rs201742673 6244 dbSNP
rs1459160162 6253 dbSNP
rs1308911602 6260 dbSNP
rs1413085035 6261 dbSNP
rs1182476183 6263 dbSNP
rs1329557262 6267 dbSNP
rs1472035767 6276 dbSNP
rs1213036934 6278 dbSNP
rs1271173528 6287 dbSNP
rs1000450999 6290 dbSNP
rs1200428905 6301 dbSNP
rs1232308444 6302 dbSNP
rs1451667062 6307 dbSNP
rs1179127798 6311 dbSNP
rs1289149800 6319 dbSNP
rs1211673191 6320 dbSNP
rs1330969410 6323 dbSNP
rs1268476847 6325 dbSNP
rs1228050297 6326 dbSNP
rs904797596 6327 dbSNP
rs1044681023 6328 dbSNP
rs1276807141 6329 dbSNP
rs1437361457 6332 dbSNP
rs1330524894 6336 dbSNP
rs1323656014 6340 dbSNP
rs7217 6340 dbSNP
rs948841849 6342 dbSNP
rs1437838147 6343 dbSNP
rs1350938102 6345 dbSNP
rs1389879066 6353 dbSNP
rs1158939702 6367 dbSNP
rs1455952271 6369 dbSNP
rs1336862720 6371 dbSNP
rs1228766424 6373 dbSNP
rs1272416812 6378 dbSNP
rs895989813 6381 dbSNP
rs1206947686 6383 dbSNP
rs1057203420 6398 dbSNP
rs139213078 6398 dbSNP
rs1186255823 6406 dbSNP
rs866382150 6408 dbSNP
rs1420398811 6412 dbSNP
rs1475835360 6415 dbSNP
rs1478073782 6419 dbSNP
rs929413599 6425 dbSNP
rs1330543581 6426 dbSNP
rs1370784410 6430 dbSNP
rs1191694193 6431 dbSNP
rs1357083979 6443 dbSNP
rs1466169594 6448 dbSNP
rs1269496367 6449 dbSNP
rs1248536120 6451 dbSNP
rs1291251433 6453 dbSNP
rs199631678 6457 dbSNP
rs1347440706 6458 dbSNP
rs1208934352 6462 dbSNP
rs1260097391 6464 dbSNP
rs536708906 6465 dbSNP
rs1193160704 6468 dbSNP
rs201369204 6472 dbSNP
rs1240854641 6477 dbSNP
rs1445061290 6479 dbSNP
rs1474180281 6480 dbSNP
rs200403307 6483 dbSNP
rs909776355 6489 dbSNP
rs1219974306 6490 dbSNP
rs1171328349 6491 dbSNP
rs1377093197 6492 dbSNP
rs1344425728 6493 dbSNP
rs1301283681 6498 dbSNP
rs985363762 6503 dbSNP
rs953844733 6524 dbSNP
rs1366617271 6525 dbSNP
rs1370291165 6526 dbSNP
rs1049433 6533 dbSNP
rs976521798 6548 dbSNP
rs1433437694 6553 dbSNP
rs554116440 6555 dbSNP
rs1282515913 6569 dbSNP
rs201156331 6572 dbSNP
rs1031318094 6573 dbSNP
rs200255555 6579 dbSNP
rs1248149831 6580 dbSNP
rs904206643 6581 dbSNP
rs1414635317 6583 dbSNP
rs1191420655 6593 dbSNP
rs1423896452 6609 dbSNP
rs201952514 6611 dbSNP
rs201356078 6630 dbSNP
rs1171246178 6631 dbSNP
rs1466170029 6635 dbSNP
rs200070655 6644 dbSNP
rs1382445634 6650 dbSNP
rs1458778449 6653 dbSNP
rs1450769265 6661 dbSNP
rs1390773630 6662 dbSNP
rs1187780359 6665 dbSNP
rs1393903668 6666 dbSNP
rs202200623 6671 dbSNP
rs200931440 6674 dbSNP
rs199854430 6675 dbSNP
rs1238530951 6679 dbSNP
rs201884877 6690 dbSNP
rs1211121530 6695 dbSNP
rs1442098339 6705 dbSNP
rs192292098 6708 dbSNP
rs1353239142 6711 dbSNP
rs139059000 6714 dbSNP
rs200027422 6720 dbSNP
rs538601179 6722 dbSNP
rs1297522950 6729 dbSNP
rs571455510 6742 dbSNP
rs1268765707 6746 dbSNP
rs924030166 6751 dbSNP
rs1381829952 6752 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control PAR-CLIP data was present in GSM545213. RNA binding protein: AGO2. Condition:Control PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM4903825
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID14_NS
Location of target site NM_133376 | 3UTR | GAAAAUAAUGUUGUAAUUCAUGCCAGGGACUGACAAAAGACUUGAGACAGGAUGGUUACUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903826
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID21_NS
Location of target site NM_133376 | 3UTR | AAUGUUGUAAUUCAUGCCAGGGACUGACAAAAGACUUGAGACAGGAUGGUUACUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_133376 | 3UTR | UUUGAAAAUGUACAAUAUGUAUAAUUUUUAAAAUGUUUUAUUAUUUUGAAAAUAAUGUUGUAAUUCAUGCCAGGGACUGACAAAAGACUUGAGACAGGAUGGUUACUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_133376 | 3UTR | AUAAUUUUUAAAAUGUUUUAUUAUUUUGAAAAUAAUGUUGUAAUUCAUGCCAGGGACUGACAAAAGACUUGAGACAGGAUGGUUACUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_133376 | 3UTR | ACAAUAUGUAUAAUUUUUAAAAUGUUUUAUUAUUUUGAAAAUAAUGUUGUAAUUCAUGCCAGGGACUGACAAAAGACUUGAGACAGGAUGGUUACUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_133376 | 3UTR | GAAAAUGUACAAUAUGUAUAAUUUUUAAAAUGUUUUAUUAUUUUGAAAAUAAUGUUGUAAUUCAUGCCAGGGACUGACAAAAGACUUGAGACAGGAUGGUUACUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_133376 | 3UTR | AUAUGUAUAAUUUUUAAAAUGUUUUAUUAUUUUGAAAAUAAUGUUGUAAUUCAUGCCAGGGACUGACAAAAGACUUGAGACAGGAUGGUUACUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_133376 | 3UTR | UGUAUAAUUUUUAAAAUGUUUUAUUAUUUUGAAAAUAAUGUUGUAAUUCAUGCCAGGGACUGACAAAAGACUUGAGACAGGAUGGUUACUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000396033.2 | 3UTR | UAAUUCAUGCCAGGGACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset GSM545213
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / Control
Location of target site ENST00000396033.2 | 3UTR | UAAUUCAUGCCAGGGACU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 11 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000396033.2 | 3UTR | UAAUUCAUGCCAGGGACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 12 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000396033.2 | 3UTR | UAAUUCAUGCCAGGGACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 13 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000396033.2 | 3UTR | UAAUUCAUGCCAGGGACU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
40 hsa-miR-4720-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT064869 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT099937 SOX4 SRY-box 4 2 2
MIRT204534 SLC39A10 solute carrier family 39 member 10 2 4
MIRT221679 ZNRF2 zinc and ring finger 2 2 2
MIRT296659 MRGBP MRG domain binding protein 2 6
MIRT331634 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT337078 RER1 retention in endoplasmic reticulum sorting receptor 1 2 2
MIRT497580 PTCHD4 patched domain containing 4 2 2
MIRT498838 NAPEPLD N-acyl phosphatidylethanolamine phospholipase D 2 4
MIRT502561 EBAG9 estrogen receptor binding site associated, antigen, 9 2 2
MIRT508128 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT511875 GOLGA7 golgin A7 2 6
MIRT512924 UBL4A ubiquitin like 4A 2 2
MIRT513833 KLHL15 kelch like family member 15 2 6
MIRT515889 FAM182B family with sequence similarity 182 member B 2 2
MIRT520201 WASL Wiskott-Aldrich syndrome like 2 2
MIRT526045 GMDS GDP-mannose 4,6-dehydratase 2 2
MIRT533601 TNPO1 transportin 1 2 2
MIRT535539 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 6
MIRT541150 PABPC1 poly(A) binding protein cytoplasmic 1 2 4
MIRT549609 TMEM101 transmembrane protein 101 2 2
MIRT552630 ZBTB41 zinc finger and BTB domain containing 41 2 2
MIRT555503 PNISR PNN interacting serine and arginine rich protein 2 2
MIRT560225 PCNA proliferating cell nuclear antigen 2 2
MIRT561671 RAPGEF2 Rap guanine nucleotide exchange factor 2 2 2
MIRT562103 ITGB1 integrin subunit beta 1 2 2
MIRT570710 E2F3 E2F transcription factor 3 2 2
MIRT570802 CKAP2L cytoskeleton associated protein 2 like 2 2
MIRT615261 DPF2 double PHD fingers 2 2 2
MIRT615389 ZNF747 zinc finger protein 747 2 2
MIRT616621 KCNJ11 potassium voltage-gated channel subfamily J member 11 2 4
MIRT641085 ZKSCAN2 zinc finger with KRAB and SCAN domains 2 2 2
MIRT654971 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT667033 PDE3A phosphodiesterase 3A 2 2
MIRT677217 RASSF6 Ras association domain family member 6 2 2
MIRT699243 SLC6A8 solute carrier family 6 member 8 2 2
MIRT711673 TRMT5 tRNA methyltransferase 5 2 2
MIRT713922 CACNA2D1 calcium voltage-gated channel auxiliary subunit alpha2delta 1 2 2
MIRT722736 BRMS1 breast cancer metastasis suppressor 1 2 2
MIRT724997 CDC27 cell division cycle 27 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4720-5p Gefitinib 123631 NSC715055 approved sensitive High Non-Small Cell Lung Cancer cell line (PC-9)
hsa-miR-4720-5p Yuanhuadine 6440572 sensitive High Non-Small Cell Lung Cancer cell line (PC-9)
hsa-miR-4720-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4720-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4720-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4720-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-4720-5p Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-4720-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)

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