pre-miRNA Information
pre-miRNA hsa-mir-3133   
Genomic Coordinates chr2: 241477905 - 241477982
Description Homo sapiens miR-3133 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3133
Sequence 10| UAAAGAACUCUUAAAACCCAAU |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1030052469 1 dbSNP
rs955010137 12 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol BAAT   
Synonyms BACAT, BAT
Description bile acid-CoA:amino acid N-acyltransferase
Transcript NM_001127610   
Other Transcripts NM_001701   
Expression
Putative miRNA Targets on BAAT
3'UTR of BAAT
(miRNA target sites are highlighted)
>BAAT|NM_001127610|3'UTR
   1 GAAGACTAGATATTCCTAGAAAATAAAGAAGCAAATCTCTTTACCGGGACCTTCTCTCAATTTTCATGGCGGAATGTCTC
  81 CCCCAGCTGCCACACACACATTTTGTATTAATTTTAATGATTAAAAAGAGCATAGGGTAAAAACCTGATATTTCACTTAT
 161 ACTGCATAACAAGCTAACCAAACTGGACATGGTGAATAAATCATAAAACAAATCATTTTACTTATTATTTACATGACTTT
 241 TCTTTCCATCAGGTCTTCTAAATAGGACTGAGGTATAGTACACTGGCAAAAATAAGAAAAGGCAAACAAGAATAGCACCA
 321 AAGTAACAGATATAAAACCAAATACCATGTCAGAAAACACTATATAGTAAGAATTTATCAGATTAGAGCAGCAGGAGAAA
 401 ATTAATACTAAATTATAATCATTTTAGTGATATTTTTCAACTTCACCACAGTAACTTTGCAACATCATTTTTCATTTGTG
 481 GGGTAGTAAAATTCATGTCAAAAAGGAAAGAAGGAATGGAGGAGGTCAGTTAGTTCATTGCAATAAATTACCTCTTCAGT
 561 TCTTAAAAACATGCCCATTGGCACATAACTGAGACATAATAACTAAGACTGGAAGAGCCTTGGTTTAAGTTATGAAGCAA
 641 ATTAAAATGGAAAATACAAGAAAATAGAACCAATTAGGTTGAAAATGCCCCTTACTGAAAATCTGTATTAAAAATAAAAT
 721 TAATAAAAGTAAAAAATAAAAATAGAAACACAACTCTACTAGTACAGGCTAGCCTGGGGAGTTTGATAAACTGAGTGATT
 801 GGGTCAACTATCACTGTACTTCCATAATGAATTTCTTCAGTCATGTTAGAGTAGCACATGAATGTGAGCTCTATAAGGAC
 881 AGGTACTATATTTCCGTAAGACCCAATAGTTACTGTACATCCCATAAATAAAAAATACTTTAGTTTGCTAACCAACTGAA
 961 TATATGAGGACTGCATGTAATTCAACCACATGGTTGTTTGCTGTACAGTCCTTTGCAAATATTAAAAAATTTTTTTTGCT
1041 ATAAGGCTTTGATCATATAGTCCTCATAGCAACATAACTACCATCTAGCATGTACCACATTTTGCAAGACTTTAAGTTCA
1121 ACATTCCAAACTGCCAATTTGTATTATGTCCAAATGCAGTATCCTTGAGGAATATAGTGGGTCAGTTAAATATCTAGAGA
1201 CATACAAACATCTGCTAATTCATCTCATTGAGATGGATCATTCTGATCTCCATCATCCACCCACTTTTCATCAGCTTCTC
1281 CTACTTCATTCTCCTCATAGTCTTTATCATGAGGGATTCTGTATCCTGTCTCTCATCTACACTTGCTGGCCTTCCTGGTT
1361 GTGATTTATTGGAACAGTCTACACAAAAACCATAGGGTCAAGATCCATGTCTTACTCCAACACTGGCTGCTAACATGATC
1441 TTACATACCATACATTTGCATTTTTATCCTTCTTGTGCACCAAGAAATGTTTTCTTACATGTTTTCTCCAAGTGTAAAAA
1521 GTCACAGCTAAATGATCTCACTCCTGTATGAATAAGCAAGTGCTTTTTTAGTGTTTGTTTGCATTTGGCTGCATAGCTAC
1601 AATGATGGCATTTTAACTTATTCATGATTAGAGATGATGATATGGTTTGGATATTTGTTGTGCCCAAATTTCATGCTGAA
1681 ATGTAATCCCTAGTGTTGGAGGTGAGGCCTGGTGGGAGTTGTTTGGGTCATGGGGGTGGACCCTCATGGCTTGGTACTGT
1761 CCTCATGAGAGTATGATAGTGAGTGAGTTCTCAAGAGATATGACTGTTTAAAAGTGTGTGGCACCTCCTCCCCATCCTCA
1841 CACTCTTTCTTGCCTCCTCTCTCGCCATGTGAGATGCCTCCTCGCTGTTCACCTGCTGCCATGATTGTAAACTTCCTGAG
1921 GCCTCCCCAGAAGCCAAGTAGATGCAAGCATTATGCTTCTGTAAAGCCTGCAGGACCATGATCCAATTAAATCTCTTTTC
2001 TTTATAAATTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uaACC--CAAA--AU-UCUCAAGAAAu 5'
            |||  ||||  |: | ||| |||| 
Target 5' caTGGTTGTTTGCTGTACAGTCCTTTg 3'
989 - 1015 128.00 -6.10
2
miRNA  3' uaAC-CC--AAAAUUCUCAAGAAAu 5'
            || ||  |  |::||||| ||| 
Target 5' ggTGAGGCCTGGTGGGAGTTGTTTg 3'
1701 - 1725 126.00 -11.50
3
miRNA  3' uaacCCAAAAUUC--UCAAGAAAu 5'
              ||   | ||  ||||| || 
Target 5' tggaGGAGGTCAGTTAGTTCATTg 3'
517 - 540 116.00 -5.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
364275 46 ClinVar
913862 95 ClinVar
364274 160 ClinVar
364273 199 ClinVar
913487 224 ClinVar
913486 312 ClinVar
913485 365 ClinVar
913484 426 ClinVar
364272 459 ClinVar
913483 538 ClinVar
912354 573 ClinVar
364271 589 ClinVar
364270 611 ClinVar
912353 624 ClinVar
912352 660 ClinVar
912351 668 ClinVar
364269 787 ClinVar
912350 831 ClinVar
364268 895 ClinVar
915071 936 ClinVar
364267 948 ClinVar
364266 955 ClinVar
364265 1029 ClinVar
364264 1030 ClinVar
364263 1041 ClinVar
915070 1041 ClinVar
913814 1085 ClinVar
364262 1090 ClinVar
913813 1130 ClinVar
364261 1136 ClinVar
364260 1139 ClinVar
364259 1164 ClinVar
364258 1177 ClinVar
364257 1206 ClinVar
364256 1218 ClinVar
913812 1307 ClinVar
364255 1316 ClinVar
913811 1341 ClinVar
913434 1422 ClinVar
364254 1458 ClinVar
364253 1475 ClinVar
913433 1528 ClinVar
913432 1557 ClinVar
364252 1575 ClinVar
913431 1597 ClinVar
913430 1617 ClinVar
364251 1701 ClinVar
912312 1712 ClinVar
364250 1824 ClinVar
912311 1828 ClinVar
912310 1864 ClinVar
364249 1884 ClinVar
364248 1886 ClinVar
364247 1890 ClinVar
364246 1998 ClinVar
COSN30116587 15 COSMIC
COSN30123672 19 COSMIC
COSN30149478 19 COSMIC
COSN31547896 28 COSMIC
COSN31517349 37 COSMIC
COSN28733457 46 COSMIC
COSN30529561 54 COSMIC
COSN30536664 58 COSMIC
COSN30170430 65 COSMIC
COSN30168262 70 COSMIC
COSN14362037 71 COSMIC
COSN2302021 73 COSMIC
COSN30118742 119 COSMIC
COSN30115975 128 COSMIC
COSN30543787 185 COSMIC
COSN5117291 209 COSMIC
COSN6372706 274 COSMIC
COSN31565523 348 COSMIC
COSN16160477 351 COSMIC
COSN20091996 365 COSMIC
COSN31607404 371 COSMIC
COSN31549587 411 COSMIC
COSN31488541 420 COSMIC
COSN15020502 421 COSMIC
COSN31546204 506 COSMIC
COSN31550556 519 COSMIC
COSN31538130 599 COSMIC
COSN30540143 643 COSMIC
COSN31539661 703 COSMIC
COSN31516794 713 COSMIC
COSN31548714 733 COSMIC
COSN32064263 785 COSMIC
COSN2302020 888 COSMIC
COSN31570272 939 COSMIC
COSN28674235 948 COSMIC
COSN17313057 1029 COSMIC
COSN31530377 1030 COSMIC
COSN31960095 1159 COSMIC
COSN30165232 1221 COSMIC
COSN31562774 1314 COSMIC
COSN8519734 1339 COSMIC
COSN31490192 1417 COSMIC
COSN28805901 1458 COSMIC
COSN30167760 1469 COSMIC
COSN31568473 1472 COSMIC
COSN31568775 1473 COSMIC
COSN28803146 1475 COSMIC
COSN31485721 1484 COSMIC
COSN30532960 1529 COSMIC
COSN31604969 1534 COSMIC
COSN8519733 1537 COSMIC
COSN31482392 1552 COSMIC
COSN30135872 1706 COSMIC
COSN8114455 1903 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs761407774 2 dbSNP
rs1468643759 4 dbSNP
rs1039229879 9 dbSNP
rs1245364888 10 dbSNP
rs1471339180 11 dbSNP
rs776342301 15 dbSNP
rs1178110335 18 dbSNP
rs1263688768 19 dbSNP
rs1471890173 29 dbSNP
rs768988768 31 dbSNP
rs761251037 32 dbSNP
rs1393891728 35 dbSNP
rs775679039 37 dbSNP
rs186840783 44 dbSNP
rs375861741 45 dbSNP
rs2229594 46 dbSNP
rs1418854362 50 dbSNP
rs1268706949 63 dbSNP
rs558869188 70 dbSNP
rs753090867 71 dbSNP
rs909443614 82 dbSNP
rs1226427318 84 dbSNP
rs1294609416 85 dbSNP
rs1334867096 89 dbSNP
rs545328376 93 dbSNP
rs781423078 100 dbSNP
rs929291596 101 dbSNP
rs959422340 106 dbSNP
rs1251543813 109 dbSNP
rs928694905 110 dbSNP
rs1410102778 118 dbSNP
rs981895874 119 dbSNP
rs1027384513 131 dbSNP
rs35109318 141 dbSNP
rs879185133 141 dbSNP
rs1161508270 156 dbSNP
rs1165837576 157 dbSNP
rs1421986765 159 dbSNP
rs139712344 160 dbSNP
rs1057380 162 dbSNP
rs181633288 166 dbSNP
rs1257726755 173 dbSNP
rs1369653883 176 dbSNP
rs1407943730 177 dbSNP
rs1314602740 182 dbSNP
rs961417358 184 dbSNP
rs1186958795 189 dbSNP
rs1057381 195 dbSNP
rs151035029 199 dbSNP
rs1135370 202 dbSNP
rs957226162 207 dbSNP
rs561091010 209 dbSNP
rs1031537880 211 dbSNP
rs1008386626 214 dbSNP
rs1205128950 231 dbSNP
rs1340424932 236 dbSNP
rs1213686027 237 dbSNP
rs1307031019 242 dbSNP
rs1442333438 246 dbSNP
rs1270944487 252 dbSNP
rs998821045 255 dbSNP
rs1475870992 256 dbSNP
rs890746215 263 dbSNP
rs1389354812 265 dbSNP
rs1427624627 267 dbSNP
rs1335769309 270 dbSNP
rs1402898226 271 dbSNP
rs1292830521 273 dbSNP
rs190066838 275 dbSNP
rs891293356 279 dbSNP
rs1327620831 281 dbSNP
rs1435396680 285 dbSNP
rs1028600224 293 dbSNP
rs374514182 302 dbSNP
rs1296370398 307 dbSNP
rs41281025 312 dbSNP
rs1237028679 315 dbSNP
rs371999195 317 dbSNP
rs1183884953 323 dbSNP
rs1054506643 324 dbSNP
rs1038147182 327 dbSNP
rs534868465 331 dbSNP
rs934429105 332 dbSNP
rs759464231 333 dbSNP
rs555117783 347 dbSNP
rs1447614133 348 dbSNP
rs1442079787 349 dbSNP
rs796932264 359 dbSNP
rs765643465 361 dbSNP
rs1455736357 362 dbSNP
rs1451257296 363 dbSNP
rs565981676 365 dbSNP
rs770717464 367 dbSNP
rs1048446700 371 dbSNP
rs915727163 373 dbSNP
rs1457351933 380 dbSNP
rs928594887 388 dbSNP
rs991448703 392 dbSNP
rs1319281927 408 dbSNP
rs1362664866 414 dbSNP
rs930525685 419 dbSNP
rs1474140852 423 dbSNP
rs770039694 426 dbSNP
rs1177758033 433 dbSNP
rs948782427 439 dbSNP
rs1330835027 444 dbSNP
rs185700985 448 dbSNP
rs1231064475 450 dbSNP
rs961353364 454 dbSNP
rs1223870180 455 dbSNP
rs41281023 459 dbSNP
rs1208253177 465 dbSNP
rs986830851 467 dbSNP
rs1266311643 469 dbSNP
rs955567451 480 dbSNP
rs1028881056 484 dbSNP
rs997127611 498 dbSNP
rs1272852102 500 dbSNP
rs1214494172 506 dbSNP
rs1231684764 507 dbSNP
rs893340050 510 dbSNP
rs1432348315 516 dbSNP
rs1196447492 524 dbSNP
rs1032686170 525 dbSNP
rs1472873126 526 dbSNP
rs762247825 538 dbSNP
rs1385729204 542 dbSNP
rs1462710390 547 dbSNP
rs1308134852 549 dbSNP
rs1223532624 550 dbSNP
rs1371814041 551 dbSNP
rs902848281 579 dbSNP
rs1385501169 584 dbSNP
rs41274983 589 dbSNP
rs558094092 589 dbSNP
rs1228312369 591 dbSNP
rs1295738448 603 dbSNP
rs1013997484 604 dbSNP
rs1442539906 607 dbSNP
rs41274981 611 dbSNP
rs1056010439 613 dbSNP
rs930578618 618 dbSNP
rs529720014 621 dbSNP
rs139963547 624 dbSNP
rs963734376 635 dbSNP
rs1181338804 657 dbSNP
rs371625754 657 dbSNP
rs1475921155 660 dbSNP
rs760589835 668 dbSNP
rs1367542923 670 dbSNP
rs1005346276 691 dbSNP
rs908539870 693 dbSNP
rs1371542476 698 dbSNP
rs1409799404 704 dbSNP
rs1192837777 705 dbSNP
rs1306680276 707 dbSNP
rs1454818199 725 dbSNP
rs986859859 727 dbSNP
rs1212113803 737 dbSNP
rs887907692 743 dbSNP
rs1047901656 756 dbSNP
rs1466443288 758 dbSNP
rs1229873537 759 dbSNP
rs1276573637 775 dbSNP
rs994129398 776 dbSNP
rs181417867 787 dbSNP
rs1484161456 788 dbSNP
rs921446266 796 dbSNP
rs907470131 802 dbSNP
rs1254864628 803 dbSNP
rs1421746772 804 dbSNP
rs1215533365 810 dbSNP
rs1172056635 813 dbSNP
rs1315488615 819 dbSNP
rs1046427884 824 dbSNP
rs1467004175 826 dbSNP
rs948710263 847 dbSNP
rs1235623192 857 dbSNP
rs975953562 868 dbSNP
rs1384178845 873 dbSNP
rs577168710 880 dbSNP
rs1302091268 882 dbSNP
rs1033718581 886 dbSNP
rs1054429085 891 dbSNP
rs16936057 895 dbSNP
rs373585277 896 dbSNP
rs1023946264 902 dbSNP
rs977299473 905 dbSNP
rs1272131125 908 dbSNP
rs955404917 913 dbSNP
rs1014029967 916 dbSNP
rs1254952950 925 dbSNP
rs1452867132 931 dbSNP
rs894175515 936 dbSNP
rs866621942 937 dbSNP
rs7043029 948 dbSNP
rs41301517 955 dbSNP
rs1435239001 958 dbSNP
rs1394355245 964 dbSNP
rs1191867359 965 dbSNP
rs1187067605 968 dbSNP
rs1427688815 976 dbSNP
rs1415597482 987 dbSNP
rs1016614502 988 dbSNP
rs1451341957 990 dbSNP
rs576308259 1002 dbSNP
rs1455433962 1003 dbSNP
rs1036268224 1011 dbSNP
rs1388186275 1012 dbSNP
rs1433161433 1024 dbSNP
rs74606977 1029 dbSNP
rs543786788 1030 dbSNP
rs1310314437 1031 dbSNP
rs551905862 1031 dbSNP
rs1045974598 1038 dbSNP
rs1464208168 1038 dbSNP
rs907393727 1038 dbSNP
rs1206418877 1040 dbSNP
rs41316534 1041 dbSNP
rs554642026 1050 dbSNP
rs1278731651 1055 dbSNP
rs1231456865 1057 dbSNP
rs1423703391 1057 dbSNP
rs1327668236 1058 dbSNP
rs1473820237 1060 dbSNP
rs1160084891 1067 dbSNP
rs573463713 1071 dbSNP
rs534833120 1083 dbSNP
rs1455888880 1084 dbSNP
rs377765138 1085 dbSNP
rs76498584 1090 dbSNP
rs1436956082 1094 dbSNP
rs1314519640 1098 dbSNP
rs1292669815 1107 dbSNP
rs1365406487 1113 dbSNP
rs924701513 1119 dbSNP
rs200796812 1123 dbSNP
rs536464923 1130 dbSNP
rs886063282 1136 dbSNP
rs1226001048 1137 dbSNP
rs188189145 1139 dbSNP
rs977682350 1143 dbSNP
rs1451764594 1147 dbSNP
rs922465345 1148 dbSNP
rs975289378 1155 dbSNP
rs1484355856 1157 dbSNP
rs967599371 1162 dbSNP
rs570341484 1164 dbSNP
rs1013893119 1170 dbSNP
rs1165024168 1172 dbSNP
rs531601325 1175 dbSNP
rs35538457 1177 dbSNP
rs1404912843 1181 dbSNP
rs958398145 1182 dbSNP
rs1463649554 1183 dbSNP
rs1363465128 1197 dbSNP
rs1411634079 1201 dbSNP
rs781579686 1204 dbSNP
rs760757882 1206 dbSNP
rs1349747357 1210 dbSNP
rs1407472648 1213 dbSNP
rs550241219 1218 dbSNP
rs529692710 1228 dbSNP
rs567316584 1235 dbSNP
rs982303668 1237 dbSNP
rs971588366 1243 dbSNP
rs547506053 1260 dbSNP
rs527386727 1264 dbSNP
rs1206261533 1270 dbSNP
rs565046115 1273 dbSNP
rs1485516319 1284 dbSNP
rs1482325391 1286 dbSNP
rs1189709651 1290 dbSNP
rs1238118064 1291 dbSNP
rs1472623391 1293 dbSNP
rs1004761067 1297 dbSNP
rs890340160 1298 dbSNP
rs1051625702 1306 dbSNP
rs111954077 1307 dbSNP
rs1207917569 1311 dbSNP
rs1340916057 1313 dbSNP
rs755320451 1316 dbSNP
rs1408139124 1332 dbSNP
rs545205256 1341 dbSNP
rs1340525370 1343 dbSNP
rs894748787 1345 dbSNP
rs936071039 1346 dbSNP
rs1282098871 1353 dbSNP
rs926127084 1354 dbSNP
rs1229615362 1358 dbSNP
rs1274281544 1359 dbSNP
rs1340743294 1364 dbSNP
rs1305442593 1368 dbSNP
rs531442189 1374 dbSNP
rs1279477405 1375 dbSNP
rs1441952493 1384 dbSNP
rs1185453049 1390 dbSNP
rs371076104 1393 dbSNP
rs1000137492 1394 dbSNP
rs903215104 1395 dbSNP
rs1041801133 1396 dbSNP
rs1389306011 1396 dbSNP
rs934070622 1411 dbSNP
rs1474414397 1415 dbSNP
rs1174217122 1416 dbSNP
rs751970647 1417 dbSNP
rs1402775679 1419 dbSNP
rs1393040270 1422 dbSNP
rs1397060967 1428 dbSNP
rs778507457 1435 dbSNP
rs1390386530 1440 dbSNP
rs1039571361 1443 dbSNP
rs1297710398 1444 dbSNP
rs946286759 1446 dbSNP
rs917545373 1448 dbSNP
rs59311341 1458 dbSNP
rs1420309828 1462 dbSNP
rs542605798 1466 dbSNP
rs574486400 1468 dbSNP
rs10120345 1475 dbSNP
rs1235838364 1475 dbSNP
rs541077339 1479 dbSNP
rs984069873 1481 dbSNP
rs1465562447 1482 dbSNP
rs973581382 1486 dbSNP
rs1247229188 1494 dbSNP
rs1445098741 1496 dbSNP
rs1184668352 1510 dbSNP
rs929652235 1510 dbSNP
rs1438925000 1516 dbSNP
rs1477616666 1516 dbSNP
rs1173715950 1521 dbSNP
rs918289127 1523 dbSNP
rs572228256 1528 dbSNP
rs1194744692 1529 dbSNP
rs1479361869 1543 dbSNP
rs1319512722 1548 dbSNP
rs970894631 1549 dbSNP
rs1014719804 1556 dbSNP
rs1458339149 1557 dbSNP
rs1331104289 1570 dbSNP
rs886063281 1575 dbSNP
rs1004708583 1582 dbSNP
rs571181388 1597 dbSNP
rs1033215968 1599 dbSNP
rs1000893545 1603 dbSNP
rs1030227602 1608 dbSNP
rs1259208518 1609 dbSNP
rs1489554232 1610 dbSNP
rs146019667 1617 dbSNP
rs1336282246 1621 dbSNP
rs1267782727 1632 dbSNP
rs899842421 1636 dbSNP
rs1306130614 1646 dbSNP
rs1197158078 1650 dbSNP
rs752611993 1657 dbSNP
rs998253271 1667 dbSNP
rs767534542 1680 dbSNP
rs1157703808 1682 dbSNP
rs759370488 1687 dbSNP
rs901276279 1687 dbSNP
rs1396783633 1695 dbSNP
rs144108294 1701 dbSNP
rs942500729 1705 dbSNP
rs1461105454 1711 dbSNP
rs1390436469 1712 dbSNP
rs936086483 1718 dbSNP
rs888317099 1719 dbSNP
rs904572427 1723 dbSNP
rs1160657579 1731 dbSNP
rs1041815303 1735 dbSNP
rs201382376 1737 dbSNP
rs1046504266 1756 dbSNP
rs1323798016 1765 dbSNP
rs1245774870 1766 dbSNP
rs1265859451 1767 dbSNP
rs1358420516 1786 dbSNP
rs1363746365 1789 dbSNP
rs202139238 1799 dbSNP
rs946221314 1805 dbSNP
rs917409597 1809 dbSNP
rs993500423 1819 dbSNP
rs534889362 1824 dbSNP
rs1247789896 1828 dbSNP
rs916315191 1837 dbSNP
rs1367492546 1843 dbSNP
rs926957491 1850 dbSNP
rs1170808686 1854 dbSNP
rs990563359 1863 dbSNP
rs567579333 1864 dbSNP
rs1287256974 1866 dbSNP
rs1396865770 1867 dbSNP
rs1312313386 1868 dbSNP
rs963009579 1869 dbSNP
rs1014667344 1870 dbSNP
rs979001616 1876 dbSNP
rs968048951 1877 dbSNP
rs998576281 1883 dbSNP
rs10120225 1884 dbSNP
rs10123392 1886 dbSNP
rs386736842 1887 dbSNP
rs886063280 1890 dbSNP
rs1236786091 1893 dbSNP
rs1030090285 1901 dbSNP
rs10989482 1916 dbSNP
rs750898041 1917 dbSNP
rs996515344 1925 dbSNP
rs1391153142 1930 dbSNP
rs964618136 1933 dbSNP
rs769794858 1934 dbSNP
rs1048713083 1936 dbSNP
rs1168910718 1944 dbSNP
rs1361364018 1954 dbSNP
rs1466631297 1956 dbSNP
rs765837706 1964 dbSNP
rs1373358887 1971 dbSNP
rs1404276350 1974 dbSNP
rs547437486 1976 dbSNP
rs1304268159 1990 dbSNP
rs778479188 1995 dbSNP
rs897043106 1997 dbSNP
rs10123365 1998 dbSNP
rs949062101 2000 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000259407.2 | 3UTR | CCAAUUAAAUCUCUUUUCUUUAUAAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
Click to see details
174 hsa-miR-3133 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057804 SLC30A7 solute carrier family 30 member 7 2 2
MIRT075401 ZFHX3 zinc finger homeobox 3 2 2
MIRT088350 MAPRE3 microtubule associated protein RP/EB family member 3 2 6
MIRT107288 FAM73B mitoguardin 2 2 2
MIRT141571 ABHD2 abhydrolase domain containing 2 2 2
MIRT161036 CDV3 CDV3 homolog 2 2
MIRT167732 RNF146 ring finger protein 146 8 3
MIRT209559 PAK2 p21 (RAC1) activated kinase 2 2 2
MIRT214631 SMAD5 SMAD family member 5 2 8
MIRT258393 KIAA0895 KIAA0895 2 2
MIRT272744 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT309347 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 6
MIRT329705 SCD stearoyl-CoA desaturase 2 2
MIRT336556 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT363351 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT386753 TAOK1 TAO kinase 1 2 2
MIRT441580 EXOC5 exocyst complex component 5 2 2
MIRT441735 SEPT8 septin 8 2 2
MIRT441817 LRRC40 leucine rich repeat containing 40 2 2
MIRT442180 TRIM59 tripartite motif containing 59 2 4
MIRT442277 TLX3 T-cell leukemia homeobox 3 2 2
MIRT442489 TBC1D19 TBC1 domain family member 19 2 2
MIRT443242 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443270 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT444114 CEPT1 choline/ethanolamine phosphotransferase 1 2 2
MIRT444725 LAMA2 laminin subunit alpha 2 2 2
MIRT445346 FAM169A family with sequence similarity 169 member A 2 2
MIRT445693 GJB1 gap junction protein beta 1 2 2
MIRT446051 CDC73 cell division cycle 73 2 2
MIRT447746 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT447955 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT449199 ZNF623 zinc finger protein 623 2 2
MIRT449564 GPC5 glypican 5 2 2
MIRT450938 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT459811 POTED POTE ankyrin domain family member D 2 8
MIRT461692 ZNF426 zinc finger protein 426 2 2
MIRT462014 SNRNP27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 2 2
MIRT465150 TSC22D2 TSC22 domain family member 2 2 2
MIRT467144 SREK1IP1 SREK1 interacting protein 1 2 2
MIRT474929 KCTD15 potassium channel tetramerization domain containing 15 2 8
MIRT475118 IPPK inositol-pentakisphosphate 2-kinase 2 2
MIRT476844 FIGN fidgetin, microtubule severing factor 2 10
MIRT477336 EPHA2 EPH receptor A2 2 2
MIRT477853 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 2 2
MIRT481113 B2M beta-2-microglobulin 2 2
MIRT481296 ATP6V1B2 ATPase H+ transporting V1 subunit B2 2 10
MIRT485094 SLC30A1 solute carrier family 30 member 1 2 4
MIRT491908 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 2
MIRT492458 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 8
MIRT493341 LAPTM4A lysosomal protein transmembrane 4 alpha 2 12
MIRT494771 AP1G1 adaptor related protein complex 1 gamma 1 subunit 2 2
MIRT497837 GPR26 G protein-coupled receptor 26 2 2
MIRT497958 DGAT2 diacylglycerol O-acyltransferase 2 2 2
MIRT498445 INO80D INO80 complex subunit D 2 2
MIRT498997 HAT1 histone acetyltransferase 1 2 10
MIRT499257 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT500067 SFT2D2 SFT2 domain containing 2 2 4
MIRT501385 RBFOX2 RNA binding protein, fox-1 homolog 2 2 10
MIRT503084 BTG2 BTG anti-proliferation factor 2 2 4
MIRT503272 SLC7A5 solute carrier family 7 member 5 2 2
MIRT504341 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT505453 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 6
MIRT505905 RIMS3 regulating synaptic membrane exocytosis 3 2 6
MIRT507917 C7orf60 base methyltransferase of 25S rRNA 2 homolog 2 6
MIRT508174 FRK fyn related Src family tyrosine kinase 2 4
MIRT508287 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT509232 KIF14 kinesin family member 14 2 6
MIRT509481 GNL3L G protein nucleolar 3 like 2 6
MIRT509530 INTU inturned planar cell polarity protein 2 6
MIRT509548 BTLA B and T lymphocyte associated 2 8
MIRT511328 KIAA1522 KIAA1522 2 4
MIRT511427 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 4
MIRT511477 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 4
MIRT512471 CCDC149 coiled-coil domain containing 149 2 2
MIRT512996 SEZ6L seizure related 6 homolog like 2 2
MIRT514755 ACER3 alkaline ceramidase 3 2 8
MIRT515764 KRTAP5-6 keratin associated protein 5-6 2 2
MIRT517392 TBK1 TANK binding kinase 1 2 4
MIRT518720 FTH1 ferritin heavy chain 1 2 2
MIRT521923 PHIP pleckstrin homology domain interacting protein 2 4
MIRT522849 KIAA2022 neurite extension and migration factor 2 4
MIRT522887 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT523153 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT525149 ZNF256 zinc finger protein 256 2 2
MIRT525941 C11orf74 chromosome 11 open reading frame 74 2 2
MIRT526876 ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit 2 2
MIRT527366 KRTAP13-2 keratin associated protein 13-2 2 2
MIRT527549 DLGAP5 DLG associated protein 5 2 4
MIRT527604 ANKRD42 ankyrin repeat domain 42 2 2
MIRT527803 KLRD1 killer cell lectin like receptor D1 2 2
MIRT528046 PRKD3 protein kinase D3 2 2
MIRT528397 PGK1 phosphoglycerate kinase 1 2 2
MIRT529673 SLC28A1 solute carrier family 28 member 1 2 2
MIRT530358 HPSE heparanase 2 2
MIRT530908 KIAA1161 myogenesis regulating glycosidase (putative) 2 2
MIRT531169 ZNF333 zinc finger protein 333 2 2
MIRT531438 PAK1 p21 (RAC1) activated kinase 1 2 2
MIRT531562 CENPC1P1 centromere protein C pseudogene 1 1 1
MIRT532783 LDHD lactate dehydrogenase D 2 2
MIRT532848 ZNF699 zinc finger protein 699 2 2
MIRT534287 SLC12A7 solute carrier family 12 member 7 2 2
MIRT535078 PPIG peptidylprolyl isomerase G 2 4
MIRT535968 MFAP3L microfibril associated protein 3 like 2 2
MIRT536163 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT537417 FBXO47 F-box protein 47 2 2
MIRT538665 CCSAP centriole, cilia and spindle associated protein 2 2
MIRT540291 RGR retinal G protein coupled receptor 2 4
MIRT543332 KIAA1456 KIAA1456 2 2
MIRT543392 CC2D2A coiled-coil and C2 domain containing 2A 2 2
MIRT543891 AIMP1 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 2 2
MIRT545609 SIGLEC9 sialic acid binding Ig like lectin 9 2 2
MIRT545839 ZNF275 zinc finger protein 275 2 2
MIRT546689 RORA RAR related orphan receptor A 2 4
MIRT547513 MAT2A methionine adenosyltransferase 2A 2 4
MIRT549431 ACVR1 activin A receptor type 1 2 2
MIRT550567 MYC MYC proto-oncogene, bHLH transcription factor 2 4
MIRT552517 ZIC5 Zic family member 5 2 2
MIRT552743 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT552942 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 2 2
MIRT555752 PDCD10 programmed cell death 10 2 2
MIRT558002 FAM160B1 family with sequence similarity 160 member B1 2 2
MIRT559422 ASF1B anti-silencing function 1B histone chaperone 2 2
MIRT560276 SF1 splicing factor 1 2 2
MIRT560713 ZNF324B zinc finger protein 324B 2 2
MIRT561190 TNFRSF10A TNF receptor superfamily member 10a 2 2
MIRT561817 NUP50 nucleoporin 50 2 2
MIRT562018 LCLAT1 lysocardiolipin acyltransferase 1 2 2
MIRT562847 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT563252 SETD6 SET domain containing 6 2 2
MIRT563978 GCC2 GRIP and coiled-coil domain containing 2 2 2
MIRT564383 BAAT bile acid-CoA:amino acid N-acyltransferase 2 2
MIRT566552 PANK3 pantothenate kinase 3 2 2
MIRT566933 LIN28B lin-28 homolog B 2 2
MIRT566989 LBR lamin B receptor 2 2
MIRT567645 EXT1 exostosin glycosyltransferase 1 2 2
MIRT568268 BICD2 BICD cargo adaptor 2 2 2
MIRT571407 MED4 mediator complex subunit 4 2 2
MIRT571784 PPP2CA protein phosphatase 2 catalytic subunit alpha 2 2
MIRT572437 ATM ATM serine/threonine kinase 2 2
MIRT573613 COX6A1P2 cytochrome c oxidase subunit 6A1 pseudogene 2 2 2
MIRT574289 COX6A1 cytochrome c oxidase subunit 6A1 2 2
MIRT574375 YY1 YY1 transcription factor 2 2
MIRT613142 DSEL dermatan sulfate epimerase-like 2 2
MIRT616661 ORAI1 ORAI calcium release-activated calcium modulator 1 2 2
MIRT619345 SASH1 SAM and SH3 domain containing 1 2 2
MIRT626315 ABCC9 ATP binding cassette subfamily C member 9 2 2
MIRT628235 FAM117B family with sequence similarity 117 member B 2 2
MIRT630452 GTPBP8 GTP binding protein 8 (putative) 2 2
MIRT631013 TMEM30B transmembrane protein 30B 2 2
MIRT637315 FBXO18 F-box protein, helicase, 18 2 2
MIRT640658 FRY FRY microtubule binding protein 2 2
MIRT642081 FUT11 fucosyltransferase 11 2 2
MIRT644607 C17orf77 chromosome 17 open reading frame 77 2 2
MIRT644829 DNAJC21 DnaJ heat shock protein family (Hsp40) member C21 2 2
MIRT652465 TMEM2 transmembrane protein 2 2 2
MIRT657514 HAS2 hyaluronan synthase 2 2 2
MIRT658290 FAM86C1 family with sequence similarity 86 member C1 2 2
MIRT659570 CGGBP1 CGG triplet repeat binding protein 1 2 2
MIRT675457 SRP19 signal recognition particle 19 2 2
MIRT687828 ITGB8 integrin subunit beta 8 2 2
MIRT693550 MYO16 myosin XVI 2 2
MIRT697294 ZNF654 zinc finger protein 654 2 2
MIRT699804 SEC24A SEC24 homolog A, COPII coat complex component 2 2
MIRT704867 CD164 CD164 molecule 2 2
MIRT705309 AVL9 AVL9 cell migration associated 2 2
MIRT705323 ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 2 2
MIRT707180 HOXC4 homeobox C4 2 2
MIRT709331 CLEC12B C-type lectin domain family 12 member B 2 2
MIRT712321 PER2 period circadian clock 2 2 2
MIRT713817 XRCC2 X-ray repair cross complementing 2 2 2
MIRT713854 HHLA2 HERV-H LTR-associating 2 2 2
MIRT717257 SLC44A1 solute carrier family 44 member 1 2 2
MIRT719956 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT725408 KIF6 kinesin family member 6 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3133 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3133 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-mir-3133 Androstenedione+Anastrozole sensitive cell line (MCF-7)
hsa-mir-3133 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3133 Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3133 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3133 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3133 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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