miRTarBase - #MIRT563974


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pre-miRNA Information
pre-miRNA hsa-mir-4480   
Genomic Coordinates chr10: 12578753 - 12578823
Description Homo sapiens miR-4480 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4480
Sequence 44| AGCCAAGUGGAAGUUACUUUA |64
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 1 10 + 12578796 23291724, 27587585 MiREDiBase
A-to-I 12 10 + 12578807 23291724, 27587585 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs929437808 7 dbSNP
rs1454494557 9 dbSNP
rs1345041659 17 dbSNP
rs561601367 21 dbSNP
Putative Targets

Gene Information
Gene Symbol HCFC1   
Synonyms CFF, HCF, HCF-1, HCF1, HFC1, MRX3, PPP1R89, VCAF
Description host cell factor C1
Transcript NM_005334   
Expression
Putative miRNA Targets on HCFC1
3'UTR of HCFC1
(miRNA target sites are highlighted)		 
>HCFC1|NM_005334|3'UTR
   1 GAGGAAGCTGACTAGCCCCTGGATTCTTCTCCAGACCCCCCTGCTTCAGGAACACCCGCCAGGGCCCACCCCTCCCACCC
  81 CGTCCCAGCATTCGCACTTCACCCTCGCGAGCCGCTGTTCACTCCTCTCCCCTTTCTCTTTCTCTCTGTTTTTAAAATAA
 161 TCTAAAGAAAGCACATTTTACCATTGCTGTTGGGAGGAAGCAGAGGCAGATGGGAAAGCAGAGAGAGGAGCGCGCTTCCT
 241 TTCCTCCCCGCTGCCGCCCACCCTGGGGAGAGACTTTTGCGGGGAGGGAAGGCGGAGCTGAGGACAGCCAGCTCCGCCCT
 321 CCCAAGGCTGTGCGTTCCTGAGGGCCAGGTCGGGGGCAGGCATGGAGGGGAGGAAAGGCGTCCCTCTTGGCCCTCCCCAG
 401 AGTGGCTTTCCTGGCACCCTGGCCTGGGTGTCTGGTTCTGTTTTCTTTTCTTCCCCTTGTGTTTCCAGTCACCTAACTTC
 481 CCTTCCTCAGGCTCCCCCGGCCCACCCTGCTCAGTGACCCCACAGGAAGCTTACACATTTTCTCAGAGGCCTTTGTGCTC
 561 CCACCTCTTCTACCCTCCCCCTCTTCTTTCCCATTTTAAAAAAGAAAAGAAGGAAAAAGAAAAAAGGGGCAAGGAGCCCC
 641 GCGGCGGCCTGGGCAGCGCCTGTGCAGACCTCCCTGCAGGCCGCACTGCCAACTGCTGCATTTGTTGTGTTTTTTAGGTT
 721 GCAATTGGTGAAGTTCACACTTTCATTGTAATTTTAGCGTGTGGGGTTTTGTCCCTTTTTTGTTGTTGTTAGCTGTGTAC
 801 AGAATGTGTAATCTTTTTTCTTTTCTCTTTTTTTTGTTTTGTTTTGTTTTGTTTTTGTTTTTTTACTTTTTTCTTCTTGG
 881 CTAATTCTTGGCAGGGATCTTTCTGGAGGAAAAGCTGGGGCCAGCCAGGGCAGGAGAGGTGTGAAATCTGCCACGAGGGG
 961 CCTGCTGTTTGCCACCCAGCCCAACTTCCTGTTGCTGGCCCCTGCCCTCTGCCCTTTTGCCTGTCCTCAGGCCGCTGGAA
1041 CAAAGGAAGGACAGCTCATTCCTCATGGGCGATCACTCCGCATCTATAGGGTCGAGCCTAGGGGAGCTTGAGGGAGGGCT
1121 GGGGCCTCCTTGTCCTGGATTTCCAGCTCTCCCCATGCCCCCTCCCTGAGCACCACCGGCACCGCCTCCCAAACAGGGCT
1201 GCTGGTTTCCGCAGCCACTGCTCCACCTCCCCCAAATCGTCATGGAAAGGGTGGAGAATGGAGGGGAACCAGGCGTCCTT
1281 GGAGGCAGCTTGGGAGGGTGACTGTGTAGTGTCACCCACAAGGGAGGCTAGGGCAATGGAGCAGGCCACCAGCAGCAGCT
1361 GTGCAGCATGGAACTCAGGCCAGGCTCCGAGGCTGGGGGATCTGCTTGGAGTTTTCTGCCCCCCACCCCAAACTTCTGTC
1441 GAGGAGCAAGGCTTGCCAGCAAGTCAGAAGGATTTGAACCGAGCAGCCAATCTTTCCAGCCCTCCCCTACCGACCTCTGC
1521 CTGGAGACGCAGCAGCCTGTGTCCTCCAGGGCCTCTGGTTTGTTGTATTATAGTATATTTCGCTGTGGAAAATGTCACGT
1601 TTAGTCACCTTGGAGCCCACTCACCTGGTCCTGTTGTTTTACCCCATCCCTTCTCTCGCGCGCCTATTGATTTGTTTCTG
1681 AGGAGAGTACACCGTTCACTATTGTAGAGTAACCCCTGTGACTCAATATTACCATAGTGCGATGTCGTTTTGTGCTATTT
1761 TGAACAATTAAAAGACTTTTTTTGAAATAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' auuUCAUUGAAGGUGAACCGa 5'
             | |  :|||: |||||| 
Target 5' tttACTTTTTTCTTCTTGGCt 3'
 862 - 882 126.00 -12.40
2 
miRNA  3' auUUCAUU--G-AAGGUGAACCGa 5'
            |:| ||  | | || |||||| 
Target 5' ggAGGAAAGGCGTCCCTCTTGGCc 3'
 369 - 392 125.00 -13.00
3 
miRNA  3' auuucauugaAGGUGAACCga 5'
                    ||::|||||  
Target 5' ggctgggggaTCTGCTTGGag 3'
 1391 - 1411 115.00 -10.10
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1290517857 6 dbSNP
rs782487620 13 dbSNP
rs781842596 16 dbSNP
rs781959210 18 dbSNP
rs782341884 31 dbSNP
rs200977867 36 dbSNP
rs782562347 38 dbSNP
rs782193068 39 dbSNP
rs782580091 40 dbSNP
rs376415254 41 dbSNP
rs782582376 42 dbSNP
rs781825015 44 dbSNP
rs201770950 50 dbSNP
rs985262570 57 dbSNP
rs782067975 58 dbSNP
rs369085959 60 dbSNP
rs1245419895 62 dbSNP
rs868918252 68 dbSNP
rs1175163411 72 dbSNP
rs781953961 73 dbSNP
rs782735671 77 dbSNP
rs1160675008 81 dbSNP
rs1427036290 82 dbSNP
rs1026696788 84 dbSNP
rs1337132443 85 dbSNP
rs1408089770 86 dbSNP
rs1440248248 87 dbSNP
rs1297778476 93 dbSNP
rs1374353952 94 dbSNP
rs1225477214 97 dbSNP
rs868931670 101 dbSNP
rs1281532562 104 dbSNP
rs782110869 106 dbSNP
rs1265355932 107 dbSNP
rs995254392 113 dbSNP
rs1204294424 115 dbSNP
rs1231899291 120 dbSNP
rs1480757800 123 dbSNP
rs1183707004 132 dbSNP
rs1266220019 148 dbSNP
rs1480056342 148 dbSNP
rs896942531 154 dbSNP
rs1015248517 160 dbSNP
rs1177114965 166 dbSNP
rs1427215606 170 dbSNP
rs1013695765 180 dbSNP
rs896048016 183 dbSNP
rs376304571 186 dbSNP
rs1057506052 194 dbSNP
rs782002402 196 dbSNP
rs112616756 209 dbSNP
rs1444712754 211 dbSNP
rs1301348425 212 dbSNP
rs1345016658 229 dbSNP
rs782421522 231 dbSNP
rs937469261 232 dbSNP
rs906036808 233 dbSNP
rs1214284254 234 dbSNP
rs1043239032 242 dbSNP
rs1274233867 244 dbSNP
rs947460773 246 dbSNP
rs782677123 249 dbSNP
rs1288920357 250 dbSNP
rs1490032020 251 dbSNP
rs1199534282 255 dbSNP
rs1248325728 265 dbSNP
rs1474386551 272 dbSNP
rs988803841 273 dbSNP
rs1185704733 279 dbSNP
rs1420027023 280 dbSNP
rs944049731 281 dbSNP
rs1161864263 282 dbSNP
rs782167941 285 dbSNP
rs1425316438 293 dbSNP
rs190463296 293 dbSNP
rs372260352 297 dbSNP
rs985377357 304 dbSNP
rs953984218 305 dbSNP
rs1325196366 314 dbSNP
rs782335180 315 dbSNP
rs782220083 326 dbSNP
rs148929219 327 dbSNP
rs868954584 329 dbSNP
rs1364572470 331 dbSNP
rs781801756 333 dbSNP
rs1358297245 334 dbSNP
rs72309166 335 dbSNP
rs201119463 336 dbSNP
rs58240020 336 dbSNP
rs868934062 336 dbSNP
rs868920846 338 dbSNP
rs1242669856 341 dbSNP
rs1451050400 348 dbSNP
rs1181539007 349 dbSNP
rs368703173 351 dbSNP
rs782269938 352 dbSNP
rs1382943028 353 dbSNP
rs1319510919 354 dbSNP
rs1391499913 357 dbSNP
rs1450830276 359 dbSNP
rs1314797887 362 dbSNP
rs1381576133 379 dbSNP
rs896141132 380 dbSNP
rs1033389119 381 dbSNP
rs1001732609 391 dbSNP
rs1285420690 393 dbSNP
rs906153342 400 dbSNP
rs1222733441 403 dbSNP
rs1043187336 417 dbSNP
rs1466203784 419 dbSNP
rs186799498 427 dbSNP
rs1242362098 428 dbSNP
rs1461923903 429 dbSNP
rs891850171 433 dbSNP
rs1362311971 445 dbSNP
rs1469647125 451 dbSNP
rs1159229074 470 dbSNP
rs782441833 472 dbSNP
rs1468760318 473 dbSNP
rs1336467764 485 dbSNP
rs1407352817 488 dbSNP
rs944014578 494 dbSNP
rs1398191407 495 dbSNP
rs1335730673 497 dbSNP
rs912552247 498 dbSNP
rs1237623359 499 dbSNP
rs1288505067 501 dbSNP
rs1331118870 505 dbSNP
rs1221665344 513 dbSNP
rs1262242369 518 dbSNP
rs1323939443 524 dbSNP
rs1049792284 529 dbSNP
rs1248617939 536 dbSNP
rs932543910 544 dbSNP
rs1182608332 560 dbSNP
rs1254141395 564 dbSNP
rs1479726288 565 dbSNP
rs1176290827 571 dbSNP
rs1430642700 581 dbSNP
rs1467852790 582 dbSNP
rs1166522171 588 dbSNP
rs781809506 604 dbSNP
rs1393873175 612 dbSNP
rs1390520496 613 dbSNP
rs919866154 620 dbSNP
rs973880542 625 dbSNP
rs1402591500 626 dbSNP
rs1282503683 629 dbSNP
rs1331624777 630 dbSNP
rs1235050935 633 dbSNP
rs1249466887 638 dbSNP
rs1338964427 640 dbSNP
rs1196649601 641 dbSNP
rs961518660 642 dbSNP
rs181164788 643 dbSNP
rs1198812771 645 dbSNP
rs782486230 646 dbSNP
rs1435491491 657 dbSNP
rs781851488 658 dbSNP
rs1372918483 662 dbSNP
rs992313733 665 dbSNP
rs1168794064 666 dbSNP
rs960519748 678 dbSNP
rs1033292440 683 dbSNP
rs782795993 686 dbSNP
rs1301994355 689 dbSNP
rs1368205254 692 dbSNP
rs970259371 693 dbSNP
rs1293145871 699 dbSNP
rs1325601222 701 dbSNP
rs1228900308 709 dbSNP
rs11798517 710 dbSNP
rs1357566543 711 dbSNP
rs782799907 713 dbSNP
rs1266171129 725 dbSNP
rs1489743258 727 dbSNP
rs891962304 743 dbSNP
rs189679385 745 dbSNP
rs1190920734 757 dbSNP
rs1391558635 764 dbSNP
rs1442467633 765 dbSNP
rs1162361483 773 dbSNP
rs1350012587 775 dbSNP
rs1459349962 782 dbSNP
rs1286999620 787 dbSNP
rs1384180792 791 dbSNP
rs782690244 801 dbSNP
rs891241182 806 dbSNP
rs1435459613 808 dbSNP
rs1049740660 813 dbSNP
rs1322375399 823 dbSNP
rs1245587937 825 dbSNP
rs1380845496 825 dbSNP
rs1313496258 827 dbSNP
rs1323542536 830 dbSNP
rs1236998924 836 dbSNP
rs1260587386 836 dbSNP
rs1465745942 836 dbSNP
rs1210959462 839 dbSNP
rs932659798 839 dbSNP
rs1241745269 840 dbSNP
rs1180963974 851 dbSNP
rs1459681940 851 dbSNP
rs200386587 851 dbSNP
rs782075324 855 dbSNP
rs1424983745 856 dbSNP
rs199659358 856 dbSNP
rs376191559 856 dbSNP
rs1156322106 857 dbSNP
rs1363153872 857 dbSNP
rs1457763396 862 dbSNP
rs1322276938 875 dbSNP
rs1403691169 876 dbSNP
rs1451692944 883 dbSNP
rs1303591838 890 dbSNP
rs1381629035 896 dbSNP
rs1389675349 899 dbSNP
rs782364701 904 dbSNP
rs1306464333 912 dbSNP
rs1330412004 930 dbSNP
rs919815233 954 dbSNP
rs1261623701 955 dbSNP
rs1323222814 958 dbSNP
rs1211284142 963 dbSNP
rs1237627018 965 dbSNP
rs1484068798 966 dbSNP
rs1174959576 967 dbSNP
rs1250498220 973 dbSNP
rs1161238667 989 dbSNP
rs1427144435 990 dbSNP
rs1469046134 994 dbSNP
rs1176527146 1000 dbSNP
rs1361106029 1001 dbSNP
rs1038294095 1014 dbSNP
rs1297658798 1020 dbSNP
rs1351227442 1021 dbSNP
rs1411775520 1033 dbSNP
rs1281875660 1034 dbSNP
rs1345441801 1036 dbSNP
rs1220173319 1041 dbSNP
rs782207104 1064 dbSNP
rs939989804 1070 dbSNP
rs184376794 1071 dbSNP
rs782010421 1074 dbSNP
rs1273510206 1078 dbSNP
rs375182280 1079 dbSNP
rs1483070737 1092 dbSNP
rs960717299 1093 dbSNP
rs143376688 1094 dbSNP
rs1191537983 1097 dbSNP
rs1427063967 1098 dbSNP
rs180969292 1102 dbSNP
rs967694945 1103 dbSNP
rs1371425376 1108 dbSNP
rs1431633271 1113 dbSNP
rs1301447987 1118 dbSNP
rs1365494952 1119 dbSNP
rs1437869672 1120 dbSNP
rs1276946613 1122 dbSNP
rs1360268031 1126 dbSNP
rs1214375724 1130 dbSNP
rs1296348128 1131 dbSNP
rs1021792673 1153 dbSNP
rs1012240608 1157 dbSNP
rs1206673338 1158 dbSNP
rs1289026466 1159 dbSNP
rs781904598 1160 dbSNP
rs1222267565 1162 dbSNP
rs1032244550 1172 dbSNP
rs1008420419 1177 dbSNP
rs891194674 1178 dbSNP
rs1187709999 1183 dbSNP
rs1391014338 1197 dbSNP
rs1451627706 1204 dbSNP
rs1161723901 1209 dbSNP
rs1028426134 1210 dbSNP
rs782345391 1211 dbSNP
rs1406062440 1219 dbSNP
rs1326056551 1220 dbSNP
rs1343966766 1222 dbSNP
rs1434736485 1223 dbSNP
rs996818546 1224 dbSNP
rs898493796 1230 dbSNP
rs1038411757 1232 dbSNP
rs939918270 1238 dbSNP
rs887053363 1239 dbSNP
rs1354990786 1243 dbSNP
rs1056676149 1252 dbSNP
rs782497557 1252 dbSNP
rs3027874 1274 dbSNP
rs781893076 1275 dbSNP
rs1207866003 1288 dbSNP
rs1248466290 1298 dbSNP
rs1466399179 1308 dbSNP
rs1181940159 1309 dbSNP
rs1237145215 1315 dbSNP
rs1473135365 1321 dbSNP
rs1165082517 1322 dbSNP
rs1406415526 1324 dbSNP
rs1457228112 1330 dbSNP
rs1160330824 1331 dbSNP
rs1391334260 1333 dbSNP
rs980491993 1343 dbSNP
rs946507962 1363 dbSNP
rs1331735670 1364 dbSNP
rs1339520091 1368 dbSNP
rs781969361 1376 dbSNP
rs41313422 1387 dbSNP
rs1227750734 1389 dbSNP
rs1268731456 1399 dbSNP
rs1330892322 1412 dbSNP
rs1201553664 1423 dbSNP
rs781891380 1425 dbSNP
rs956474550 1425 dbSNP
rs1189687804 1427 dbSNP
rs1231297902 1429 dbSNP
rs782677622 1440 dbSNP
rs1183482027 1441 dbSNP
rs1414867738 1447 dbSNP
rs1468511210 1448 dbSNP
rs1172365066 1456 dbSNP
rs1401037554 1459 dbSNP
rs1031934766 1464 dbSNP
rs1414734012 1464 dbSNP
rs1335583767 1472 dbSNP
rs1348044843 1473 dbSNP
rs1408716584 1481 dbSNP
rs1288848891 1494 dbSNP
rs1352263612 1502 dbSNP
rs1230792883 1507 dbSNP
rs1255248798 1509 dbSNP
rs1345948158 1512 dbSNP
rs1202434708 1515 dbSNP
rs1271182407 1528 dbSNP
rs782127536 1529 dbSNP
rs1205973301 1539 dbSNP
rs1254509261 1540 dbSNP
rs987349208 1544 dbSNP
rs1479780128 1567 dbSNP
rs1198572590 1570 dbSNP
rs1378617658 1577 dbSNP
rs1173921337 1582 dbSNP
rs1368333072 1598 dbSNP
rs782451867 1599 dbSNP
rs781808356 1617 dbSNP
rs1308184130 1620 dbSNP
rs1372312386 1622 dbSNP
rs1385055789 1624 dbSNP
rs1300292499 1630 dbSNP
rs955525107 1631 dbSNP
rs1331429271 1639 dbSNP
rs782752808 1642 dbSNP
rs996934128 1644 dbSNP
rs143302326 1648 dbSNP
rs1295602544 1657 dbSNP
rs782425910 1659 dbSNP
rs1205949900 1661 dbSNP
rs1276924313 1662 dbSNP
rs1489994498 1684 dbSNP
rs1004231350 1694 dbSNP
rs1268694091 1698 dbSNP
rs1453629664 1700 dbSNP
rs781864450 1705 dbSNP
rs887002837 1707 dbSNP
rs1191497920 1708 dbSNP
rs1387935230 1709 dbSNP
rs1056388060 1713 dbSNP
rs782252289 1714 dbSNP
rs782269381 1726 dbSNP
rs1455957770 1733 dbSNP
rs1292817861 1736 dbSNP
rs1391379300 1740 dbSNP
rs782579113 1741 dbSNP
rs939153750 1747 dbSNP
rs1229468037 1776 dbSNP
rs905026437 1788 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' auuucAUUGAAGGUGAACCGa 5'
               |||:|    |||||| 
Target 5' ----cUAAUU----CUUGGCa 3'
 		1 - 13
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000310441.7 | 3UTR | CUAAUUCUUGGCAGGGAUCUUUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
117 hsa-miR-4480 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT056040 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT091259 FXR1 FMR1 autosomal homolog 1 2 4
MIRT117347 MAPRE2 microtubule associated protein RP/EB family member 2 2 2
MIRT234960 ZNF439 zinc finger protein 439 2 4
MIRT441356 ZNF75A zinc finger protein 75a 2 2
MIRT441426 STXBP2 syntaxin binding protein 2 2 2
MIRT441455 ZNF488 zinc finger protein 488 2 4
MIRT441524 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT441576 EXOC5 exocyst complex component 5 2 2
MIRT441597 ABCB5 ATP binding cassette subfamily B member 5 2 6
MIRT441610 ATP13A4 ATPase 13A4 2 2
MIRT441698 CIT citron rho-interacting serine/threonine kinase 2 2
MIRT441714 FGF9 fibroblast growth factor 9 2 2
MIRT441784 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT441795 EXOSC2 exosome component 2 2 2
MIRT441868 RNASEL ribonuclease L 2 2
MIRT441900 SLC9A8 solute carrier family 9 member A8 2 6
MIRT441919 FAM217B family with sequence similarity 217 member B 2 2
MIRT441928 C1orf109 chromosome 1 open reading frame 109 2 2
MIRT441938 RIMKLB ribosomal modification protein rimK like family member B 2 2
MIRT442157 DPY19L1 dpy-19 like C-mannosyltransferase 1 2 2
MIRT442172 AZF1 azoospermia factor 1 2 2
MIRT442208 IRS1 insulin receptor substrate 1 2 2
MIRT442237 DDX19A DEAD-box helicase 19A 2 2
MIRT442366 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT442572 SDC1 syndecan 1 2 2
MIRT442604 ZNF391 zinc finger protein 391 2 2
MIRT442609 MRC1 mannose receptor C-type 1 2 2
MIRT442647 POP4 POP4 homolog, ribonuclease P/MRP subunit 2 2
MIRT442658 OIP5 Opa interacting protein 5 2 6
MIRT442686 COX15 COX15, cytochrome c oxidase assembly homolog 2 2
MIRT442773 JAG1 jagged 1 2 2
MIRT442785 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT442895 PLCB3 phospholipase C beta 3 2 2
MIRT442941 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT442959 SGCD sarcoglycan delta 2 2
MIRT442998 EDAR ectodysplasin A receptor 2 2
MIRT443017 C21orf91 chromosome 21 open reading frame 91 2 2
MIRT443064 CASP5 caspase 5 2 2
MIRT443069 ABLIM1 actin binding LIM protein 1 2 2
MIRT443208 VPS36 vacuolar protein sorting 36 homolog 2 2
MIRT443237 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443253 A1CF APOBEC1 complementation factor 2 2
MIRT443329 JUN Jun proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT443333 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT443349 STX7 syntaxin 7 2 2
MIRT443452 CLIC5 chloride intracellular channel 5 2 2
MIRT443547 GPR35 G protein-coupled receptor 35 2 2
MIRT443616 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT443626 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT443730 ALPK3 alpha kinase 3 2 2
MIRT443786 ST13 ST13, Hsp70 interacting protein 2 2
MIRT443852 RGS6 regulator of G protein signaling 6 2 2
MIRT445483 KLF5 Kruppel like factor 5 2 2
MIRT471105 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT472329 NETO2 neuropilin and tolloid like 2 2 4
MIRT472391 NDRG3 NDRG family member 3 2 2
MIRT473522 MAX MYC associated factor X 2 2
MIRT473874 MAFK MAF bZIP transcription factor K 2 6
MIRT476021 GTF2A1 general transcription factor IIA subunit 1 2 2
MIRT478320 DDN dendrin 2 2
MIRT492049 TNFSF9 TNF superfamily member 9 2 2
MIRT494851 ANKRD24 ankyrin repeat domain 24 2 2
MIRT494991 TSSC1 EARP complex and GARP complex interacting protein 1 2 2
MIRT495034 RASSF2 Ras association domain family member 2 2 2
MIRT495111 NOL10 nucleolar protein 10 2 2
MIRT495113 TRADD TNFRSF1A associated via death domain 2 2
MIRT495131 METTL24 methyltransferase like 24 2 2
MIRT495147 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT495297 NUP54 nucleoporin 54 2 2
MIRT495341 RTN2 reticulon 2 2 2
MIRT495347 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT496682 DUSP18 dual specificity phosphatase 18 2 2
MIRT496743 TGFBR1 transforming growth factor beta receptor 1 2 2
MIRT496841 KCNIP2 potassium voltage-gated channel interacting protein 2 2 2
MIRT496852 GPAM glycerol-3-phosphate acyltransferase, mitochondrial 2 2
MIRT496889 FOXP1 forkhead box P1 2 2
MIRT496922 CLMN calmin 2 2
MIRT496990 TMEM231 transmembrane protein 231 2 2
MIRT497002 SNAP25 synaptosome associated protein 25 2 2
MIRT497058 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT500529 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 6
MIRT506048 PPP6C protein phosphatase 6 catalytic subunit 2 4
MIRT512163 CD164 CD164 molecule 2 6
MIRT527051 RDH13 retinol dehydrogenase 13 2 2
MIRT532282 TNFSF14 TNF superfamily member 14 2 2
MIRT534083 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT534605 RNASEH1 ribonuclease H1 2 4
MIRT539509 ACSS3 acyl-CoA synthetase short chain family member 3 2 2
MIRT543069 ARID4B AT-rich interaction domain 4B 2 2
MIRT544233 CCBL2 kynurenine aminotransferase 3 2 2
MIRT544686 ZNF224 zinc finger protein 224 2 4
MIRT546269 TMEM30A transmembrane protein 30A 2 4
MIRT559069 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT562768 RMI2 RecQ mediated genome instability 2 2 2
MIRT563974 HCFC1 host cell factor C1 2 2
MIRT564086 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT564525 PDXP pyridoxal phosphatase 2 2
MIRT564613 ZNF703 zinc finger protein 703 2 2
MIRT566252 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT614420 ZNF440 zinc finger protein 440 2 2
MIRT618789 MTHFR methylenetetrahydrofolate reductase 2 2
MIRT619160 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT641778 ZDHHC7 zinc finger DHHC-type containing 7 2 4
MIRT653680 SLC25A36 solute carrier family 25 member 36 2 2
MIRT657861 GJD2 gap junction protein delta 2 2 2
MIRT660879 ADCYAP1R1 ADCYAP receptor type I 2 2
MIRT668781 DAAM1 dishevelled associated activator of morphogenesis 1 2 4
MIRT688559 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT695393 WDR41 WD repeat domain 41 2 2
MIRT698680 TCEA1 transcription elongation factor A1 2 2
MIRT700974 PDIA6 protein disulfide isomerase family A member 6 2 2
MIRT705055 C5orf15 chromosome 5 open reading frame 15 2 2
MIRT705864 AFF1 AF4/FMR2 family member 1 2 2
MIRT710586 CDCA4 cell division cycle associated 4 2 2
MIRT713904 IGF2R insulin like growth factor 2 receptor 2 2
MIRT717133 SKI SKI proto-oncogene 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4480 Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-miR-4480 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)

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