pre-miRNA Information
pre-miRNA hsa-mir-2355   
Genomic Coordinates chr2: 207109987 - 207110073
Description Homo sapiens miR-2355 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-2355-5p
Sequence 11| AUCCCCAGAUACAAUGGACAA |31
Evidence Experimental
Experiments SOLiD
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 1 2 - 207110063 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1268296297 4 dbSNP
rs1361046879 5 dbSNP
rs1219551997 6 dbSNP
rs1295756820 12 dbSNP
rs1345273529 15 dbSNP
rs977145706 15 dbSNP
rs1209629984 20 dbSNP
rs759940260 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF791   
Synonyms -
Description zinc finger protein 791
Transcript NM_153358   
Expression
Putative miRNA Targets on ZNF791
3'UTR of ZNF791
(miRNA target sites are highlighted)
>ZNF791|NM_153358|3'UTR
   1 AAACTCTATAAATGTGAGAAATAGGAGAAAGTTTTCAATTCTAACAGATGCTTTCAAAGTTGTGAAAATTCCCACTGAAG
  81 AGAGAAATCCTGTCAATGTAAGTAATATAGAAAGCGAGATACAAGATGATTCATGTATAGTCAGGTACCACATAATCATG
 161 TTTCAGTCAGCAATGGACCATATAGGTTGGTAGCCCCATAAGATTATATAACACCTAAAACATTTCTATCAACCGCAATT
 241 TAGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTGGTGTAAACGTGCTGCACTTTCAGTT
 321 GTATAAAAGTACAAGACAGCGGCCGGGGACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGA
 401 TCACGAGGCCAGGAGATCAAGACCATCCTGGCTAACACGGTAAAACCCCATCTCTACTAAAAATACAAACAATTAGCCGG
 481 GCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATAAACCCAGGAGGCCGAGCTG
 561 ACAGTGAGCTGAGATCCGGCCAACAGAGCGAGACTCTGTCTC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aaCAGGUAACAUAGACCCCUa 5'
            ||||    || || |||| 
Target 5' taGTCCCAGCTA-CTTGGGAg 3'
500 - 519 118.00 -10.90
2
miRNA  3' aaCAGGUAACAUAGACCCCua 5'
            ||::|| ||: |||| |  
Target 5' gtGTTTATGGTG-CTGGTGta 3'
281 - 300 110.00 -11.40
3
miRNA  3' aacagguaacauaGACCCCUa 5'
                       | ||||| 
Target 5' tacaagacagcggCCGGGGAc 3'
330 - 350 108.00 -8.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30144940 18 COSMIC
COSN30166989 19 COSMIC
COSN1082182 37 COSMIC
COSN18742139 41 COSMIC
COSN30511463 87 COSMIC
COSN30138879 117 COSMIC
COSN7354096 165 COSMIC
COSN1210953 1844 COSMIC
COSN1760555 1973 COSMIC
COSN14659100 2348 COSMIC
COSN32061596 2718 COSMIC
COSN14484169 2996 COSMIC
COSN7354097 3728 COSMIC
COSN9347914 3761 COSMIC
COSN201313 3952 COSMIC
COSN20961674 4164 COSMIC
COSN25199546 4301 COSMIC
COSN27275904 4575 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs756156108 4 dbSNP
rs1463928710 7 dbSNP
rs780305264 7 dbSNP
rs958173074 9 dbSNP
rs761664079 15 dbSNP
rs1272423791 16 dbSNP
rs769477942 17 dbSNP
rs555681299 23 dbSNP
rs1055906732 25 dbSNP
rs1377212856 27 dbSNP
rs985623914 28 dbSNP
rs79706280 30 dbSNP
rs765833261 39 dbSNP
rs753205781 40 dbSNP
rs761028791 43 dbSNP
rs1170988597 45 dbSNP
rs764649116 49 dbSNP
rs1343476641 50 dbSNP
rs1250713893 55 dbSNP
rs1160691279 59 dbSNP
rs1345365299 61 dbSNP
rs1457074739 90 dbSNP
rs1291469992 91 dbSNP
rs535844288 107 dbSNP
rs902844706 109 dbSNP
rs1308433642 112 dbSNP
rs1391493641 113 dbSNP
rs773351443 116 dbSNP
rs918212253 121 dbSNP
rs1464360508 126 dbSNP
rs562038203 137 dbSNP
rs1375370730 142 dbSNP
rs760970152 153 dbSNP
rs1461060777 157 dbSNP
rs1366974183 167 dbSNP
rs1307774185 171 dbSNP
rs1321240119 173 dbSNP
rs1161322623 175 dbSNP
rs570780630 193 dbSNP
rs888377613 201 dbSNP
rs937144206 204 dbSNP
rs557491858 206 dbSNP
rs1055675755 213 dbSNP
rs1253331298 224 dbSNP
rs1212841655 227 dbSNP
rs889052563 229 dbSNP
rs1007378218 235 dbSNP
rs74931289 236 dbSNP
rs963083980 239 dbSNP
rs1237446946 248 dbSNP
rs1468555747 250 dbSNP
rs546095398 253 dbSNP
rs974178075 257 dbSNP
rs1326955206 264 dbSNP
rs753917118 270 dbSNP
rs1388822053 272 dbSNP
rs902490720 273 dbSNP
rs999498589 284 dbSNP
rs1379827044 287 dbSNP
rs1156944678 289 dbSNP
rs1455479691 291 dbSNP
rs1395646722 293 dbSNP
rs951399123 304 dbSNP
rs558302577 306 dbSNP
rs1205422319 312 dbSNP
rs1462256969 318 dbSNP
rs754990999 319 dbSNP
rs1235898284 322 dbSNP
rs1350626077 329 dbSNP
rs1018890727 333 dbSNP
rs928867940 338 dbSNP
rs764075425 341 dbSNP
rs1382932298 342 dbSNP
rs573335217 345 dbSNP
rs1296374676 347 dbSNP
rs540558912 349 dbSNP
rs562035232 350 dbSNP
rs144729286 351 dbSNP
rs1280715968 352 dbSNP
rs543759354 355 dbSNP
rs1260626111 356 dbSNP
rs902961762 357 dbSNP
rs1212382134 358 dbSNP
rs562454943 359 dbSNP
rs1295276009 360 dbSNP
rs932975160 361 dbSNP
rs533014112 362 dbSNP
rs1051449034 366 dbSNP
rs1343511470 369 dbSNP
rs888998518 375 dbSNP
rs1228649972 381 dbSNP
rs551310808 389 dbSNP
rs368854942 390 dbSNP
rs193038234 394 dbSNP
rs549342352 395 dbSNP
rs879803243 398 dbSNP
rs951564621 399 dbSNP
rs3179169 401 dbSNP
rs981368804 403 dbSNP
rs567518870 404 dbSNP
rs958730819 405 dbSNP
rs553137590 406 dbSNP
rs1169573878 408 dbSNP
rs565467657 410 dbSNP
rs1412056799 416 dbSNP
rs1330070590 417 dbSNP
rs947568276 420 dbSNP
rs1275748872 421 dbSNP
rs894051789 424 dbSNP
rs748866698 425 dbSNP
rs569273423 427 dbSNP
rs539950111 428 dbSNP
rs1007061117 431 dbSNP
rs1283636087 433 dbSNP
rs1051395278 434 dbSNP
rs888777313 439 dbSNP
rs557955608 440 dbSNP
rs1337187985 442 dbSNP
rs1166849050 443 dbSNP
rs943056260 443 dbSNP
rs1461580324 447 dbSNP
rs1412657295 448 dbSNP
rs998376198 450 dbSNP
rs573424414 451 dbSNP
rs951133414 453 dbSNP
rs1457585061 455 dbSNP
rs1258971874 459 dbSNP
rs1215943912 464 dbSNP
rs983780816 467 dbSNP
rs899090353 468 dbSNP
rs12327598 471 dbSNP
rs1280052459 472 dbSNP
rs1445883891 474 dbSNP
rs555686700 475 dbSNP
rs1327625565 477 dbSNP
rs1348917696 479 dbSNP
rs887165470 479 dbSNP
rs1002902760 480 dbSNP
rs917188920 481 dbSNP
rs949913202 483 dbSNP
rs1035774385 484 dbSNP
rs958678528 487 dbSNP
rs924016830 489 dbSNP
rs1195872701 490 dbSNP
rs935449632 491 dbSNP
rs1246345940 492 dbSNP
rs1053805950 493 dbSNP
rs1168883340 495 dbSNP
rs1285409515 496 dbSNP
rs893766677 497 dbSNP
rs573983382 502 dbSNP
rs1012897335 503 dbSNP
rs1272700208 509 dbSNP
rs1432381129 510 dbSNP
rs1345419889 513 dbSNP
rs1021850626 514 dbSNP
rs1296995185 515 dbSNP
rs12327599 522 dbSNP
rs1417379510 528 dbSNP
rs969397343 530 dbSNP
rs543838165 538 dbSNP
rs562481011 540 dbSNP
rs924783935 542 dbSNP
rs998743142 545 dbSNP
rs1189845218 548 dbSNP
rs1025846428 555 dbSNP
rs1328455550 556 dbSNP
rs1487371701 558 dbSNP
rs397950573 563 dbSNP
rs61407340 563 dbSNP
rs1210796867 564 dbSNP
rs1311543333 572 dbSNP
rs552648671 578 dbSNP
rs1366698591 579 dbSNP
rs545100987 584 dbSNP
rs1277226989 586 dbSNP
rs1282463675 587 dbSNP
rs1347904234 588 dbSNP
rs559948123 590 dbSNP
rs1281643950 591 dbSNP
rs1448390788 594 dbSNP
rs1005267621 597 dbSNP
rs1174341774 597 dbSNP
rs1246456462 598 dbSNP
rs1412044073 599 dbSNP
rs1016712687 603 dbSNP
rs1193298465 603 dbSNP
rs1206323215 603 dbSNP
rs1216353275 603 dbSNP
rs1254197294 603 dbSNP
rs1424564158 603 dbSNP
rs1482861913 603 dbSNP
rs917137699 603 dbSNP
rs958333100 603 dbSNP
rs991201681 603 dbSNP
rs1453035699 604 dbSNP
rs1196036672 610 dbSNP
rs1396225071 619 dbSNP
rs1419129345 624 dbSNP
rs1431701090 625 dbSNP
rs918784254 626 dbSNP
rs971945654 628 dbSNP
rs954892436 630 dbSNP
rs987217882 631 dbSNP
rs1393443383 633 dbSNP
rs1438464538 640 dbSNP
rs1305453412 642 dbSNP
rs1464204761 643 dbSNP
rs1420332602 645 dbSNP
rs910328163 647 dbSNP
rs943004093 648 dbSNP
rs1253994061 659 dbSNP
rs1037790318 664 dbSNP
rs1178939482 682 dbSNP
rs977647609 684 dbSNP
rs116279746 688 dbSNP
rs1196565987 704 dbSNP
rs935837805 706 dbSNP
rs929222536 709 dbSNP
rs1265717276 713 dbSNP
rs1047673378 720 dbSNP
rs989498311 722 dbSNP
rs1311186492 723 dbSNP
rs1242871088 741 dbSNP
rs1378299541 743 dbSNP
rs1331050963 746 dbSNP
rs1445054541 747 dbSNP
rs906354244 748 dbSNP
rs1393115695 761 dbSNP
rs142775050 767 dbSNP
rs1205348717 769 dbSNP
rs1294409350 772 dbSNP
rs1457460434 774 dbSNP
rs151122404 775 dbSNP
rs942681657 778 dbSNP
rs1379642695 780 dbSNP
rs1176525505 786 dbSNP
rs1469684304 796 dbSNP
rs371358523 798 dbSNP
rs1267604026 800 dbSNP
rs1057129154 801 dbSNP
rs901419209 807 dbSNP
rs1215977983 809 dbSNP
rs1216744030 815 dbSNP
rs934226672 826 dbSNP
rs894578734 836 dbSNP
rs1309232807 848 dbSNP
rs1238427448 852 dbSNP
rs1333251417 858 dbSNP
rs1302428634 861 dbSNP
rs1386363163 865 dbSNP
rs1012847513 867 dbSNP
rs1300065041 870 dbSNP
rs1022047068 875 dbSNP
rs1156846268 882 dbSNP
rs1180339787 882 dbSNP
rs968963907 890 dbSNP
rs1365603282 895 dbSNP
rs1471701970 895 dbSNP
rs1158219305 896 dbSNP
rs1215015061 896 dbSNP
rs1347760273 896 dbSNP
rs761895024 896 dbSNP
rs878925660 896 dbSNP
rs1470587884 900 dbSNP
rs1256916826 914 dbSNP
rs369596842 915 dbSNP
rs1392563980 917 dbSNP
rs999507459 928 dbSNP
rs981738240 929 dbSNP
rs1329544309 930 dbSNP
rs1327690013 938 dbSNP
rs769259347 941 dbSNP
rs1340010654 943 dbSNP
rs1016681771 946 dbSNP
rs954842204 949 dbSNP
rs1402855886 952 dbSNP
rs185597804 956 dbSNP
rs1464398849 959 dbSNP
rs927499468 969 dbSNP
rs1024004933 972 dbSNP
rs910278907 975 dbSNP
rs964458382 985 dbSNP
rs1260323701 991 dbSNP
rs973056823 991 dbSNP
rs1189484189 996 dbSNP
rs748670691 1012 dbSNP
rs1336999764 1013 dbSNP
rs142605723 1015 dbSNP
rs1200212040 1034 dbSNP
rs144833791 1044 dbSNP
rs957171800 1045 dbSNP
rs1219413717 1050 dbSNP
rs929027063 1054 dbSNP
rs989970188 1055 dbSNP
rs1048087976 1057 dbSNP
rs1234802951 1059 dbSNP
rs1450324151 1066 dbSNP
rs927914132 1072 dbSNP
rs1333472785 1076 dbSNP
rs1394062565 1077 dbSNP
rs939158321 1078 dbSNP
rs1054903547 1083 dbSNP
rs1464743384 1085 dbSNP
rs975910983 1095 dbSNP
rs922589875 1111 dbSNP
rs1472866301 1114 dbSNP
rs147942325 1121 dbSNP
rs894526205 1122 dbSNP
rs1460380790 1123 dbSNP
rs539410868 1127 dbSNP
rs948814899 1133 dbSNP
rs937669550 1151 dbSNP
rs1043181536 1155 dbSNP
rs1253305686 1161 dbSNP
rs1199691489 1162 dbSNP
rs1438405133 1166 dbSNP
rs934005037 1174 dbSNP
rs551855086 1175 dbSNP
rs190454116 1182 dbSNP
rs887388258 1183 dbSNP
rs941492798 1190 dbSNP
rs773652758 1191 dbSNP
rs200917259 1195 dbSNP
rs1038589709 1196 dbSNP
rs1445841887 1196 dbSNP
rs998892914 1196 dbSNP
rs796738197 1197 dbSNP
rs890726017 1204 dbSNP
rs1165971259 1209 dbSNP
rs894211339 1209 dbSNP
rs760879021 1210 dbSNP
rs1405435235 1214 dbSNP
rs766599180 1219 dbSNP
rs1017792845 1220 dbSNP
rs1418297849 1222 dbSNP
rs1412368295 1224 dbSNP
rs543004605 1231 dbSNP
rs1443276403 1235 dbSNP
rs1382720636 1252 dbSNP
rs1179625697 1253 dbSNP
rs1024475172 1259 dbSNP
rs906842349 1261 dbSNP
rs538762292 1262 dbSNP
rs1452412135 1264 dbSNP
rs377228199 1266 dbSNP
rs555523106 1273 dbSNP
rs1031536011 1277 dbSNP
rs973556566 1286 dbSNP
rs370073943 1298 dbSNP
rs957307148 1300 dbSNP
rs1027429671 1314 dbSNP
rs950420903 1315 dbSNP
rs983150830 1318 dbSNP
rs927863392 1325 dbSNP
rs964905323 1330 dbSNP
rs557245939 1344 dbSNP
rs1320955187 1346 dbSNP
rs2861399 1350 dbSNP
rs546048211 1351 dbSNP
rs990579799 1357 dbSNP
rs4804204 1359 dbSNP
rs1225709862 1361 dbSNP
rs1253560336 1363 dbSNP
rs1340704437 1369 dbSNP
rs141740163 1370 dbSNP
rs1043518643 1372 dbSNP
rs1478451543 1374 dbSNP
rs577572200 1379 dbSNP
rs1197329659 1380 dbSNP
rs1489352672 1381 dbSNP
rs904636836 1384 dbSNP
rs1286637660 1387 dbSNP
rs1215737299 1391 dbSNP
rs754730743 1391 dbSNP
rs1255447017 1392 dbSNP
rs544678307 1394 dbSNP
rs1188904169 1402 dbSNP
rs1262757391 1407 dbSNP
rs908793958 1408 dbSNP
rs370911533 1417 dbSNP
rs757250037 1418 dbSNP
rs1053110164 1428 dbSNP
rs758671523 1428 dbSNP
rs916040418 1444 dbSNP
rs145900138 1446 dbSNP
rs1009143079 1449 dbSNP
rs1045454828 1450 dbSNP
rs118082271 1451 dbSNP
rs900653423 1463 dbSNP
rs995044023 1466 dbSNP
rs138430767 1467 dbSNP
rs1360880987 1473 dbSNP
rs1193075930 1478 dbSNP
rs1011408540 1479 dbSNP
rs1239182990 1482 dbSNP
rs1017493753 1485 dbSNP
rs547676527 1490 dbSNP
rs964549190 1497 dbSNP
rs997789385 1505 dbSNP
rs1029730326 1518 dbSNP
rs1318192786 1519 dbSNP
rs1276967584 1521 dbSNP
rs1380077462 1522 dbSNP
rs1360455625 1524 dbSNP
rs983484736 1525 dbSNP
rs1449200626 1529 dbSNP
rs982775831 1531 dbSNP
rs1335151582 1533 dbSNP
rs1467338371 1537 dbSNP
rs1424630754 1544 dbSNP
rs1170025011 1552 dbSNP
rs1426853467 1557 dbSNP
rs1415866937 1558 dbSNP
rs1182433863 1561 dbSNP
rs1278882160 1566 dbSNP
rs1401459173 1577 dbSNP
rs1240967253 1586 dbSNP
rs35134560 1587 dbSNP
rs192519993 1592 dbSNP
rs962703122 1599 dbSNP
rs1257080412 1604 dbSNP
rs148829095 1606 dbSNP
rs753126954 1611 dbSNP
rs1312829458 1612 dbSNP
rs575069728 1626 dbSNP
rs1382743778 1631 dbSNP
rs1263580398 1637 dbSNP
rs1428962445 1646 dbSNP
rs1449523062 1650 dbSNP
rs1192869626 1653 dbSNP
rs1331007018 1661 dbSNP
rs1046342438 1668 dbSNP
rs928400385 1672 dbSNP
rs1397413790 1673 dbSNP
rs755961434 1691 dbSNP
rs916523967 1693 dbSNP
rs564986385 1698 dbSNP
rs1180245885 1705 dbSNP
rs979304282 1714 dbSNP
rs1011210730 1721 dbSNP
rs1193662932 1729 dbSNP
rs1489263125 1742 dbSNP
rs1265478787 1754 dbSNP
rs1220210204 1756 dbSNP
rs533409951 1766 dbSNP
rs900443300 1772 dbSNP
rs1313602579 1775 dbSNP
rs1378187881 1792 dbSNP
rs926009025 1792 dbSNP
rs1290331170 1794 dbSNP
rs934768716 1799 dbSNP
rs1440642854 1811 dbSNP
rs34220854 1812 dbSNP
rs1373867318 1813 dbSNP
rs886284106 1818 dbSNP
rs1235050602 1823 dbSNP
rs566657154 1827 dbSNP
rs1424142355 1831 dbSNP
rs1306344578 1832 dbSNP
rs911891307 1841 dbSNP
rs527756575 1845 dbSNP
rs1379384240 1847 dbSNP
rs1179441009 1851 dbSNP
rs1434498303 1855 dbSNP
rs1261544594 1859 dbSNP
rs1039289994 1861 dbSNP
rs58854014 1866 dbSNP
rs1489675060 1869 dbSNP
rs1212874416 1872 dbSNP
rs754588201 1873 dbSNP
rs1251013136 1878 dbSNP
rs1219353293 1882 dbSNP
rs1469751271 1887 dbSNP
rs995389899 1894 dbSNP
rs567532905 1903 dbSNP
rs1049230361 1904 dbSNP
rs1194224937 1906 dbSNP
rs886155309 1906 dbSNP
rs1314133818 1909 dbSNP
rs1004581083 1913 dbSNP
rs1404399656 1915 dbSNP
rs1343657486 1918 dbSNP
rs1300123471 1920 dbSNP
rs1416849736 1922 dbSNP
rs1160766092 1929 dbSNP
rs1034771935 1931 dbSNP
rs1364022949 1935 dbSNP
rs1467424443 1936 dbSNP
rs1377835882 1946 dbSNP
rs1174981470 1949 dbSNP
rs1479258761 1951 dbSNP
rs970755539 1961 dbSNP
rs981626921 1972 dbSNP
rs1331688021 1973 dbSNP
rs1488875033 1991 dbSNP
rs148062439 2004 dbSNP
rs1261691620 2010 dbSNP
rs1203750401 2014 dbSNP
rs928762139 2015 dbSNP
rs1256968507 2024 dbSNP
rs960346813 2035 dbSNP
rs1223067661 2047 dbSNP
rs62108382 2052 dbSNP
rs1011899157 2064 dbSNP
rs934848468 2065 dbSNP
rs1280124810 2067 dbSNP
rs1023480505 2073 dbSNP
rs1219383317 2079 dbSNP
rs778584627 2087 dbSNP
rs968012175 2088 dbSNP
rs1397545519 2094 dbSNP
rs1402569005 2096 dbSNP
rs747567915 2112 dbSNP
rs1335844791 2113 dbSNP
rs1467865210 2119 dbSNP
rs914350718 2125 dbSNP
rs979640120 2129 dbSNP
rs923788268 2133 dbSNP
rs956784822 2134 dbSNP
rs1039147943 2140 dbSNP
rs988873751 2143 dbSNP
rs1442279574 2154 dbSNP
rs772634945 2159 dbSNP
rs1298164827 2161 dbSNP
rs944661050 2174 dbSNP
rs1039071787 2176 dbSNP
rs922137835 2177 dbSNP
rs1444642036 2178 dbSNP
rs930919875 2179 dbSNP
rs1203462140 2182 dbSNP
rs769285946 2194 dbSNP
rs1260278016 2198 dbSNP
rs1334473550 2207 dbSNP
rs1199340395 2208 dbSNP
rs1338885064 2215 dbSNP
rs1231745395 2220 dbSNP
rs556864999 2225 dbSNP
rs571840218 2226 dbSNP
rs1005031432 2242 dbSNP
rs1314046944 2248 dbSNP
rs538664081 2252 dbSNP
rs183759298 2254 dbSNP
rs78600620 2261 dbSNP
rs1402019197 2266 dbSNP
rs1331693050 2269 dbSNP
rs1232246956 2270 dbSNP
rs188812488 2271 dbSNP
rs1393610506 2282 dbSNP
rs747462732 2284 dbSNP
rs142615196 2290 dbSNP
rs28634355 2291 dbSNP
rs1000786455 2292 dbSNP
rs995518682 2296 dbSNP
rs567805741 2299 dbSNP
rs1240243687 2302 dbSNP
rs769964462 2303 dbSNP
rs956551294 2304 dbSNP
rs375710571 2309 dbSNP
rs986645057 2317 dbSNP
rs1270917888 2320 dbSNP
rs1211734692 2327 dbSNP
rs970092634 2332 dbSNP
rs757568275 2333 dbSNP
rs533426809 2334 dbSNP
rs966118695 2337 dbSNP
rs775644074 2340 dbSNP
rs1378763772 2341 dbSNP
rs974706113 2343 dbSNP
rs1309721472 2348 dbSNP
rs1353298623 2350 dbSNP
rs1035958934 2358 dbSNP
rs1324934182 2359 dbSNP
rs1405490103 2363 dbSNP
rs921949252 2366 dbSNP
rs138715288 2372 dbSNP
rs201516019 2376 dbSNP
rs1382481975 2377 dbSNP
rs1178168193 2380 dbSNP
rs1469773775 2383 dbSNP
rs985041984 2385 dbSNP
rs1413168358 2397 dbSNP
rs370117676 2398 dbSNP
rs974525181 2399 dbSNP
rs1220078234 2403 dbSNP
rs921553710 2408 dbSNP
rs1286408341 2415 dbSNP
rs1336608003 2415 dbSNP
rs1348066424 2416 dbSNP
rs940836540 2421 dbSNP
rs1276320549 2425 dbSNP
rs1436550713 2426 dbSNP
rs933022544 2431 dbSNP
rs1228680315 2436 dbSNP
rs1403592196 2437 dbSNP
rs1363026952 2447 dbSNP
rs1160259433 2469 dbSNP
rs746878062 2469 dbSNP
rs148806722 2479 dbSNP
rs1305718600 2491 dbSNP
rs1056578562 2494 dbSNP
rs869087317 2494 dbSNP
rs1037579151 2495 dbSNP
rs896203507 2495 dbSNP
rs898574992 2496 dbSNP
rs1185271235 2499 dbSNP
rs947797157 2512 dbSNP
rs1214804772 2516 dbSNP
rs1045255250 2519 dbSNP
rs1259183679 2535 dbSNP
rs995963546 2538 dbSNP
rs903497569 2539 dbSNP
rs1280484995 2541 dbSNP
rs1223671935 2548 dbSNP
rs1322433568 2553 dbSNP
rs1473306354 2566 dbSNP
rs1186315987 2570 dbSNP
rs565224016 2573 dbSNP
rs1417871666 2574 dbSNP
rs1412098002 2581 dbSNP
rs1169859844 2582 dbSNP
rs1000966271 2590 dbSNP
rs181186596 2593 dbSNP
rs532288658 2595 dbSNP
rs1336593251 2596 dbSNP
rs1470398411 2599 dbSNP
rs905831022 2609 dbSNP
rs1008023990 2610 dbSNP
rs1002904100 2618 dbSNP
rs1374916002 2622 dbSNP
rs1035884314 2631 dbSNP
rs1432959632 2634 dbSNP
rs1420129429 2636 dbSNP
rs1019466387 2637 dbSNP
rs963909041 2643 dbSNP
rs1185796421 2644 dbSNP
rs200967378 2647 dbSNP
rs1356375575 2653 dbSNP
rs1010351795 2657 dbSNP
rs1204083197 2660 dbSNP
rs1021712450 2670 dbSNP
rs1260910028 2673 dbSNP
rs1269357145 2674 dbSNP
rs545411354 2676 dbSNP
rs1029514984 2677 dbSNP
rs968914905 2678 dbSNP
rs1360520443 2681 dbSNP
rs974872163 2688 dbSNP
rs1453892185 2699 dbSNP
rs921718323 2702 dbSNP
rs111560670 2706 dbSNP
rs1415934150 2706 dbSNP
rs1426612468 2706 dbSNP
rs954515975 2706 dbSNP
rs1208140042 2715 dbSNP
rs1443849140 2717 dbSNP
rs1240871229 2718 dbSNP
rs1281957244 2718 dbSNP
rs1480772285 2719 dbSNP
rs560133715 2720 dbSNP
rs987179936 2722 dbSNP
rs907792980 2724 dbSNP
rs940623588 2725 dbSNP
rs1247152225 2735 dbSNP
rs1037631380 2736 dbSNP
rs1382414044 2736 dbSNP
rs767550669 2738 dbSNP
rs386806925 2739 dbSNP
rs952066325 2740 dbSNP
rs947931240 2741 dbSNP
rs527642677 2755 dbSNP
rs985211259 2756 dbSNP
rs1003282041 2757 dbSNP
rs908097550 2759 dbSNP
rs891803839 2760 dbSNP
rs1160257257 2770 dbSNP
rs58945432 2771 dbSNP
rs1249428890 2773 dbSNP
rs1010402783 2778 dbSNP
rs536582762 2779 dbSNP
rs750325093 2787 dbSNP
rs992254424 2788 dbSNP
rs1316585053 2794 dbSNP
rs918080460 2795 dbSNP
rs567421070 2799 dbSNP
rs1317714310 2800 dbSNP
rs1044804591 2802 dbSNP
rs1298192357 2803 dbSNP
rs996390216 2818 dbSNP
rs1029143642 2827 dbSNP
rs531974705 2828 dbSNP
rs1404207115 2833 dbSNP
rs936325977 2840 dbSNP
rs550094039 2841 dbSNP
rs1454177852 2844 dbSNP
rs571937890 2846 dbSNP
rs112725439 2848 dbSNP
rs1434543592 2848 dbSNP
rs1304946310 2850 dbSNP
rs7257714 2851 dbSNP
rs1222841899 2855 dbSNP
rs561940607 2858 dbSNP
rs920551470 2863 dbSNP
rs1237071610 2868 dbSNP
rs534233746 2868 dbSNP
rs899650723 2868 dbSNP
rs769666999 2877 dbSNP
rs375206638 2892 dbSNP
rs997113404 2893 dbSNP
rs554652858 2894 dbSNP
rs565689718 2895 dbSNP
rs1320272997 2897 dbSNP
rs1057146654 2899 dbSNP
rs185597398 2904 dbSNP
rs554751792 2905 dbSNP
rs1469704009 2909 dbSNP
rs1406428789 2921 dbSNP
rs1479210226 2922 dbSNP
rs891772448 2924 dbSNP
rs58663011 2926 dbSNP
rs1261410675 2931 dbSNP
rs1458571413 2932 dbSNP
rs1462798056 2935 dbSNP
rs946061348 2942 dbSNP
rs1203095591 2943 dbSNP
rs558443747 2946 dbSNP
rs529249769 2947 dbSNP
rs1438615074 2948 dbSNP
rs918194989 2950 dbSNP
rs996747807 2951 dbSNP
rs1237713764 2954 dbSNP
rs969497382 2958 dbSNP
rs1454415761 2960 dbSNP
rs757830528 2962 dbSNP
rs1029198929 2964 dbSNP
rs1467918227 2969 dbSNP
rs1397928097 2970 dbSNP
rs1168024554 2977 dbSNP
rs540980900 2981 dbSNP
rs1228684106 2983 dbSNP
rs1008612949 2984 dbSNP
rs925017252 2993 dbSNP
rs559179098 2994 dbSNP
rs1052224554 2995 dbSNP
rs1216083021 2996 dbSNP
rs527679101 2999 dbSNP
rs1268673589 3000 dbSNP
rs190055343 3009 dbSNP
rs1249615619 3010 dbSNP
rs1027982288 3012 dbSNP
rs913568900 3012 dbSNP
rs961676615 3012 dbSNP
rs1449964263 3023 dbSNP
rs1337211152 3028 dbSNP
rs943710502 3031 dbSNP
rs1328912282 3032 dbSNP
rs1390382624 3038 dbSNP
rs969365970 3039 dbSNP
rs1167194446 3048 dbSNP
rs1427114172 3051 dbSNP
rs561081238 3052 dbSNP
rs1163363839 3061 dbSNP
rs1040969382 3062 dbSNP
rs1471922507 3065 dbSNP
rs1234857969 3066 dbSNP
rs1437273095 3094 dbSNP
rs899763764 3094 dbSNP
rs1249732656 3096 dbSNP
rs981102819 3098 dbSNP
rs996670959 3101 dbSNP
rs1290699479 3104 dbSNP
rs939204414 3113 dbSNP
rs1352387103 3114 dbSNP
rs1048708359 3121 dbSNP
rs1237891740 3124 dbSNP
rs772719399 3126 dbSNP
rs1179774856 3127 dbSNP
rs1333406778 3132 dbSNP
rs1234722447 3138 dbSNP
rs1473022246 3141 dbSNP
rs1164561133 3153 dbSNP
rs1366784114 3162 dbSNP
rs768917232 3162 dbSNP
rs139292403 3164 dbSNP
rs1404021617 3165 dbSNP
rs946035123 3165 dbSNP
rs1159307192 3167 dbSNP
rs1006711834 3173 dbSNP
rs1469823358 3186 dbSNP
rs1409800347 3187 dbSNP
rs181608165 3188 dbSNP
rs111272236 3208 dbSNP
rs932219142 3215 dbSNP
rs1051123494 3224 dbSNP
rs890605743 3228 dbSNP
rs532698766 3237 dbSNP
rs1391405752 3246 dbSNP
rs1348120118 3248 dbSNP
rs1025156359 3249 dbSNP
rs1009084246 3256 dbSNP
rs1346698155 3257 dbSNP
rs1283275623 3267 dbSNP
rs1014662885 3296 dbSNP
rs1347251584 3308 dbSNP
rs1319429295 3309 dbSNP
rs1400291963 3312 dbSNP
rs1390266091 3317 dbSNP
rs548112865 3320 dbSNP
rs970046670 3321 dbSNP
rs980929277 3338 dbSNP
rs1480838012 3343 dbSNP
rs1428698133 3349 dbSNP
rs192249084 3357 dbSNP
rs1189329694 3364 dbSNP
rs925434502 3368 dbSNP
rs372112085 3389 dbSNP
rs1242433288 3392 dbSNP
rs1214862909 3404 dbSNP
rs774245825 3405 dbSNP
rs1264695029 3412 dbSNP
rs1410051178 3413 dbSNP
rs958270085 3414 dbSNP
rs987871972 3425 dbSNP
rs1203741953 3429 dbSNP
rs1292359778 3431 dbSNP
rs913683555 3432 dbSNP
rs969461304 3449 dbSNP
rs536292932 3453 dbSNP
rs1271114950 3454 dbSNP
rs1236381311 3455 dbSNP
rs548191105 3456 dbSNP
rs1035360089 3459 dbSNP
rs1339276705 3464 dbSNP
rs1040753454 3471 dbSNP
rs921145999 3480 dbSNP
rs1405384974 3485 dbSNP
rs932570667 3486 dbSNP
rs563632103 3495 dbSNP
rs1411566503 3497 dbSNP
rs577257112 3501 dbSNP
rs1420184540 3502 dbSNP
rs1275197616 3503 dbSNP
rs1483454073 3505 dbSNP
rs180960144 3509 dbSNP
rs1255678692 3510 dbSNP
rs1447497705 3517 dbSNP
rs1244763447 3518 dbSNP
rs1183752290 3520 dbSNP
rs1474082811 3522 dbSNP
rs913318816 3526 dbSNP
rs747441322 3530 dbSNP
rs1461394025 3536 dbSNP
rs1004077279 3543 dbSNP
rs1309748507 3548 dbSNP
rs1274392922 3549 dbSNP
rs1036373408 3553 dbSNP
rs1340393579 3556 dbSNP
rs536766789 3558 dbSNP
rs1013500784 3559 dbSNP
rs59273572 3562 dbSNP
rs376414680 3563 dbSNP
rs368814703 3565 dbSNP
rs1355029137 3566 dbSNP
rs1169590676 3575 dbSNP
rs1427748292 3580 dbSNP
rs1386819051 3586 dbSNP
rs1164004775 3590 dbSNP
rs1443611081 3591 dbSNP
rs1253692722 3592 dbSNP
rs1373262882 3600 dbSNP
rs1178417572 3601 dbSNP
rs1397465068 3602 dbSNP
rs184983897 3603 dbSNP
rs1205024609 3605 dbSNP
rs1326275729 3607 dbSNP
rs1294369262 3610 dbSNP
rs781559602 3611 dbSNP
rs1300459524 3612 dbSNP
rs746165231 3613 dbSNP
rs1342880606 3618 dbSNP
rs144208952 3619 dbSNP
rs553260968 3621 dbSNP
rs373424854 3622 dbSNP
rs763161803 3625 dbSNP
rs768590101 3632 dbSNP
rs773253587 3635 dbSNP
rs920922562 3636 dbSNP
rs932376157 3637 dbSNP
rs1256591595 3639 dbSNP
rs984429526 3644 dbSNP
rs1366509479 3647 dbSNP
rs760714640 3648 dbSNP
rs766374841 3649 dbSNP
rs1036825807 3650 dbSNP
rs753695187 3654 dbSNP
rs1471876295 3660 dbSNP
rs904826242 3663 dbSNP
rs573074446 3664 dbSNP
rs765001542 3669 dbSNP
rs1218167619 3672 dbSNP
rs376835334 3674 dbSNP
rs1287785899 3675 dbSNP
rs1226697249 3680 dbSNP
rs562225200 3692 dbSNP
rs7246599 3695 dbSNP
rs1380886733 3696 dbSNP
rs530894936 3697 dbSNP
rs1387500685 3702 dbSNP
rs1156307870 3704 dbSNP
rs1366592840 3705 dbSNP
rs1032978142 3708 dbSNP
rs532643391 3709 dbSNP
rs1234266852 3710 dbSNP
rs1265653543 3714 dbSNP
rs1188709219 3717 dbSNP
rs1301303541 3718 dbSNP
rs1267818090 3720 dbSNP
rs1206891118 3728 dbSNP
rs1314087914 3729 dbSNP
rs1232379742 3734 dbSNP
rs1234222158 3735 dbSNP
rs1329321857 3735 dbSNP
rs1297411907 3737 dbSNP
rs1260376455 3741 dbSNP
rs1363990385 3751 dbSNP
rs894076906 3752 dbSNP
rs1470756616 3759 dbSNP
rs57604817 3760 dbSNP
rs560123729 3761 dbSNP
rs1465963322 3763 dbSNP
rs1376476153 3765 dbSNP
rs965572198 3767 dbSNP
rs978846317 3768 dbSNP
rs530394136 3771 dbSNP
rs1186866203 3773 dbSNP
rs953392910 3776 dbSNP
rs1243797909 3785 dbSNP
rs761288770 3788 dbSNP
rs1342775754 3791 dbSNP
rs1253064176 3792 dbSNP
rs1228078486 3793 dbSNP
rs1341118477 3798 dbSNP
rs548870755 3802 dbSNP
rs1454208044 3805 dbSNP
rs1383140378 3809 dbSNP
rs1332897163 3811 dbSNP
rs1393858024 3811 dbSNP
rs983821317 3822 dbSNP
rs909749763 3825 dbSNP
rs1170092063 3829 dbSNP
rs1430984621 3830 dbSNP
rs1362898978 3835 dbSNP
rs1389885340 3835 dbSNP
rs569562852 3835 dbSNP
rs564139354 3840 dbSNP
rs1186910470 3842 dbSNP
rs1440711922 3845 dbSNP
rs1452023362 3852 dbSNP
rs939948172 3861 dbSNP
rs537009145 3865 dbSNP
rs917078168 3869 dbSNP
rs112962861 3871 dbSNP
rs919399755 3874 dbSNP
rs1272188658 3875 dbSNP
rs930818638 3880 dbSNP
rs1048788572 3882 dbSNP
rs1359703358 3889 dbSNP
rs1283297712 3893 dbSNP
rs147952373 3903 dbSNP
rs1268311054 3908 dbSNP
rs1336972715 3910 dbSNP
rs1001876381 3915 dbSNP
rs1370527311 3917 dbSNP
rs1410951371 3917 dbSNP
rs534543479 3925 dbSNP
rs905289317 3932 dbSNP
rs1440816391 3934 dbSNP
rs1391916501 3937 dbSNP
rs762478302 3942 dbSNP
rs937987552 3945 dbSNP
rs1053795441 3948 dbSNP
rs757766005 3949 dbSNP
rs781620595 3951 dbSNP
rs746288009 3952 dbSNP
rs1387432323 3962 dbSNP
rs1042702711 3964 dbSNP
rs770047938 3965 dbSNP
rs552730768 3966 dbSNP
rs202037621 3968 dbSNP
rs967827472 3968 dbSNP
rs998366427 3976 dbSNP
rs1227315777 3980 dbSNP
rs1033080712 3981 dbSNP
rs367737860 3981 dbSNP
rs1269778486 3982 dbSNP
rs1286934462 3983 dbSNP
rs953621197 3985 dbSNP
rs574267179 4014 dbSNP
rs1028464754 4030 dbSNP
rs953821619 4033 dbSNP
rs189597461 4035 dbSNP
rs986240434 4038 dbSNP
rs1456832874 4044 dbSNP
rs1477429710 4045 dbSNP
rs1409867860 4047 dbSNP
rs911855451 4051 dbSNP
rs3087801 4059 dbSNP
rs1016591234 4070 dbSNP
rs1244910695 4074 dbSNP
rs576362545 4077 dbSNP
rs182576831 4078 dbSNP
rs961066891 4079 dbSNP
rs1191293562 4080 dbSNP
rs972279641 4082 dbSNP
rs972606479 4085 dbSNP
rs1264491227 4087 dbSNP
rs1225840548 4093 dbSNP
rs1368983304 4107 dbSNP
rs1274602401 4115 dbSNP
rs1434849305 4117 dbSNP
rs566778417 4121 dbSNP
rs919536963 4125 dbSNP
rs917192826 4135 dbSNP
rs749445551 4161 dbSNP
rs1249270617 4172 dbSNP
rs930807436 4179 dbSNP
rs985400933 4183 dbSNP
rs926387731 4186 dbSNP
rs971175943 4197 dbSNP
rs34009909 4200 dbSNP
rs1056146658 4201 dbSNP
rs34897997 4212 dbSNP
rs979977987 4213 dbSNP
rs1413145369 4215 dbSNP
rs1248411193 4217 dbSNP
rs1187495877 4221 dbSNP
rs547202590 4225 dbSNP
rs1244424884 4245 dbSNP
rs1210260792 4260 dbSNP
rs1313296359 4261 dbSNP
rs1217992633 4262 dbSNP
rs565275916 4263 dbSNP
rs1298841586 4268 dbSNP
rs529513136 4288 dbSNP
rs1054315367 4295 dbSNP
rs1434585863 4307 dbSNP
rs1458909153 4310 dbSNP
rs1338775452 4315 dbSNP
rs915245133 4316 dbSNP
rs186867644 4323 dbSNP
rs1042632206 4330 dbSNP
rs1332029833 4332 dbSNP
rs1289231033 4335 dbSNP
rs1411618164 4344 dbSNP
rs141780579 4348 dbSNP
rs768871349 4349 dbSNP
rs1447255394 4363 dbSNP
rs1049932289 4364 dbSNP
rs1028540242 4378 dbSNP
rs1323413349 4381 dbSNP
rs560009843 4382 dbSNP
rs568413730 4384 dbSNP
rs1017118036 4394 dbSNP
rs1250265999 4397 dbSNP
rs763150497 4406 dbSNP
rs542547964 4414 dbSNP
rs549277950 4420 dbSNP
rs966020081 4420 dbSNP
rs1315037306 4428 dbSNP
rs1183823443 4429 dbSNP
rs1252097713 4443 dbSNP
rs1475063242 4471 dbSNP
rs1378473895 4473 dbSNP
rs972080183 4482 dbSNP
rs1026562716 4493 dbSNP
rs1416459402 4501 dbSNP
rs952434641 4510 dbSNP
rs1427649786 4511 dbSNP
rs1164960843 4513 dbSNP
rs1367224492 4513 dbSNP
rs1410931057 4515 dbSNP
rs1422915462 4515 dbSNP
rs1178483261 4527 dbSNP
rs563957002 4540 dbSNP
rs774322230 4548 dbSNP
rs1424899296 4551 dbSNP
rs1170430976 4552 dbSNP
rs1352774696 4556 dbSNP
rs1431706103 4557 dbSNP
rs1308820665 4559 dbSNP
rs1205086928 4560 dbSNP
rs570523595 4560 dbSNP
rs796283475 4560 dbSNP
rs926746618 4560 dbSNP
rs1310628885 4567 dbSNP
rs1230384021 4569 dbSNP
rs1351021622 4571 dbSNP
rs373703742 4572 dbSNP
rs1293921987 4573 dbSNP
rs191601648 4573 dbSNP
rs991841967 4573 dbSNP
rs796326518 4574 dbSNP
rs1390989991 4575 dbSNP
rs35805590 4575 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aacagguaacauaGACCCCUa 5'
                       ||||||| 
Target 5' -----aacucacaCUGGGGAg 3'
1 - 16
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000446165.1 | 3UTR | aacucacacuggggagaaaccuuaugaauguaag
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
STAD -0.529 0 -0.543 0 32 Click to see details
KICH -0.468 0.01 -0.448 0.01 25 Click to see details
BRCA -0.23 0.02 -0.211 0.03 84 Click to see details
UCEC -0.4 0.04 -0.288 0.12 19 Click to see details
BLCA -0.352 0.08 -0.356 0.07 18 Click to see details
PRAD -0.2 0.08 -0.163 0.13 50 Click to see details
PAAD 0.707 0.15 0.800 0.1 4 Click to see details
KIRC -0.126 0.15 -0.142 0.12 68 Click to see details
CESC -0.857 0.17 -0.500 0.33 3 Click to see details
HNSC -0.135 0.2 -0.285 0.03 42 Click to see details
PCPG 0.81 0.2 0.500 0.33 3 Click to see details
ESCA -0.283 0.2 -0.236 0.24 11 Click to see details
LUSC 0.104 0.27 0.081 0.31 38 Click to see details
LUAD -0.188 0.28 -0.119 0.36 12 Click to see details
KIRP 0.099 0.29 0.011 0.48 32 Click to see details
LIHC -0.067 0.32 -0.119 0.21 49 Click to see details
THCA 0.036 0.39 0.067 0.31 59 Click to see details
CHOL -0.043 0.46 -0.017 0.48 9 Click to see details
CHOL -0.043 0.46 -0.017 0.48 9 Click to see details
164 hsa-miR-2355-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT190653 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT286477 TAOK1 TAO kinase 1 2 4
MIRT318993 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT345622 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT442513 SYT7 synaptotagmin 7 2 4
MIRT444247 CTNND1 catenin delta 1 2 2
MIRT444780 ECE1 endothelin converting enzyme 1 2 2
MIRT456525 TMEM63A transmembrane protein 63A 2 2
MIRT468960 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT469834 R3HDM4 R3H domain containing 4 2 2
MIRT470027 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT471167 PHB2 prohibitin 2 2 2
MIRT475819 HDGF heparin binding growth factor 2 4
MIRT479389 CDKN1B cyclin dependent kinase inhibitor 1B 2 6
MIRT481747 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT485220 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT487259 CCNF cyclin F 2 2
MIRT489971 MCC mutated in colorectal cancers 2 4
MIRT491399 C1D C1D nuclear receptor corepressor 2 2
MIRT494959 CCDC144A coiled-coil domain containing 144A 2 4
MIRT494979 PPP5D1 PPP5 tetratricopeptide repeat domain containing 1 2 2
MIRT495225 CHST14 carbohydrate sulfotransferase 14 2 2
MIRT496550 TBX15 T-box 15 2 2
MIRT501612 PISD phosphatidylserine decarboxylase 2 2
MIRT509393 TRIM24 tripartite motif containing 24 2 2
MIRT519616 ZNF788 zinc finger family member 788 2 4
MIRT519738 ZNF394 zinc finger protein 394 2 4
MIRT521230 SAR1A secretion associated Ras related GTPase 1A 2 4
MIRT521801 POM121C POM121 transmembrane nucleoporin C 2 2
MIRT526233 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT526932 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT529189 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT529329 ZNF649 zinc finger protein 649 2 2
MIRT529698 MRPL30 mitochondrial ribosomal protein L30 2 2
MIRT529921 TOP1MT DNA topoisomerase I mitochondrial 2 2
MIRT530032 SMC1A structural maintenance of chromosomes 1A 2 2
MIRT530898 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT531621 TM4SF5 transmembrane 4 L six family member 5 2 4
MIRT533132 XIAP X-linked inhibitor of apoptosis 2 2
MIRT533210 WAPAL WAPL cohesin release factor 2 2
MIRT534058 ST6GALNAC3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 2 2
MIRT535487 PARVB parvin beta 2 2
MIRT536749 HOXD9 homeobox D9 2 2
MIRT551456 CARKD NAD(P)HX dehydratase 2 2
MIRT551858 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT552095 FAM8A1 family with sequence similarity 8 member A1 2 2
MIRT552332 ZNF704 zinc finger protein 704 2 2
MIRT552549 ZFP36L2 ZFP36 ring finger protein like 2 2 2
MIRT561505 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT562702 ZNF415 zinc finger protein 415 2 2
MIRT563052 ZNF138 zinc finger protein 138 2 2
MIRT564592 ZNF791 zinc finger protein 791 2 2
MIRT566422 PIGA phosphatidylinositol glycan anchor biosynthesis class A 2 2
MIRT570176 RCBTB1 RCC1 and BTB domain containing protein 1 2 2
MIRT570866 ZNF525 zinc finger protein 525 2 2
MIRT570875 ZFP1 ZFP1 zinc finger protein 2 2
MIRT571517 ZNF625 zinc finger protein 625 2 2
MIRT572551 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT610894 HINFP histone H4 transcription factor 2 2
MIRT611037 PTGES prostaglandin E synthase 2 2
MIRT611479 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT612419 SP1 Sp1 transcription factor 2 2
MIRT614478 FRMPD3 FERM and PDZ domain containing 3 2 2
MIRT616318 CACNA1A calcium voltage-gated channel subunit alpha1 A 2 2
MIRT616929 ZNF638 zinc finger protein 638 2 2
MIRT618131 GABARAPL3 GABA type A receptor associated protein like 3 pseudogene 2 2
MIRT618452 ZFP30 ZFP30 zinc finger protein 2 4
MIRT620671 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT620713 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT621126 EMC7 ER membrane protein complex subunit 7 2 4
MIRT621443 TOMM22 translocase of outer mitochondrial membrane 22 2 2
MIRT623491 KCTD11 potassium channel tetramerization domain containing 11 2 2
MIRT623783 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT623918 FNBP1L formin binding protein 1 like 2 2
MIRT625723 CXorf38 chromosome X open reading frame 38 2 2
MIRT625778 GCNT1 glucosaminyl (N-acetyl) transferase 1, core 2 2 2
MIRT626940 TTR transthyretin 2 2
MIRT627357 TSC22D2 TSC22 domain family member 2 2 2
MIRT632078 ALDH1A2 aldehyde dehydrogenase 1 family member A2 2 2
MIRT633361 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT639793 MVK mevalonate kinase 2 2
MIRT643761 NAGK N-acetylglucosamine kinase 2 2
MIRT644358 NDUFAF6 NADH:ubiquinone oxidoreductase complex assembly factor 6 2 2
MIRT645558 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT646588 ANKRD36 ankyrin repeat domain 36 2 2
MIRT646631 SLC25A46 solute carrier family 25 member 46 2 2
MIRT648066 HSPA6 heat shock protein family A (Hsp70) member 6 2 2
MIRT648142 SUCLG2 succinate-CoA ligase GDP-forming beta subunit 2 2
MIRT648416 MYOZ3 myozenin 3 2 2
MIRT649218 AMMECR1L AMMECR1 like 2 2
MIRT649772 MRPS27 mitochondrial ribosomal protein S27 2 4
MIRT650510 UFM1 ubiquitin fold modifier 1 2 2
MIRT651007 ZNF740 zinc finger protein 740 2 2
MIRT651524 WNT2B Wnt family member 2B 2 2
MIRT652014 TTYH3 tweety family member 3 2 2
MIRT652513 TMEM109 transmembrane protein 109 2 2
MIRT652686 THUMPD3 THUMP domain containing 3 2 2
MIRT652772 TENM3 teneurin transmembrane protein 3 2 2
MIRT653160 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT653765 SIX5 SIX homeobox 5 2 2
MIRT653792 SIRPA signal regulatory protein alpha 2 2
MIRT655649 OAZ2 ornithine decarboxylase antizyme 2 2 2
MIRT656263 MEX3A mex-3 RNA binding family member A 2 2
MIRT657044 KCNH6 potassium voltage-gated channel subfamily H member 6 2 2
MIRT657375 HMGA1 high mobility group AT-hook 1 2 2
MIRT657532 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT657542 GSTO2 glutathione S-transferase omega 2 2 2
MIRT657828 GJD3 gap junction protein delta 3 2 2
MIRT658946 DOK6 docking protein 6 2 2
MIRT660363 BACH2 BTB domain and CNC homolog 2 2 2
MIRT660406 ATXN7L3 ataxin 7 like 3 2 2
MIRT660948 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT661031 AAK1 AP2 associated kinase 1 2 2
MIRT662435 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT668419 FAM217B family with sequence similarity 217 member B 2 2
MIRT669332 BSND barttin CLCNK type accessory beta subunit 2 2
MIRT676105 CLUAP1 clusterin associated protein 1 2 2
MIRT677084 SMIM15 small integral membrane protein 15 2 2
MIRT677127 OGFOD3 2-oxoglutarate and iron dependent oxygenase domain containing 3 2 2
MIRT678001 CPM carboxypeptidase M 2 2
MIRT678531 TMEM78 transmembrane protein 78 2 2
MIRT680000 ZNF860 zinc finger protein 860 2 2
MIRT680098 PXMP4 peroxisomal membrane protein 4 2 2
MIRT686795 SOX12 SRY-box 12 2 2
MIRT698887 SPTBN2 spectrin beta, non-erythrocytic 2 2 2
MIRT699371 SLC30A6 solute carrier family 30 member 6 2 2
MIRT702005 MIDN midnolin 2 2
MIRT708101 IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 2 2
MIRT709563 GYG2 glycogenin 2 2 2
MIRT710559 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT710585 CDCA4 cell division cycle associated 4 2 2
MIRT710873 NT5DC1 5'-nucleotidase domain containing 1 2 2
MIRT711876 VASP vasodilator stimulated phosphoprotein 2 2
MIRT712226 RIMS3 regulating synaptic membrane exocytosis 3 2 2
MIRT713211 FAM13A family with sequence similarity 13 member A 2 2
MIRT713261 GPR55 G protein-coupled receptor 55 2 2
MIRT713327 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT713889 RNF19B ring finger protein 19B 2 2
MIRT714015 UBAP2L ubiquitin associated protein 2 like 2 2
MIRT714202 NLRP12 NLR family pyrin domain containing 12 2 2
MIRT714717 VPS8 VPS8, CORVET complex subunit 2 2
MIRT714748 ZNF385D zinc finger protein 385D 2 2
MIRT714806 ARHGEF19 Rho guanine nucleotide exchange factor 19 2 2
MIRT714852 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT715717 MRPL4 mitochondrial ribosomal protein L4 2 2
MIRT715852 GRIN2A glutamate ionotropic receptor NMDA type subunit 2A 2 2
MIRT716853 MFSD12 major facilitator superfamily domain containing 12 2 2
MIRT717134 EBPL emopamil binding protein like 2 2
MIRT717248 TMEM246 transmembrane protein 246 2 2
MIRT717997 ZNF79 zinc finger protein 79 2 2
MIRT718341 PURA purine rich element binding protein A 2 2
MIRT719587 TFCP2L1 transcription factor CP2 like 1 2 2
MIRT720520 PTGR2 prostaglandin reductase 2 2 2
MIRT720671 SLC39A13 solute carrier family 39 member 13 2 2
MIRT721213 DCLK3 doublecortin like kinase 3 2 2
MIRT721757 INF2 inverted formin, FH2 and WH2 domain containing 2 2
MIRT721826 POU6F1 POU class 6 homeobox 1 2 2
MIRT722091 SUSD1 sushi domain containing 1 2 2
MIRT722275 LURAP1 leucine rich adaptor protein 1 2 2
MIRT722802 ARHGAP19 Rho GTPase activating protein 19 2 2
MIRT722866 FAM212B family with sequence similarity 212 member B 2 2
MIRT723113 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT724378 NEK8 NIMA related kinase 8 2 2
MIRT732775 PYCR1 pyrroline-5-carboxylate reductase 1 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-2355 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-2355-5p Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-2355-5p Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-2355-5p Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-2355-5p Gefitinib 123631 NSC715055 approved resistant High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-2355-5p Temozolomide 5394 NSC362856 approved resistant High Glioma tissue
hsa-miR-2355-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-2355-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-2355-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-2355-5p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-2355-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (TOV-112D)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (OVSAHO)

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