pre-miRNA Information
pre-miRNA hsa-mir-3192   
Genomic Coordinates chr20: 18470615 - 18470691
Description Homo sapiens miR-3192 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3192-5p
Sequence 10| UCUGGGAGGUUGUAGCAGUGGAA |32
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs906254403 3 dbSNP
rs554130490 4 dbSNP
rs773140898 6 dbSNP
rs376614009 11 dbSNP
rs899297329 12 dbSNP
rs1330418015 18 dbSNP
rs1402597660 21 dbSNP
rs995052311 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol VAV2   
Synonyms VAV-2
Description vav guanine nucleotide exchange factor 2
Transcript NM_001134398   
Other Transcripts NM_003371   
Expression
Putative miRNA Targets on VAV2
3'UTR of VAV2
(miRNA target sites are highlighted)
>VAV2|NM_001134398|3'UTR
   1 CGGCAGGAACGTGGACAAGACTCGCAGATTTTCTTGGGAGAGTCACTCCAGCCCTGAAGTCTGTCTCTAGCTCCTCTGTG
  81 ACTCAGAGGGGAAATACCAACCTCCCAGTCTTCCACTGCCCACAGGGATAGGGAGGGTGTTGAGAATCCTAAACTCGAAC
 161 CGTTTCACTGTCAGCCTGCCCTCGGCGACCCATCACTGGGTATGCTATTGTACATAGAGGAAACCTGGGCTAGCCCCACC
 241 CAGAGCGCAGAGGAGGGGGCACCGACAGCGCTGCGAGCCAGGCTCTGGGTAGTGGCTGAGGCCAGAGGCCCATCGCCTGC
 321 CCCTGTCCAACTGAGATGGCCTTCAGGAGCCTAGGTTTGAACAGCAGATGCTGTCCCAGGAAGGGCTAGGGACATCGGAG
 401 GGGACCTGCCCCCACACCCTCTGCTCAGCCCCTGGACTCAGCCTTGCCTGTCTTTTCCTGCTGCTCCCAGGGGGAGGTGT
 481 CAGACCTCGGGAGGCAGACGGGACCAGAGCCAGGCTGTTCACTGTGGGCCCACTTGCCCCACTGTGCTAGGGCGCGGGAG
 561 GAGAGAGCACTGTGGTCGCCCTCTGCAGCCACTCTGGCTCCCAAGACTTCCCTGACTCCCCCACTCCCCTCCTTGCCAGG
 641 GGCACACCCGGACCCCACACGGCAGGCCCCTCTCTTGGGAGGGGCCTTTGGAATGATGAAATTCCAACCCTGCTGCCCGG
 721 TCAGCGGTACCGTTTCCTGCCCTCTCTCTGAGAGGCCCTTTCTGGAGTCCTGGGAAGGTGTCTGCCTGGCCGCGCTGCCA
 801 GATCAGTACATCTTTTGTAAAAACCCTGAAATGGGCAGGGAAGAAAACAGGGATTTCCCCTCTCTAGATCCCTGCCAGGT
 881 CCCTCTCCAGGAGGCCCCTCTGCTCTCCTGAAGGGTGGTCCCTGAGGGTCTGCCCAGCCTTGGCACGAGAGGTTGGTTCC
 961 AGCCCCTGGCAGGGCTTCCTTCCAAGGGCCCCTGCAGCCTACAAACTGGGCCTCGGGCGACTCAAAATAAGTGCTCTTGG
1041 GGGTGGCTCTACCCCATTACCTCCCCCAGCCACAACTCCTGGCCTTCGACTTCTGGCTGGGTTAGCCAGACCCTGGTTTC
1121 TCTACCCTGATGTTGCATGAGACCTGGTAACAGTGTCTCCCTCCCAGCTCCTTGCCAAAGCCTCTGTTGAGACCTGGGCT
1201 TCTTGTAGCCCCTTCTCCCTCTGGCCAGCTGCACAGCCTGTGGGAGGTGCCCGGCCCAGGCTGGGTGTGGGGGAAGCTGG
1281 TCCCTGCTGTGGGTGGCGCTGGGGACCTAGGGGCTCCTTCTGAGGTTGGCCTTGTGGCCTCTGGGCTGTATGCCTCTGGG
1361 GTGTAGGGAAGAGGCGGGAGGAGTCATGGGGATGGGGAGCGGCAGGGGGAGAGAGGGGCCCTCGACAAAGGCTTGGGAAA
1441 TGAGGGGAGGTGGAGGCAGGGCAGGGGAAGCGAAGAGTCAGCCTTGGAGAGAGCACCCTGGGGCCTCCGTGTCGGGGTAC
1521 ACCCAGCACTTTGCGACCTGCGGCCCAGCAGGCGCGGAGGATGGCGGGGAGGAAGCCAGCAGCCCCTGTGTTTACTGTCG
1601 TCAGAAAGGTCTTGTGTTTTGGTTTTGGGGTTTTTGTTTTGTTTGTGTTTTGTTTGGCTTGTTTGTTTTTTAAGGGGAAA
1681 AAAGTTTGTAATTATTTCATCCAAATCTCCCGTTATATATCTGTGAATAATAAGAGATTTTATAATAGCAAGAAAATGAT
1761 GTATATTTTAGTTTGTTGACAAATAAGTCATCATGATCACGAAGGACACTGAGAAAAAATAATTTAGAACCCTGGTTTTT
1841 GTGAATTTTTTTGTTTTGTGTTTCTTTGTTTTGAGATTTGTGTTTGGTTTGGTTTTTGCACTGCACTAAGGCAGGAGGGT
1921 TGGAGGGCTGGGTGCAGCCTGGGAGTCCGATGGTTTTCAGCAGGAGACGGGGTGTCCCCTGCAGGGGGCTAAACTGCAGG
2001 GGCCTGAGATTAGCTGTGAACATGTGGGAGCCCGATGCATGTGGGTCAGGGATCTGGGGGCCCCCCCAGCTGGCGGGAAC
2081 CCCAAATGGACACAAACTGTACATTTGCCAATGGGTTTTTTTCAGACCATGGTTTTTACTTGCAAATAAACCTGAGTTCT
2161 TTTCTGCAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aaggugacgAU-GUUGGAGGGUCu 5'
                   || ||||||||||| 
Target 5' gaggggaaaTACCAACCTCCCAGt 3'
86 - 109 162.00 -20.60
2
miRNA  3' aaGGUGACGAUGUUGGAGGGUCu 5'
            |: :| ||:| : ||||||| 
Target 5' gtCTTTTCCTGCTG-CTCCCAGg 3'
450 - 471 152.00 -21.60
3
miRNA  3' aagGUGACGAUGUUGGAGGGUCu 5'
             || ||:  |  |||||||| 
Target 5' taaCAGTGT--CTCCCTCCCAGc 3'
1148 - 1168 152.00 -18.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN25089299 2 COSMIC
COSN30463484 2 COSMIC
COSN27004547 6 COSMIC
COSN30495959 14 COSMIC
COSN27004543 23 COSMIC
COSN30492263 24 COSMIC
COSN30164089 86 COSMIC
COSN30180036 144 COSMIC
COSN31544401 156 COSMIC
COSN31566694 157 COSMIC
COSN9702115 182 COSMIC
COSN26905859 224 COSMIC
COSN31545837 364 COSMIC
COSN26552681 396 COSMIC
COSN31607732 413 COSMIC
COSN28703774 414 COSMIC
COSN31587949 464 COSMIC
COSN26585870 486 COSMIC
COSN31608331 488 COSMIC
COSN25092891 555 COSMIC
COSN9278684 728 COSMIC
COSN9278683 746 COSMIC
COSN20106712 849 COSMIC
COSN31588697 875 COSMIC
COSN1374830 1232 COSMIC
COSN6381576 1493 COSMIC
COSN27020986 1569 COSMIC
COSN27020964 1570 COSMIC
COSN31575984 1613 COSMIC
COSN29645067 1672 COSMIC
COSN31513441 1677 COSMIC
COSN20092034 1693 COSMIC
COSN31593962 1784 COSMIC
COSN20092033 1925 COSMIC
COSN31524555 1968 COSMIC
COSN31518124 2060 COSMIC
COSN24590875 2099 COSMIC
COSN28111631 2131 COSMIC
COSN14549519 2159 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs145903019 1 dbSNP
rs144182765 2 dbSNP
rs376916130 5 dbSNP
rs565399399 7 dbSNP
rs749899069 10 dbSNP
rs560455532 11 dbSNP
rs1454089363 17 dbSNP
rs373904140 23 dbSNP
rs1420992493 24 dbSNP
rs192573366 33 dbSNP
rs1227475606 34 dbSNP
rs952284970 41 dbSNP
rs1028198039 43 dbSNP
rs1314753932 45 dbSNP
rs1314314359 47 dbSNP
rs1383815014 48 dbSNP
rs1398550202 49 dbSNP
rs1325091807 57 dbSNP
rs1371536036 70 dbSNP
rs574379828 74 dbSNP
rs1301169658 75 dbSNP
rs1029315526 86 dbSNP
rs754663111 88 dbSNP
rs750353903 90 dbSNP
rs1468958757 92 dbSNP
rs556208303 101 dbSNP
rs1235260723 109 dbSNP
rs372039875 128 dbSNP
rs577036422 135 dbSNP
rs558738761 148 dbSNP
rs1052393353 154 dbSNP
rs1240582086 156 dbSNP
rs1440793251 157 dbSNP
rs558805178 161 dbSNP
rs539089521 162 dbSNP
rs1164706408 172 dbSNP
rs1394685204 178 dbSNP
rs755071321 183 dbSNP
rs935996085 184 dbSNP
rs138916685 186 dbSNP
rs1391936234 187 dbSNP
rs749906028 189 dbSNP
rs566762620 192 dbSNP
rs554614638 200 dbSNP
rs1248707813 207 dbSNP
rs1334116459 213 dbSNP
rs1247077060 214 dbSNP
rs1043922713 215 dbSNP
rs1334367652 219 dbSNP
rs932104190 225 dbSNP
rs1203186084 231 dbSNP
rs1481145065 233 dbSNP
rs753993077 235 dbSNP
rs1195789085 239 dbSNP
rs1258034020 245 dbSNP
rs766901330 246 dbSNP
rs1040422507 247 dbSNP
rs762409285 255 dbSNP
rs1293978053 256 dbSNP
rs907877424 259 dbSNP
rs869054578 260 dbSNP
rs940171814 260 dbSNP
rs1162309350 262 dbSNP
rs374021101 263 dbSNP
rs1462291148 264 dbSNP
rs568394392 265 dbSNP
rs10993795 269 dbSNP
rs1399586160 270 dbSNP
rs1304254003 271 dbSNP
rs920784367 274 dbSNP
rs1028636346 275 dbSNP
rs974828981 283 dbSNP
rs1355092658 287 dbSNP
rs980651520 289 dbSNP
rs1231727722 297 dbSNP
rs965955957 314 dbSNP
rs187278649 315 dbSNP
rs970193161 318 dbSNP
rs1451245152 321 dbSNP
rs183343558 327 dbSNP
rs769127188 328 dbSNP
rs1485047918 339 dbSNP
rs150111989 340 dbSNP
rs960364800 347 dbSNP
rs1169407403 355 dbSNP
rs560394243 359 dbSNP
rs1422157846 362 dbSNP
rs1031052328 375 dbSNP
rs1467485758 381 dbSNP
rs111532696 389 dbSNP
rs756409674 396 dbSNP
rs896028413 397 dbSNP
rs1300285453 402 dbSNP
rs1362853782 404 dbSNP
rs1382033459 407 dbSNP
rs530438494 409 dbSNP
rs940161684 410 dbSNP
rs1235738129 411 dbSNP
rs910077490 413 dbSNP
rs509590 414 dbSNP
rs1485960259 415 dbSNP
rs1185747813 429 dbSNP
rs996441755 438 dbSNP
rs1455402737 449 dbSNP
rs1194246115 451 dbSNP
rs377559456 453 dbSNP
rs974397313 470 dbSNP
rs77378026 471 dbSNP
rs1161318947 472 dbSNP
rs1346046158 479 dbSNP
rs576970781 488 dbSNP
rs1287315082 490 dbSNP
rs944752439 491 dbSNP
rs886448767 494 dbSNP
rs1442098079 496 dbSNP
rs1048162169 499 dbSNP
rs930926744 500 dbSNP
rs1285696943 502 dbSNP
rs568403343 511 dbSNP
rs955853997 521 dbSNP
rs1372238345 522 dbSNP
rs1305914539 524 dbSNP
rs1258566224 525 dbSNP
rs565012613 526 dbSNP
rs1032783414 527 dbSNP
rs548462686 528 dbSNP
rs999997423 529 dbSNP
rs917385553 538 dbSNP
rs1162884273 539 dbSNP
rs573102613 542 dbSNP
rs192020616 547 dbSNP
rs1418566898 548 dbSNP
rs1157284552 551 dbSNP
rs905911767 553 dbSNP
rs960417576 554 dbSNP
rs536120478 555 dbSNP
rs575515628 556 dbSNP
rs1449702526 561 dbSNP
rs1014251733 562 dbSNP
rs1373499571 567 dbSNP
rs1222700543 569 dbSNP
rs1304434340 578 dbSNP
rs556235669 579 dbSNP
rs1233709184 583 dbSNP
rs746044956 601 dbSNP
rs1272362806 618 dbSNP
rs537891427 622 dbSNP
rs28615167 623 dbSNP
rs1184761428 624 dbSNP
rs1483601165 627 dbSNP
rs1206614871 632 dbSNP
rs978186736 636 dbSNP
rs1480352889 638 dbSNP
rs1175495443 640 dbSNP
rs1420318565 641 dbSNP
rs1004446885 643 dbSNP
rs1164435992 647 dbSNP
rs888716760 649 dbSNP
rs59679106 650 dbSNP
rs1330223836 653 dbSNP
rs932816648 655 dbSNP
rs768368160 657 dbSNP
rs562473142 660 dbSNP
rs566917632 661 dbSNP
rs1292284421 662 dbSNP
rs1359143983 663 dbSNP
rs1039230519 669 dbSNP
rs895208891 671 dbSNP
rs373969403 672 dbSNP
rs1273641690 673 dbSNP
rs1306795872 679 dbSNP
rs1202557918 680 dbSNP
rs1259744811 684 dbSNP
rs1244930391 693 dbSNP
rs944375370 694 dbSNP
rs996046435 697 dbSNP
rs1255661625 698 dbSNP
rs1411385639 702 dbSNP
rs1168805830 704 dbSNP
rs1419467328 711 dbSNP
rs1408754623 712 dbSNP
rs900346285 717 dbSNP
rs988455107 718 dbSNP
rs1018698541 719 dbSNP
rs1008947609 725 dbSNP
rs548787146 726 dbSNP
rs1432662086 729 dbSNP
rs551999476 731 dbSNP
rs73662192 732 dbSNP
rs1163880829 735 dbSNP
rs368915663 740 dbSNP
rs563206441 742 dbSNP
rs1348774273 746 dbSNP
rs187944023 747 dbSNP
rs1278471701 755 dbSNP
rs1014781398 757 dbSNP
rs1194132438 772 dbSNP
rs1241948644 774 dbSNP
rs575966787 782 dbSNP
rs1161692033 791 dbSNP
rs1196132390 792 dbSNP
rs76617338 793 dbSNP
rs948917334 794 dbSNP
rs1197278066 796 dbSNP
rs917437361 801 dbSNP
rs1402121781 804 dbSNP
rs1453798911 810 dbSNP
rs371642430 823 dbSNP
rs564952206 828 dbSNP
rs1209860555 838 dbSNP
rs888663049 839 dbSNP
rs55746764 851 dbSNP
rs1233701835 852 dbSNP
rs1273198246 858 dbSNP
rs997018062 862 dbSNP
rs540363551 863 dbSNP
rs1283824896 864 dbSNP
rs1445645449 870 dbSNP
rs1215884476 871 dbSNP
rs75165332 878 dbSNP
rs574654044 880 dbSNP
rs1282519361 881 dbSNP
rs1021922539 884 dbSNP
rs183449173 894 dbSNP
rs925868113 896 dbSNP
rs189662051 897 dbSNP
rs969901785 899 dbSNP
rs915751412 905 dbSNP
rs1332737686 906 dbSNP
rs1440146032 909 dbSNP
rs557270679 917 dbSNP
rs747560598 920 dbSNP
rs964569293 922 dbSNP
rs1324156110 929 dbSNP
rs35021521 929 dbSNP
rs762395515 934 dbSNP
rs147840120 936 dbSNP
rs1008707071 940 dbSNP
rs1337685035 944 dbSNP
rs576863666 946 dbSNP
rs755799527 947 dbSNP
rs1327283423 953 dbSNP
rs1026848331 956 dbSNP
rs1428903243 960 dbSNP
rs1043077 963 dbSNP
rs899171835 964 dbSNP
rs34468675 967 dbSNP
rs1479219628 968 dbSNP
rs1004214670 971 dbSNP
rs1378677828 972 dbSNP
rs1208635507 996 dbSNP
rs1253280939 999 dbSNP
rs7859728 1010 dbSNP
rs1013194923 1012 dbSNP
rs896094556 1014 dbSNP
rs1057383924 1015 dbSNP
rs1448289136 1016 dbSNP
rs767054178 1018 dbSNP
rs756712989 1019 dbSNP
rs1460726115 1023 dbSNP
rs1465045062 1036 dbSNP
rs1277538860 1047 dbSNP
rs995554610 1051 dbSNP
rs555892237 1052 dbSNP
rs1042534361 1053 dbSNP
rs898486811 1059 dbSNP
rs370882463 1062 dbSNP
rs1348671770 1067 dbSNP
rs946452550 1070 dbSNP
rs566961000 1071 dbSNP
rs752163114 1075 dbSNP
rs1294117742 1078 dbSNP
rs142164127 1079 dbSNP
rs1299876808 1083 dbSNP
rs1253610195 1086 dbSNP
rs185343953 1087 dbSNP
rs1195902942 1088 dbSNP
rs1250494247 1090 dbSNP
rs1358747867 1091 dbSNP
rs1332472041 1100 dbSNP
rs569446004 1103 dbSNP
rs911835461 1110 dbSNP
rs1374757354 1115 dbSNP
rs987339774 1119 dbSNP
rs1462466203 1121 dbSNP
rs934318044 1138 dbSNP
rs904223985 1144 dbSNP
rs950611014 1145 dbSNP
rs1313719515 1147 dbSNP
rs558945445 1151 dbSNP
rs765647751 1153 dbSNP
rs915840822 1155 dbSNP
rs1298131287 1160 dbSNP
rs1327367256 1161 dbSNP
rs963472913 1167 dbSNP
rs1227415147 1172 dbSNP
rs1428379875 1173 dbSNP
rs1273106281 1182 dbSNP
rs1339453798 1188 dbSNP
rs1212337918 1202 dbSNP
rs1280630818 1207 dbSNP
rs1392616550 1217 dbSNP
rs1189913865 1219 dbSNP
rs1449568650 1221 dbSNP
rs1236498077 1226 dbSNP
rs770601386 1228 dbSNP
rs181817251 1229 dbSNP
rs1388169235 1230 dbSNP
rs908622403 1240 dbSNP
rs1012951590 1251 dbSNP
rs1174285536 1252 dbSNP
rs895811999 1253 dbSNP
rs1464768144 1254 dbSNP
rs952673857 1257 dbSNP
rs532128773 1261 dbSNP
rs999076402 1263 dbSNP
rs573421640 1264 dbSNP
rs1043200797 1265 dbSNP
rs771108965 1271 dbSNP
rs964609940 1272 dbSNP
rs946476258 1273 dbSNP
rs1276710734 1274 dbSNP
rs1373770284 1275 dbSNP
rs1303563662 1282 dbSNP
rs915014323 1284 dbSNP
rs1019865824 1286 dbSNP
rs1008808776 1290 dbSNP
rs571225510 1297 dbSNP
rs191110787 1298 dbSNP
rs1194149571 1300 dbSNP
rs1282585151 1304 dbSNP
rs1031369062 1306 dbSNP
rs998583303 1312 dbSNP
rs911553861 1313 dbSNP
rs987359543 1317 dbSNP
rs1457069226 1322 dbSNP
rs777524036 1326 dbSNP
rs1043083350 1327 dbSNP
rs1442350637 1334 dbSNP
rs1325804816 1336 dbSNP
rs948418719 1340 dbSNP
rs919104516 1348 dbSNP
rs973286315 1354 dbSNP
rs963531440 1358 dbSNP
rs1341366079 1359 dbSNP
rs1227589636 1361 dbSNP
rs1307776295 1363 dbSNP
rs1023091020 1364 dbSNP
rs1408440108 1366 dbSNP
rs1372896801 1370 dbSNP
rs561045774 1375 dbSNP
rs960032259 1376 dbSNP
rs1178974846 1377 dbSNP
rs938483236 1383 dbSNP
rs1472412674 1384 dbSNP
rs908399396 1387 dbSNP
rs553493552 1388 dbSNP
rs939906133 1392 dbSNP
rs1164693818 1394 dbSNP
rs931357710 1396 dbSNP
rs1433700721 1397 dbSNP
rs912407028 1398 dbSNP
rs1299344565 1400 dbSNP
rs920029695 1401 dbSNP
rs1237741126 1405 dbSNP
rs1408891260 1407 dbSNP
rs964115652 1409 dbSNP
rs1050859702 1410 dbSNP
rs999525184 1415 dbSNP
rs903411063 1416 dbSNP
rs987098181 1423 dbSNP
rs1022274298 1424 dbSNP
rs1206504592 1427 dbSNP
rs1233577456 1430 dbSNP
rs1482764274 1431 dbSNP
rs1180371047 1432 dbSNP
rs530763023 1433 dbSNP
rs1205800192 1439 dbSNP
rs1475745742 1443 dbSNP
rs563423313 1444 dbSNP
rs1011773602 1447 dbSNP
rs574102876 1448 dbSNP
rs900001695 1448 dbSNP
rs1171707537 1450 dbSNP
rs11374005 1457 dbSNP
rs1428468327 1464 dbSNP
rs747048733 1471 dbSNP
rs544872057 1472 dbSNP
rs1283426166 1489 dbSNP
rs1376675898 1496 dbSNP
rs1216321341 1497 dbSNP
rs890135284 1500 dbSNP
rs577538419 1508 dbSNP
rs376661949 1509 dbSNP
rs772147693 1513 dbSNP
rs372705919 1514 dbSNP
rs931137168 1517 dbSNP
rs920000753 1520 dbSNP
rs540243004 1524 dbSNP
rs1187619248 1526 dbSNP
rs1390038172 1528 dbSNP
rs879502248 1532 dbSNP
rs915709274 1534 dbSNP
rs573248058 1535 dbSNP
rs991578076 1536 dbSNP
rs960080690 1542 dbSNP
rs749187124 1543 dbSNP
rs977472734 1545 dbSNP
rs1298255424 1551 dbSNP
rs775477757 1552 dbSNP
rs1226312542 1553 dbSNP
rs1021909523 1554 dbSNP
rs1012238915 1555 dbSNP
rs779850789 1556 dbSNP
rs1157962304 1557 dbSNP
rs755849351 1565 dbSNP
rs1449110976 1566 dbSNP
rs555091201 1580 dbSNP
rs1007283596 1584 dbSNP
rs890228819 1587 dbSNP
rs1216891981 1599 dbSNP
rs536422237 1600 dbSNP
rs1463968209 1602 dbSNP
rs1196029617 1609 dbSNP
rs769796282 1610 dbSNP
rs569469467 1611 dbSNP
rs1478069470 1616 dbSNP
rs1051940964 1630 dbSNP
rs1402252025 1653 dbSNP
rs1488098568 1657 dbSNP
rs1387594777 1659 dbSNP
rs1244962242 1666 dbSNP
rs979569556 1677 dbSNP
rs1223802443 1683 dbSNP
rs1232550086 1684 dbSNP
rs1331820708 1684 dbSNP
rs745596623 1693 dbSNP
rs897482157 1707 dbSNP
rs1037627725 1712 dbSNP
rs1012692625 1717 dbSNP
rs878873208 1732 dbSNP
rs958719748 1736 dbSNP
rs1254106752 1737 dbSNP
rs1289373430 1742 dbSNP
rs1035333849 1745 dbSNP
rs557603691 1746 dbSNP
rs1470980457 1751 dbSNP
rs915759965 1761 dbSNP
rs1055611477 1773 dbSNP
rs1277149059 1787 dbSNP
rs1437899787 1789 dbSNP
rs1455439765 1795 dbSNP
rs1394593654 1800 dbSNP
rs1167015423 1801 dbSNP
rs1319370088 1804 dbSNP
rs1043104 1808 dbSNP
rs1391304933 1812 dbSNP
rs938476702 1823 dbSNP
rs187579049 1829 dbSNP
rs977898303 1830 dbSNP
rs71505226 1831 dbSNP
rs1287961759 1834 dbSNP
rs1327540156 1840 dbSNP
rs375924637 1853 dbSNP
rs990432224 1856 dbSNP
rs1356211212 1857 dbSNP
rs1208543199 1860 dbSNP
rs546576987 1864 dbSNP
rs1040173195 1868 dbSNP
rs1483741969 1872 dbSNP
rs964242071 1880 dbSNP
rs745775768 1884 dbSNP
rs1189753743 1902 dbSNP
rs1018465697 1907 dbSNP
rs935375961 1911 dbSNP
rs1161381030 1940 dbSNP
rs1398816061 1949 dbSNP
rs568212559 1968 dbSNP
rs955531930 1969 dbSNP
rs1348799822 1971 dbSNP
rs1030121026 1974 dbSNP
rs968605816 1976 dbSNP
rs993615010 1978 dbSNP
rs897498388 1982 dbSNP
rs1313929684 1987 dbSNP
rs1340223077 1989 dbSNP
rs112415065 1995 dbSNP
rs1272425370 1997 dbSNP
rs758995376 2000 dbSNP
rs1466400603 2003 dbSNP
rs1205178310 2005 dbSNP
rs1273506191 2010 dbSNP
rs1481892630 2030 dbSNP
rs1269029925 2034 dbSNP
rs548522749 2036 dbSNP
rs549098696 2044 dbSNP
rs1201797541 2046 dbSNP
rs958450061 2048 dbSNP
rs894421128 2053 dbSNP
rs1043113 2054 dbSNP
rs530538846 2060 dbSNP
rs1220302864 2062 dbSNP
rs1450197258 2067 dbSNP
rs1167991379 2068 dbSNP
rs376663140 2068 dbSNP
rs549169855 2068 dbSNP
rs753196263 2071 dbSNP
rs13299267 2074 dbSNP
rs115854104 2075 dbSNP
rs1394586258 2086 dbSNP
rs1298393100 2093 dbSNP
rs533018957 2094 dbSNP
rs1339428988 2097 dbSNP
rs78592637 2099 dbSNP
rs1465301516 2102 dbSNP
rs898423278 2111 dbSNP
rs776971209 2115 dbSNP
rs769246664 2116 dbSNP
rs879165367 2121 dbSNP
rs1249858771 2123 dbSNP
rs1465323277 2127 dbSNP
rs566108450 2144 dbSNP
rs1388464197 2151 dbSNP
rs1018076800 2156 dbSNP
rs914599222 2163 dbSNP
rs1377225065 2167 dbSNP
rs145026587 2168 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aaGGUGACGAUGUUGGAGGGucu 5'
            |: :| ||:| : |||||   
Target 5' -uCUUUUCCUGCUG-CUCCC--- 3'
1 - 18
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000406606.3 | 3UTR | UCUUUUCCUGCUGCUCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC 0.635 0.28 0.500 0.33 3 Click to see details
HNSC 0.635 0.28 0.500 0.33 3 Click to see details
HNSC 0.635 0.28 0.500 0.33 3 Click to see details
HNSC 0.635 0.28 0.500 0.33 3 Click to see details
HNSC 0.635 0.28 0.500 0.33 3 Click to see details
HNSC 0.635 0.28 0.500 0.33 3 Click to see details
HNSC 0.635 0.28 0.500 0.33 3 Click to see details
HNSC 0.635 0.28 0.500 0.33 3 Click to see details
HNSC 0.635 0.28 0.500 0.33 3 Click to see details
167 hsa-miR-3192-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT058548 CTTNBP2NL CTTNBP2 N-terminal like 2 2
MIRT139892 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT207395 MAT2A methionine adenosyltransferase 2A 2 6
MIRT294640 ZNF548 zinc finger protein 548 2 2
MIRT324251 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT441475 BEST3 bestrophin 3 2 2
MIRT445233 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 2 2
MIRT446763 ZNF491 zinc finger protein 491 2 2
MIRT451003 EPS15L1 epidermal growth factor receptor pathway substrate 15 like 1 2 2
MIRT452436 QDPR quinoid dihydropteridine reductase 2 2
MIRT452582 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452950 DISC1 disrupted in schizophrenia 1 2 2
MIRT453309 ZNF394 zinc finger protein 394 2 2
MIRT453810 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT454101 TMEM209 transmembrane protein 209 2 2
MIRT456228 LIX1L limb and CNS expressed 1 like 2 4
MIRT456738 TMEM239 transmembrane protein 239 2 2
MIRT456806 SIGLEC14 sialic acid binding Ig like lectin 14 2 4
MIRT457499 SLC35F6 solute carrier family 35 member F6 2 2
MIRT458037 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT459041 ZNF490 zinc finger protein 490 2 2
MIRT459135 FADS6 fatty acid desaturase 6 2 2
MIRT460126 CXCL16 C-X-C motif chemokine ligand 16 2 2
MIRT460506 FAM105A family with sequence similarity 105 member A 2 6
MIRT460944 NOA1 nitric oxide associated 1 2 4
MIRT461101 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT462641 PHF5A PHD finger protein 5A 2 2
MIRT463584 ZBTB38 zinc finger and BTB domain containing 38 2 2
MIRT466567 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 2
MIRT467090 SRRD SRR1 domain containing 2 2
MIRT471093 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472596 NACC1 nucleus accumbens associated 1 2 2
MIRT473084 MORN4 MORN repeat containing 4 2 2
MIRT475977 GTPBP2 GTP binding protein 2 2 2
MIRT477054 FAM210A family with sequence similarity 210 member A 2 2
MIRT478303 DDX19A DEAD-box helicase 19A 2 4
MIRT478489 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478500 CYP1B1 cytochrome P450 family 1 subfamily B member 1 2 2
MIRT478858 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479096 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 2 2
MIRT479180 CLSPN claspin 2 2
MIRT479215 CLCC1 chloride channel CLIC like 1 2 2
MIRT481176 AVL9 AVL9 cell migration associated 2 6
MIRT483032 KHSRP KH-type splicing regulatory protein 2 4
MIRT485150 RASL10B RAS like family 10 member B 2 2
MIRT486104 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486319 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT489443 IFNLR1 interferon lambda receptor 1 2 2
MIRT489585 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489702 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490184 TMEM63C transmembrane protein 63C 2 2
MIRT491211 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491276 DHX40 DEAH-box helicase 40 2 2
MIRT495162 CNGA2 cyclic nucleotide gated channel alpha 2 2 4
MIRT495222 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT496820 CHRNB2 cholinergic receptor nicotinic beta 2 subunit 2 2
MIRT498602 KRT8 keratin 8 2 2
MIRT500003 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT502065 KRAS KRAS proto-oncogene, GTPase 2 2
MIRT508197 SLC35E1 solute carrier family 35 member E1 2 2
MIRT508477 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT509635 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT511039 NRF1 nuclear respiratory factor 1 2 2
MIRT516684 ZNF860 zinc finger protein 860 2 4
MIRT518394 ZNF250 zinc finger protein 250 2 2
MIRT518907 CDC14B cell division cycle 14B 2 2
MIRT520502 TRAM2 translocation associated membrane protein 2 2 6
MIRT521459 RAD51 RAD51 recombinase 2 2
MIRT522354 NCKIPSD NCK interacting protein with SH3 domain 2 4
MIRT522594 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT523267 HIST1H2AE histone cluster 1 H2A family member e 2 2
MIRT523532 GLUL glutamate-ammonia ligase 2 4
MIRT524186 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT526842 PHC1 polyhomeotic homolog 1 2 2
MIRT528729 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT540695 BMP3 bone morphogenetic protein 3 2 2
MIRT544483 TRIM4 tripartite motif containing 4 2 2
MIRT551566 LETM1 leucine zipper and EF-hand containing transmembrane protein 1 2 2
MIRT563619 ZNF277 zinc finger protein 277 2 2
MIRT564467 SLC35E2 solute carrier family 35 member E2 2 2
MIRT565031 VAV2 vav guanine nucleotide exchange factor 2 2 2
MIRT570294 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT572932 VDAC2 voltage dependent anion channel 2 2 2
MIRT573501 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573675 HES6 hes family bHLH transcription factor 6 2 2
MIRT609619 TRPC4AP transient receptor potential cation channel subfamily C member 4 associated protein 2 2
MIRT611966 PKD1 polycystin 1, transient receptor potential channel interacting 2 2
MIRT613930 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2 2
MIRT617733 ATCAY ATCAY, caytaxin 2 4
MIRT618878 MBL2 mannose binding lectin 2 2 2
MIRT627590 SHROOM3 shroom family member 3 2 2
MIRT628516 ZNF878 zinc finger protein 878 2 2
MIRT633964 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT634530 NEGR1 neuronal growth regulator 1 2 2
MIRT635455 APOLD1 apolipoprotein L domain containing 1 2 2
MIRT636412 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT639672 PPEF2 protein phosphatase with EF-hand domain 2 2 6
MIRT642667 RGS6 regulator of G protein signaling 6 2 2
MIRT644080 A4GALT alpha 1,4-galactosyltransferase (P blood group) 2 2
MIRT647318 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT647942 RNF152 ring finger protein 152 2 2
MIRT648687 AP1M1 adaptor related protein complex 1 mu 1 subunit 2 2
MIRT648817 ZNF689 zinc finger protein 689 2 2
MIRT650347 TREM1 triggering receptor expressed on myeloid cells 1 2 2
MIRT650374 MOCS3 molybdenum cofactor synthesis 3 2 4
MIRT655935 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT663778 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT664297 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT665842 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT668929 COL9A2 collagen type IX alpha 2 chain 2 2
MIRT669673 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669907 KIAA0754 KIAA0754 2 4
MIRT670248 TRIM13 tripartite motif containing 13 2 2
MIRT670368 ULBP3 UL16 binding protein 3 2 4
MIRT670642 BVES blood vessel epicardial substance 2 2
MIRT670749 HOOK3 hook microtubule tethering protein 3 2 2
MIRT671184 ZNF891 zinc finger protein 891 2 2
MIRT673946 ZNF500 zinc finger protein 500 2 2
MIRT674682 PLCE1 phospholipase C epsilon 1 2 2
MIRT677912 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678876 FAM118A family with sequence similarity 118 member A 2 2
MIRT679528 RAB36 RAB36, member RAS oncogene family 2 2
MIRT680589 ZNF573 zinc finger protein 573 2 2
MIRT680650 KIAA1456 KIAA1456 2 2
MIRT681149 INTS7 integrator complex subunit 7 2 2
MIRT681177 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681234 DUSP19 dual specificity phosphatase 19 2 2
MIRT681626 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681643 SCRG1 stimulator of chondrogenesis 1 2 2
MIRT681926 KAT7 lysine acetyltransferase 7 2 2
MIRT682050 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT682156 SMS spermine synthase 2 2
MIRT683555 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT684304 TRUB2 TruB pseudouridine synthase family member 2 2 2
MIRT684458 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT685986 CCDC77 coiled-coil domain containing 77 2 2
MIRT686782 AZF1 azoospermia factor 1 2 2
MIRT687329 OSMR oncostatin M receptor 2 2
MIRT687629 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT688792 CCNB1 cyclin B1 2 2
MIRT689756 PRR13 proline rich 13 2 2
MIRT690823 SGSM2 small G protein signaling modulator 2 2 2
MIRT691310 ZNF681 zinc finger protein 681 2 2
MIRT692676 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT693508 MOB3A MOB kinase activator 3A 2 2
MIRT694657 C14orf119 chromosome 14 open reading frame 119 2 2
MIRT694889 ZNF417 zinc finger protein 417 2 2
MIRT695740 ZNF117 zinc finger protein 117 2 2
MIRT697101 GPKOW G-patch domain and KOW motifs 2 2
MIRT698968 SPAST spastin 2 2
MIRT700379 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT703930 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT706234 SYT15 synaptotagmin 15 2 2
MIRT706494 SEPT6 septin 6 2 2
MIRT710451 BTNL3 butyrophilin like 3 2 2
MIRT711684 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT711997 F9 coagulation factor IX 2 2
MIRT712727 NCAPG2 non-SMC condensin II complex subunit G2 2 2
MIRT713111 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT713156 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT713440 AJAP1 adherens junctions associated protein 1 2 2
MIRT713830 NUP98 nucleoporin 98 2 2
MIRT714979 RAB21 RAB21, member RAS oncogene family 2 2
MIRT717411 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT718433 ZNF85 zinc finger protein 85 2 2
MIRT720575 SDHAF2 succinate dehydrogenase complex assembly factor 2 2 2
MIRT725098 TMEM120B transmembrane protein 120B 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-3192 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3192 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-3192 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3192-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-3192-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-3192-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-3192-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-3192-5p Platinum 23939 resistant tissue
hsa-miR-3192-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3192-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-3192-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

Error report submission