pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TPD52   
Synonyms D52, N8L, PC-1, PrLZ, hD52
Description tumor protein D52
Transcript NM_001025252   
Other Transcripts NM_001025253 , NM_005079   
Expression
Putative miRNA Targets on TPD52
3'UTR of TPD52
(miRNA target sites are highlighted)
>TPD52|NM_001025252|3'UTR
   1 GATTCCTACCTTTGTTCTGCTACCCACTGCCAGATGCTGCAAGCGAGGTCCAAGCACATCTTGTCAACATGCATTGCCAT
  81 GAATTTCTACCAGATGTGCTTTTATTTAGCTTTACATATTCCTTTGACCAAATAGTTTGTGGGTTAAACAAAATGAAAAT
 161 ATCTTCACCTCTATTCTTGGGAAACACCCTTTAGTGTACATTTATGTTCCTTTATTTAGGAAACACCATTATAAAAACAC
 241 TTATAGTAAATGGGGACATTCACTATAATGATCTAAGAAGCTACAGATTGTCATAGTTGTTTTCCTGCTTTACAAAATTG
 321 CTCCAGATCTGGAATGCCAGTTTGACCTTTGTCTTCTATAATATTTCCTTTTTTTCCCCTCTTTGAATCTCTGTATATTT
 401 GATTCTTAACTAAAATTGTTCTCTTAAATATTCTGAATCCTGGTAATTAAAAGTTTGGGTGTATTTTCTTTACCTCCAAG
 481 GAAAGAACTACTAGCTACAAAAAATATTTTGGAATAAGCATTGTTTTGGTATAAGGTACATATTTTGGTTGAAGACACCA
 561 GACTGAAGTAAACAGCTGTGCATCCAATTTATTATAGTTTTGTAAGTAACAATATGTAATCAAACTTCTAGGTGACTTGA
 641 GAGTGGAACCTCCTATATCATTATTTAGCACCGTTTGTGACAGTAACCATTTCAGTGTATTGTTTATTATACCACTTATA
 721 TCAACTTATTTTTCACCAGGTTAAAATTTTAATTTCTACAAAATAACATTCTGAATCAAGCACACTGTATGTTCAGTAGG
 801 TTGAACTATGAACACTGTCATCAATGTTCAGTTCAAAAGCCTGAAAGTTTAGATCTAGAAGCTGGTAAAAATGACAATAT
 881 CAATCACATTAGGGGAACCATTGTTGTCTTCACTTAATCCATTTAGCACTATTTAAAATAAGCACACCAAGTTATATGAC
 961 TAATATAACTTGAAAATTTTTTATACTGAGGGGTTGGTGATAACTCTTGAGGATGTAATGCATTAATAAAAATCAACTCA
1041 TCATTTTCTACTTGTTTTCAATGTGTTGGAAACTGTAAAATGATACTGTAGAACCTGTCTCCTACTTTGAAAACTGAATG
1121 TCAGGGCTGAGTGAATCAAAGTGTCTAGACATATTTGCATAGAGGCCAAGGTATTCTATTCTAATAACTGCTTACTCAAC
1201 ACTACCACCTTTTCCTTATACTGTATATGATTATGGCCTACAATGTTGTATTTGTTATTTATTAAATTGTGATTGTTTTA
1281 TTATTGTTTATGCCAAATGTTAACTGCCAAGCTTGGAGTGACCTAAAGCATTTTTTAAAAGCATGGCTAGATTTACTTCA
1361 GTATAAATTATCTTATGAAAACCAAATTTTAAAAGCCACAGGTGTTGATTGTTATAAAATAACATGCTGCCATTCTTGAT
1441 TGCTAGAGTTTTTGTTAGTACTTTGGATGCAATTAAAACTATGTGCTATCACATGTGAAAAGCTTAATAAATTCCATCTA
1521 TCAGTAGTATAGGTCTCAATATTTATTATGAGACCAGTGGTCTGGAAACAGCTTGTTGTACCGAATCAACTGGAGTCTAT
1601 GCTTAAAAAAAAAAAATTTTTTTTTAACCATCCTTAAATTATTGCTTAATGGTATCATATTAACATATTCTAAATAAGGG
1681 CTTTAAGGCACAGGCTGTTGAAGCATTTTCTCAGAGGAGTGGATCTGTAGAAGTCTGTCTTTCTATAGAAATATTGTGCT
1761 TACTCAAGTGTTAAATTATTTTTTCTATGAACTAGTCTACTTCTTAAAATTCAAACATATTCTTTTGATCACATTGTTTC
1841 TTGAGCATCCTGCCCTGCTACTAACTTTTCAACAAGGCAAAATGGAGTAAAGTGGCAATTTCTTTAGATGAGTGAAATAC
1921 CCTCAAGTCTCTTTTCTGCCCAAAAAGGGAAAAGTGATAGAAATGGGGGTGGCAAGTGGGGTGAGTGGATGAAGGTGGGT
2001 ATTGGGGGTGGCTGTGAAAGAAAATAATGGAGAATCACTTTTCTAGACATCTACCTATACTTAATCTAAGAAACAAAGTA
2081 ATCTACTGTAAAGTACTCTGCCCCTTGAAAGAAGTATTAAAAAGAGTGAGGATGGATTTAGAAAAAAACATGAATTTAGA
2161 AATATTCAAAATGGTTTTTGTGGCAGATTCAATATTATGAATTCACAGATATTTAAAGAATGAGAAACATAGTAATTAGT
2241 AGAAATGCCAGAAACAGTTCCTGGTTCCTCTTGTGTTTGACACTAAGAAAATAGCAAGAGTGTGAAATCTCAGATACTTA
2321 TGAAATCTCACAGATGTAAGGACTCAAGTGTAGAAGAAAATATCCCCTTCTTACAAAAAGAAATGTCAATTTATGGAGTT
2401 TGTGGGAAATAGGGCAAGAATTCTTATGCTTATGAGAGCCAAGTAGTCAGTGGAAGAGAGTAGAGCTCAAAACTGGATTA
2481 TCACCTTAGCAACTTAGAATAGTTTGAAATAGAAAAAAAGTATTTAATTTGGATCTGGATCTGTTAAGATATGCACAGTC
2561 TATTTTTTGTATAGTATTGGAAAATAAAAATGCTATAATTTGGGTATGGGTTCTTTTGTATACATTACCTGCCCATTGAG
2641 GAAAGGGGCAAGTCCATTATGCAACTTCTCTCCAAACCCTTCATATTCTGGATATGATACTTAAAGAGCCATGAGCAGCT
2721 ACATTCTGCCTATCAGAAGGCATTTATTAAATGACTGCTTGCTGAAGATGTGTCCAAAGAGATCCTACATTAAGGTCATT
2801 TGTCAGAATGATGTTTGTGTTTGTTTAGAGTTGGCTGACCTCCAACTCCTGGGGTCAAGGAATCCTACTGCCTTAGCTTC
2881 CCAAATAGCTAGGACTATAGGCATGCACCCGGCCATGTGTTTTATTTATAGCTCTTAAAGCCCAGATGAAGAAATCACAT
2961 TTTTGCCCATAGTGAAGAAACATTTGGCCATTGATTAGTCCTTATTTTCAGTGACTGTCCTGTTTTCATTAGATTAGAGA
3041 GACCCTGTGTGGGCCACAGTTAATATAAACCATTATCACTTTTAAGTAAACCTGCACATCTTAGATTTCATAATTTCCTT
3121 ATTGTTCTGACTCAAAATGAACTAAGAGCTTTTCACTTTTTGTTTGTAAGTTCTCAGAGAGTCGGGTCTGCAAGTGCTTT
3201 TGCCTGCCAGGATTTTGTACTCAAATAAATGCTATTTGGCAACTAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aggacCUACGUUUAAAAu 5'
               |:|  ||||||| 
Target 5' caccaGGTTAAAATTTTa 3'
734 - 751 145.00 -7.80
2
miRNA  3' agGACC--UACGUUUAAAAu 5'
            ||||  ||  ||| ||| 
Target 5' tcCTGGTAATTAAAAGTTTg 3'
438 - 457 122.00 -8.60
3
miRNA  3' agGACCU-ACG--UUUAAAAu 5'
            || || |||  :|:|||| 
Target 5' ttCTTGATTGCTAGAGTTTTt 3'
1433 - 1453 122.00 -7.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN19659220 45 COSMIC
COSN31598474 54 COSMIC
COSN28840518 67 COSMIC
COSN31535850 71 COSMIC
COSN30515173 79 COSMIC
COSN30160096 87 COSMIC
COSN30159819 93 COSMIC
COSN17453679 143 COSMIC
COSN28201288 285 COSMIC
COSN30172715 881 COSMIC
COSN23680340 1254 COSMIC
COSN26035358 1276 COSMIC
COSN31580157 1401 COSMIC
COSN29001159 1525 COSMIC
COSN28641025 1527 COSMIC
COSN31514755 1615 COSMIC
COSN23280017 1625 COSMIC
COSN29607843 1651 COSMIC
COSN31608975 1743 COSMIC
COSN30176807 1765 COSMIC
COSN32005929 2027 COSMIC
COSN5865483 2101 COSMIC
COSN19391907 2373 COSMIC
COSN27188211 2661 COSMIC
COSN27186496 2662 COSMIC
COSN21631300 2734 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs780914440 1 dbSNP
rs768907862 4 dbSNP
rs747252624 7 dbSNP
rs780055022 8 dbSNP
rs758520020 14 dbSNP
rs1415444758 17 dbSNP
rs1184113140 21 dbSNP
rs750406632 33 dbSNP
rs1251000692 37 dbSNP
rs983877172 38 dbSNP
rs779599352 44 dbSNP
rs1802745 45 dbSNP
rs1220429009 48 dbSNP
rs754306174 50 dbSNP
rs764519706 51 dbSNP
rs1273648603 52 dbSNP
rs992486495 57 dbSNP
rs959948918 70 dbSNP
rs569497816 72 dbSNP
rs1226165176 74 dbSNP
rs912952404 90 dbSNP
rs1305344679 91 dbSNP
rs551034081 92 dbSNP
rs1031894523 95 dbSNP
rs552785156 98 dbSNP
rs1404904273 103 dbSNP
rs977607657 119 dbSNP
rs976403633 121 dbSNP
rs968860142 134 dbSNP
rs1250465583 136 dbSNP
rs1215270991 149 dbSNP
rs1339623910 161 dbSNP
rs1021745163 166 dbSNP
rs1007630637 178 dbSNP
rs889192279 181 dbSNP
rs1490112169 189 dbSNP
rs150178784 201 dbSNP
rs997545507 206 dbSNP
rs1430429898 222 dbSNP
rs1450383163 225 dbSNP
rs747233072 228 dbSNP
rs1028260586 229 dbSNP
rs1165653144 233 dbSNP
rs529311659 243 dbSNP
rs141101389 244 dbSNP
rs542306009 248 dbSNP
rs962139421 255 dbSNP
rs1364679410 263 dbSNP
rs779407484 272 dbSNP
rs1392608368 274 dbSNP
rs546689602 282 dbSNP
rs1382359048 287 dbSNP
rs747068593 289 dbSNP
rs1014273716 305 dbSNP
rs895839992 313 dbSNP
rs530150752 321 dbSNP
rs1034354071 329 dbSNP
rs561126335 335 dbSNP
rs1183306927 347 dbSNP
rs1262482771 357 dbSNP
rs1472914753 363 dbSNP
rs568136248 367 dbSNP
rs948497608 376 dbSNP
rs1009999670 379 dbSNP
rs1185699938 383 dbSNP
rs891546907 393 dbSNP
rs1042638 405 dbSNP
rs1347246082 434 dbSNP
rs1454779802 442 dbSNP
rs1320418169 444 dbSNP
rs1275289119 447 dbSNP
rs915680600 449 dbSNP
rs992957074 456 dbSNP
rs938367053 457 dbSNP
rs1310653096 459 dbSNP
rs752924044 461 dbSNP
rs924239895 471 dbSNP
rs1226463787 475 dbSNP
rs1230295724 480 dbSNP
rs1308886865 486 dbSNP
rs765015186 490 dbSNP
rs977683068 491 dbSNP
rs1040734942 494 dbSNP
rs968933681 494 dbSNP
rs1021776200 498 dbSNP
rs1208064650 511 dbSNP
rs943793636 521 dbSNP
rs986299304 523 dbSNP
rs953649457 537 dbSNP
rs910917154 538 dbSNP
rs1244043712 539 dbSNP
rs1049385723 541 dbSNP
rs1483048600 541 dbSNP
rs932254637 556 dbSNP
rs1420011076 563 dbSNP
rs754860651 567 dbSNP
rs1410372630 574 dbSNP
rs1287924178 592 dbSNP
rs753696971 594 dbSNP
rs1336815060 602 dbSNP
rs973571733 612 dbSNP
rs1445386922 620 dbSNP
rs1299485512 628 dbSNP
rs962170568 631 dbSNP
rs1227530247 643 dbSNP
rs997976009 646 dbSNP
rs1325582692 649 dbSNP
rs1223968357 652 dbSNP
rs546539739 653 dbSNP
rs1309180778 661 dbSNP
rs897834266 671 dbSNP
rs1457840422 672 dbSNP
rs1014933488 673 dbSNP
rs1481194170 679 dbSNP
rs530700132 697 dbSNP
rs1347672328 698 dbSNP
rs754222507 699 dbSNP
rs1481708367 705 dbSNP
rs766381545 709 dbSNP
rs1423893001 719 dbSNP
rs1034794732 720 dbSNP
rs1172147513 721 dbSNP
rs1001516391 725 dbSNP
rs1409055077 732 dbSNP
rs1166263413 740 dbSNP
rs1347094422 759 dbSNP
rs1004168489 764 dbSNP
rs888353097 780 dbSNP
rs1274141717 781 dbSNP
rs778159916 783 dbSNP
rs1344453677 785 dbSNP
rs1217529535 789 dbSNP
rs1405636060 789 dbSNP
rs1275454979 791 dbSNP
rs1343137427 796 dbSNP
rs755624205 801 dbSNP
rs969056369 803 dbSNP
rs1272950736 804 dbSNP
rs564753642 806 dbSNP
rs1010030943 808 dbSNP
rs1246613121 810 dbSNP
rs1252184620 817 dbSNP
rs544778923 824 dbSNP
rs1012763464 830 dbSNP
rs1166272201 835 dbSNP
rs528178252 850 dbSNP
rs1425034038 859 dbSNP
rs144110317 863 dbSNP
rs542347953 876 dbSNP
rs1434489271 877 dbSNP
rs1272006793 879 dbSNP
rs889530426 886 dbSNP
rs1049873751 891 dbSNP
rs79145344 894 dbSNP
rs1362099308 900 dbSNP
rs1210793855 909 dbSNP
rs767141106 942 dbSNP
rs920855370 943 dbSNP
rs1450396725 946 dbSNP
rs556971707 963 dbSNP
rs1041350179 965 dbSNP
rs560385720 975 dbSNP
rs1248126030 976 dbSNP
rs1226733496 983 dbSNP
rs761552520 991 dbSNP
rs544921547 1006 dbSNP
rs1386686320 1012 dbSNP
rs879615532 1019 dbSNP
rs1162429806 1025 dbSNP
rs986759776 1032 dbSNP
rs1402390178 1033 dbSNP
rs953580510 1035 dbSNP
rs544953692 1039 dbSNP
rs976235428 1057 dbSNP
rs1461529269 1061 dbSNP
rs1387201429 1065 dbSNP
rs767617921 1066 dbSNP
rs1245708157 1067 dbSNP
rs10098470 1073 dbSNP
rs1354624449 1075 dbSNP
rs1226004169 1083 dbSNP
rs993000380 1084 dbSNP
rs1464091912 1089 dbSNP
rs960414726 1094 dbSNP
rs927380420 1098 dbSNP
rs1442648032 1099 dbSNP
rs1186333284 1100 dbSNP
rs759983566 1102 dbSNP
rs748278274 1115 dbSNP
rs1471017013 1124 dbSNP
rs951995846 1126 dbSNP
rs1026908809 1127 dbSNP
rs1456839342 1133 dbSNP
rs562477844 1134 dbSNP
rs1191648214 1140 dbSNP
rs1396847727 1143 dbSNP
rs544341557 1148 dbSNP
rs1339116069 1149 dbSNP
rs1349171191 1151 dbSNP
rs955937967 1155 dbSNP
rs1289592014 1158 dbSNP
rs192437723 1160 dbSNP
rs1227025366 1161 dbSNP
rs1057359245 1170 dbSNP
rs1008032410 1189 dbSNP
rs1331459713 1192 dbSNP
rs1002653485 1201 dbSNP
rs747486420 1202 dbSNP
rs1253614940 1208 dbSNP
rs1439401425 1210 dbSNP
rs1182624998 1212 dbSNP
rs1028038985 1225 dbSNP
rs1178436305 1237 dbSNP
rs1233026831 1243 dbSNP
rs1379475067 1247 dbSNP
rs1041425761 1249 dbSNP
rs1172267016 1254 dbSNP
rs1400323067 1254 dbSNP
rs1310758952 1259 dbSNP
rs898203790 1261 dbSNP
rs1350193831 1262 dbSNP
rs111340419 1266 dbSNP
rs940952646 1269 dbSNP
rs1331222544 1272 dbSNP
rs914205028 1283 dbSNP
rs1442193721 1290 dbSNP
rs1050703702 1292 dbSNP
rs1317938995 1313 dbSNP
rs188773630 1348 dbSNP
rs1341042984 1360 dbSNP
rs923500418 1364 dbSNP
rs1481925276 1365 dbSNP
rs762790520 1373 dbSNP
rs867653469 1374 dbSNP
rs1198245711 1376 dbSNP
rs1433906229 1376 dbSNP
rs1057488893 1385 dbSNP
rs938821930 1387 dbSNP
rs183320915 1391 dbSNP
rs1042683 1398 dbSNP
rs1370370215 1399 dbSNP
rs1379087782 1412 dbSNP
rs779155909 1414 dbSNP
rs984838067 1423 dbSNP
rs1802744 1424 dbSNP
rs769755109 1428 dbSNP
rs952026437 1429 dbSNP
rs1386638641 1443 dbSNP
rs947470255 1446 dbSNP
rs1327623726 1447 dbSNP
rs1228718024 1455 dbSNP
rs191455137 1456 dbSNP
rs1339858645 1458 dbSNP
rs187796625 1459 dbSNP
rs1266034254 1464 dbSNP
rs1389685978 1472 dbSNP
rs958858182 1480 dbSNP
rs1186719526 1481 dbSNP
rs1488121746 1488 dbSNP
rs1035551883 1494 dbSNP
rs1191272736 1495 dbSNP
rs1265388771 1496 dbSNP
rs1262721947 1497 dbSNP
rs1002679718 1516 dbSNP
rs1451366435 1523 dbSNP
rs955969203 1524 dbSNP
rs1389760335 1525 dbSNP
rs1200029529 1530 dbSNP
rs1019504734 1532 dbSNP
rs902996468 1550 dbSNP
rs1020000704 1552 dbSNP
rs753629729 1556 dbSNP
rs1235741280 1572 dbSNP
rs567686242 1582 dbSNP
rs1342043343 1583 dbSNP
rs1435159833 1588 dbSNP
rs892843185 1590 dbSNP
rs1229613560 1594 dbSNP
rs1319539887 1594 dbSNP
rs898236534 1599 dbSNP
rs1294814879 1601 dbSNP
rs1230012278 1605 dbSNP
rs1050508158 1616 dbSNP
rs1463723961 1617 dbSNP
rs1466350130 1617 dbSNP
rs550528174 1617 dbSNP
rs555124532 1617 dbSNP
rs902076866 1619 dbSNP
rs182666299 1620 dbSNP
rs1415013881 1623 dbSNP
rs886696306 1625 dbSNP
rs1057349532 1626 dbSNP
rs938922463 1626 dbSNP
rs1393929745 1628 dbSNP
rs940845320 1630 dbSNP
rs571163502 1654 dbSNP
rs1404163008 1656 dbSNP
rs376105941 1665 dbSNP
rs908000856 1681 dbSNP
rs984910138 1688 dbSNP
rs1313239777 1693 dbSNP
rs199974609 1698 dbSNP
rs1303027538 1704 dbSNP
rs930706524 1710 dbSNP
rs756011126 1714 dbSNP
rs947502751 1725 dbSNP
rs991208998 1729 dbSNP
rs1227649086 1730 dbSNP
rs139271337 1732 dbSNP
rs1315162504 1735 dbSNP
rs776204937 1738 dbSNP
rs190004860 1745 dbSNP
rs988789643 1753 dbSNP
rs1180472965 1754 dbSNP
rs934623471 1756 dbSNP
rs1473214363 1759 dbSNP
rs551169993 1760 dbSNP
rs912545853 1766 dbSNP
rs986774878 1773 dbSNP
rs954082059 1779 dbSNP
rs1176400539 1785 dbSNP
rs564143394 1785 dbSNP
rs185245639 1791 dbSNP
rs1187187659 1795 dbSNP
rs1422266724 1797 dbSNP
rs1258755972 1805 dbSNP
rs1036031233 1820 dbSNP
rs1028187934 1825 dbSNP
rs973875508 1827 dbSNP
rs1409168232 1833 dbSNP
rs981291531 1837 dbSNP
rs1286344021 1843 dbSNP
rs962473490 1845 dbSNP
rs967187272 1849 dbSNP
rs1279684411 1853 dbSNP
rs1020072726 1854 dbSNP
rs1208930850 1861 dbSNP
rs1277244051 1864 dbSNP
rs559279238 1865 dbSNP
rs1273126087 1875 dbSNP
rs1011317202 1888 dbSNP
rs960435285 1889 dbSNP
rs1250222905 1892 dbSNP
rs1478759074 1896 dbSNP
rs1207837738 1897 dbSNP
rs1339573408 1898 dbSNP
rs892865900 1900 dbSNP
rs1423782921 1902 dbSNP
rs1283079195 1905 dbSNP
rs1170051241 1910 dbSNP
rs750452497 1912 dbSNP
rs996265164 1916 dbSNP
rs901473049 1918 dbSNP
rs1040649627 1924 dbSNP
rs1428838498 1934 dbSNP
rs1306163761 1936 dbSNP
rs1351541005 1939 dbSNP
rs1437021612 1947 dbSNP
rs35636461 1950 dbSNP
rs1275531285 1953 dbSNP
rs1003148623 1958 dbSNP
rs1232414497 1965 dbSNP
rs906094620 1968 dbSNP
rs1044582234 1970 dbSNP
rs372755321 1972 dbSNP
rs1204873369 1973 dbSNP
rs79476175 1981 dbSNP
rs940918821 1982 dbSNP
rs1293488182 1983 dbSNP
rs1222887888 1995 dbSNP
rs1011676695 2005 dbSNP
rs1190159484 2008 dbSNP
rs1348331529 2009 dbSNP
rs1390385415 2014 dbSNP
rs886639236 2043 dbSNP
rs542735894 2054 dbSNP
rs1448712078 2062 dbSNP
rs528961338 2064 dbSNP
rs182001574 2081 dbSNP
rs916670697 2088 dbSNP
rs934743797 2089 dbSNP
rs543412203 2091 dbSNP
rs1350393144 2100 dbSNP
rs1349416190 2109 dbSNP
rs1438776534 2114 dbSNP
rs990890775 2122 dbSNP
rs939356887 2124 dbSNP
rs1397374612 2131 dbSNP
rs151276904 2131 dbSNP
rs927947685 2132 dbSNP
rs1162713226 2138 dbSNP
rs981364178 2144 dbSNP
rs1358860354 2149 dbSNP
rs75969194 2151 dbSNP
rs1289764949 2152 dbSNP
rs1420329712 2153 dbSNP
rs79275443 2162 dbSNP
rs921158152 2206 dbSNP
rs1248028654 2209 dbSNP
rs1472472664 2214 dbSNP
rs973906760 2215 dbSNP
rs962505624 2220 dbSNP
rs1239022600 2222 dbSNP
rs573415797 2228 dbSNP
rs1472988192 2233 dbSNP
rs1162645822 2235 dbSNP
rs908365002 2248 dbSNP
rs1460004732 2255 dbSNP
rs989924536 2255 dbSNP
rs1161470314 2260 dbSNP
rs1438881020 2261 dbSNP
rs1434684867 2268 dbSNP
rs982566721 2270 dbSNP
rs1288577462 2276 dbSNP
rs957207087 2301 dbSNP
rs1342687040 2311 dbSNP
rs1207584355 2315 dbSNP
rs1284192779 2320 dbSNP
rs1357793635 2321 dbSNP
rs1029165211 2322 dbSNP
rs1327827719 2324 dbSNP
rs1034718682 2325 dbSNP
rs1280274336 2334 dbSNP
rs553278974 2335 dbSNP
rs1186573776 2337 dbSNP
rs1002248242 2340 dbSNP
rs575781244 2341 dbSNP
rs114676196 2345 dbSNP
rs1023133292 2346 dbSNP
rs1412844732 2366 dbSNP
rs557103393 2368 dbSNP
rs1157106859 2371 dbSNP
rs762532918 2389 dbSNP
rs1011707879 2393 dbSNP
rs1289968363 2394 dbSNP
rs1415186505 2398 dbSNP
rs1333936049 2399 dbSNP
rs893345871 2405 dbSNP
rs1442899167 2407 dbSNP
rs966140296 2410 dbSNP
rs1330413734 2415 dbSNP
rs1412261533 2415 dbSNP
rs774790312 2417 dbSNP
rs1236237874 2420 dbSNP
rs1385177924 2427 dbSNP
rs567394448 2434 dbSNP
rs1199472603 2435 dbSNP
rs886671953 2436 dbSNP
rs1483894334 2439 dbSNP
rs1205839927 2440 dbSNP
rs1166013610 2442 dbSNP
rs1250966725 2443 dbSNP
rs1049318618 2444 dbSNP
rs1410281223 2452 dbSNP
rs1179754752 2459 dbSNP
rs1379384579 2461 dbSNP
rs995427407 2463 dbSNP
rs1173208051 2465 dbSNP
rs191858261 2470 dbSNP
rs1309230865 2475 dbSNP
rs932607776 2492 dbSNP
rs771206492 2495 dbSNP
rs1055621579 2497 dbSNP
rs1246661501 2500 dbSNP
rs939450509 2507 dbSNP
rs921201003 2517 dbSNP
rs928004147 2519 dbSNP
rs1042358705 2520 dbSNP
rs1232127005 2520 dbSNP
rs1331135671 2520 dbSNP
rs1344114990 2523 dbSNP
rs1253074722 2527 dbSNP
rs1273565035 2533 dbSNP
rs945992396 2538 dbSNP
rs982598006 2554 dbSNP
rs761244726 2556 dbSNP
rs989999481 2557 dbSNP
rs1193296222 2558 dbSNP
rs1393487529 2559 dbSNP
rs1451795225 2569 dbSNP
rs957433306 2571 dbSNP
rs980466348 2583 dbSNP
rs773769696 2595 dbSNP
rs117386299 2609 dbSNP
rs1295763489 2610 dbSNP
rs1224156692 2620 dbSNP
rs965808572 2622 dbSNP
rs1343966711 2635 dbSNP
rs1018644513 2639 dbSNP
rs1439499585 2647 dbSNP
rs529140442 2659 dbSNP
rs1021913925 2660 dbSNP
rs1004568919 2675 dbSNP
rs990385015 2678 dbSNP
rs1435290659 2683 dbSNP
rs187020756 2694 dbSNP
rs1305508947 2698 dbSNP
rs1246956168 2708 dbSNP
rs1373364573 2713 dbSNP
rs181509980 2721 dbSNP
rs748268364 2731 dbSNP
rs796087794 2733 dbSNP
rs1357213357 2753 dbSNP
rs1213138261 2762 dbSNP
rs1251150579 2764 dbSNP
rs1466435994 2766 dbSNP
rs528352696 2770 dbSNP
rs973677484 2771 dbSNP
rs1027915709 2772 dbSNP
rs1427083908 2782 dbSNP
rs995061674 2783 dbSNP
rs1369542894 2792 dbSNP
rs1461315344 2795 dbSNP
rs868329997 2796 dbSNP
rs377011354 2817 dbSNP
rs1162188066 2823 dbSNP
rs1390140828 2828 dbSNP
rs1320479826 2829 dbSNP
rs528903407 2845 dbSNP
rs899876172 2846 dbSNP
rs1055292283 2849 dbSNP
rs1359669557 2850 dbSNP
rs1004065351 2854 dbSNP
rs1313435345 2861 dbSNP
rs749833814 2869 dbSNP
rs1231322278 2873 dbSNP
rs752109284 2878 dbSNP
rs886997119 2898 dbSNP
rs1280015991 2910 dbSNP
rs906610410 2911 dbSNP
rs1485134214 2912 dbSNP
rs1042430875 2913 dbSNP
rs548867725 2914 dbSNP
rs1395210465 2919 dbSNP
rs915200671 2928 dbSNP
rs1186374296 2929 dbSNP
rs1457292055 2936 dbSNP
rs1157997730 2939 dbSNP
rs980964039 2940 dbSNP
rs561859289 2951 dbSNP
rs1187350698 2953 dbSNP
rs1054817191 2954 dbSNP
rs935923861 2961 dbSNP
rs1467202783 2968 dbSNP
rs189869625 2969 dbSNP
rs1374577581 2975 dbSNP
rs974584303 2977 dbSNP
rs989076885 2979 dbSNP
rs1215986937 2981 dbSNP
rs778998001 2984 dbSNP
rs1306292068 3008 dbSNP
rs1315361708 3013 dbSNP
rs1212447967 3019 dbSNP
rs1256985287 3025 dbSNP
rs965843780 3035 dbSNP
rs867774432 3037 dbSNP
rs1236474212 3041 dbSNP
rs1348470427 3042 dbSNP
rs768875701 3044 dbSNP
rs1472672104 3069 dbSNP
rs957634889 3071 dbSNP
rs1405092639 3072 dbSNP
rs1227794005 3076 dbSNP
rs1031843706 3077 dbSNP
rs977623847 3082 dbSNP
rs955761750 3086 dbSNP
rs1371090542 3091 dbSNP
rs1441312896 3092 dbSNP
rs1297702345 3101 dbSNP
rs1371223489 3111 dbSNP
rs1221193962 3116 dbSNP
rs1304412046 3121 dbSNP
rs983165165 3124 dbSNP
rs950366034 3127 dbSNP
rs563325098 3135 dbSNP
rs1277132656 3158 dbSNP
rs1363052916 3160 dbSNP
rs112544979 3168 dbSNP
rs371603956 3168 dbSNP
rs1230714678 3172 dbSNP
rs1027320713 3173 dbSNP
rs1431746067 3177 dbSNP
rs549894360 3180 dbSNP
rs1170262050 3182 dbSNP
rs148730028 3183 dbSNP
rs564051952 3184 dbSNP
rs899907159 3191 dbSNP
rs199770008 3196 dbSNP
rs1332582976 3206 dbSNP
rs78054728 3211 dbSNP
rs573424620 3219 dbSNP
rs1003734006 3220 dbSNP
rs1370539401 3222 dbSNP
rs1376622182 3232 dbSNP
rs906683996 3234 dbSNP
rs1300293237 3235 dbSNP
rs1340451255 3237 dbSNP
rs1214546229 3240 dbSNP
rs1005533831 3242 dbSNP
rs887028142 3243 dbSNP
rs1047388913 3251 dbSNP
rs1251768623 3255 dbSNP
rs1444353740 3257 dbSNP
rs1466873767 3259 dbSNP
rs1190058961 3263 dbSNP
rs749474267 3266 dbSNP
rs74929425 3272 dbSNP
rs906382241 3275 dbSNP
rs760806380 3277 dbSNP
rs1420941794 3279 dbSNP
rs1405817653 3284 dbSNP
rs1165766756 3289 dbSNP
rs145697804 3291 dbSNP
rs1460103281 3293 dbSNP
rs546627367 3302 dbSNP
rs1472249725 3309 dbSNP
rs755919709 3313 dbSNP
rs914968479 3325 dbSNP
rs573807830 3326 dbSNP
rs1053778218 3327 dbSNP
rs1053385470 3328 dbSNP
rs1235567484 3336 dbSNP
rs935939094 3340 dbSNP
rs1272019622 3347 dbSNP
rs140165958 3349 dbSNP
rs1212799690 3351 dbSNP
rs1485848487 3352 dbSNP
rs1284499705 3362 dbSNP
rs1446278052 3367 dbSNP
rs537143464 3368 dbSNP
rs577642977 3369 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000379096.5 | 3UTR | UAAAAAAAAAAAAUUUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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