pre-miRNA Information
pre-miRNA hsa-mir-1303   
Genomic Coordinates chr5: 154685776 - 154685861
Synonyms MIRN1303, hsa-mir-1303, MIR1303
Description Homo sapiens miR-1303 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1303
Sequence 52| UUUAGAGACGGGGUCUUGCUCU |73
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 5 + 154685830 23291724, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs370437195 6 dbSNP
rs1195001383 7 dbSNP
rs546614687 8 dbSNP
rs762579883 9 dbSNP
rs766041486 10 dbSNP
rs751079975 12 dbSNP
rs888516744 13 dbSNP
rs566454487 14 dbSNP
rs766973220 15 dbSNP
rs1474274822 17 dbSNP
rs753222192 18 dbSNP
rs1230907999 19 dbSNP
rs756552638 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CLSPN   
Synonyms -
Description claspin
Transcript NM_001190481   
Other Transcripts NM_022111   
Expression
Putative miRNA Targets on CLSPN
3'UTR of CLSPN
(miRNA target sites are highlighted)
>CLSPN|NM_001190481|3'UTR
   1 CACCATCAAAGGTGCCAAAATCTACATTGAGACTGCTTTGAGAAGTTTCTAGCACTGAAAGTTGGAATTGACACTCCAGC
  81 CAATGATCCTTCCTTCTTTCATAATCAATGCAATAAGATTGCAGACAGAAATTCCAGTGATTTCTACTGCACAGCTCTGG
 161 ACATCTCTTTTCCTAGTATTATTCCCTGAATTGGCCACTGATTTCAATTCTGCAGTATTTACAACATCAACAACTCATGG
 241 AATACTTGGGTGAGGTTTCCTTTTTTTTTTTTTTTTTAAGATGGGAGTCTCACTCTGTTGCCCAGCTTGGAGTGCAGTGG
 321 CGTGATCTCGGCTCACCACAATCTCTGCCTCCCAGGTTCAAGCGATTCTCCTCCTTCAGCCTCCCGAGTAGCTGGGATTA
 401 CAGGCATGTGCCAATACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTT
 481 GAACTCCTGACCTCAAATGATCCATCCACCTCGGCCCCACAAAGTGCTGGTCACATGCATGAGTCACTGCACCTGGCCTT
 561 GGGTTAGGTTTCACTTCCTCCATTAGACATTTGACATTTTATTGTAGCAGCTTTCTGGGTTAATATCTCTTTGTGATTGA
 641 TAGAAGTGGTTGGAAGAGGAAGAGTAGGGAAAAGTGTGACATTACAGATTAAACAGTGAAAATCAGTACCATAATGACTC
 721 CTTTACACCCATGAGATACGTACCATGATGACCAGGGCTCGGTGAAAGAAAGATTTCTTTTTTTTTTTTTGAGATAGTCT
 801 CACTTTGTTGCCCAGTCTGGAGTGCAGTGGCGCAATCTCGGCTCACGGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTC
 881 CTGTCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCATGCCACCACACCTGGCTAATTTTTGTATTTTTAGTGGAGACA
 961 GGGAGTCACCATGTTGGCCAGGCTGGTCTCGATCTCCTGACCTCAAGTGATCCAGCTGCCTCAGCCTCCCAAAGTGCTGA
1041 GATTACAGGCGTGAGCCACTGTGCCCAGCCAAAAGAACGATTTCTTAGATGGAGGACCTAGGAACCAACAGATGGGCTGC
1121 TGTATTACTCTTACCCCTTTCATTTTCCTGTATGCTTCTTCCCAAGGCAGCATCAAATTTTGAATTAATTTTTGCTGCTT
1201 AATAAGGACTTAAACTGGTACCCAAGTCAGAAAGACTCTGCCTCTAATTTTCTGGGGCTTGGGGATGAAGATAAAGTGTT
1281 ACACCCAGTGTTTGTCCACCACAGTCTGTGGGGCAGAGAGACCCTTCCTGGGACTGAATTCTCAATTTGAAGCACTGTTG
1361 TTCAAAGATCTCCCTTCTGGGTCTGACAAGAAGAAACATAACCCTTATTTATTGCATTCTTCTGGCTTACATACATTGCC
1441 CTCACTAATCAATGGACATTTCAGCATTTCATTACTAATTTTGAGAGAAGGCCACCATGGAATTTAATAAAAATATTATT
1521 GAAGAGAATTGCCATCATTCTCCATTTTCCCTGAACTACCACAAGCTTCTCAGAATTTTAGACAAATGTTTTTCCCCTCA
1601 GAACTGAGCATCAGTGCTGCTTTGGAAAAACATTCCATGTGAATACTGTGGTTTCAGTGTCAGGACCTGTACTTGGGCAG
1681 TTGGAAGAGAGTGTGCCAGTTTTTTACTGGGAGATGGGAACACCAATTTAATTGATGCAATTAGGTTGTAGGTTTTTTAC
1761 AGTTTTTCTTTTCTTTTCTTTTTCTTTTTCTTTTCTTTTCTTTTCTTTTTTTTTTTTTGAGACATAGGCTGGCTCTGTCA
1841 CCTAGGCTGGAATACAATGGCATGATCTCGGCTTACTGCAACCTCCGCCTCCTAGGTTCAAGCAATTCTGCCTCGGCCTC
1921 CCAAATAGCAGGGATTACAGGCACCTGCCACCACTCCCAGCTAATTTTTTGTATTTTTATTAGAGATGAGGTTTCGCCAT
2001 GTTGGCCAGGCTGGTCTTGAACTCCTGACCTGAGGTGATCCACCCGTCTCGGCCTCCCAAAGTGCTGGGATTATAGGCAT
2081 GAGCCACCGCACCCGGCCGGTTTTCTACAGTTTTCTAATACTCAAGATGTTGACTTTGACAATACTTATGTTTGTATACT
2161 TGTAATCTTATAATGGGGAAAATGTGTATAAAGATGTTTTAATATGTATGTAGTTTTTCAATAAATCTTAATGCCTTGAA
2241 GGGAAGATTTGCTGTCCAGCTTGAATGCTCATTCTTGGGTCAGTGCCTGTCTAACCTTGAGGAGCATTTCATTTTCAGGT
2321 TATCTCCATCCCAGGGAAACCCTCTGGGTCTAAACTGAGAAGCTGCTGCAATTGTCCCCTCACTGGCTTCTCAGTCCTAG
2401 TGAATTGATCAAGTTAACTTACCAAGTGGTTTGGGTTCAGCTCAGGTGAAGAGGATAATTGAGTTTACATAAATGGTACC
2481 TTCTATTATAGCTCTTTGTTTAAAAAACTTATTTTTTAGAGACAGTCTCATTCTGTTGCCCAGGTTAGAGTGCAGTGGCA
2561 CAATCATAGCTCACTGTACCCTTGAACTCCTGGGCTTCAGCATCCTCCTTCCTCAACCTTTGGAATAGCTGGGCCACATT
2641 ACAGGCATATGCCACCATGCCCAGCTAATTATTTTATTTTAGTAGAGACAGGGTCTTGCTGTGTTGCCCCAGCTGATCTT
2721 GAACTCCTGGCCTCAAGTAATCCTCCCACCTTGGCCTCCCAAAATGCTGGGGTCACAGGCTCAGCCACCATGCCCAGCCT
2801 GTTACAGCTTTGATTGGCCTTTCTCTTTAGCTAAGTTTGTATGTACTTCATTTTATCCATGGGTTCAAGATACATGTTTT
2881 TGCCTCTTTCTTTGAACTCTCTAAACAGTTCCCAAGGCAAAGTAGCCCTTGCTGGGCAAAAGAGAACTGAGCAGGAAGGC
2961 TAGATATTTCTTCCCTCTTGTTTCCCTACATGTCTTTTGAGGAGAGATAGAAAAGACAATTGGAATTGACAACTGAGGAT
3041 AAGAAAATTCAGCCAGGTCCGGTGGCTCACGCCAGCACTTTAGGAGACTGAGGTGGGTGCATTGCTTGAACTCAGGAGTT
3121 CGAGACCAGCCTGGGAAACATGGTGAAATCCCAACTCTAAAAAAAAAAAAAAAAAGAAAAAAAAAAGAAAATTAGTGCCT
3201 GAGAAATCCAGGGAGAAAATGGTTTCTGGGCTGGGCGTGGTGGCTTATGCCTGTAATCTCAGCACTTTGGGAGGCTGAGG
3281 CAGCTGGATCACCTAAGGTCAGGAGTTGGAGACCAGACTGACCAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAA
3361 ATCAGCCAGGCTTGGTGGTGGCAGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGACAAGAGAATTGCTTGAACCTGG
3441 GAGGCAGAGGTTGCAGTGAGCCGAGATCACGCCACTGCTCTCCAGCATGGGCGACAGAGTGAGACTCCCTCTCAAAAAAA
3521 AAAAGAAAGAAAGAAAATGGTTTCTGATTGAGGCTCCTGGGAGAAAGCACTCTTTGGAGAAAGAAAACTTGAGTCAAACT
3601 CTGGGTTACTTTTCCTTATGCCAGGATGGCTGCTATAAAGTAAGCTAAGCCTTGATCTTGGTAACAGGATTGACATGGAC
3681 AGTTTCAATCTGACCCATATGCCCTTTGCCCAAAGCACTGAGCCAGCAGCATCAGTTATGTTTTAATGAAATTGAAGCCC
3761 CAGGACCTGCCACTATGGCTCTGAGGAGGACTCAGCTTCACTAGCTTGGAAATTACATATTTGGAGGGATGAGAGCCCAT
3841 GAGTGTGGGAGATAGGGTAGGCTCAGTGTCAGTGTTTTTGTTTCTTCCTTGTTCCATACACTTGAGTAGGGATACATGGT
3921 ATTAACCTCTTTAAACAGGTCTCTAATTTCATCTCATTAATTCACAGTTGCACAGCCATACTAGGGTCTCTTCCATAAAC
4001 CATAAGATTTTATTCACCAAAGCTCTAGAGACAAGGTACTCAGATCTCTGTGGCATCCCTCATTTTCTCAACTGCTTCTC
4081 TACAAACTTCTCCTCACTTTGAGAGTTTCTAATGCTCAGGCTGGGAGACTTTTTAGGGGGTGTTTTTGGTTTTTATCTCC
4161 TAGGGTTATGTCTAATCACTCTTGTGGCATCCTGTCCTGGGATTTGTGCTCCTAAGGATAGAGGAGAGTATTTCTGGGAG
4241 GAGTGTTCCCATGATACTATTTGATTATGTCATCCTTGAGATGGTATTGTATCTTCTACCCTTATATCCTACTCATCGCC
4321 TGGCACACAGCTTGGAATGTAGTGGTGCCTACCACAGTTTGAATAAATAACACTACACCTTTCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucUCGUUCUGGGGCAGAGAUuu 5'
            :|::| ||||||||||||  
Target 5' aaGGTGAAACCCCGTCTCTAct 3'
3327 - 3348 160.00 -22.30
2
miRNA  3' ucUCGUUCUGGGGCAGAGAUUu 5'
            || |||||:|:| |||||| 
Target 5' tcAGAAAGACTCTGCCTCTAAt 3'
1227 - 1248 152.00 -19.40
3
miRNA  3' ucUCGUUCUGGGGCAGAGAUUu 5'
            ||::||||:|| |||| || 
Target 5' agAGTGAGACTCCCTCTCAAAa 3'
3496 - 3517 148.00 -22.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31613467 3 COSMIC
COSN31564833 7 COSMIC
COSN31495347 65 COSMIC
COSN30473873 80 COSMIC
COSN30113233 133 COSMIC
COSN6034681 160 COSMIC
COSN31568839 165 COSMIC
COSN30470292 173 COSMIC
COSN31557933 182 COSMIC
COSN30159918 184 COSMIC
COSN30172111 215 COSMIC
COSN19365865 260 COSMIC
COSN23285871 269 COSMIC
COSN17227272 581 COSMIC
COSN9025836 753 COSMIC
COSN10047850 981 COSMIC
COSN23191162 1551 COSMIC
COSN6034680 1643 COSMIC
COSN10047849 1672 COSMIC
COSN28051359 1768 COSMIC
COSN24336060 1790 COSMIC
COSN23796157 1990 COSMIC
COSN21133949 2099 COSMIC
COSN26461359 2227 COSMIC
COSN5371410 2581 COSMIC
COSN26680512 2655 COSMIC
COSN23724864 3170 COSMIC
COSN29070284 3176 COSMIC
COSN22741159 3367 COSMIC
COSN22590627 3382 COSMIC
COSN17472412 3765 COSMIC
COSN17876760 3831 COSMIC
COSN18238275 3843 COSMIC
COSN6034679 3896 COSMIC
COSN20722196 4361 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1222265767 5 dbSNP
rs375903787 6 dbSNP
rs1288807994 12 dbSNP
rs565552761 15 dbSNP
rs1350771665 18 dbSNP
rs1159063049 21 dbSNP
rs763397781 26 dbSNP
rs773325926 32 dbSNP
rs1439554757 34 dbSNP
rs371300587 36 dbSNP
rs748383467 38 dbSNP
rs992181994 39 dbSNP
rs1404144526 40 dbSNP
rs781491936 50 dbSNP
rs112552223 51 dbSNP
rs1180008786 52 dbSNP
rs1437446163 62 dbSNP
rs1352614911 67 dbSNP
rs749921795 71 dbSNP
rs1487809580 74 dbSNP
rs964279392 89 dbSNP
rs192809591 100 dbSNP
rs78523522 102 dbSNP
rs1356217059 104 dbSNP
rs1015029236 107 dbSNP
rs1239671978 110 dbSNP
rs1307529832 113 dbSNP
rs1237956864 127 dbSNP
rs1331305653 134 dbSNP
rs1006700281 137 dbSNP
rs1372054166 139 dbSNP
rs1328001869 149 dbSNP
rs760478426 150 dbSNP
rs887975208 154 dbSNP
rs1157758157 160 dbSNP
rs1349753092 165 dbSNP
rs764708283 167 dbSNP
rs532732031 170 dbSNP
rs996261073 173 dbSNP
rs999618745 177 dbSNP
rs1402760296 182 dbSNP
rs906576949 185 dbSNP
rs1024994943 199 dbSNP
rs1489550522 203 dbSNP
rs1284388862 205 dbSNP
rs1406269778 218 dbSNP
rs1012230535 223 dbSNP
rs1276205935 229 dbSNP
rs1230441107 230 dbSNP
rs1344389869 235 dbSNP
rs1278260402 238 dbSNP
rs902111601 246 dbSNP
rs1338294536 254 dbSNP
rs895129432 263 dbSNP
rs1414773175 272 dbSNP
rs1395371241 277 dbSNP
rs1055751717 278 dbSNP
rs1192951877 278 dbSNP
rs1208436744 278 dbSNP
rs1428755210 278 dbSNP
rs766839954 278 dbSNP
rs80209680 278 dbSNP
rs941269460 278 dbSNP
rs1194942344 280 dbSNP
rs76829482 282 dbSNP
rs888327486 285 dbSNP
rs1443283997 293 dbSNP
rs1281158523 295 dbSNP
rs1040998284 296 dbSNP
rs1476761775 299 dbSNP
rs1201448354 307 dbSNP
rs1322371207 311 dbSNP
rs571863443 316 dbSNP
rs145987306 317 dbSNP
rs1448717878 321 dbSNP
rs149381331 322 dbSNP
rs929753495 328 dbSNP
rs543159373 329 dbSNP
rs188300886 330 dbSNP
rs1331937063 334 dbSNP
rs1040749603 338 dbSNP
rs1287651703 341 dbSNP
rs942397258 343 dbSNP
rs138774266 346 dbSNP
rs1467208722 347 dbSNP
rs989730139 351 dbSNP
rs541302349 354 dbSNP
rs1052218073 355 dbSNP
rs552080075 363 dbSNP
rs1305918440 368 dbSNP
rs958491215 373 dbSNP
rs924140705 384 dbSNP
rs764709815 385 dbSNP
rs558326298 386 dbSNP
rs980605981 395 dbSNP
rs150212867 405 dbSNP
rs1228878969 406 dbSNP
rs528674164 415 dbSNP
rs182540073 417 dbSNP
rs554208354 418 dbSNP
rs148086568 442 dbSNP
rs1449269396 445 dbSNP
rs1435789176 447 dbSNP
rs559936651 448 dbSNP
rs1175162933 449 dbSNP
rs746125383 450 dbSNP
rs1423834096 452 dbSNP
rs888329473 453 dbSNP
rs1444330439 454 dbSNP
rs375328292 463 dbSNP
rs1180196193 464 dbSNP
rs371371879 472 dbSNP
rs1231861998 479 dbSNP
rs774476657 492 dbSNP
rs1453290567 496 dbSNP
rs553530855 500 dbSNP
rs189925066 509 dbSNP
rs1485880205 512 dbSNP
rs1354073244 513 dbSNP
rs996313623 517 dbSNP
rs1040805764 520 dbSNP
rs1225731524 525 dbSNP
rs901995400 537 dbSNP
rs1437221240 539 dbSNP
rs1208308866 540 dbSNP
rs1352134935 543 dbSNP
rs1053829218 552 dbSNP
rs1311880072 556 dbSNP
rs1273765978 558 dbSNP
rs760022362 562 dbSNP
rs1216468421 564 dbSNP
rs936952169 568 dbSNP
rs1339066952 571 dbSNP
rs1019215773 573 dbSNP
rs924165610 588 dbSNP
rs1406741496 596 dbSNP
rs1191293367 601 dbSNP
rs1010890616 608 dbSNP
rs892162483 617 dbSNP
rs1198671379 619 dbSNP
rs1052526777 623 dbSNP
rs1287942257 627 dbSNP
rs770983651 629 dbSNP
rs571924483 641 dbSNP
rs936284585 650 dbSNP
rs1464207734 652 dbSNP
rs1358285700 661 dbSNP
rs903616238 662 dbSNP
rs1170518769 665 dbSNP
rs1411169660 666 dbSNP
rs1044810464 667 dbSNP
rs1404932987 670 dbSNP
rs1016283527 675 dbSNP
rs1291032210 682 dbSNP
rs947889319 687 dbSNP
rs950726663 702 dbSNP
rs1415820646 703 dbSNP
rs550506733 710 dbSNP
rs531908817 711 dbSNP
rs1478123292 714 dbSNP
rs567881746 719 dbSNP
rs549435701 728 dbSNP
rs1184572869 729 dbSNP
rs907909003 733 dbSNP
rs1237832726 735 dbSNP
rs985204401 736 dbSNP
rs952018078 739 dbSNP
rs922037348 740 dbSNP
rs1222941321 741 dbSNP
rs1233720476 743 dbSNP
rs1062047 749 dbSNP
rs1319245447 750 dbSNP
rs974778846 757 dbSNP
rs1206638897 760 dbSNP
rs527816471 761 dbSNP
rs1019521084 762 dbSNP
rs1006602938 772 dbSNP
rs1234418431 773 dbSNP
rs889504192 777 dbSNP
rs1010524549 778 dbSNP
rs186895712 779 dbSNP
rs1053475208 780 dbSNP
rs1168310817 782 dbSNP
rs1377919226 782 dbSNP
rs956490930 784 dbSNP
rs77242716 789 dbSNP
rs1298400927 790 dbSNP
rs1183357464 791 dbSNP
rs1414308361 791 dbSNP
rs879289482 791 dbSNP
rs61776919 799 dbSNP
rs1462842136 814 dbSNP
rs1241482958 815 dbSNP
rs1448303118 816 dbSNP
rs1397528985 817 dbSNP
rs1203116634 824 dbSNP
rs1330153656 831 dbSNP
rs1033233099 832 dbSNP
rs1225957093 834 dbSNP
rs936357783 835 dbSNP
rs1461866173 836 dbSNP
rs1370189605 839 dbSNP
rs1248574533 840 dbSNP
rs902164986 846 dbSNP
rs560528282 847 dbSNP
rs1423037458 857 dbSNP
rs545118754 858 dbSNP
rs533364241 859 dbSNP
rs1398094520 863 dbSNP
rs903498688 864 dbSNP
rs949615794 868 dbSNP
rs918094487 878 dbSNP
rs113039854 881 dbSNP
rs1011990559 899 dbSNP
rs543325845 906 dbSNP
rs1383629286 939 dbSNP
rs749375140 950 dbSNP
rs191223979 952 dbSNP
rs1214474900 954 dbSNP
rs1440542884 957 dbSNP
rs1252818043 959 dbSNP
rs1470209605 960 dbSNP
rs1264219150 964 dbSNP
rs1244438685 965 dbSNP
rs1194104953 985 dbSNP
rs1317932582 990 dbSNP
rs1266482747 991 dbSNP
rs1225206100 994 dbSNP
rs1357817227 1001 dbSNP
rs1056698865 1009 dbSNP
rs1307200335 1012 dbSNP
rs1241839135 1014 dbSNP
rs1314790684 1015 dbSNP
rs938092970 1019 dbSNP
rs1337139049 1025 dbSNP
rs772609490 1027 dbSNP
rs1304257313 1034 dbSNP
rs575801090 1041 dbSNP
rs1390271741 1051 dbSNP
rs768605463 1056 dbSNP
rs1304816150 1071 dbSNP
rs554368177 1078 dbSNP
rs147115513 1079 dbSNP
rs1374246831 1081 dbSNP
rs1454527037 1091 dbSNP
rs1048942666 1100 dbSNP
rs930667876 1109 dbSNP
rs1330085929 1111 dbSNP
rs746770195 1130 dbSNP
rs373701877 1131 dbSNP
rs1392715821 1135 dbSNP
rs1489994249 1140 dbSNP
rs974831096 1141 dbSNP
rs1457182171 1142 dbSNP
rs1345546379 1153 dbSNP
rs779758263 1161 dbSNP
rs911939609 1162 dbSNP
rs1258512509 1170 dbSNP
rs989394820 1172 dbSNP
rs372801274 1182 dbSNP
rs771560539 1190 dbSNP
rs550829367 1191 dbSNP
rs1331235865 1203 dbSNP
rs1379986634 1207 dbSNP
rs1194277503 1208 dbSNP
rs973062558 1218 dbSNP
rs956206825 1221 dbSNP
rs1033700360 1246 dbSNP
rs1298619018 1258 dbSNP
rs1402165823 1260 dbSNP
rs1157109444 1263 dbSNP
rs1453319547 1265 dbSNP
rs1430121221 1269 dbSNP
rs369967460 1270 dbSNP
rs1479755477 1273 dbSNP
rs1268748873 1274 dbSNP
rs1019418659 1276 dbSNP
rs6660890 1276 dbSNP
rs1260066938 1287 dbSNP
rs1023299933 1290 dbSNP
rs1204247160 1296 dbSNP
rs529299397 1310 dbSNP
rs1345241756 1318 dbSNP
rs7530222 1319 dbSNP
rs1209795761 1323 dbSNP
rs1486506795 1337 dbSNP
rs1322743167 1339 dbSNP
rs1278703490 1345 dbSNP
rs1262831871 1346 dbSNP
rs1432797868 1359 dbSNP
rs529078895 1363 dbSNP
rs896227880 1364 dbSNP
rs1056188788 1373 dbSNP
rs1407047895 1385 dbSNP
rs902217727 1393 dbSNP
rs1468236417 1412 dbSNP
rs1308090813 1416 dbSNP
rs1234291978 1417 dbSNP
rs1169054992 1420 dbSNP
rs1476670623 1423 dbSNP
rs1332345798 1425 dbSNP
rs1371738568 1427 dbSNP
rs1005142005 1429 dbSNP
rs141817844 1431 dbSNP
rs1048995448 1434 dbSNP
rs1461517812 1443 dbSNP
rs1386117188 1455 dbSNP
rs571280600 1457 dbSNP
rs1460536913 1464 dbSNP
rs896713949 1471 dbSNP
rs1216299417 1483 dbSNP
rs1299797728 1486 dbSNP
rs930553043 1493 dbSNP
rs1417646655 1495 dbSNP
rs1360063028 1518 dbSNP
rs1383806654 1521 dbSNP
rs1174533240 1530 dbSNP
rs1467607018 1533 dbSNP
rs778629066 1534 dbSNP
rs1405522633 1537 dbSNP
rs1198296384 1544 dbSNP
rs1039011274 1547 dbSNP
rs944687826 1551 dbSNP
rs1394901027 1555 dbSNP
rs1167706503 1559 dbSNP
rs756765732 1564 dbSNP
rs543374930 1567 dbSNP
rs753418511 1584 dbSNP
rs929367384 1587 dbSNP
rs988890451 1597 dbSNP
rs1443599983 1602 dbSNP
rs934849749 1605 dbSNP
rs1488168645 1606 dbSNP
rs976026270 1611 dbSNP
rs1284812559 1614 dbSNP
rs965283094 1621 dbSNP
rs926099024 1624 dbSNP
rs111674418 1625 dbSNP
rs970296199 1637 dbSNP
rs985331040 1638 dbSNP
rs1231970061 1656 dbSNP
rs1312638191 1672 dbSNP
rs1244105243 1673 dbSNP
rs1382276665 1689 dbSNP
rs1307950385 1691 dbSNP
rs751972732 1692 dbSNP
rs1397866698 1693 dbSNP
rs1334528507 1699 dbSNP
rs954048781 1706 dbSNP
rs609070 1707 dbSNP
rs1397972637 1715 dbSNP
rs1001026925 1716 dbSNP
rs990493766 1718 dbSNP
rs1423632167 1738 dbSNP
rs1408214194 1739 dbSNP
rs761303151 1743 dbSNP
rs1178435857 1751 dbSNP
rs1468105222 1753 dbSNP
rs1231801353 1766 dbSNP
rs1400416110 1769 dbSNP
rs1172054528 1773 dbSNP
rs1021056152 1778 dbSNP
rs1221392036 1782 dbSNP
rs1462575033 1783 dbSNP
rs1426324256 1784 dbSNP
rs1285153845 1789 dbSNP
rs1348720140 1790 dbSNP
rs778519048 1790 dbSNP
rs1347889030 1795 dbSNP
rs1406148768 1795 dbSNP
rs1169197719 1797 dbSNP
rs1477670191 1800 dbSNP
rs1356786422 1801 dbSNP
rs1345431988 1804 dbSNP
rs1025569950 1805 dbSNP
rs1398588768 1806 dbSNP
rs745810715 1806 dbSNP
rs762025593 1806 dbSNP
rs754662734 1807 dbSNP
rs1176490750 1808 dbSNP
rs761823903 1808 dbSNP
rs1198441248 1809 dbSNP
rs1266631609 1809 dbSNP
rs1013237281 1810 dbSNP
rs1243632979 1810 dbSNP
rs1486107512 1810 dbSNP
rs1224157945 1812 dbSNP
rs1326287076 1816 dbSNP
rs1281865997 1819 dbSNP
rs201129964 1819 dbSNP
rs71062891 1819 dbSNP
rs1306395381 1820 dbSNP
rs1363355882 1820 dbSNP
rs1258625191 1823 dbSNP
rs1190135501 1827 dbSNP
rs1443775883 1831 dbSNP
rs1426578587 1857 dbSNP
rs620296 1863 dbSNP
rs186998662 1864 dbSNP
rs1339524603 1866 dbSNP
rs1421456106 1869 dbSNP
rs1259861284 1870 dbSNP
rs1485035154 1881 dbSNP
rs1216701956 1886 dbSNP
rs1002453228 1887 dbSNP
rs960379048 1890 dbSNP
rs1210078801 1897 dbSNP
rs534295675 1902 dbSNP
rs1049194678 1905 dbSNP
rs1338860354 1911 dbSNP
rs1035205731 1914 dbSNP
rs1004622535 1915 dbSNP
rs1454244546 1928 dbSNP
rs1391996761 1933 dbSNP
rs1403323780 1935 dbSNP
rs144795256 1951 dbSNP
rs767828773 1965 dbSNP
rs551861142 1973 dbSNP
rs1027440485 1983 dbSNP
rs919325671 1984 dbSNP
rs1329447151 1987 dbSNP
rs994587918 1995 dbSNP
rs1427644625 1996 dbSNP
rs866181753 1999 dbSNP
rs1385617938 2000 dbSNP
rs182021554 2006 dbSNP
rs1446637767 2010 dbSNP
rs1038901000 2014 dbSNP
rs1199891606 2017 dbSNP
rs944725737 2019 dbSNP
rs890444769 2025 dbSNP
rs1053642706 2027 dbSNP
rs934755586 2045 dbSNP
rs926149950 2046 dbSNP
rs553161987 2050 dbSNP
rs1247785258 2051 dbSNP
rs1380063711 2060 dbSNP
rs1311428463 2064 dbSNP
rs149185937 2077 dbSNP
rs985383408 2083 dbSNP
rs1429021669 2088 dbSNP
rs1366002679 2094 dbSNP
rs916183720 2095 dbSNP
rs993077200 2098 dbSNP
rs1457975514 2115 dbSNP
rs144966764 2133 dbSNP
rs1034682649 2135 dbSNP
rs983644131 2139 dbSNP
rs531543278 2140 dbSNP
rs149902726 2148 dbSNP
rs774371380 2149 dbSNP
rs1252735509 2159 dbSNP
rs925117620 2161 dbSNP
rs1483004851 2162 dbSNP
rs1457250837 2166 dbSNP
rs1270084208 2188 dbSNP
rs1027323558 2189 dbSNP
rs1225133949 2193 dbSNP
rs1356829918 2197 dbSNP
rs1264439368 2205 dbSNP
rs1239302840 2210 dbSNP
rs577647109 2212 dbSNP
rs542413181 2214 dbSNP
rs572217117 2222 dbSNP
rs900323426 2225 dbSNP
rs1211340147 2228 dbSNP
rs1017500529 2229 dbSNP
rs1354031538 2234 dbSNP
rs1283766994 2241 dbSNP
rs1304760433 2249 dbSNP
rs780036831 2255 dbSNP
rs1008804582 2265 dbSNP
rs1402794260 2279 dbSNP
rs35253145 2317 dbSNP
rs890488385 2319 dbSNP
rs1053123589 2322 dbSNP
rs999224258 2327 dbSNP
rs1454476347 2337 dbSNP
rs1379444743 2344 dbSNP
rs966882886 2357 dbSNP
rs1020743372 2358 dbSNP
rs1446149617 2367 dbSNP
rs1013331783 2369 dbSNP
rs539123596 2371 dbSNP
rs146650981 2374 dbSNP
rs1205395445 2380 dbSNP
rs1486629678 2381 dbSNP
rs1258457407 2394 dbSNP
rs1002463333 2397 dbSNP
rs1324187138 2404 dbSNP
rs1285049054 2405 dbSNP
rs1221595904 2410 dbSNP
rs948889398 2412 dbSNP
rs1330367344 2417 dbSNP
rs1318705588 2428 dbSNP
rs536705820 2434 dbSNP
rs1383017387 2440 dbSNP
rs143494039 2449 dbSNP
rs1318628074 2459 dbSNP
rs1057513144 2461 dbSNP
rs1381840553 2463 dbSNP
rs1179295986 2471 dbSNP
rs115417360 2481 dbSNP
rs571585785 2492 dbSNP
rs1477307439 2502 dbSNP
rs139953459 2508 dbSNP
rs897976524 2522 dbSNP
rs773313900 2526 dbSNP
rs1438540856 2538 dbSNP
rs1194285406 2544 dbSNP
rs1429961559 2556 dbSNP
rs538529146 2563 dbSNP
rs1207567712 2568 dbSNP
rs1461422575 2575 dbSNP
rs1264450487 2579 dbSNP
rs1201750312 2582 dbSNP
rs1040469937 2583 dbSNP
rs1270586768 2584 dbSNP
rs944791632 2586 dbSNP
rs768552473 2587 dbSNP
rs1328441540 2592 dbSNP
rs1295751614 2593 dbSNP
rs574432329 2598 dbSNP
rs1406977348 2600 dbSNP
rs1338756068 2602 dbSNP
rs1223706024 2619 dbSNP
rs556027672 2636 dbSNP
rs910556657 2638 dbSNP
rs534090608 2647 dbSNP
rs1476558850 2650 dbSNP
rs1388688944 2653 dbSNP
rs1187609132 2654 dbSNP
rs375988658 2655 dbSNP
rs1184732922 2665 dbSNP
rs897846705 2669 dbSNP
rs1273559563 2682 dbSNP
rs551553647 2695 dbSNP
rs539571350 2696 dbSNP
rs57220608 2698 dbSNP
rs973109781 2704 dbSNP
rs979742650 2713 dbSNP
rs191456058 2715 dbSNP
rs370462989 2717 dbSNP
rs529255860 2729 dbSNP
rs746973000 2730 dbSNP
rs560986407 2740 dbSNP
rs186653891 2756 dbSNP
rs779890645 2758 dbSNP
rs1369136826 2764 dbSNP
rs1168304091 2773 dbSNP
rs1424939797 2774 dbSNP
rs1386640293 2775 dbSNP
rs527467577 2786 dbSNP
rs11264195 2789 dbSNP
rs1472211900 2791 dbSNP
rs1183956285 2805 dbSNP
rs1482020963 2807 dbSNP
rs1250827884 2814 dbSNP
rs757325593 2819 dbSNP
rs1360442929 2825 dbSNP
rs1292221080 2835 dbSNP
rs1421916398 2836 dbSNP
rs1355811027 2841 dbSNP
rs1043191778 2846 dbSNP
rs1263860863 2850 dbSNP
rs1012997513 2856 dbSNP
rs894686177 2858 dbSNP
rs1405875984 2871 dbSNP
rs1057301345 2878 dbSNP
rs1033357687 2882 dbSNP
rs1001853238 2889 dbSNP
rs1361988494 2892 dbSNP
rs1027935939 2894 dbSNP
rs562040201 2894 dbSNP
rs938813199 2901 dbSNP
rs994148906 2903 dbSNP
rs908805116 2906 dbSNP
rs1418508117 2923 dbSNP
rs1019032615 2925 dbSNP
rs573065494 2935 dbSNP
rs1244756383 2937 dbSNP
rs146005131 2948 dbSNP
rs1451227345 2955 dbSNP
rs1285086492 2956 dbSNP
rs1230236314 2958 dbSNP
rs562463913 2959 dbSNP
rs1288338038 2964 dbSNP
rs1246068794 2971 dbSNP
rs181291808 2973 dbSNP
rs936041699 2978 dbSNP
rs1435337547 2980 dbSNP
rs973163570 2984 dbSNP
rs1319721363 2986 dbSNP
rs1455132677 2991 dbSNP
rs1261241511 2992 dbSNP
rs1043685019 2994 dbSNP
rs1177145073 2994 dbSNP
rs1216141038 3003 dbSNP
rs1313044378 3006 dbSNP
rs964429097 3008 dbSNP
rs1190360450 3016 dbSNP
rs1477827118 3018 dbSNP
rs573590633 3029 dbSNP
rs1280825727 3038 dbSNP
rs555749534 3044 dbSNP
rs1210811013 3059 dbSNP
rs987330399 3060 dbSNP
rs376892752 3061 dbSNP
rs939100845 3070 dbSNP
rs1031607491 3078 dbSNP
rs573333270 3081 dbSNP
rs977322975 3086 dbSNP
rs1298023005 3093 dbSNP
rs968739350 3096 dbSNP
rs1299438955 3105 dbSNP
rs1398972317 3112 dbSNP
rs1432434516 3121 dbSNP
rs141747656 3134 dbSNP
rs980916574 3135 dbSNP
rs942146927 3139 dbSNP
rs889195605 3149 dbSNP
rs1051070918 3156 dbSNP
rs1412266658 3158 dbSNP
rs1424328688 3159 dbSNP
rs57561208 3159 dbSNP
rs1027731635 3165 dbSNP
rs1190794874 3166 dbSNP
rs972346197 3168 dbSNP
rs1478792542 3169 dbSNP
rs77749164 3170 dbSNP
rs1019084955 3171 dbSNP
rs202083923 3171 dbSNP
rs1008998207 3172 dbSNP
rs1308512622 3172 dbSNP
rs1192759854 3173 dbSNP
rs1225784405 3173 dbSNP
rs1315176979 3174 dbSNP
rs1222789867 3176 dbSNP
rs1284565821 3176 dbSNP
rs1302263117 3176 dbSNP
rs1372236828 3176 dbSNP
rs1376329048 3176 dbSNP
rs1442797121 3176 dbSNP
rs369315983 3176 dbSNP
rs1029110617 3177 dbSNP
rs1000683595 3180 dbSNP
rs1021632345 3180 dbSNP
rs904523909 3181 dbSNP
rs1042075437 3182 dbSNP
rs539533419 3183 dbSNP
rs1259207060 3185 dbSNP
rs1220980024 3186 dbSNP
rs1246528175 3187 dbSNP
rs1489292481 3187 dbSNP
rs988403797 3187 dbSNP
rs1224296949 3193 dbSNP
rs1352216543 3194 dbSNP
rs1012882790 3195 dbSNP
rs568965996 3196 dbSNP
rs1305962480 3202 dbSNP
rs1408928438 3206 dbSNP
rs1365945865 3207 dbSNP
rs1294403243 3210 dbSNP
rs758896720 3212 dbSNP
rs188488296 3213 dbSNP
rs535426247 3215 dbSNP
rs1164112345 3217 dbSNP
rs373621945 3231 dbSNP
rs144306073 3236 dbSNP
rs527617715 3237 dbSNP
rs1180635539 3260 dbSNP
rs1003060172 3265 dbSNP
rs1056375648 3271 dbSNP
rs1270012071 3280 dbSNP
rs1211318167 3297 dbSNP
rs887258282 3298 dbSNP
rs1264388431 3304 dbSNP
rs566540137 3304 dbSNP
rs1239059364 3305 dbSNP
rs1331150769 3308 dbSNP
rs939195634 3311 dbSNP
rs1304263157 3312 dbSNP
rs926435724 3319 dbSNP
rs1047339620 3328 dbSNP
rs1345951561 3336 dbSNP
rs980587199 3339 dbSNP
rs1404694048 3340 dbSNP
rs753365476 3348 dbSNP
rs113134659 3361 dbSNP
rs898877000 3368 dbSNP
rs1467121776 3370 dbSNP
rs920283124 3374 dbSNP
rs1421466815 3378 dbSNP
rs1457891280 3379 dbSNP
rs1390920708 3385 dbSNP
rs1157640552 3403 dbSNP
rs1037332219 3407 dbSNP
rs1424178647 3411 dbSNP
rs943004472 3416 dbSNP
rs910316302 3420 dbSNP
rs1201414512 3422 dbSNP
rs1416173999 3422 dbSNP
rs987603651 3444 dbSNP
rs1266161561 3453 dbSNP
rs111666288 3456 dbSNP
rs1205337682 3458 dbSNP
rs962290013 3462 dbSNP
rs1019181042 3463 dbSNP
rs1472620058 3469 dbSNP
rs933196191 3470 dbSNP
rs1208079440 3478 dbSNP
rs1238833676 3480 dbSNP
rs924431566 3487 dbSNP
rs953583329 3491 dbSNP
rs1029534447 3492 dbSNP
rs1257984882 3493 dbSNP
rs1000292083 3495 dbSNP
rs977375046 3509 dbSNP
rs969177443 3513 dbSNP
rs1457210158 3515 dbSNP
rs968624954 3518 dbSNP
rs1021515923 3520 dbSNP
rs551648819 3521 dbSNP
rs1226230718 3522 dbSNP
rs533164529 3523 dbSNP
rs1003458777 3525 dbSNP
rs1056428934 3525 dbSNP
rs1450914878 3525 dbSNP
rs958931787 3525 dbSNP
rs1187340666 3529 dbSNP
rs1035801357 3533 dbSNP
rs1442937306 3537 dbSNP
rs905029054 3538 dbSNP
rs1003358735 3540 dbSNP
rs1309339180 3553 dbSNP
rs1251651971 3561 dbSNP
rs1229442418 3562 dbSNP
rs373776338 3563 dbSNP
rs1295504665 3566 dbSNP
rs920316783 3567 dbSNP
rs1434394853 3569 dbSNP
rs1397937577 3570 dbSNP
rs1297568026 3572 dbSNP
rs1036095713 3574 dbSNP
rs887319275 3581 dbSNP
rs1401997620 3588 dbSNP
rs1169563253 3596 dbSNP
rs562527486 3603 dbSNP
rs1423457923 3604 dbSNP
rs1381213509 3616 dbSNP
rs1238671786 3620 dbSNP
rs987683719 3626 dbSNP
rs953594267 3632 dbSNP
rs1180521294 3653 dbSNP
rs1308582003 3662 dbSNP
rs1252312261 3665 dbSNP
rs1206950862 3675 dbSNP
rs544339534 3676 dbSNP
rs528853606 3688 dbSNP
rs1272828252 3699 dbSNP
rs183767527 3701 dbSNP
rs1214202328 3710 dbSNP
rs922135016 3711 dbSNP
rs1489777867 3719 dbSNP
rs536474136 3724 dbSNP
rs1039904651 3739 dbSNP
rs1221374268 3752 dbSNP
rs1340349491 3759 dbSNP
rs935552035 3765 dbSNP
rs1309022900 3775 dbSNP
rs1411999667 3781 dbSNP
rs1286295853 3787 dbSNP
rs1241630377 3804 dbSNP
rs1369080082 3808 dbSNP
rs968895125 3812 dbSNP
rs1405573169 3814 dbSNP
rs1415359708 3820 dbSNP
rs888762293 3821 dbSNP
rs1412553358 3833 dbSNP
rs1020815867 3835 dbSNP
rs1481990895 3837 dbSNP
rs1051556429 3843 dbSNP
rs1204148589 3844 dbSNP
rs1010316851 3849 dbSNP
rs933061608 3853 dbSNP
rs924345432 3855 dbSNP
rs868439925 3864 dbSNP
rs753211105 3865 dbSNP
rs1208069040 3866 dbSNP
rs1334781270 3873 dbSNP
rs947173522 3874 dbSNP
rs1230767749 3881 dbSNP
rs540551803 3891 dbSNP
rs1288064749 3896 dbSNP
rs1345281802 3910 dbSNP
rs1436791908 3914 dbSNP
rs1351193092 3919 dbSNP
rs1321030316 3929 dbSNP
rs1361369332 3935 dbSNP
rs914508243 3939 dbSNP
rs370495540 3940 dbSNP
rs1003470107 3941 dbSNP
rs573520050 3967 dbSNP
rs1388729183 3971 dbSNP
rs905081031 3978 dbSNP
rs1471554877 3986 dbSNP
rs1418154417 4020 dbSNP
rs567674968 4029 dbSNP
rs1044924751 4047 dbSNP
rs1176968701 4049 dbSNP
rs180822351 4055 dbSNP
rs1197006318 4061 dbSNP
rs573745578 4062 dbSNP
rs558035881 4072 dbSNP
rs898987622 4075 dbSNP
rs1036107383 4089 dbSNP
rs1284013592 4092 dbSNP
rs545950971 4094 dbSNP
rs940403454 4096 dbSNP
rs958764405 4101 dbSNP
rs1272787543 4102 dbSNP
rs1439671194 4104 dbSNP
rs1488837599 4106 dbSNP
rs1263390769 4119 dbSNP
rs928620891 4122 dbSNP
rs1218308354 4124 dbSNP
rs1351100687 4129 dbSNP
rs1051341949 4135 dbSNP
rs1259623643 4136 dbSNP
rs1416018227 4145 dbSNP
rs932269553 4149 dbSNP
rs190645289 4157 dbSNP
rs1453954731 4163 dbSNP
rs1248760278 4165 dbSNP
rs1313823546 4177 dbSNP
rs951551520 4179 dbSNP
rs1242108218 4182 dbSNP
rs557009395 4195 dbSNP
rs979023036 4201 dbSNP
rs1314352034 4209 dbSNP
rs1025650816 4220 dbSNP
rs1276923572 4234 dbSNP
rs115579550 4235 dbSNP
rs1342382621 4243 dbSNP
rs962829251 4244 dbSNP
rs1340874442 4251 dbSNP
rs1432188916 4251 dbSNP
rs568348622 4253 dbSNP
rs1299850610 4254 dbSNP
rs1398381343 4259 dbSNP
rs1018506410 4273 dbSNP
rs766550270 4279 dbSNP
rs913396977 4281 dbSNP
rs1384601965 4284 dbSNP
rs553372239 4285 dbSNP
rs888825764 4289 dbSNP
rs138307400 4295 dbSNP
rs1035708115 4309 dbSNP
rs1390957790 4317 dbSNP
rs1376392283 4327 dbSNP
rs1176360479 4330 dbSNP
rs997157105 4338 dbSNP
rs1447808407 4347 dbSNP
rs980076609 4355 dbSNP
rs902946398 4361 dbSNP
rs1484495060 4366 dbSNP
rs1041462360 4374 dbSNP
rs1236112885 4374 dbSNP
rs1210526547 4376 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Cardiac Tissues
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM2202479. RNA binding protein: AGO2. Condition:S4_LV_29yo_Male_AGO2_bound_RNA ...

- Spengler RM; Zhang X; Cheng C; McLendon JM; et al., 2016, Nucleic acids research.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucucguucuggggcaGAGAUUu 5'
                         |||||| 
Target 5' -------------aaCUCUAAa 3'
1 - 9
Article - Spengler RM; Zhang X; Cheng C; McLendon JM; et al.
- Nucleic acids research, 2016
MicroRNAs (miRs) have emerged as key biological effectors in human health and disease. These small noncoding RNAs are incorporated into Argonaute (Ago) proteins, where they direct post-transcriptional gene silencing via base-pairing with target transcripts. Although miRs have become intriguing biological entities and attractive therapeutic targets, the translational impacts of miR research remain limited by a paucity of empirical miR targeting data, particularly in human primary tissues. Here, to improve our understanding of the diverse roles miRs play in cardiovascular function and disease, we applied high-throughput methods to globally profile miR:target interactions in human heart tissues. We deciphered Ago2:RNA interactions using crosslinking immunoprecipitation coupled with high-throughput sequencing (HITS-CLIP) to generate the first transcriptome-wide map of miR targeting events in human myocardium, detecting 4000 cardiac Ago2 binding sites across >2200 target transcripts. Our initial exploration of this interactome revealed an abundance of miR target sites in gene coding regions, including several sites pointing to new miR-29 functions in regulating cardiomyocyte calcium, growth and metabolism. Also, we uncovered several clinically-relevant interactions involving common genetic variants that alter miR targeting events in cardiomyopathy-associated genes. Overall, these data provide a critical resource for bolstering translational miR research in heart, and likely beyond.
LinkOut: [PMID: 27418678]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000318121.3 | 3UTR | UCUCUACUAAAAAUACAAAAAUCAGCCAGGCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28260 Renal cortex and medulla 0.784 7.6e-4 0.846 1.3e-4 13 Click to see details
GSE42095 Differentiated embryonic stem cells 0.591 1.5e-3 0.643 4.7e-4 23 Click to see details
GSE32688 Pancreatic cancer 0.138 2.3e-1 0.143 2.2e-1 32 Click to see details
GSE26953 Aortic valvular endothelial cells 0.148 2.5e-1 0.089 3.4e-1 24 Click to see details
GSE28544 Breast cancer 0.082 3.5e-1 0.075 3.6e-1 24 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.037 4.3e-1 0.099 3.2e-1 25 Click to see details
GSE38226 Liver fibrosis 0.035 4.4e-1 0.365 5.2e-2 21 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
186 hsa-miR-1303 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035871 SOAT1 sterol O-acyltransferase 1 1 1
MIRT035872 FHOD3 formin homology 2 domain containing 3 1 1
MIRT035873 RPL7A ribosomal protein L7a 1 1
MIRT035874 NCAPD2 non-SMC condensin I complex subunit D2 1 1
MIRT035875 RPS8 ribosomal protein S8 1 1
MIRT035876 AHNAK AHNAK nucleoprotein 1 1
MIRT035877 ACTB actin beta 1 1
MIRT035878 DEF8 differentially expressed in FDCP 8 homolog 1 1
MIRT035879 MET MET proto-oncogene, receptor tyrosine kinase 1 1
MIRT035880 MED13 mediator complex subunit 13 1 1
MIRT035881 FAT3 FAT atypical cadherin 3 1 1
MIRT035882 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 1 1
MIRT035883 RPS16 ribosomal protein S16 1 1
MIRT035884 CDK6 cyclin dependent kinase 6 1 1
MIRT035885 GEMIN5 gem nuclear organelle associated protein 5 1 1
MIRT035886 PITRM1 pitrilysin metallopeptidase 1 1 1
MIRT035887 PRRC2A proline rich coiled-coil 2A 1 1
MIRT035888 KIAA0226 RUN and cysteine rich domain containing beclin 1 interacting protein 1 1
MIRT035889 MLLT6 MLLT6, PHD finger containing 1 1
MIRT035890 EIF3I eukaryotic translation initiation factor 3 subunit I 1 1
MIRT035891 FASN fatty acid synthase 1 1
MIRT035892 LEPREL4 prolyl 3-hydroxylase family member 4 (non-enzymatic) 1 1
MIRT035893 HSCB HscB mitochondrial iron-sulfur cluster cochaperone 1 1
MIRT035894 PSME4 proteasome activator subunit 4 1 1
MIRT035895 FRS2 fibroblast growth factor receptor substrate 2 1 1
MIRT035896 ZNF264 zinc finger protein 264 1 1
MIRT035897 HYLS1 HYLS1, centriolar and ciliogenesis associated 1 1
MIRT035898 USP54 ubiquitin specific peptidase 54 1 1
MIRT035899 L1TD1 LINE1 type transposase domain containing 1 1 1
MIRT035900 OR51E2 olfactory receptor family 51 subfamily E member 2 1 1
MIRT053762 CLDN18 claudin 18 3 1
MIRT060730 RPS3 ribosomal protein S3 2 2
MIRT083986 RAB22A RAB22A, member RAS oncogene family 2 2
MIRT098550 TBPL1 TATA-box binding protein like 1 2 6
MIRT134983 TWF1 twinfilin actin binding protein 1 2 4
MIRT136956 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT222065 PURB purine rich element binding protein B 2 2
MIRT239574 UBN2 ubinuclein 2 2 4
MIRT261820 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT264698 C11ORF57 chromosome 11 open reading frame 57 2 4
MIRT308476 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT377481 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT442304 NEU3 neuraminidase 3 2 2
MIRT446083 SLC30A10 solute carrier family 30 member 10 2 2
MIRT449606 PRPF4 pre-mRNA processing factor 4 2 2
MIRT453767 NUCB1 nucleobindin 1 2 10
MIRT455603 SRSF3 serine and arginine rich splicing factor 3 2 2
MIRT455913 KIF2C kinesin family member 2C 2 2
MIRT460091 ZYG11B zyg-11 family member B, cell cycle regulator 2 4
MIRT460866 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT461339 NUP133 nucleoporin 133 2 2
MIRT463769 YOD1 YOD1 deubiquitinase 2 2
MIRT466368 THAP1 THAP domain containing 1 2 4
MIRT467168 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT468703 SDHD succinate dehydrogenase complex subunit D 2 2
MIRT469122 RNF126 ring finger protein 126 2 2
MIRT472426 NCBP2 nuclear cap binding protein subunit 2 2 4
MIRT479420 CDKN1B cyclin dependent kinase inhibitor 1B 2 8
MIRT484260 FAM177A1 family with sequence similarity 177 member A1 2 2
MIRT485468 IL6ST interleukin 6 signal transducer 2 10
MIRT490237 H2AFZ H2A histone family member Z 2 6
MIRT491002 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT492127 SUMO2 small ubiquitin-like modifier 2 2 2
MIRT499169 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT499825 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT501794 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT503441 GINS4 GINS complex subunit 4 2 4
MIRT503688 MAVS mitochondrial antiviral signaling protein 2 5
MIRT506926 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT511430 HOXA10 homeobox A10 2 6
MIRT512415 LAYN layilin 2 4
MIRT513791 NIPAL3 NIPA like domain containing 3 2 4
MIRT516163 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 4
MIRT516513 PARK2 parkin RBR E3 ubiquitin protein ligase 2 2
MIRT516915 HINFP histone H4 transcription factor 2 2
MIRT517102 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT517350 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT518019 ABHD15 abhydrolase domain containing 15 2 2
MIRT520945 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT525250 RNF213 ring finger protein 213 2 2
MIRT530634 PPIC peptidylprolyl isomerase C 2 4
MIRT530671 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531563 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT538205 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT538419 COLEC10 collectin subfamily member 10 2 2
MIRT541964 ZNF485 zinc finger protein 485 2 2
MIRT543088 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT543257 ZNF662 zinc finger protein 662 2 2
MIRT543589 KIAA1549 KIAA1549 2 2
MIRT543955 RNF20 ring finger protein 20 2 2
MIRT544043 C9orf64 chromosome 9 open reading frame 64 2 4
MIRT548064 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548240 FBXW7 F-box and WD repeat domain containing 7 2 2
MIRT548442 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT548623 DAZAP1 DAZ associated protein 1 2 4
MIRT548770 COLEC12 collectin subfamily member 12 2 2
MIRT549506 HDDC2 HD domain containing 2 2 4
MIRT551924 AKAP8 A-kinase anchoring protein 8 2 4
MIRT555656 PGRMC1 progesterone receptor membrane component 1 2 2
MIRT556286 MAP3K5 mitogen-activated protein kinase kinase kinase 5 2 2
MIRT557012 HOXD13 homeobox D13 2 4
MIRT563907 CLSPN claspin 2 2
MIRT565527 SON SON DNA binding protein 2 2
MIRT568000 COMMD2 COMM domain containing 2 2 2
MIRT569831 PLA2G16 phospholipase A2 group XVI 2 4
MIRT573905 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT616589 KLHL9 kelch like family member 9 2 2
MIRT617137 ZNF556 zinc finger protein 556 2 2
MIRT617400 API5 apoptosis inhibitor 5 2 2
MIRT617455 CCS copper chaperone for superoxide dismutase 2 2
MIRT617799 ZNF793 zinc finger protein 793 2 2
MIRT618190 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT618303 GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 2 2
MIRT618329 ZNF813 zinc finger protein 813 2 2
MIRT618820 PHF20 PHD finger protein 20 2 2
MIRT619153 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT619530 ZNF708 zinc finger protein 708 2 2
MIRT619849 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT620806 SLC26A2 solute carrier family 26 member 2 2 2
MIRT621312 YIPF4 Yip1 domain family member 4 2 2
MIRT621358 GUCA1B guanylate cyclase activator 1B 2 2
MIRT621366 ART4 ADP-ribosyltransferase 4 (Dombrock blood group) 2 2
MIRT621547 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT621883 TAOK1 TAO kinase 1 2 2
MIRT622451 RNF19B ring finger protein 19B 2 2
MIRT623404 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT623587 IPO9 importin 9 2 2
MIRT623974 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT624086 DPP8 dipeptidyl peptidase 8 2 2
MIRT624108 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT632486 RNF8 ring finger protein 8 2 2
MIRT634057 PLIN3 perilipin 3 2 2
MIRT634657 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT640682 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT641242 CENPN centromere protein N 2 2
MIRT642260 ZNF677 zinc finger protein 677 2 2
MIRT642954 RELA RELA proto-oncogene, NF-kB subunit 2 2
MIRT644326 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT644632 ICA1L islet cell autoantigen 1 like 2 2
MIRT645721 POLR3A RNA polymerase III subunit A 2 2
MIRT647850 LYPLA1 lysophospholipase I 2 2
MIRT649281 NEK8 NIMA related kinase 8 2 2
MIRT650038 VHL von Hippel-Lindau tumor suppressor 2 2
MIRT650354 RRP36 ribosomal RNA processing 36 2 2
MIRT651144 ZNF384 zinc finger protein 384 2 2
MIRT651778 UTP6 UTP6, small subunit processome component 2 2
MIRT652576 TLCD2 TLC domain containing 2 2 2
MIRT654621 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT656023 MYO5A myosin VA 2 2
MIRT656105 MSRB3 methionine sulfoxide reductase B3 2 2
MIRT657749 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT657924 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT658848 DUSP19 dual specificity phosphatase 19 2 2
MIRT659100 DENND6A DENN domain containing 6A 2 2
MIRT659153 DCX doublecortin 2 2
MIRT660870 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT661941 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT663577 C10orf32 BLOC-1 related complex subunit 7 2 2
MIRT664625 WDPCP WD repeat containing planar cell polarity effector 2 4
MIRT666562 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT669992 GPR156 G protein-coupled receptor 156 2 4
MIRT670445 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670853 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT671942 SPPL3 signal peptide peptidase like 3 2 2
MIRT674269 LMOD3 leiomodin 3 2 2
MIRT674424 MIOX myo-inositol oxygenase 2 4
MIRT674982 ATP5G1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) 2 2
MIRT675038 BACE2 beta-site APP-cleaving enzyme 2 2 4
MIRT675309 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT675641 TTPAL alpha tocopherol transfer protein like 2 2
MIRT688688 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT689369 ZNF101 zinc finger protein 101 2 2
MIRT689605 AKAP6 A-kinase anchoring protein 6 2 2
MIRT691715 LARS leucyl-tRNA synthetase 2 2
MIRT695473 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT695530 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT695878 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT696586 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT703007 HEATR5A HEAT repeat containing 5A 2 2
MIRT707942 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 2
MIRT709765 GPR183 G protein-coupled receptor 183 2 2
MIRT710332 ZNF669 zinc finger protein 669 2 2
MIRT713249 ZFP30 ZFP30 zinc finger protein 2 2
MIRT716613 RBM18 RNA binding motif protein 18 2 2
MIRT733414 BAG2 BCL2 associated athanogene 2 2 0
MIRT756135 THSD7A thrombospondin type 1 domain containing 7A 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-miR-1303 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-1303 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-1303 Rituximab sensitive High Diffuse Large B-Cell Lymphoma cell line (DB, NU-DHL-1, NU-DUL-1, MC-116, SU-DHL-4, SU-DHL-5, FARAGE, HBL-1, OCI-Ly3, OCI-Ly7, OCI-Ly8, OCI-Ly19, RIVA, SU-DHL-8, U2932)
hsa-miR-1303 Etoposide 36462 NSC141540 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vinorelbine 44424639 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vincristine 5978 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-mir-1303 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (W1)
hsa-mir-1303 Topotecan 60699 NSC609699 approved resistant cell line (W1)
hsa-mir-1303 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-1303 Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-1303 Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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