>NSA2|NM_014886|3'UTR
   1 CAGCAATTTCATATATAATTATTGAGGACTACACACCAATTGAAGAAACTGCCATTACTGTGATGTTTCTGAATACTACC
  81 AAACAGCCATACATGTCTGCAATGAAGAGATTTATTAAATTGTAAACATTAAAGTGGTCCAGTTTTATAAATGGTCTTTA
 161 TTTTGAAATACGCTTTGACCCCATGTTCATAAAACTGAATGATTGAAAAAAAGCAAATATACAAATATCCTACTTCATCA
 241 AAAAAAAA

ID	Duplex structure	Position	Score	MFE
1	miRNA 3' cgugaguuugacacccccGUGAa 5' ||:| Target 5' gatttattaaattgtaaaCATTa 3'	109 - 131	64.00	-5.40
2	miRNA 3' cgugaguuugacacccccGUGAa 5' |:|| Target 5' ggtctttattttgaaataCGCTt 3'	153 - 175	64.00	-5.10
3	miRNA 3' cgugaguuugacacccccgUGAA- 5' ||| Target 5' ttgaccccatgttcataaaACTGA 3'	175 - 198	52.00	-5.01

Mutant ID	Mutant Position	Mutant Source
COSN30119392	89	COSMIC
COSN2117104	91	COSMIC
COSN31492470	107	COSMIC
COSN19175724	498	COSMIC
COSN20091207	906	COSMIC
COSN20101364	930	COSMIC
COSN8229068	931	COSMIC
COSN39339	1631	COSMIC
COSN31962420	1729	COSMIC
COSN20101368	1934	COSMIC
COSN137334	1986	COSMIC
COSN22885482	2103	COSMIC
COSN22864742	2226	COSMIC
COSN32058172	2348	COSMIC
COSN15683282	2373	COSMIC
COSN1319020	2387	COSMIC
COSN24551226	2682	COSMIC
COSN27522028	2963	COSMIC
COSN29051263	2963	COSMIC
COSN15750012	3196	COSMIC
COSN22010340	3252	COSMIC

Mutant ID	Mutant Position	Mutant Source
rs1474776956	2	dbSNP
rs371734076	3	dbSNP
rs1332420182	4	dbSNP
rs1428059366	5	dbSNP
rs1269069659	6	dbSNP
rs200381888	15	dbSNP
rs752949774	15	dbSNP
rs970115546	15	dbSNP
rs117064539	16	dbSNP
rs756253755	16	dbSNP
rs766068134	17	dbSNP
rs777799061	17	dbSNP
rs1002176320	18	dbSNP
rs1271667918	18	dbSNP
rs753394751	24	dbSNP
rs755377355	25	dbSNP
rs1289371424	28	dbSNP
rs749273258	33	dbSNP
rs779227515	35	dbSNP
rs1474317081	37	dbSNP
rs753262891	39	dbSNP
rs758906071	41	dbSNP
rs1453474924	45	dbSNP
rs778078997	49	dbSNP
rs1247477376	53	dbSNP
rs971005502	54	dbSNP
rs1325040063	69	dbSNP
rs960456150	69	dbSNP
rs776158945	79	dbSNP
rs1167853621	80	dbSNP
rs1402073737	80	dbSNP
rs972934326	91	dbSNP
rs1001308169	98	dbSNP
rs1425303250	105	dbSNP
rs1192366398	106	dbSNP
rs1455980580	106	dbSNP
rs918296192	110	dbSNP
rs1398357097	112	dbSNP
rs1193443589	114	dbSNP
rs781084057	120	dbSNP
rs1034539870	121	dbSNP
rs1304430272	125	dbSNP
rs1379616651	130	dbSNP
rs1307068067	141	dbSNP
rs952460837	147	dbSNP
rs983869609	150	dbSNP
rs1368782670	157	dbSNP
rs752753746	167	dbSNP
rs910874193	172	dbSNP
rs962481971	173	dbSNP
rs974015257	178	dbSNP
rs1378867619	179	dbSNP
rs1027824042	198	dbSNP
rs1441037673	199	dbSNP
rs571020052	200	dbSNP
rs746248971	202	dbSNP
rs1432288274	203	dbSNP
rs1393854854	206	dbSNP
rs950948016	207	dbSNP
rs1440802479	208	dbSNP
rs1253106617	209	dbSNP
rs1175787229	216	dbSNP
rs1284652727	219	dbSNP
rs1480462453	222	dbSNP
rs1487134214	223	dbSNP
rs1213164191	230	dbSNP
rs1345787824	233	dbSNP
rs1279643400	237	dbSNP
rs983671157	242	dbSNP
rs1318587464	251	dbSNP
rs1304620554	258	dbSNP
rs911909331	272	dbSNP
rs562245335	279	dbSNP
rs944681508	286	dbSNP
rs1304196381	293	dbSNP
rs78395208	299	dbSNP
rs1374350889	302	dbSNP
rs528395484	304	dbSNP
rs551761397	309	dbSNP
rs34629303	313	dbSNP
rs1181843282	314	dbSNP
rs1412041127	315	dbSNP
rs1441967040	319	dbSNP
rs1159427029	320	dbSNP
rs1366042779	329	dbSNP
rs1379932964	329	dbSNP
rs1157461382	330	dbSNP
rs769571008	331	dbSNP
rs1417867629	337	dbSNP
rs1178321019	345	dbSNP
rs936095689	345	dbSNP
rs1190361012	346	dbSNP
rs1011656726	347	dbSNP
rs1256907322	348	dbSNP
rs547997475	354	dbSNP
rs1447169223	357	dbSNP
rs1301055332	358	dbSNP
rs1258892692	363	dbSNP
rs571673865	364	dbSNP
rs1238119064	371	dbSNP
rs537493122	372	dbSNP
rs371603360	373	dbSNP
rs534122903	376	dbSNP
rs1231077433	382	dbSNP
rs1354366332	384	dbSNP
rs1278340704	388	dbSNP
rs945979228	396	dbSNP
rs1387824048	398	dbSNP
rs1287608951	401	dbSNP
rs1350866224	410	dbSNP
rs1453615820	410	dbSNP
rs1167469324	411	dbSNP
rs1036319634	412	dbSNP
rs1417402353	414	dbSNP
rs578178353	416	dbSNP
rs1220659147	417	dbSNP
rs1278693610	419	dbSNP
rs1259682073	423	dbSNP
rs144968373	429	dbSNP
rs397781400	429	dbSNP
rs57476994	429	dbSNP
rs1274824148	432	dbSNP
rs994417257	435	dbSNP
rs1311150651	436	dbSNP
rs1209986363	437	dbSNP
rs1025760470	440	dbSNP
rs142083322	442	dbSNP
rs1324194911	444	dbSNP
rs1294187792	445	dbSNP
rs1459327462	451	dbSNP
rs567689231	456	dbSNP
rs1328416705	465	dbSNP
rs1460205387	466	dbSNP
rs1394081179	467	dbSNP
rs1171676187	477	dbSNP
rs1463680792	477	dbSNP
rs1371408851	479	dbSNP
rs551413342	482	dbSNP
rs1179660146	484	dbSNP
rs1433757684	485	dbSNP
rs1018039160	488	dbSNP
rs1238024823	489	dbSNP
rs1467850233	490	dbSNP
rs1258414558	514	dbSNP
rs964020289	518	dbSNP
rs796100251	519	dbSNP
rs1336971924	521	dbSNP
rs185137081	521	dbSNP
rs1250282932	523	dbSNP
rs1233327201	530	dbSNP
rs1001639739	532	dbSNP
rs1306234680	535	dbSNP
rs976451391	540	dbSNP
rs1370754594	541	dbSNP
rs922301652	541	dbSNP
rs1034014182	545	dbSNP
rs988087918	545	dbSNP
rs915061589	550	dbSNP
rs898279559	553	dbSNP
rs1396864303	558	dbSNP
rs1173805326	567	dbSNP
rs1171709895	569	dbSNP
rs1453684661	573	dbSNP
rs536832591	579	dbSNP
rs771014016	590	dbSNP
rs1465882446	594	dbSNP
rs774525211	596	dbSNP
rs1200577863	602	dbSNP
rs1486356161	611	dbSNP
rs1277515552	613	dbSNP
rs1312200401	616	dbSNP
rs1232743036	620	dbSNP
rs1374453709	621	dbSNP
rs1438134737	622	dbSNP
rs1275108717	623	dbSNP
rs553313871	626	dbSNP
rs1241617518	629	dbSNP
rs937301869	630	dbSNP
rs1216984898	633	dbSNP
rs1057128200	635	dbSNP
rs1377386270	639	dbSNP
rs895838353	640	dbSNP
rs537318389	641	dbSNP
rs1199888120	642	dbSNP
rs1025876549	645	dbSNP
rs538085136	646	dbSNP
rs1362915512	653	dbSNP
rs1188249988	659	dbSNP
rs1436471108	663	dbSNP
rs1486407678	664	dbSNP
rs1201225906	665	dbSNP
rs1254788528	671	dbSNP
rs1209506883	672	dbSNP
rs1027833733	679	dbSNP
rs950833436	680	dbSNP
rs1477705150	682	dbSNP
rs1285535806	690	dbSNP
rs983722109	704	dbSNP
rs1207310470	705	dbSNP
rs1197363850	709	dbSNP
rs189943724	716	dbSNP
rs1478097046	722	dbSNP
rs1005687111	723	dbSNP
rs1018405501	723	dbSNP
rs1414244336	730	dbSNP
rs963827844	730	dbSNP
rs1320185629	739	dbSNP
rs145900566	739	dbSNP
rs1029320007	748	dbSNP
rs771529088	763	dbSNP
rs868048277	765	dbSNP
rs557283214	767	dbSNP
rs988033942	769	dbSNP
rs975186907	775	dbSNP
rs921915186	776	dbSNP
rs1415203075	779	dbSNP
rs1186651943	787	dbSNP
rs560521016	791	dbSNP
rs946498952	795	dbSNP
rs1195993353	796	dbSNP
rs1445711976	801	dbSNP
rs773184050	814	dbSNP
rs1337311946	815	dbSNP
rs990163660	815	dbSNP
rs1271476726	820	dbSNP
rs575590898	840	dbSNP
rs1362780640	841	dbSNP
rs566817524	847	dbSNP
rs1057469804	851	dbSNP
rs60574440	852	dbSNP
rs1325768670	853	dbSNP
rs1326405172	858	dbSNP
rs1462788895	861	dbSNP
rs1391895100	867	dbSNP
rs1045530575	873	dbSNP
rs907150950	874	dbSNP
rs937272414	875	dbSNP
rs1340650689	878	dbSNP
rs1421031170	878	dbSNP
rs1219749975	879	dbSNP
rs1474746734	883	dbSNP
rs776129150	885	dbSNP
rs1194700663	890	dbSNP
rs1337799170	892	dbSNP
rs888704396	893	dbSNP
rs1005634935	896	dbSNP
rs1221155865	902	dbSNP
rs1290773387	902	dbSNP
rs1055872109	912	dbSNP
rs900030553	913	dbSNP
rs541526853	915	dbSNP
rs1304036697	916	dbSNP
rs1442946345	916	dbSNP
rs1368554290	917	dbSNP
rs997929398	919	dbSNP
rs1355907773	920	dbSNP
rs142899821	920	dbSNP
rs1442503116	920	dbSNP
rs1408832468	922	dbSNP
rs1390159598	926	dbSNP
rs1174845738	929	dbSNP
rs1052058	930	dbSNP
rs1455936167	934	dbSNP
rs1393667871	936	dbSNP
rs956331317	944	dbSNP
rs1192794742	945	dbSNP
rs1481118437	951	dbSNP
rs115406146	952	dbSNP
rs1202578139	952	dbSNP
rs1473619961	959	dbSNP
rs995677980	961	dbSNP
rs1236411062	962	dbSNP
rs199948642	963	dbSNP
rs529005218	971	dbSNP
rs1300403164	981	dbSNP
rs1224126599	982	dbSNP
rs1375129780	986	dbSNP
rs1296073969	987	dbSNP
rs1025374699	988	dbSNP
rs1422336932	989	dbSNP
rs886839986	993	dbSNP
rs967956476	994	dbSNP
rs1314132571	1006	dbSNP
rs1437181224	1007	dbSNP
rs1005087738	1008	dbSNP
rs1298061082	1013	dbSNP
rs926462904	1015	dbSNP
rs1410550586	1028	dbSNP
rs1325200417	1037	dbSNP
rs960846238	1037	dbSNP
rs1258345930	1039	dbSNP
rs15694	1047	dbSNP
rs1420500897	1048	dbSNP
rs1285137994	1049	dbSNP
rs917342250	1060	dbSNP
rs1255335733	1075	dbSNP
rs1216305161	1079	dbSNP
rs966697054	1086	dbSNP
rs11950502	1089	dbSNP
rs182532509	1092	dbSNP
rs957369481	1095	dbSNP
rs1355639073	1108	dbSNP
rs909921811	1111	dbSNP
rs1259824355	1117	dbSNP
rs941605055	1119	dbSNP
rs776804194	1120	dbSNP
rs1374238816	1121	dbSNP
rs1188223806	1124	dbSNP
rs990088199	1129	dbSNP
rs1236649875	1137	dbSNP
rs913346394	1144	dbSNP
rs1347350011	1169	dbSNP
rs1157315500	1181	dbSNP
rs1456960065	1184	dbSNP
rs1418808964	1190	dbSNP
rs1442576477	1190	dbSNP
rs967429567	1198	dbSNP
rs188432788	1205	dbSNP
rs1255487052	1206	dbSNP
rs981283277	1209	dbSNP
rs1187040535	1210	dbSNP
rs34117506	1210	dbSNP
rs1486782078	1221	dbSNP
rs928450756	1230	dbSNP
rs1335155820	1233	dbSNP
rs1274652169	1234	dbSNP
rs937265949	1235	dbSNP
rs1055687545	1250	dbSNP
rs1156297568	1251	dbSNP
rs1295630525	1255	dbSNP
rs892223481	1270	dbSNP
rs765527881	1278	dbSNP
rs1319011913	1280	dbSNP
rs1434820497	1283	dbSNP
rs551701502	1283	dbSNP
rs1021959529	1285	dbSNP
rs1398277386	1292	dbSNP
rs1167386908	1305	dbSNP
rs1460008782	1309	dbSNP
rs1335492263	1314	dbSNP
rs1171163220	1326	dbSNP
rs1430284352	1330	dbSNP
rs878874778	1335	dbSNP
rs967733798	1349	dbSNP
rs1046751460	1352	dbSNP
rs752912563	1353	dbSNP
rs1034031853	1364	dbSNP
rs1007940469	1365	dbSNP
rs1211474773	1368	dbSNP
rs960539017	1372	dbSNP
rs1354681951	1380	dbSNP
rs539365752	1390	dbSNP
rs917291283	1391	dbSNP
rs762697634	1400	dbSNP
rs901979861	1412	dbSNP
rs530912978	1416	dbSNP
rs1372185492	1421	dbSNP
rs1200923070	1422	dbSNP
rs982860146	1423	dbSNP
rs543320964	1424	dbSNP
rs957841344	1431	dbSNP
rs1463581391	1434	dbSNP
rs1238631639	1447	dbSNP
rs1011568740	1472	dbSNP
rs1020240847	1477	dbSNP
rs967440837	1478	dbSNP
rs1179276510	1482	dbSNP
rs1191491928	1484	dbSNP
rs981460389	1489	dbSNP
rs1378826773	1493	dbSNP
rs567722003	1499	dbSNP
rs1197095070	1514	dbSNP
rs928471774	1520	dbSNP
rs934136798	1538	dbSNP
rs958543030	1540	dbSNP
rs991714332	1545	dbSNP
rs1228349433	1546	dbSNP
rs1349164625	1547	dbSNP
rs892673762	1550	dbSNP
rs1173617650	1551	dbSNP
rs192874425	1553	dbSNP
rs1043518791	1554	dbSNP
rs1307998731	1566	dbSNP
rs1393295735	1580	dbSNP
rs903497003	1588	dbSNP
rs931215228	1589	dbSNP
rs751668599	1590	dbSNP
rs553490524	1591	dbSNP
rs1468765492	1594	dbSNP
rs1307447767	1599	dbSNP
rs769244317	1608	dbSNP
rs151163741	1615	dbSNP
rs908174988	1617	dbSNP
rs1002290871	1621	dbSNP
rs1477566766	1622	dbSNP
rs943782493	1624	dbSNP
rs1040773048	1625	dbSNP
rs1183541476	1639	dbSNP
rs899559668	1648	dbSNP
rs1033565857	1650	dbSNP
rs1210949018	1663	dbSNP
rs1486305610	1671	dbSNP
rs757706876	1680	dbSNP
rs896394016	1699	dbSNP
rs1013541385	1713	dbSNP
rs1344760243	1716	dbSNP
rs140141812	1717	dbSNP
rs1241478849	1720	dbSNP
rs1348835881	1728	dbSNP
rs1051023587	1730	dbSNP
rs893430983	1742	dbSNP
rs1011746863	1744	dbSNP
rs1415472404	1748	dbSNP
rs1026093041	1752	dbSNP
rs867039165	1754	dbSNP
rs1332855592	1765	dbSNP
rs903164964	1768	dbSNP
rs1413771188	1769	dbSNP
rs1002932186	1771	dbSNP
rs982807947	1780	dbSNP
rs1035803069	1782	dbSNP
rs1234073337	1783	dbSNP
rs183780823	1788	dbSNP
rs1410724614	1807	dbSNP
rs550220203	1808	dbSNP
rs188664136	1828	dbSNP
rs991373332	1842	dbSNP
rs975822499	1843	dbSNP
rs1200510928	1845	dbSNP
rs1285453811	1846	dbSNP
rs1027193737	1848	dbSNP
rs1258440022	1849	dbSNP
rs1413134535	1852	dbSNP
rs1457181804	1858	dbSNP
rs575564344	1865	dbSNP
rs921315321	1867	dbSNP
rs952615019	1868	dbSNP
rs1433198853	1872	dbSNP
rs1282458989	1874	dbSNP
rs982666751	1874	dbSNP
rs1197548878	1877	dbSNP
rs1426671279	1878	dbSNP
rs1457066361	1888	dbSNP
rs1479731016	1895	dbSNP
rs1320089541	1900	dbSNP
rs781683131	1901	dbSNP
rs1173505166	1906	dbSNP
rs1387522182	1907	dbSNP
rs1401431509	1907	dbSNP
rs908223105	1912	dbSNP
rs1461815923	1916	dbSNP
rs1462659145	1918	dbSNP
rs11327417	1927	dbSNP
rs987078854	1927	dbSNP
rs1472782747	1928	dbSNP
rs1243195817	1929	dbSNP
rs1190971634	1937	dbSNP
rs945545749	1942	dbSNP
rs1247724426	1945	dbSNP
rs943705980	1951	dbSNP
rs150295381	1955	dbSNP
rs556702373	1957	dbSNP
rs932392095	1962	dbSNP
rs937650325	1968	dbSNP
rs1050620359	1971	dbSNP
rs896186430	1972	dbSNP
rs1326281484	1979	dbSNP
rs1343769575	1983	dbSNP
rs1442716851	1986	dbSNP
rs1347727114	1989	dbSNP
rs1322382544	1996	dbSNP
rs1410027050	1999	dbSNP
rs893274082	2000	dbSNP
rs1171040378	2001	dbSNP
rs1278795762	2007	dbSNP
rs1013904015	2011	dbSNP
rs750749366	2012	dbSNP
rs1489610121	2017	dbSNP
rs1245195039	2018	dbSNP
rs947655720	2021	dbSNP
rs1224980152	2025	dbSNP
rs1438475135	2025	dbSNP
rs1041929131	2033	dbSNP
rs1267067121	2037	dbSNP
rs1202967250	2040	dbSNP
rs1341347731	2041	dbSNP
rs769234817	2044	dbSNP
rs1236218949	2047	dbSNP
rs1208922291	2048	dbSNP
rs886244270	2061	dbSNP
rs751128496	2073	dbSNP
rs1006017950	2075	dbSNP
rs903428215	2081	dbSNP
rs1266114212	2082	dbSNP
rs1442397321	2087	dbSNP
rs1355804859	2093	dbSNP
rs112719944	2094	dbSNP
rs1196409613	2097	dbSNP
rs1428437118	2098	dbSNP
rs1370448766	2103	dbSNP
rs1424987003	2103	dbSNP
rs1423424938	2108	dbSNP
rs1435262104	2108	dbSNP
rs774984740	2116	dbSNP
rs542363993	2126	dbSNP
rs1254136619	2127	dbSNP
rs975559945	2130	dbSNP
rs1370618359	2133	dbSNP
rs1482727307	2140	dbSNP
rs1028730045	2141	dbSNP
rs1212080605	2142	dbSNP
rs1458581397	2144	dbSNP
rs955423905	2144	dbSNP
rs987025224	2147	dbSNP
rs1277604565	2152	dbSNP
rs559447082	2153	dbSNP
rs528288691	2158	dbSNP
rs192576308	2163	dbSNP
rs1036093229	2166	dbSNP
rs565155405	2169	dbSNP
rs1314032364	2170	dbSNP
rs1467966972	2174	dbSNP
rs1013382193	2177	dbSNP
rs1175773194	2182	dbSNP
rs1026833020	2183	dbSNP
rs979598148	2185	dbSNP
rs1180179649	2191	dbSNP
rs952500790	2196	dbSNP
rs1298666576	2210	dbSNP
rs1472314571	2210	dbSNP
rs1361185278	2213	dbSNP
rs1482206544	2215	dbSNP
rs1236732799	2217	dbSNP
rs1216201634	2220	dbSNP
rs1330850021	2222	dbSNP
rs925513436	2229	dbSNP
rs1302769804	2232	dbSNP
rs982592928	2243	dbSNP
rs1334921286	2245	dbSNP
rs1408951921	2247	dbSNP
rs1015545562	2248	dbSNP
rs965280355	2249	dbSNP
rs1302705007	2250	dbSNP
rs937750204	2251	dbSNP
rs1054909548	2254	dbSNP
rs1157225070	2257	dbSNP
rs1322149191	2262	dbSNP
rs183649344	2268	dbSNP
rs1244741000	2285	dbSNP
rs1166971460	2288	dbSNP
rs1422026313	2295	dbSNP
rs1289172332	2297	dbSNP
rs1255378114	2298	dbSNP
rs1355155328	2307	dbSNP
rs976482581	2312	dbSNP
rs1186944636	2320	dbSNP
rs1216709847	2326	dbSNP
rs1245892196	2327	dbSNP
rs917551171	2329	dbSNP
rs1485818752	2331	dbSNP
rs920891094	2332	dbSNP
rs932428339	2333	dbSNP
rs550962017	2334	dbSNP
rs754470064	2336	dbSNP
rs778602626	2338	dbSNP
rs1258663347	2348	dbSNP
rs1424786382	2355	dbSNP
rs1163112177	2356	dbSNP
rs1241982783	2360	dbSNP
rs1047604105	2362	dbSNP
rs1383626108	2364	dbSNP
rs914762614	2367	dbSNP
rs1229707055	2379	dbSNP
rs1367836897	2381	dbSNP
rs529260318	2386	dbSNP
rs1434705382	2388	dbSNP
rs1391685204	2399	dbSNP
rs1295429767	2403	dbSNP
rs947580739	2405	dbSNP
rs1037932617	2407	dbSNP
rs900364031	2408	dbSNP
rs997319312	2409	dbSNP
rs1041855624	2416	dbSNP
rs561136634	2417	dbSNP
rs530160933	2418	dbSNP
rs1008238040	2421	dbSNP
rs1021178569	2426	dbSNP
rs1207641739	2426	dbSNP
rs966948164	2435	dbSNP
rs1057139120	2438	dbSNP
rs979714208	2448	dbSNP
rs1451665646	2460	dbSNP
rs1344906494	2465	dbSNP
rs1312373340	2467	dbSNP
rs1378648973	2477	dbSNP
rs1331957473	2480	dbSNP
rs1303691934	2494	dbSNP
rs1385234785	2496	dbSNP
rs894437248	2510	dbSNP
rs1308659689	2511	dbSNP
rs1282913790	2516	dbSNP
rs1368629997	2518	dbSNP
rs1167797667	2528	dbSNP
rs1435123074	2531	dbSNP
rs1314653300	2532	dbSNP
rs1196345915	2534	dbSNP
rs925429530	2535	dbSNP
rs1013020653	2542	dbSNP
rs1048531027	2549	dbSNP
rs959585821	2553	dbSNP
rs1273090216	2554	dbSNP
rs888516329	2555	dbSNP
rs1346151897	2557	dbSNP
rs1004081947	2558	dbSNP
rs1015432408	2576	dbSNP
rs990947404	2585	dbSNP
rs965328020	2587	dbSNP
rs1183365472	2588	dbSNP
rs1453396360	2599	dbSNP
rs998478212	2616	dbSNP
rs768211827	2617	dbSNP
rs1307347836	2619	dbSNP
rs1441758541	2623	dbSNP
rs879731248	2624	dbSNP
rs949017131	2624	dbSNP
rs1028004792	2637	dbSNP
rs1179544681	2637	dbSNP
rs1047385977	2639	dbSNP
rs1399050265	2642	dbSNP
rs546773719	2649	dbSNP
rs1250337845	2656	dbSNP
rs941940977	2659	dbSNP
rs1443445469	2660	dbSNP
rs1359678156	2662	dbSNP
rs989088451	2663	dbSNP
rs915021035	2670	dbSNP
rs138094632	2673	dbSNP
rs1469286755	2683	dbSNP
rs1344654332	2685	dbSNP
rs1334432527	2687	dbSNP
rs796583757	2700	dbSNP
rs1037649449	2712	dbSNP
rs1327204005	2713	dbSNP
rs867290679	2719	dbSNP
rs142619306	2730	dbSNP
rs552380016	2731	dbSNP
rs1332021865	2739	dbSNP
rs924747177	2748	dbSNP
rs996035646	2758	dbSNP
rs569177699	2759	dbSNP
rs144802215	2772	dbSNP
rs1008355829	2773	dbSNP
rs1220463367	2783	dbSNP
rs1473452117	2792	dbSNP
rs1301444845	2794	dbSNP
rs916146828	2795	dbSNP
rs1461152773	2799	dbSNP
rs948756711	2801	dbSNP
rs966728475	2804	dbSNP
rs1463696213	2805	dbSNP
rs1001505663	2811	dbSNP
rs1228957271	2819	dbSNP
rs1358455077	2822	dbSNP
rs1282367492	2823	dbSNP
rs1243887819	2827	dbSNP
rs1365696085	2830	dbSNP
rs1322238582	2832	dbSNP
rs1459395262	2835	dbSNP
rs1032610038	2838	dbSNP
rs1323715959	2857	dbSNP
rs369659863	2858	dbSNP
rs114226555	2859	dbSNP
rs918120987	2859	dbSNP
rs6453083	2863	dbSNP
rs1391221869	2875	dbSNP
rs1004258726	2881	dbSNP
rs1447960806	2883	dbSNP
rs543826203	2885	dbSNP
rs941716579	2890	dbSNP
rs1453405660	2896	dbSNP
rs1430142358	2904	dbSNP
rs1287760147	2906	dbSNP
rs973697787	2907	dbSNP
rs1342755715	2909	dbSNP
rs1036875315	2919	dbSNP
rs1225888104	2920	dbSNP
rs866701350	2924	dbSNP
rs1364124915	2925	dbSNP
rs1275081772	2932	dbSNP
rs1438124003	2932	dbSNP
rs1164692	2934	dbSNP
rs998134270	2937	dbSNP
rs1322282569	2939	dbSNP
rs1028684241	2940	dbSNP
rs1051602649	2950	dbSNP
rs1226349220	2951	dbSNP
rs1419169538	2951	dbSNP
rs1474762444	2951	dbSNP
rs890327470	2957	dbSNP
rs1327695717	2963	dbSNP
rs944090214	2963	dbSNP
rs1352402826	2964	dbSNP
rs1438246088	2965	dbSNP
rs1483378264	2965	dbSNP
rs1293584361	2968	dbSNP
rs1344369829	2969	dbSNP
rs1223395082	2971	dbSNP
rs1276708913	2974	dbSNP
rs1281955227	2975	dbSNP
rs977046324	2979	dbSNP
rs1279015887	2980	dbSNP
rs1320379131	2981	dbSNP
rs1365014128	2988	dbSNP
rs902487850	2995	dbSNP
rs1215530147	2997	dbSNP
rs1000881640	3013	dbSNP
rs1032968350	3021	dbSNP
rs1310392808	3025	dbSNP
rs552780225	3028	dbSNP
rs1408496942	3034	dbSNP
rs1354333421	3037	dbSNP
rs1177210889	3038	dbSNP
rs1416416366	3050	dbSNP
rs1481356952	3054	dbSNP
rs1272831231	3055	dbSNP
rs1423318903	3064	dbSNP
rs1010562892	3065	dbSNP
rs1021915505	3069	dbSNP
rs573002798	3070	dbSNP
rs545196061	3077	dbSNP
rs977781348	3078	dbSNP
rs1269658378	3089	dbSNP
rs1179957950	3094	dbSNP
rs1480256082	3098	dbSNP
rs1237883474	3099	dbSNP
rs565093346	3102	dbSNP
rs1211970343	3104	dbSNP
rs1490215062	3105	dbSNP
rs924821103	3106	dbSNP
rs1425704218	3109	dbSNP
rs960507760	3113	dbSNP
rs866256457	3114	dbSNP
rs1285849037	3117	dbSNP
rs916181621	3120	dbSNP
rs1227144978	3121	dbSNP
rs1373203936	3128	dbSNP
rs970895711	3141	dbSNP
rs1450615953	3144	dbSNP
rs983141587	3145	dbSNP
rs1336359393	3152	dbSNP
rs746530218	3155	dbSNP
rs1157001411	3161	dbSNP
rs1406713923	3163	dbSNP
rs1418504059	3176	dbSNP
rs1414433900	3177	dbSNP
rs1183469909	3181	dbSNP
rs1014638015	3208	dbSNP
rs1165083041	3227	dbSNP
rs1364353057	3229	dbSNP
rs1402573880	3230	dbSNP
rs1208985588	3237	dbSNP
rs1465958476	3248	dbSNP
rs1265739445	3269	dbSNP
rs962979236	3270	dbSNP
rs948993884	3277	dbSNP
rs921630036	3294	dbSNP
rs1230489167	3298	dbSNP
rs1301767136	3299	dbSNP
rs575569656	3311	dbSNP
rs1314770299	3314	dbSNP
rs1436147754	3334	dbSNP
rs1391107781	3339	dbSNP
rs188306499	3342	dbSNP
rs1350472755	3346	dbSNP
rs561282121	3352	dbSNP
rs777570421	3358	dbSNP
rs1384429364	3363	dbSNP
rs1188931224	3366	dbSNP
rs199790354	3366	dbSNP
rs373630034	3366	dbSNP
rs1051864	3368	dbSNP
rs1042463103	3369	dbSNP
rs1204123476	3374	dbSNP
rs1488540251	3380	dbSNP
rs1230199863	3391	dbSNP
rs1266646289	3397	dbSNP
rs1224492818	3399	dbSNP
rs1292805486	3399	dbSNP
rs530031745	3402	dbSNP
rs1358742069	3405	dbSNP
rs138704997	3410	dbSNP
rs1220354721	3414	dbSNP
rs879198328	3425	dbSNP
rs901242223	3428	dbSNP
rs141717456	3432	dbSNP
rs551969560	3432	dbSNP
rs1295335911	3442	dbSNP

- Cell, 2010

RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.