miRTarBase - #MIRT564366


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pre-miRNA Information
pre-miRNA hsa-mir-4477a   
Genomic Coordinates chr9: 41233755 - 41233835
Description Homo sapiens miR-4477a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4477a
Sequence 48| CUAUUAAGGACAUUUGUGAUUC |69
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1281813060 1 dbSNP
rs1352899679 1 dbSNP
rs1283566158 2 dbSNP
rs1236244724 4 dbSNP
rs75019967 4 dbSNP
rs1348124293 5 dbSNP
rs34026740 8 dbSNP
rs1288237115 9 dbSNP
rs71262206 10 dbSNP
rs1355759977 11 dbSNP
rs1300249508 16 dbSNP
rs1328879592 18 dbSNP
rs139133717 20 dbSNP
Putative Targets

Gene Information
Gene Symbol TRMT5   
Synonyms COXPD26, KIAA1393, TRM5
Description tRNA methyltransferase 5
Transcript NM_020810   
Expression
Putative miRNA Targets on TRMT5
3'UTR of TRMT5
(miRNA target sites are highlighted)		 
>TRMT5|NM_020810|3'UTR
   1 TTGGAAATGTTTTCTCCATCTCCCTACCAGACTTACATGTAGTGAAATAGAATTTGTATTATTTAATAAAATTTTAGGGT
  81 TTGGTTTTTACTATTGAACCCTTGTACTTTGCCTTATTTTACAAATTGAGGATTACCAATTAAACTTTAACTGAACTAAG
 161 GCTACCAAATACATTCCCTGTTATCTAAATTATAACATACAATTATTTTATAACAAAATATATCTAATTTTTATTGGATA
 241 AATATGAATAAATATTTTCTCTCAGGGAAAATAATTTTTGAAAGTAGGGTGATTGAGTACTAACTAGGAAGGTATTAACA
 321 CCACTTTGTAGTTGTCCTTTACGTAACTACTCCTTTACTGCCAATTAACTATCACCATAAAAGTAATAAAAAATGAAATT
 401 ATTTAGAACGGGGCAGGCAAACTACATCCTGCAGGCCAAATCTGTCCCACCACCTGTTTTCATATGGCCTGTGGCCTAAT
 481 AATGTTCTTACGTTTTCCATTGGTTGAAAAATAATCAAAAGAACATTTTGTGACGTGAAAATTTTATGACATCTATTATG
 561 TATCAGTTTTAAAAATTAGAATTGTATGAAATTAAGAGTTTCAGAGTTCATAAAGTTTGATTGGAACATACCATGCTCAT
 641 TTGTTTACATATCATCTGCAGCTGTTTTTTGTTTTTAATATGGAACGCTTCACGAATTTGCATGTCATCCTTGCGCAGGG
 721 ACCATTCTGATCTTCTCTGTACCATTCCAGTTTTTTAGTATATGTGCTGCTGAAGTGAGGACTGCAGCTGCTTTCTTGAA
 801 CAATAGCAGAGTTGAGTGGTTGCAACACACACTGAATGTGACTGTCATCACTTCACACTGCTGTTTGACACATCACAAAT
 881 CACTGATGTGGTTGTAACGACAGCATTTTGAGTGCCATGTATATCACATGAACCCACATTTTATTTTTTATTACCAGAGC
 961 ATATCTATTATAGCAAAACAAGAAAAGTGGACTTTGTTGTTATTTTTAAAGTACAGTAGGGTGTGAATTATTTTGATGTT
1041 GAATTAGACGACAAAGCATCTATATAGCTAAGCTAAAAGAATAACCATTGACATTACCAGACAAACCACTCATCACAGTA
1121 TTCCCAACTCACAGGCAAGCAACTGTTAGAAAAATTAGAAAATTTAAAATGGAAATAACAAAGCAGAATTTCTTCACAAA
1201 ATGAAAATGAGGCTGCAACAACAGTAAGTCTCTAAGTCAATCATTTGTTAGCCAAGCAAAGCCATTTATTGATGGTGTGA
1281 ATTAATTATGTTTGGATGCAGCAGCTGAATATATCCAGAGAAAATAAACTTAAGATTACTGGCCTTTGGCAAGAACAGTT
1361 GCTTAAAGAGTTAAGGACATTGAAAGCGACATAAATAGTCACTTTAAAAAGGAAATGATTCTGGATGGTTCTTTGACTCT
1441 ATTTTTATTTTTACTTAGAGACAGGGTCTTGCTCTGTTGCCCAGGCTGGAGTGTAGAGACACAGTTACACCTCAATGTAA
1521 CCTTGAACTCCTAGGCTTGAGATCTTCCCATCTCGGCTTCCCAATGTGTGAAGGTTACAGGTGTGAGCCCTTATATGTGG
1601 CCCTCGTGAATGGTTTAGCACTATCCCCTTGGTGGTGTCCTTAAGATAATGAGTTATGAGATCTTGTTGTTTCAAAGTAT
1681 GTGGCACTCGCCCCCCACACTCTCTTGCTCCTGCCTTCGCCATGTGAAGTGCCTTCTCCTATTTTGCCTTCTACCATGAG
1761 TAAAAGCTTCCTGAGGCTTCCCCAGAAGCAGATGCCAGTGCTATGCTTCCTATAGCCTGGAGAACTGTGAGCCAATTATA
1841 CCTCTTTTCTTATAAATTACCCAGTATCAAGTATTTCTTTATAGCAATGCAAGAATGGCCTAAAACACAAGGCAAAACAA
1921 CTTTGATATGGTACAGTCATTTTGACAATCGATATTTGAATCACAATATTTGATGACAATATCCTTACACATTTGTCATA
2001 CTATCAAAGAGAAAGAAACAAGATTTCCATTCCCACAAATTTTAGTGAGTATATTTTCTGAGTTCAGCATTTTTAGGGAC
2081 CTAGGTGCAAGTGCAAAGGAAATTTCCCTGTTTCAAAATCTATTTAACTGCAATTGAGGTGATTCAACCTAATTTTCAGT
2161 AAGAAGTGATTAAAATAATGACATGCTAAAAGGCAAATTTCAAGGGAAGAAATGTAAAAGAATTTTACAAATGCTTTCCA
2241 AGTGATGAATATGCTCAGTTAATTTCATATGCTCCTGGATTGATAGCAGTATTTGGCAATACCTATCTGTATGAGAAGAC
2321 ATTTTTAAAGATGAAATGTGTAAAATCTTATTACCATTAGTATTAATGGTTAATGATGGTTAATGATAACCATTAATAGG
2401 CAATCATTTACAACTGATTTTGATCACAGGGAACACTTACTTAGAACCCTGATTAGAGGCAATGTTATTCTCACCAAAAA
2481 AGGCATTACAAAAAATTGGGCTATATTTTGAATTTTGTCAATTAAAAAAGCGTGGGAGCAGTGTGAAGGAGAAGAGGCAA
2561 GAACGACCCCTGGACCGACCAAAGCCCGCGCGCTGCTGCGTCCCACACCCGGTGCCCACATCCCGCCGCCGCCGCCGCCG
2641 CCATGCCCAAGAGAAAGACTGAAGGGGATGCTAAAGGAGATAAAGCCAAGGTGAAGGATGAATCACAGAGAAGATCTGCG
2721 AGGTTGTCTGCTAAACCTGCTCCTCCAAAGCCAGAGCCCAAGCCTAAAAAGGCCCCTGCAAAGAAGGGAGAGAAGGTACC
2801 CAAAGGGAAAAAGAGAAAAGCTGATGCTGGCAAGGAGCGGGAAGGTGCTGGAGATCCCAAGTGAAGTGTGTGCATTTTTT
2881 ATAACTGTACTTCTGGTGACTGTACAGTTTGAAATATTCTTTATCAAGTTTTATAAAAATGCAGAATTTTGTTTTACTTT
2961 TTTTAAGCTATGTTGTTAGCACACAGAACACTTCATTGTTGTTTTTGGGGGAAGGGGTATGTGTCACTAATAGAATATCT
3041 CTGAAGCTGGATTGATACGGGGAAAACATCTTTCCCTTCTAGTTTTGAGAGACTTCCTCTTGGCTCCCAGGAGGAGGGAT
3121 TTCCTGACTTTGACACACATGGCCACCTTGGCACAAAAGCCTTGTGGTATGGAAAAACAAATTCGTTTTTATGTCTTCTT
3201 TTCCCTTTCCATCTTTCAGCATAGACTTAATCCCCTTAAGCCCAGACATCTGTTGGGACCTGACCCCCGGTCATTGGTTA
3281 CCAGTGTGTCTGGCAATCTGGACTTTCCAGTGATGCCACTGAGATGGCACCTGTCAAAAGAGCAGTGGTTCCATTTCTAG
3361 ATTATGGATCTTCGGATAAATTCTGCCATTTTCATTTCACTTCCTGAAAGTCAGGGTTGGCTTGTGAAAAGTTGTTAAAC
3441 AACATGCTAAATGTGAAATGTTAACCCTCTAAACTTTCCCTGTTCAGAGCATCAGATGAGGACTTCATTGGGTTTTATAG
3521 CGGCTGATTTTTGGTAGTCCATTGAAGAAGAGAGTTTGAAAGTTGTATACTGTTAATGACTGTCTGCCCATGTCCTGCCT
3601 GAAATACCATGATTGTTTATGGAAAGTATCTTTAATAAAGCTGGATACAGTTTGAAAGAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuUAGUGUUUACAGGAAUUAUc 5'
            || : ||:| ||:|||||| 
Target 5' ttATGGAAAGTATCTTTAATAa 3'
 3617 - 3638 152.00 -6.00
2 
miRNA  3' cuuaguguuuACAGGAAUUAUc 5'
                    |||::|||||| 
Target 5' agctgtttttTGTTTTTAATAt 3'
 660 - 681 140.00 -5.40
3 
miRNA  3' cuuAGUGUUUACAGGAAUUAUc 5'
             |::  ::||||||||| | 
Target 5' cccTTGGTGGTGTCCTTAAGAt 3'
 1626 - 1647 131.00 -10.62
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30453886 23 COSMIC
COSN30152639 24 COSMIC
COSN26555379 36 COSMIC
COSN30114095 69 COSMIC
COSN6255443 73 COSMIC
COSN25311463 91 COSMIC
COSN20899508 233 COSMIC
COSN20899507 321 COSMIC
COSN8660568 897 COSMIC
COSN21928035 981 COSMIC
COSN20140700 1292 COSMIC
COSN22532119 1422 COSMIC
COSN5388458 1676 COSMIC
COSN21815224 1844 COSMIC
COSN26592500 1897 COSMIC
COSN26160557 2522 COSMIC
COSN1169662 2549 COSMIC
COSN1169660 2551 COSMIC
COSN1169658 2559 COSMIC
COSN31586017 2561 COSMIC
COSN1169654 2576 COSMIC
COSN1169650 2587 COSMIC
COSN27000106 2591 COSMIC
COSN1169646 2610 COSMIC
COSN31556861 2615 COSMIC
COSN20111382 2622 COSMIC
COSN30456428 2642 COSMIC
COSN19663661 2658 COSMIC
COSN19665044 2678 COSMIC
COSN30450799 2687 COSMIC
COSN20403568 2690 COSMIC
COSN19703386 2692 COSMIC
COSN19645403 2703 COSMIC
COSN30466187 2704 COSMIC
COSN19645438 2709 COSMIC
COSN26669224 2720 COSMIC
COSN30523547 2730 COSMIC
COSN30151987 2745 COSMIC
COSN8846762 2751 COSMIC
COSN8864846 2774 COSMIC
COSN30452197 2775 COSMIC
COSN27000103 2812 COSMIC
COSN26575317 2815 COSMIC
COSN30132646 2815 COSMIC
COSN30496667 2827 COSMIC
COSN27000102 2840 COSMIC
COSN30127158 2847 COSMIC
COSN30040888 2856 COSMIC
COSN1169644 2873 COSMIC
COSN13589990 2903 COSMIC
COSN30174107 2911 COSMIC
COSN31599245 2919 COSMIC
COSN31514347 2964 COSMIC
COSN31514337 2972 COSMIC
COSN26580511 3018 COSMIC
COSN26646651 3037 COSMIC
COSN31589761 3091 COSMIC
COSN20111372 3231 COSMIC
COSN26666963 3551 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1424627535 7 dbSNP
rs1167244124 9 dbSNP
rs1490807763 14 dbSNP
rs1392545288 15 dbSNP
rs1289345816 16 dbSNP
rs752832116 17 dbSNP
rs1055281696 22 dbSNP
rs1307720047 23 dbSNP
rs768081967 27 dbSNP
rs760108894 28 dbSNP
rs1360722876 32 dbSNP
rs775065939 34 dbSNP
rs939471573 35 dbSNP
rs554018924 37 dbSNP
rs762228469 37 dbSNP
rs763398150 39 dbSNP
rs1367942442 41 dbSNP
rs377687615 48 dbSNP
rs1457779012 50 dbSNP
rs1294819537 62 dbSNP
rs1332179876 79 dbSNP
rs1166048766 93 dbSNP
rs1212577186 97 dbSNP
rs1268153951 98 dbSNP
rs1426091822 99 dbSNP
rs972716002 100 dbSNP
rs746262994 101 dbSNP
rs939984365 111 dbSNP
rs1382784227 114 dbSNP
rs566548988 124 dbSNP
rs1036534925 132 dbSNP
rs1416018826 139 dbSNP
rs939691013 140 dbSNP
rs1465003346 143 dbSNP
rs774955744 153 dbSNP
rs984298448 155 dbSNP
rs1203038702 157 dbSNP
rs952478200 167 dbSNP
rs546654919 168 dbSNP
rs915779587 177 dbSNP
rs1485393335 180 dbSNP
rs1265824567 184 dbSNP
rs965535685 192 dbSNP
rs1232260880 196 dbSNP
rs1288443844 200 dbSNP
rs1352287283 212 dbSNP
rs1031387969 219 dbSNP
rs1283521584 223 dbSNP
rs1357184530 236 dbSNP
rs185470218 242 dbSNP
rs1255083125 248 dbSNP
rs1183100500 252 dbSNP
rs1485472318 252 dbSNP
rs959820607 261 dbSNP
rs904162544 265 dbSNP
rs767289489 280 dbSNP
rs139801739 289 dbSNP
rs1172199829 293 dbSNP
rs1375159176 296 dbSNP
rs1021289845 308 dbSNP
rs551007545 312 dbSNP
rs967800383 327 dbSNP
rs1021608772 332 dbSNP
rs1439451664 336 dbSNP
rs1012103413 342 dbSNP
rs191739226 343 dbSNP
rs188803977 344 dbSNP
rs1277946844 350 dbSNP
rs1050593791 352 dbSNP
rs1346958918 360 dbSNP
rs997643488 371 dbSNP
rs1055736878 372 dbSNP
rs1436270459 372 dbSNP
rs1181211449 375 dbSNP
rs542168714 378 dbSNP
rs573154969 382 dbSNP
rs559337479 385 dbSNP
rs939502777 394 dbSNP
rs1430843768 409 dbSNP
rs1169982323 411 dbSNP
rs1449509652 416 dbSNP
rs1391504843 439 dbSNP
rs1036587368 440 dbSNP
rs940930834 444 dbSNP
rs906612692 448 dbSNP
rs1327604544 450 dbSNP
rs1371022887 453 dbSNP
rs1442453142 462 dbSNP
rs1301248560 463 dbSNP
rs1370121289 467 dbSNP
rs1427559072 468 dbSNP
rs1228934196 487 dbSNP
rs780920724 491 dbSNP
rs1195378279 492 dbSNP
rs545475906 492 dbSNP
rs1450468079 500 dbSNP
rs1211859265 530 dbSNP
rs1252976618 531 dbSNP
rs1450581861 532 dbSNP
rs576915016 534 dbSNP
rs931092587 535 dbSNP
rs1205818192 537 dbSNP
rs1474228016 539 dbSNP
rs1167026670 543 dbSNP
rs984067626 549 dbSNP
rs147398992 550 dbSNP
rs1323288217 557 dbSNP
rs1393672388 566 dbSNP
rs1225436968 571 dbSNP
rs1326071635 573 dbSNP
rs1297468033 575 dbSNP
rs1324413276 576 dbSNP
rs921182966 577 dbSNP
rs991201943 586 dbSNP
rs959873417 591 dbSNP
rs1302315349 609 dbSNP
rs183693738 612 dbSNP
rs1272578896 621 dbSNP
rs1465747172 623 dbSNP
rs928427351 631 dbSNP
rs1303022858 633 dbSNP
rs1031438790 638 dbSNP
rs913485 639 dbSNP
rs1446855283 640 dbSNP
rs968440865 643 dbSNP
rs1418188352 649 dbSNP
rs1475956497 658 dbSNP
rs1397926244 659 dbSNP
rs967307173 660 dbSNP
rs1416439800 663 dbSNP
rs1454261057 665 dbSNP
rs1021342528 671 dbSNP
rs1382653465 677 dbSNP
rs1381488613 684 dbSNP
rs34442181 684 dbSNP
rs1022078067 686 dbSNP
rs1165645172 687 dbSNP
rs1012578805 688 dbSNP
rs191300361 693 dbSNP
rs1317652093 701 dbSNP
rs1241272328 702 dbSNP
rs953340970 714 dbSNP
rs779782364 715 dbSNP
rs1201414864 720 dbSNP
rs1200595648 729 dbSNP
rs1029043133 732 dbSNP
rs1267951712 737 dbSNP
rs1486450980 737 dbSNP
rs1185274952 741 dbSNP
rs997529193 744 dbSNP
rs535772673 759 dbSNP
rs1182746262 760 dbSNP
rs1419192348 767 dbSNP
rs1160625638 770 dbSNP
rs1362014438 775 dbSNP
rs1452915825 782 dbSNP
rs758090057 784 dbSNP
rs1376984630 790 dbSNP
rs750225247 813 dbSNP
rs1483999600 834 dbSNP
rs1312575105 838 dbSNP
rs1374291910 839 dbSNP
rs1015076666 840 dbSNP
rs1005577277 848 dbSNP
rs1335719584 850 dbSNP
rs1194138953 857 dbSNP
rs1235572543 859 dbSNP
rs144457966 860 dbSNP
rs1346238684 867 dbSNP
rs1290915236 872 dbSNP
rs1256779397 873 dbSNP
rs1033894931 885 dbSNP
rs1178462933 890 dbSNP
rs1247719362 893 dbSNP
rs1418440555 894 dbSNP
rs1004137042 895 dbSNP
rs547013470 898 dbSNP
rs1432677772 905 dbSNP
rs1172763114 906 dbSNP
rs1355364929 908 dbSNP
rs1463688547 909 dbSNP
rs539453813 910 dbSNP
rs1049736902 914 dbSNP
rs112075968 915 dbSNP
rs931000245 921 dbSNP
rs1037145993 928 dbSNP
rs1395792371 932 dbSNP
rs187914918 937 dbSNP
rs894116853 939 dbSNP
rs761864245 948 dbSNP
rs140803662 953 dbSNP
rs1234047603 954 dbSNP
rs1283046594 960 dbSNP
rs1048907248 967 dbSNP
rs938392255 968 dbSNP
rs928481190 972 dbSNP
rs35784698 979 dbSNP
rs1213741476 991 dbSNP
rs1254869554 995 dbSNP
rs1452450091 999 dbSNP
rs943940225 1002 dbSNP
rs117690349 1008 dbSNP
rs376198566 1011 dbSNP
rs1430536125 1013 dbSNP
rs1168677078 1021 dbSNP
rs1354156714 1029 dbSNP
rs1462076711 1038 dbSNP
rs558454243 1039 dbSNP
rs914497977 1043 dbSNP
rs764120187 1049 dbSNP
rs1392956626 1050 dbSNP
rs968492622 1055 dbSNP
rs1289829461 1056 dbSNP
rs953393551 1058 dbSNP
rs374968311 1060 dbSNP
rs1471073521 1065 dbSNP
rs1231082874 1072 dbSNP
rs1181048950 1073 dbSNP
rs1028928699 1074 dbSNP
rs976163209 1077 dbSNP
rs548391430 1084 dbSNP
rs528438856 1094 dbSNP
rs183655005 1097 dbSNP
rs1274467488 1104 dbSNP
rs1005052802 1109 dbSNP
rs1321664695 1120 dbSNP
rs1467090546 1126 dbSNP
rs1220665992 1129 dbSNP
rs887907186 1135 dbSNP
rs775525627 1136 dbSNP
rs1003825562 1145 dbSNP
rs970933245 1154 dbSNP
rs1423204294 1157 dbSNP
rs1475634514 1172 dbSNP
rs1167197819 1173 dbSNP
rs1415694787 1175 dbSNP
rs1353335477 1182 dbSNP
rs748913645 1183 dbSNP
rs1347430276 1188 dbSNP
rs1442141851 1195 dbSNP
rs2351509 1196 dbSNP
rs150630011 1197 dbSNP
rs888537790 1204 dbSNP
rs563259682 1206 dbSNP
rs1414952381 1219 dbSNP
rs543134142 1224 dbSNP
rs1055454893 1230 dbSNP
rs1048452204 1240 dbSNP
rs1449921813 1250 dbSNP
rs759910783 1255 dbSNP
rs574172669 1256 dbSNP
rs997268696 1257 dbSNP
rs555574040 1265 dbSNP
rs899860966 1268 dbSNP
rs1318601831 1269 dbSNP
rs938445956 1272 dbSNP
rs1213421198 1276 dbSNP
rs1320872196 1289 dbSNP
rs1402204303 1291 dbSNP
rs1405559202 1293 dbSNP
rs1472530928 1314 dbSNP
rs1159193787 1319 dbSNP
rs573239444 1330 dbSNP
rs1041426370 1334 dbSNP
rs535642610 1337 dbSNP
rs1376389023 1348 dbSNP
rs1436954843 1349 dbSNP
rs1041819647 1352 dbSNP
rs1473087340 1361 dbSNP
rs1314403411 1365 dbSNP
rs1353149228 1368 dbSNP
rs945909847 1370 dbSNP
rs1279590179 1373 dbSNP
rs924516523 1380 dbSNP
rs1185480747 1390 dbSNP
rs1285203462 1394 dbSNP
rs914362764 1395 dbSNP
rs1242723370 1398 dbSNP
rs141892911 1406 dbSNP
rs193301909 1408 dbSNP
rs1182665857 1421 dbSNP
rs1234609391 1425 dbSNP
rs921967077 1426 dbSNP
rs1178627823 1428 dbSNP
rs1223656720 1430 dbSNP
rs1172141921 1435 dbSNP
rs1455886619 1435 dbSNP
rs1399649747 1436 dbSNP
rs1413485462 1445 dbSNP
rs1328962376 1448 dbSNP
rs914341918 1453 dbSNP
rs1317851990 1466 dbSNP
rs1243113195 1475 dbSNP
rs1236246859 1476 dbSNP
rs991223154 1480 dbSNP
rs976049150 1482 dbSNP
rs966140033 1484 dbSNP
rs188346331 1486 dbSNP
rs570780187 1495 dbSNP
rs1015763544 1500 dbSNP
rs983910989 1508 dbSNP
rs952263618 1510 dbSNP
rs183008956 1513 dbSNP
rs952854429 1515 dbSNP
rs1339753438 1516 dbSNP
rs1192151669 1521 dbSNP
rs770267016 1540 dbSNP
rs771548535 1544 dbSNP
rs1317369061 1548 dbSNP
rs1421158436 1548 dbSNP
rs1463648076 1549 dbSNP
rs959603218 1554 dbSNP
rs1395171951 1555 dbSNP
rs1034055133 1558 dbSNP
rs1442931523 1559 dbSNP
rs1002541850 1560 dbSNP
rs1330365537 1564 dbSNP
rs148078258 1565 dbSNP
rs996965677 1574 dbSNP
rs1041481428 1581 dbSNP
rs1337673518 1591 dbSNP
rs1218118810 1595 dbSNP
rs1273815629 1596 dbSNP
rs899912721 1600 dbSNP
rs1010378613 1601 dbSNP
rs1161635387 1604 dbSNP
rs1447972881 1605 dbSNP
rs763599416 1606 dbSNP
rs1476612099 1613 dbSNP
rs1041634062 1620 dbSNP
rs1417879926 1622 dbSNP
rs781730121 1623 dbSNP
rs776262892 1632 dbSNP
rs1887742 1644 dbSNP
rs892997158 1645 dbSNP
rs1382624295 1646 dbSNP
rs1319988092 1647 dbSNP
rs931936398 1648 dbSNP
rs921851745 1650 dbSNP
rs1040231510 1651 dbSNP
rs1399568136 1651 dbSNP
rs1294118809 1653 dbSNP
rs556004415 1654 dbSNP
rs762536854 1659 dbSNP
rs928365197 1663 dbSNP
rs981080675 1664 dbSNP
rs1240652595 1666 dbSNP
rs944719886 1669 dbSNP
rs1207291401 1672 dbSNP
rs746561379 1687 dbSNP
rs1260002229 1689 dbSNP
rs1487112937 1690 dbSNP
rs1192561575 1695 dbSNP
rs1257776249 1696 dbSNP
rs1184756744 1697 dbSNP
rs775148366 1697 dbSNP
rs190023950 1699 dbSNP
rs1367846195 1701 dbSNP
rs534120380 1704 dbSNP
rs779508369 1710 dbSNP
rs1358448365 1713 dbSNP
rs1220945726 1718 dbSNP
rs1418858791 1719 dbSNP
rs1313755436 1729 dbSNP
rs952213140 1734 dbSNP
rs920806592 1736 dbSNP
rs1297714704 1740 dbSNP
rs144698330 1741 dbSNP
rs747146680 1741 dbSNP
rs1336874353 1746 dbSNP
rs952946870 1756 dbSNP
rs1284489631 1779 dbSNP
rs1359410523 1780 dbSNP
rs1212005389 1789 dbSNP
rs959488258 1796 dbSNP
rs1035278943 1803 dbSNP
rs185358123 1820 dbSNP
rs1436891881 1826 dbSNP
rs745650599 1835 dbSNP
rs758668910 1842 dbSNP
rs1301161334 1853 dbSNP
rs778746469 1858 dbSNP
rs1008251478 1865 dbSNP
rs903154333 1869 dbSNP
rs1020282107 1871 dbSNP
rs1011521882 1875 dbSNP
rs893038677 1877 dbSNP
rs1464672799 1882 dbSNP
rs182580028 1885 dbSNP
rs1417613341 1906 dbSNP
rs1397377832 1915 dbSNP
rs1393210141 1924 dbSNP
rs1307767604 1926 dbSNP
rs1376787803 1928 dbSNP
rs1235513265 1929 dbSNP
rs1306036487 1936 dbSNP
rs377384375 1936 dbSNP
rs757154869 1937 dbSNP
rs1010018216 1938 dbSNP
rs1055666235 1950 dbSNP
rs563163891 1951 dbSNP
rs542997433 1957 dbSNP
rs906953337 1962 dbSNP
rs529779604 1968 dbSNP
rs1236309686 1973 dbSNP
rs1457232754 1978 dbSNP
rs1194032104 1980 dbSNP
rs1396597929 1982 dbSNP
rs996044534 1990 dbSNP
rs900457877 1992 dbSNP
rs1045432590 1994 dbSNP
rs142226314 1997 dbSNP
rs190621623 1998 dbSNP
rs139043012 1999 dbSNP
rs1329345352 2005 dbSNP
rs1400258356 2013 dbSNP
rs1442199999 2018 dbSNP
rs753819307 2019 dbSNP
rs907571402 2019 dbSNP
rs1218972699 2020 dbSNP
rs1300220670 2022 dbSNP
rs574018977 2022 dbSNP
rs1219968274 2029 dbSNP
rs1255527681 2036 dbSNP
rs1323857239 2040 dbSNP
rs1317234975 2048 dbSNP
rs1305295669 2050 dbSNP
rs944557415 2051 dbSNP
rs907924920 2053 dbSNP
rs1190388604 2058 dbSNP
rs1262726983 2060 dbSNP
rs1048286223 2087 dbSNP
rs750633314 2096 dbSNP
rs1271797404 2103 dbSNP
rs931616506 2110 dbSNP
rs777787823 2116 dbSNP
rs1168633648 2119 dbSNP
rs1422939611 2138 dbSNP
rs1462022868 2145 dbSNP
rs920141136 2149 dbSNP
rs1348621648 2154 dbSNP
rs145103960 2173 dbSNP
rs975612278 2175 dbSNP
rs1281141239 2179 dbSNP
rs930622648 2202 dbSNP
rs777613314 2203 dbSNP
rs1404181289 2205 dbSNP
rs1289777548 2219 dbSNP
rs1351025365 2221 dbSNP
rs1299868879 2223 dbSNP
rs1362231897 2226 dbSNP
rs1401398330 2233 dbSNP
rs920591643 2239 dbSNP
rs1275897700 2242 dbSNP
rs964538479 2251 dbSNP
rs1233332969 2256 dbSNP
rs1292001852 2262 dbSNP
rs1319805263 2266 dbSNP
rs141328656 2274 dbSNP
rs1489403281 2280 dbSNP
rs959598256 2281 dbSNP
rs928224670 2282 dbSNP
rs1169952839 2284 dbSNP
rs1475603445 2285 dbSNP
rs1183620487 2301 dbSNP
rs982251595 2303 dbSNP
rs1470433570 2306 dbSNP
rs1017700094 2312 dbSNP
rs1160304665 2312 dbSNP
rs144909865 2312 dbSNP
rs1418248001 2314 dbSNP
rs118114625 2322 dbSNP
rs1480342357 2330 dbSNP
rs1251830095 2339 dbSNP
rs1179494150 2359 dbSNP
rs1285413033 2368 dbSNP
rs1011574689 2374 dbSNP
rs1479342033 2388 dbSNP
rs573703517 2397 dbSNP
rs988967982 2405 dbSNP
rs957181014 2414 dbSNP
rs1285600271 2422 dbSNP
rs767575559 2423 dbSNP
rs186092214 2425 dbSNP
rs1486096339 2431 dbSNP
rs1001393094 2432 dbSNP
rs1235749869 2444 dbSNP
rs1032628705 2448 dbSNP
rs995824010 2449 dbSNP
rs1472500684 2460 dbSNP
rs577452107 2472 dbSNP
rs138274347 2477 dbSNP
rs1004628531 2482 dbSNP
rs537441773 2482 dbSNP
rs886182024 2494 dbSNP
rs1048724783 2496 dbSNP
rs759892360 2506 dbSNP
rs920209555 2510 dbSNP
rs886274872 2512 dbSNP
rs1356991797 2516 dbSNP
rs1446652056 2519 dbSNP
rs1317341583 2520 dbSNP
rs182088890 2525 dbSNP
rs1222030175 2531 dbSNP
rs1237724491 2531 dbSNP
rs368727012 2532 dbSNP
rs1330767884 2533 dbSNP
rs912758210 2538 dbSNP
rs1276763292 2542 dbSNP
rs1141777 2559 dbSNP
rs1441955487 2560 dbSNP
rs986961907 2561 dbSNP
rs555107707 2564 dbSNP
rs967488524 2567 dbSNP
rs913284936 2573 dbSNP
rs1453544660 2577 dbSNP
rs377258529 2581 dbSNP
rs555654169 2581 dbSNP
rs957576604 2587 dbSNP
rs1034283554 2588 dbSNP
rs1001882035 2589 dbSNP
rs1161835332 2591 dbSNP
rs752375042 2592 dbSNP
rs1417856112 2593 dbSNP
rs377748796 2595 dbSNP
rs1330576812 2600 dbSNP
rs1371541574 2607 dbSNP
rs1438308760 2608 dbSNP
rs1273347411 2610 dbSNP
rs1407975033 2611 dbSNP
rs1215273175 2613 dbSNP
rs1260002893 2614 dbSNP
rs1198640003 2615 dbSNP
rs1254173490 2619 dbSNP
rs1183658900 2620 dbSNP
rs1462307435 2622 dbSNP
rs1240856230 2623 dbSNP
rs535080686 2624 dbSNP
rs1197137471 2625 dbSNP
rs774671183 2626 dbSNP
rs1004639754 2627 dbSNP
rs1213478997 2628 dbSNP
rs1316266974 2629 dbSNP
rs1315702137 2630 dbSNP
rs1463602133 2630 dbSNP
rs886193498 2631 dbSNP
rs565756976 2633 dbSNP
rs1391334971 2636 dbSNP
rs1385124858 2637 dbSNP
rs1313125643 2640 dbSNP
rs375686050 2641 dbSNP
rs994527008 2642 dbSNP
rs1280327697 2643 dbSNP
rs201910810 2643 dbSNP
rs759370363 2643 dbSNP
rs773675104 2643 dbSNP
rs900197465 2643 dbSNP
rs1051270811 2644 dbSNP
rs1386039302 2644 dbSNP
rs1447924177 2647 dbSNP
rs946157335 2648 dbSNP
rs1290993490 2651 dbSNP
rs1476582332 2653 dbSNP
rs1192243574 2655 dbSNP
rs1452153838 2657 dbSNP
rs532336887 2657 dbSNP
rs1345095453 2658 dbSNP
rs1164820778 2659 dbSNP
rs1445883249 2661 dbSNP
rs1382881942 2667 dbSNP
rs201476394 2678 dbSNP
rs1389822095 2681 dbSNP
rs1420080126 2686 dbSNP
rs1428751950 2688 dbSNP
rs200150698 2690 dbSNP
rs202030754 2692 dbSNP
rs1485443862 2693 dbSNP
rs56135834 2698 dbSNP
rs957462677 2701 dbSNP
rs201423940 2703 dbSNP
rs749585686 2708 dbSNP
rs74614165 2709 dbSNP
rs1399507153 2711 dbSNP
rs1289683763 2712 dbSNP
rs1244236987 2715 dbSNP
rs1342793728 2719 dbSNP
rs35510992 2723 dbSNP
rs1327231482 2724 dbSNP
rs1243321357 2730 dbSNP
rs569604963 2734 dbSNP
rs1284120094 2743 dbSNP
rs1298067556 2745 dbSNP
rs1351898058 2759 dbSNP
rs1380858375 2762 dbSNP
rs927326226 2772 dbSNP
rs549411938 2774 dbSNP
rs533587235 2776 dbSNP
rs1304234292 2783 dbSNP
rs1427127174 2792 dbSNP
rs1363092081 2811 dbSNP
rs1162127008 2814 dbSNP
rs1462104162 2816 dbSNP
rs1227417974 2817 dbSNP
rs1374402690 2821 dbSNP
rs1185419392 2824 dbSNP
rs190788222 2830 dbSNP
rs763438422 2838 dbSNP
rs1024139940 2839 dbSNP
rs773555974 2855 dbSNP
rs879165841 2862 dbSNP
rs879041783 2873 dbSNP
rs879121429 2880 dbSNP
rs186026422 2881 dbSNP
rs950527728 2889 dbSNP
rs1268162208 2891 dbSNP
rs1209292035 2893 dbSNP
rs1394332072 2893 dbSNP
rs1334141798 2894 dbSNP
rs1027478697 2907 dbSNP
rs1378235155 2914 dbSNP
rs1340202630 2917 dbSNP
rs1253254654 2920 dbSNP
rs1225554698 2922 dbSNP
rs1317620930 2927 dbSNP
rs1284331525 2940 dbSNP
rs1407214768 2942 dbSNP
rs1344161288 2958 dbSNP
rs796806673 2958 dbSNP
rs1323538784 2961 dbSNP
rs1391422706 2965 dbSNP
rs760046137 2968 dbSNP
rs796764069 2982 dbSNP
rs1198213438 2985 dbSNP
rs796181530 2988 dbSNP
rs995017383 2991 dbSNP
rs796980829 2992 dbSNP
rs1178303375 2995 dbSNP
rs1458103711 2996 dbSNP
rs540790900 2996 dbSNP
rs1479360376 3001 dbSNP
rs1180286522 3003 dbSNP
rs1236196257 3004 dbSNP
rs1428480690 3004 dbSNP
rs796749044 3007 dbSNP
rs527360404 3011 dbSNP
rs775126108 3016 dbSNP
rs1008526695 3017 dbSNP
rs1252775642 3018 dbSNP
rs1194232849 3021 dbSNP
rs1464628942 3025 dbSNP
rs891386069 3026 dbSNP
rs56319837 3028 dbSNP
rs559731682 3031 dbSNP
rs546371219 3035 dbSNP
rs1264053309 3037 dbSNP
rs1376716133 3038 dbSNP
rs1225712756 3044 dbSNP
rs1387680392 3049 dbSNP
rs1321891469 3052 dbSNP
rs1313539525 3058 dbSNP
rs891997077 3058 dbSNP
rs1054627957 3059 dbSNP
rs1200522079 3066 dbSNP
rs577515787 3069 dbSNP
rs1457190829 3070 dbSNP
rs1191505510 3079 dbSNP
rs1269774793 3080 dbSNP
rs1431590019 3082 dbSNP
rs927367367 3085 dbSNP
rs1414215872 3088 dbSNP
rs551236238 3092 dbSNP
rs537755150 3096 dbSNP
rs1336947802 3097 dbSNP
rs1400186238 3098 dbSNP
rs1458760009 3103 dbSNP
rs1326270707 3110 dbSNP
rs202093370 3118 dbSNP
rs1406325445 3119 dbSNP
rs1384772727 3123 dbSNP
rs1282233799 3129 dbSNP
rs765961863 3131 dbSNP
rs1338336005 3140 dbSNP
rs1219910909 3150 dbSNP
rs748693104 3162 dbSNP
rs1468003466 3166 dbSNP
rs917179842 3170 dbSNP
rs1306808761 3185 dbSNP
rs1222035373 3196 dbSNP
rs1266931655 3197 dbSNP
rs983362501 3206 dbSNP
rs1222116848 3208 dbSNP
rs1264133944 3211 dbSNP
rs1478873981 3222 dbSNP
rs377493967 3231 dbSNP
rs35517412 3233 dbSNP
rs772793734 3233 dbSNP
rs1423589177 3236 dbSNP
rs1424841225 3242 dbSNP
rs56276846 3243 dbSNP
rs1027939709 3256 dbSNP
rs778654783 3262 dbSNP
rs181679590 3268 dbSNP
rs964822854 3269 dbSNP
rs772992562 3271 dbSNP
rs189148151 3276 dbSNP
rs1275684237 3285 dbSNP
rs1361200737 3299 dbSNP
rs1017312843 3306 dbSNP
rs1243943670 3307 dbSNP
rs1314767752 3308 dbSNP
rs1319746933 3310 dbSNP
rs770664036 3321 dbSNP
rs1221435838 3331 dbSNP
rs1287041130 3339 dbSNP
rs1489373084 3342 dbSNP
rs1205832304 3346 dbSNP
rs1241652426 3351 dbSNP
rs112751832 3357 dbSNP
rs1278368048 3359 dbSNP
rs890097957 3367 dbSNP
rs548951433 3373 dbSNP
rs1353450535 3374 dbSNP
rs1380532796 3377 dbSNP
rs1010515258 3380 dbSNP
rs1295948376 3383 dbSNP
rs892040562 3385 dbSNP
rs1055040577 3388 dbSNP
rs566148133 3394 dbSNP
rs1304566027 3402 dbSNP
rs1376827804 3406 dbSNP
rs1238749324 3407 dbSNP
rs1382928516 3414 dbSNP
rs936144613 3424 dbSNP
rs1316661478 3430 dbSNP
rs1238326257 3432 dbSNP
rs1283787490 3433 dbSNP
rs1312896731 3437 dbSNP
rs1212269745 3440 dbSNP
rs368219372 3441 dbSNP
rs1236263916 3445 dbSNP
rs1461205767 3449 dbSNP
rs1179668037 3460 dbSNP
rs558510364 3461 dbSNP
rs1379346508 3471 dbSNP
rs1438220066 3473 dbSNP
rs1156488410 3474 dbSNP
rs866900821 3477 dbSNP
rs1177560277 3478 dbSNP
rs144387638 3478 dbSNP
rs749111702 3486 dbSNP
rs538822935 3490 dbSNP
rs917273828 3495 dbSNP
rs1378883235 3500 dbSNP
rs1444277616 3506 dbSNP
rs184013342 3512 dbSNP
rs929257500 3518 dbSNP
rs1958281 3521 dbSNP
rs973644978 3522 dbSNP
rs1322900208 3523 dbSNP
rs769249802 3526 dbSNP
rs1419118267 3527 dbSNP
rs747493803 3533 dbSNP
rs536114089 3535 dbSNP
rs150926647 3539 dbSNP
rs1456755261 3542 dbSNP
rs910305818 3543 dbSNP
rs780389574 3552 dbSNP
rs1478114772 3555 dbSNP
rs746542064 3567 dbSNP
rs1237173603 3571 dbSNP
rs140632105 3572 dbSNP
rs1426673274 3572 dbSNP
rs779595706 3580 dbSNP
rs547355013 3581 dbSNP
rs1468800274 3582 dbSNP
rs1171353974 3586 dbSNP
rs1284453177 3591 dbSNP
rs1216551207 3598 dbSNP
rs954425909 3608 dbSNP
rs1293330219 3611 dbSNP
rs1243231101 3616 dbSNP
rs1331913877 3626 dbSNP
rs1438947288 3630 dbSNP
rs1377972671 3633 dbSNP
rs1270462148 3634 dbSNP
rs1219304123 3647 dbSNP
rs527436838 3649 dbSNP
rs868066161 3654 dbSNP
rs1432601400 3658 dbSNP
rs1324500929 3659 dbSNP
rs1290970143 3668 dbSNP
rs1020667931 3669 dbSNP
rs559848412 3669 dbSNP
rs956492747 3669 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cuuagugUUUACAGGAAUUAUc 5'
                 ||:| ||:|||||| 
Target 5' ------aAAGUAUCUUUAAUAa 3'
 		1 - 16
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000261249.6 | 3UTR | AAAGUAUCUUUAAUAAAGCUGGAUACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-4477a Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055843 PLEKHA1 pleckstrin homology domain containing A1 2 10
MIRT061259 AMOTL1 angiomotin like 1 2 4
MIRT071895 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT076933 MLLT6 MLLT6, PHD finger containing 2 2
MIRT078652 ICT1 mitochondrial ribosomal protein L58 2 2
MIRT083633 PRNP prion protein 2 2
MIRT091629 RPL15 ribosomal protein L15 2 4
MIRT107076 PPP6C protein phosphatase 6 catalytic subunit 2 2
MIRT111191 TRIM33 tripartite motif containing 33 2 2
MIRT114515 ARF6 ADP ribosylation factor 6 2 2
MIRT175250 PSAT1 phosphoserine aminotransferase 1 2 4
MIRT175430 ACSL4 acyl-CoA synthetase long chain family member 4 2 2
MIRT178687 FAM102B family with sequence similarity 102 member B 2 2
MIRT189771 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT229450 RPL10 ribosomal protein L10 2 2
MIRT244899 PHF6 PHD finger protein 6 2 2
MIRT249189 AKIRIN1 akirin 1 2 8
MIRT261134 TRIM8 tripartite motif containing 8 2 2
MIRT275561 ZIC5 Zic family member 5 2 4
MIRT275652 ABHD13 abhydrolase domain containing 13 2 2
MIRT288082 UTP18 UTP18, small subunit processome component 2 2
MIRT303605 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT307924 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT316787 FOXC1 forkhead box C1 2 2
MIRT326910 SCML2 Scm polycomb group protein like 2 2 2
MIRT327713 SPIN4 spindlin family member 4 2 2
MIRT331632 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT342506 TMOD3 tropomodulin 3 2 4
MIRT354470 LRRC58 leucine rich repeat containing 58 2 2
MIRT378711 TRIM24 tripartite motif containing 24 2 2
MIRT407462 YDJC YdjC chitooligosaccharide deacetylase homolog 2 2
MIRT408226 SMAD5 SMAD family member 5 2 4
MIRT441824 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT442783 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT443184 NHS NHS actin remodeling regulator 2 4
MIRT447615 CUL3 cullin 3 2 2
MIRT450156 DSEL dermatan sulfate epimerase-like 2 2
MIRT454801 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 2 2
MIRT463050 ZNF644 zinc finger protein 644 2 2
MIRT467400 SOCS3 suppressor of cytokine signaling 3 2 2
MIRT468174 SGMS1 sphingomyelin synthase 1 2 2
MIRT468949 RPS14 ribosomal protein S14 2 6
MIRT469835 R3HDM4 R3H domain containing 4 2 2
MIRT470724 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT470902 PLIN3 perilipin 3 2 2
MIRT472467 NAPG NSF attachment protein gamma 2 12
MIRT472602 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT492350 SEMA7A semaphorin 7A (John Milton Hagen blood group) 2 2
MIRT493840 FOXN3 forkhead box N3 2 4
MIRT496318 DOCK9 dedicator of cytokinesis 9 2 2
MIRT500159 CLEC2D C-type lectin domain family 2 member D 2 8
MIRT500535 XPO4 exportin 4 2 4
MIRT503916 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504003 SAT1 spermidine/spermine N1-acetyltransferase 1 2 4
MIRT505647 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT506574 MIER3 MIER family member 3 2 4
MIRT506945 HS3ST3B1 heparan sulfate-glucosamine 3-sulfotransferase 3B1 2 4
MIRT508196 RPS19 ribosomal protein S19 2 6
MIRT511417 HSPA13 heat shock protein family A (Hsp70) member 13 2 4
MIRT512326 ACTB actin beta 2 4
MIRT515376 RPL7 ribosomal protein L7 2 2
MIRT520422 TUBG1 tubulin gamma 1 2 4
MIRT524844 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT526320 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526561 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT528027 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT529874 RBM43 RNA binding motif protein 43 2 2
MIRT530826 CLEC4D C-type lectin domain family 4 member D 2 2
MIRT531334 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT532068 CCNB1 cyclin B1 2 4
MIRT532870 ZNF566 zinc finger protein 566 2 2
MIRT535580 NUP35 nucleoporin 35 2 2
MIRT537644 ERGIC2 ERGIC and golgi 2 2 4
MIRT537725 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT538894 BRI3BP BRI3 binding protein 2 2
MIRT538945 BMP2K BMP2 inducible kinase 2 2
MIRT540703 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT543210 TMEM117 transmembrane protein 117 2 3
MIRT543357 LYRM2 LYR motif containing 2 2 2
MIRT544905 CLSPN claspin 2 2
MIRT545532 ARF3 ADP ribosylation factor 3 2 2
MIRT546446 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT546882 PURB purine rich element binding protein B 2 4
MIRT547440 MED13 mediator complex subunit 13 2 2
MIRT548027 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548673 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT550435 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT551850 RPS3 ribosomal protein S3 2 2
MIRT556072 MRFAP1 Morf4 family associated protein 1 2 2
MIRT556554 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT557132 HOXA13 homeobox A13 2 2
MIRT557875 FEM1B fem-1 homolog B 2 4
MIRT558146 ELK4 ELK4, ETS transcription factor 2 2
MIRT558862 CD2AP CD2 associated protein 2 2
MIRT558884 CCNE1 cyclin E1 2 4
MIRT558907 CBX5 chromobox 5 2 2
MIRT559175 BRAP BRCA1 associated protein 2 2
MIRT560860 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561729 PPIF peptidylprolyl isomerase F 2 2
MIRT564024 CEBPB CCAAT/enhancer binding protein beta 2 2
MIRT564366 TRMT5 tRNA methyltransferase 5 2 2
MIRT564609 ZNF703 zinc finger protein 703 2 2
MIRT565494 AZF1 azoospermia factor 1 2 2
MIRT565577 SLC6A8 solute carrier family 6 member 8 2 2
MIRT566947 LEPROT leptin receptor overlapping transcript 2 2
MIRT567293 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT567308 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT568048 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT571807 PHF19 PHD finger protein 19 2 2
MIRT609234 RBM23 RNA binding motif protein 23 2 2
MIRT610328 SSX5 SSX family member 5 2 2
MIRT611428 UGT8 UDP glycosyltransferase 8 2 4
MIRT611709 SLFN13 schlafen family member 13 2 2
MIRT612069 CEP135 centrosomal protein 135 2 4
MIRT617676 JRKL JRK like 2 2
MIRT623684 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT635634 PRR15L proline rich 15 like 2 2
MIRT636422 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT637011 GPATCH11 G-patch domain containing 11 2 2
MIRT644150 C4orf3 chromosome 4 open reading frame 3 2 2
MIRT648562 MEMO1 mediator of cell motility 1 2 2
MIRT650752 WNT16 Wnt family member 16 2 2
MIRT651914 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT653556 SLC38A7 solute carrier family 38 member 7 2 2
MIRT692277 XRN2 5'-3' exoribonuclease 2 2 2
MIRT697650 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT703876 ERCC6 ERCC excision repair 6, chromatin remodeling factor 2 2
MIRT704615 CLIP1 CAP-Gly domain containing linker protein 1 2 2
MIRT708562 BBOX1 gamma-butyrobetaine hydroxylase 1 2 2
MIRT709614 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT712955 SGCD sarcoglycan delta 2 2
MIRT713502 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT720239 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT724255 GLUD1 glutamate dehydrogenase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4477a Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4477a Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4477a Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)

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