pre-miRNA Information
pre-miRNA hsa-mir-3678   
Genomic Coordinates chr17: 75406069 - 75406162
Description Homo sapiens miR-3678 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3678-3p
Sequence 69| CUGCAGAGUUUGUACGGACCGG |90
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs988363493 1 dbSNP
rs753118178 5 dbSNP
rs1424776090 14 dbSNP
rs1475188526 15 dbSNP
rs1163369708 17 dbSNP
rs1174219930 19 dbSNP
rs915488824 20 dbSNP
rs1273558782 21 dbSNP
rs755095016 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TMEM104   
Synonyms -
Description transmembrane protein 104
Transcript NM_017728   
Expression
Putative miRNA Targets on TMEM104
3'UTR of TMEM104
(miRNA target sites are highlighted)
>TMEM104|NM_017728|3'UTR
   1 TGGCAGGACAGGCAGGTCTAGTGACAGGAGGCATAGGGGCCCCAGCCCCACCCCTCGCCCGCAGAGCCCAGATTTAGTTG
  81 CTCCCAGGTCTTCATGGGGCAGGTGGGACTGTGGCTCTAGGGGAAACCCCCTGTCCAGCTGGGGTTGTTCTCCCCACCCA
 161 CCTTCCACCCAGTCTGCACCTGTCCTCACTCCCCCGGGCAGCTCTCCCACCAGGTCCTTCTGCCTGGGTGACGCGTGGCT
 241 GCTCCCAAGTTCTAAGACTCATTACTGGAATCACACCTCTCCCACATCTTCCAACACGCTTCACCCCCAACCCTACTTCC
 321 AGGGCGGGCTACTCCCTGCACAATGGGAGATGCAGTGCTGGCACTGCCATCATTTGTCCCAGACCCATGCCCCTCCCCTC
 401 TCCTGCCCCATCCTGCGTCCTTGTCTAAGAAACCTCCACTAGCAGCTGCTGCCTCTTCAGAGGCGAATCCCAGGCTGGAA
 481 GTATCCTAGCCAGGTCTGCCTGTGACGGCAGGGCCCACCCTCCCACCAGGCCTGGGAGGCGGTAGGTGCCACCTCAGAGA
 561 GGGCCTGGCTGGCCCCATGACAAGAACAAGAAGTGCTAACTGGTACCAGAGTCCCCAGATAGAGCTGCGAGGGCCCTCGC
 641 TGTGGGCGCGAGCTCCGGAGTAGCAGGCTGGATGGAGCATCCCTTCTACAGGGACACAGCCGCCTGCCAGCTGGGCCTAA
 721 AGTCTGGAGCTTGTCTCTGAAAGGGACCGTCTGCTGCCCTCGCTGCCCCACTGGAGCCCTCAGGGCCTCCTACAGTGCAG
 801 GTGGTCCTACTAGAGGGAAGCCATCCCCACCTGGCACCTCAGCGGCTTGGCAGTGACATGGCAGTGGGAGGGCTCTGAGG
 881 TTCCCACCCTGACAATGGTCAGGCTGCCCGTGCTCCCACTCCAACACTAAAAGCGGCTCCCTTAGGGGCTGAGCGTGGGT
 961 GCTCAGTGTTCACGCTATATCCCTTGGGCAATGTGGGGTTGGATGGGGCCCCCACTTCCATTCCCATGGAAGGAGGCCAG
1041 GTCCCCAGCCACCTCCCACTCAGCCATGCACGCACTTGCTGGGCTGGCCTCCTGGGAAACACAGGTGACTCGAATGAACT
1121 CTGCATTTTCAACGTGCCTTCTACTGCTTCAGGACCTGGGGGTCCCCCTGACCCTCACTGGCTTGCCCCCAGCCCTGGGC
1201 CTGGCCCCACCTGTCCTGGAGCCCAGAGCCCCTGGCCTGGAGCTACCTCTCTGGGGTGGGTCTCAGGCCCCACCCCTCCC
1281 TCTTTTGAGTTCAGTGCCTTGCTCAGCCCCTCCCCTGTATCTCAGCGTCTTCAGACCTCTGACAGAGCGACGATGTAGGG
1361 TCTCCCGGGGCCCAAGGTGGTCTCAGGGTCAGGGGTGGGATTTGCAGGGAACTCGGGGAGCCCACGGGCTGCGCCACCTC
1441 TGCCCTGGCAGCTGAAGCCTGGGAGAGTCCCTGCGTGGTGTAATTGGCCTCAGCCCGCTTTCTCTGTGCCGTCGCACCTC
1521 AGTGTTTCTCATAGCTTGTCCCCACGTGTCACTTTCCATCCACGGGAAAAACAAATGCCCCTTCTCCATCTATCATTGCG
1601 ACTTCCTCCCAGGAGGCCTCTCAGGTTGGGTAGAGCAGGGGCCTGCAGTGGTCAGGCCAAGAGCAAGGAAGACCTGGCTG
1681 CCCCACTGTGGCTGAAAACTCAAAACATCTGGAACTACCCTTCTCCAATTACGTTCCCTCTTGCTTAAAGACAAAGCTAA
1761 TTAAATCATCCTGCCACCCGAGGCTCCAAACCAAATCTTGGACGCAAATTCATTAGCTTCATAAAGCCCAGGTTGATTTA
1841 TGTGACAGTCTGGAACCGCCCAGCCATGGAGTCGGTGGCCGTGTTCCCTGCCCTGGAGGGAACTGGCCAGCAGTGACCAC
1921 ATCGCTGATGCCAAGTGGGGACCCTCACCACTGCCGTTGTCTAGCTGCTTTGCTCCTCAGTGTCCTCCTGCTGTAAGTCA
2001 GATGAGGTCACCTTCCTCTCCATCGATGCCAGGCTTCTGCCGCTGACGGCCAATGGGGCTTGGGGCCAGGGGCAGAGAAC
2081 CCCAACAGCAAGAGAGCCCCAGGTGATGCTGGCTCTCCACGTGCATCCGGCACGTTTCACTGCAGCCATCATCAACTTGG
2161 CAAAGTAGGCAAGCTCAGCTTGTGGTTTCCATTTTGCAGATGGGCCCCCGGGGTCAGTGATGGGAAGAGCAGAAGAGGAT
2241 GCCAGCCCAGCCTGGCCCAGGAGCAGGTGTCGTTGTGGAGGAAAGCTTAAACTCAACAGCCTCTACCCAACATCTGCCAC
2321 CTGCATGGCCCCAGATGCCCCCGGTGCAGGCCAGGTCAAGGTGGGAGTAAACTTTCTTTGCCTCCCTCCCCACAGAAGCA
2401 CCAGACCCACCTGAGCCCCAGAGCCTCATGCCAGCAGCTCCTGGCTGTTCCTCACCTGAGGCTAGAGCAGCAGCTGCCAG
2481 CTTATAGATGGGGCGGATGGCAGGTGATAGACTGGGAAGCACTGCTGGGTGGTGGAGGTGGGCAGTGGCACCATGACGGG
2561 CCCCTAGCCACACAGCTGTCCTCACTACGGGGCAGGGAGCAGCCTCGGCAACAGGCAAAGGCCAGAGTCAGAGTGGTGGG
2641 GAGGACAGGGGCTGCTGCCCCGCTCCTGGAAAGCCACTGCAGAGGGGCAGTGGCTGGCAGTGCCAGGCCTGGGGGAAGTG
2721 GAAGCGTCCTGTCTGGGGGCAGATTCCCAAGCAAGGGTGACCCATGGTTAAGGGCCACTGGAAAGCTGGAGAGAGCTTGG
2801 GATCCCTTCCACCTGGGGCCAATGGTGTTGATTGCAGACTGGAGGGGTAACCTCCGCTGAGGGTCATTATGTGCCAGGCA
2881 TGGCATTGGGTACTTTCTGCATTGGGACCAGGCAGCCGGGCCTGCCATTTGAGGCAGCGAGCCTCCGTGACCTGTCCTCC
2961 CTCATTTGTAAAGTGGGGTAACAGCTATGTCACTGGCCAGTTGTGGGGATTAAAGTGCTGAGCTTAGTGCCCAGCCCAAA
3041 ATGCTCAATAAAGCTATTCAGTGATACCTGTTTCCCACATCACTCACCAGCCATAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggCCA---GGCAUGUUUGAGACGUc 5'
            |||   :|| |::||||||||| 
Target 5' caGGTGACTCGAATGAACTCTGCAt 3'
1102 - 1126 168.00 -17.50
2
miRNA  3' ggCCAGGCAUGUUUGAGACGuc 5'
            || |:| :| | ||||||  
Target 5' acGGGCTGCGCCACCTCTGCcc 3'
1424 - 1445 140.00 -16.20
3
miRNA  3' ggccaggCAUGUUUGAGACGUc 5'
                 ||||   :|||||| 
Target 5' gcattggGTAC--TTTCTGCAt 3'
2883 - 2902 131.00 -12.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30143112 17 COSMIC
COSN31501916 40 COSMIC
COSN30552893 45 COSMIC
COSN30513621 50 COSMIC
COSN29114392 51 COSMIC
COSN30151497 54 COSMIC
COSN30489445 54 COSMIC
COSN21189761 84 COSMIC
COSN19627187 103 COSMIC
COSN5221536 118 COSMIC
COSN20114393 160 COSMIC
COSN21376655 386 COSMIC
COSN9322634 610 COSMIC
COSN24969316 635 COSMIC
COSN20185018 730 COSMIC
COSN22186775 835 COSMIC
COSN29715514 975 COSMIC
COSN31531146 1011 COSMIC
COSN30017302 1037 COSMIC
COSN26679512 1181 COSMIC
COSN15019897 1328 COSMIC
COSN31557628 1342 COSMIC
COSN31518041 1367 COSMIC
COSN31578826 1475 COSMIC
COSN8246179 1511 COSMIC
COSN22474401 1673 COSMIC
COSN6111928 1736 COSMIC
COSN15661338 1924 COSMIC
COSN28880884 2165 COSMIC
COSN26856158 2252 COSMIC
COSN31975456 2282 COSMIC
COSN26856755 2354 COSMIC
COSN26856068 2374 COSMIC
COSN9322635 2889 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs150628921 2 dbSNP
rs1487241184 4 dbSNP
rs766509851 6 dbSNP
rs751960751 8 dbSNP
rs755313944 10 dbSNP
rs1161832256 16 dbSNP
rs1410148761 17 dbSNP
rs912007665 18 dbSNP
rs371230573 19 dbSNP
rs1374068484 22 dbSNP
rs1165706184 33 dbSNP
rs755590759 36 dbSNP
rs1434470330 41 dbSNP
rs777399037 43 dbSNP
rs748743192 46 dbSNP
rs1436829381 47 dbSNP
rs561189444 52 dbSNP
rs1413847085 55 dbSNP
rs1402179266 57 dbSNP
rs114481580 58 dbSNP
rs549990038 61 dbSNP
rs569745717 62 dbSNP
rs532667129 65 dbSNP
rs1374175618 69 dbSNP
rs1478483510 83 dbSNP
rs1443863608 95 dbSNP
rs1197233122 97 dbSNP
rs933371536 101 dbSNP
rs11558036 103 dbSNP
rs1216605713 105 dbSNP
rs1352133153 109 dbSNP
rs1366205257 118 dbSNP
rs1219263646 120 dbSNP
rs908002296 122 dbSNP
rs1272767163 137 dbSNP
rs1401427404 142 dbSNP
rs1340964671 143 dbSNP
rs1297338899 146 dbSNP
rs940841704 147 dbSNP
rs11389066 157 dbSNP
rs200196382 157 dbSNP
rs760615686 157 dbSNP
rs778883740 157 dbSNP
rs397798879 160 dbSNP
rs1198369910 170 dbSNP
rs1171083093 186 dbSNP
rs1478922736 195 dbSNP
rs1045257317 196 dbSNP
rs948321544 197 dbSNP
rs1239672303 200 dbSNP
rs1487598108 200 dbSNP
rs905383905 202 dbSNP
rs1211411838 210 dbSNP
rs1441376163 217 dbSNP
rs1439795718 218 dbSNP
rs565713629 228 dbSNP
rs1182747097 231 dbSNP
rs1246219032 233 dbSNP
rs565799032 234 dbSNP
rs753462691 235 dbSNP
rs371135534 236 dbSNP
rs1003245621 243 dbSNP
rs1447164308 248 dbSNP
rs1009195932 255 dbSNP
rs1022385582 256 dbSNP
rs967983478 263 dbSNP
rs754597875 269 dbSNP
rs371194887 273 dbSNP
rs1424521655 277 dbSNP
rs554498789 285 dbSNP
rs1010734236 286 dbSNP
rs1427159893 296 dbSNP
rs1416368300 298 dbSNP
rs1028092619 299 dbSNP
rs568426237 306 dbSNP
rs963972939 307 dbSNP
rs955234347 310 dbSNP
rs778717267 311 dbSNP
rs1029612592 313 dbSNP
rs375429540 316 dbSNP
rs537337268 321 dbSNP
rs1196343042 322 dbSNP
rs1323328807 323 dbSNP
rs557580847 327 dbSNP
rs1313159957 332 dbSNP
rs150881611 341 dbSNP
rs747983639 344 dbSNP
rs772028935 352 dbSNP
rs920633654 354 dbSNP
rs907951493 355 dbSNP
rs796457393 369 dbSNP
rs1045369860 370 dbSNP
rs926876483 372 dbSNP
rs1330978295 373 dbSNP
rs545123707 377 dbSNP
rs1460654098 385 dbSNP
rs1285793590 388 dbSNP
rs1346669236 393 dbSNP
rs939477188 401 dbSNP
rs767550332 405 dbSNP
rs1056650294 408 dbSNP
rs892180240 417 dbSNP
rs777835467 418 dbSNP
rs71380844 420 dbSNP
rs948297236 422 dbSNP
rs1176466415 423 dbSNP
rs1276731005 426 dbSNP
rs1341842637 446 dbSNP
rs1220474454 454 dbSNP
rs1196663344 458 dbSNP
rs1045718368 466 dbSNP
rs1009764233 479 dbSNP
rs181930425 482 dbSNP
rs1377825136 484 dbSNP
rs1308605004 499 dbSNP
rs938981428 507 dbSNP
rs572143305 508 dbSNP
rs1294519945 515 dbSNP
rs892193892 516 dbSNP
rs1420834852 518 dbSNP
rs541036825 519 dbSNP
rs1480741946 532 dbSNP
rs1192768419 534 dbSNP
rs1434551513 536 dbSNP
rs996704239 541 dbSNP
rs139348047 542 dbSNP
rs1489809332 556 dbSNP
rs899654483 564 dbSNP
rs574722646 569 dbSNP
rs1029973269 570 dbSNP
rs1285402209 571 dbSNP
rs955318434 571 dbSNP
rs543329474 582 dbSNP
rs569961899 588 dbSNP
rs1302306052 601 dbSNP
rs1386397744 603 dbSNP
rs1344096392 608 dbSNP
rs1008824605 614 dbSNP
rs1226558150 615 dbSNP
rs373677321 616 dbSNP
rs185193088 617 dbSNP
rs747004364 619 dbSNP
rs1467089891 626 dbSNP
rs1007975541 630 dbSNP
rs1015879191 632 dbSNP
rs1174994736 634 dbSNP
rs1479242883 637 dbSNP
rs1425519842 639 dbSNP
rs551923052 640 dbSNP
rs769915256 641 dbSNP
rs1365614685 643 dbSNP
rs920725278 648 dbSNP
rs1399934310 649 dbSNP
rs559422618 650 dbSNP
rs1223193181 652 dbSNP
rs548219396 657 dbSNP
rs763179885 658 dbSNP
rs920593982 666 dbSNP
rs1280499629 668 dbSNP
rs1219594815 669 dbSNP
rs568114303 671 dbSNP
rs191080785 673 dbSNP
rs760515795 683 dbSNP
rs1402365383 687 dbSNP
rs980787628 692 dbSNP
rs1301688074 693 dbSNP
rs550977386 698 dbSNP
rs768784225 702 dbSNP
rs764442295 703 dbSNP
rs1371099962 720 dbSNP
rs1248400452 721 dbSNP
rs939590061 723 dbSNP
rs1292597816 729 dbSNP
rs1256969694 736 dbSNP
rs1487969947 742 dbSNP
rs1056626249 749 dbSNP
rs534602117 750 dbSNP
rs1259569438 753 dbSNP
rs1339209983 755 dbSNP
rs987785628 758 dbSNP
rs1247638578 761 dbSNP
rs757374782 762 dbSNP
rs774659564 763 dbSNP
rs1449769754 770 dbSNP
rs571091848 772 dbSNP
rs35266122 777 dbSNP
rs539667798 783 dbSNP
rs1464777292 786 dbSNP
rs1394143297 789 dbSNP
rs568953213 793 dbSNP
rs767926400 796 dbSNP
rs1458352529 798 dbSNP
rs1367785127 802 dbSNP
rs750925079 804 dbSNP
rs1183093137 806 dbSNP
rs996443069 817 dbSNP
rs149653435 822 dbSNP
rs891036043 826 dbSNP
rs375501823 842 dbSNP
rs1437400257 845 dbSNP
rs1039164284 859 dbSNP
rs1008141104 863 dbSNP
rs1385384704 873 dbSNP
rs1291749597 876 dbSNP
rs112825311 879 dbSNP
rs1418559754 880 dbSNP
rs1244381818 888 dbSNP
rs1157385267 889 dbSNP
rs572210571 892 dbSNP
rs1309337428 896 dbSNP
rs750515202 899 dbSNP
rs59142337 901 dbSNP
rs554633290 904 dbSNP
rs1383220005 908 dbSNP
rs1333958837 911 dbSNP
rs961535245 920 dbSNP
rs1387091238 925 dbSNP
rs1389725371 929 dbSNP
rs1161642079 935 dbSNP
rs995365964 936 dbSNP
rs1004089118 940 dbSNP
rs1159255176 952 dbSNP
rs574334971 954 dbSNP
rs1028131183 955 dbSNP
rs765854744 956 dbSNP
rs1452587023 959 dbSNP
rs1268619348 960 dbSNP
rs753308930 965 dbSNP
rs1236934044 968 dbSNP
rs994887661 974 dbSNP
rs1258941985 975 dbSNP
rs369535665 976 dbSNP
rs563454099 978 dbSNP
rs1205601945 981 dbSNP
rs969529022 986 dbSNP
rs1255218996 992 dbSNP
rs373743339 993 dbSNP
rs545604930 994 dbSNP
rs1300996753 996 dbSNP
rs754615428 998 dbSNP
rs1401769396 999 dbSNP
rs960944415 1006 dbSNP
rs559115045 1009 dbSNP
rs554476117 1024 dbSNP
rs1400243551 1027 dbSNP
rs1035206457 1028 dbSNP
rs528612187 1036 dbSNP
rs778395552 1037 dbSNP
rs1429045216 1045 dbSNP
rs1197631075 1053 dbSNP
rs1489575267 1058 dbSNP
rs1264470566 1059 dbSNP
rs548257565 1062 dbSNP
rs960911537 1063 dbSNP
rs562147524 1067 dbSNP
rs945506052 1073 dbSNP
rs1280124208 1076 dbSNP
rs988402095 1079 dbSNP
rs914194607 1085 dbSNP
rs1281174232 1092 dbSNP
rs1220183526 1093 dbSNP
rs1340871257 1095 dbSNP
rs1243345412 1101 dbSNP
rs1269564481 1103 dbSNP
rs1428545573 1104 dbSNP
rs530826395 1110 dbSNP
rs1438595793 1112 dbSNP
rs550925887 1113 dbSNP
rs1364988987 1116 dbSNP
rs979148753 1117 dbSNP
rs1174756983 1121 dbSNP
rs1479037494 1128 dbSNP
rs1424753836 1134 dbSNP
rs1186517411 1135 dbSNP
rs1474707409 1138 dbSNP
rs1454768761 1143 dbSNP
rs1172447340 1158 dbSNP
rs773898584 1163 dbSNP
rs1460611811 1165 dbSNP
rs924992413 1167 dbSNP
rs920982889 1168 dbSNP
rs117172962 1173 dbSNP
rs752450295 1181 dbSNP
rs1318417015 1190 dbSNP
rs1294566000 1192 dbSNP
rs932436429 1194 dbSNP
rs540116566 1200 dbSNP
rs1337684646 1207 dbSNP
rs1286060636 1229 dbSNP
rs1049384256 1230 dbSNP
rs1453406638 1231 dbSNP
rs1382102953 1233 dbSNP
rs547261009 1235 dbSNP
rs7212248 1246 dbSNP
rs777780417 1256 dbSNP
rs890965802 1259 dbSNP
rs939890962 1275 dbSNP
rs1170100796 1276 dbSNP
rs1036907185 1281 dbSNP
rs898436688 1281 dbSNP
rs943958877 1287 dbSNP
rs1037327921 1290 dbSNP
rs1184724922 1298 dbSNP
rs1443522986 1308 dbSNP
rs995234461 1309 dbSNP
rs1027670054 1310 dbSNP
rs534742741 1313 dbSNP
rs905254098 1320 dbSNP
rs554718956 1324 dbSNP
rs1202134150 1327 dbSNP
rs144205631 1328 dbSNP
rs60487483 1333 dbSNP
rs1026828177 1335 dbSNP
rs1358904542 1337 dbSNP
rs62084946 1346 dbSNP
rs556872966 1348 dbSNP
rs1312998701 1349 dbSNP
rs887852124 1350 dbSNP
rs577104650 1352 dbSNP
rs1351950136 1353 dbSNP
rs1164851049 1363 dbSNP
rs545690782 1367 dbSNP
rs757156604 1368 dbSNP
rs1159862056 1369 dbSNP
rs147764419 1373 dbSNP
rs749359531 1376 dbSNP
rs1175097509 1391 dbSNP
rs1489366067 1394 dbSNP
rs1427775277 1395 dbSNP
rs1481651407 1396 dbSNP
rs1357122630 1399 dbSNP
rs1021598749 1400 dbSNP
rs1289719840 1405 dbSNP
rs1399969501 1416 dbSNP
rs1317567591 1421 dbSNP
rs966988416 1426 dbSNP
rs572688687 1427 dbSNP
rs1370248542 1433 dbSNP
rs372987094 1434 dbSNP
rs953893297 1440 dbSNP
rs1364211903 1446 dbSNP
rs925494820 1449 dbSNP
rs1300052706 1450 dbSNP
rs768820676 1464 dbSNP
rs1386255716 1467 dbSNP
rs774543034 1470 dbSNP
rs912327384 1473 dbSNP
rs943679192 1475 dbSNP
rs1036703094 1476 dbSNP
rs897031331 1478 dbSNP
rs373770428 1481 dbSNP
rs1306649237 1483 dbSNP
rs1048254037 1485 dbSNP
rs905717525 1490 dbSNP
rs1486271650 1494 dbSNP
rs931266325 1497 dbSNP
rs1049494760 1498 dbSNP
rs1002275164 1500 dbSNP
rs905202683 1501 dbSNP
rs1284361054 1505 dbSNP
rs1223230334 1511 dbSNP
rs562064045 1512 dbSNP
rs148433519 1514 dbSNP
rs1383692710 1515 dbSNP
rs1013963159 1523 dbSNP
rs1467267304 1529 dbSNP
rs182915971 1533 dbSNP
rs1020960327 1535 dbSNP
rs537419894 1543 dbSNP
rs1479355556 1546 dbSNP
rs748434349 1547 dbSNP
rs1427787829 1553 dbSNP
rs979734011 1556 dbSNP
rs188365971 1564 dbSNP
rs773577466 1565 dbSNP
rs1427092412 1568 dbSNP
rs1203239405 1578 dbSNP
rs761193571 1579 dbSNP
rs953735497 1581 dbSNP
rs986454276 1582 dbSNP
rs912300239 1584 dbSNP
rs985614078 1593 dbSNP
rs1292867313 1594 dbSNP
rs1058731 1595 dbSNP
rs912276254 1600 dbSNP
rs1373840916 1601 dbSNP
rs142554248 1603 dbSNP
rs972517736 1609 dbSNP
rs919775048 1632 dbSNP
rs1402210973 1637 dbSNP
rs1301412079 1651 dbSNP
rs367654893 1652 dbSNP
rs965167374 1657 dbSNP
rs1371218615 1666 dbSNP
rs1189507424 1668 dbSNP
rs931190456 1669 dbSNP
rs1367456226 1672 dbSNP
rs1243820829 1681 dbSNP
rs377530455 1684 dbSNP
rs1253114389 1687 dbSNP
rs1196710886 1708 dbSNP
rs1339111082 1717 dbSNP
rs972803743 1729 dbSNP
rs1248795772 1731 dbSNP
rs1359602611 1734 dbSNP
rs1303678222 1736 dbSNP
rs567135652 1737 dbSNP
rs1450017157 1751 dbSNP
rs1378604054 1758 dbSNP
rs3803783 1760 dbSNP
rs1390654578 1761 dbSNP
rs1394029329 1762 dbSNP
rs1212552861 1763 dbSNP
rs1425209629 1764 dbSNP
rs931203525 1766 dbSNP
rs191551943 1771 dbSNP
rs375313113 1776 dbSNP
rs557001142 1778 dbSNP
rs116528577 1781 dbSNP
rs1248840125 1792 dbSNP
rs1225382935 1793 dbSNP
rs150990812 1804 dbSNP
rs896547159 1805 dbSNP
rs1243071260 1806 dbSNP
rs1352185404 1819 dbSNP
rs1279813095 1827 dbSNP
rs1056990562 1828 dbSNP
rs1009656754 1845 dbSNP
rs1304672277 1849 dbSNP
rs1485126931 1858 dbSNP
rs1042915635 1859 dbSNP
rs904013036 1871 dbSNP
rs1422861490 1872 dbSNP
rs866505124 1874 dbSNP
rs62084947 1875 dbSNP
rs1469764215 1878 dbSNP
rs182748848 1880 dbSNP
rs1362426207 1881 dbSNP
rs546326248 1882 dbSNP
rs1481062962 1884 dbSNP
rs954323200 1887 dbSNP
rs764902277 1892 dbSNP
rs1019259397 1896 dbSNP
rs1000835374 1901 dbSNP
rs1387224882 1903 dbSNP
rs1032533444 1904 dbSNP
rs954299676 1907 dbSNP
rs570408023 1919 dbSNP
rs539384999 1923 dbSNP
rs1164174605 1924 dbSNP
rs1284994960 1925 dbSNP
rs1223849059 1938 dbSNP
rs1006980994 1949 dbSNP
rs972465567 1953 dbSNP
rs1432789057 1954 dbSNP
rs1019776604 1957 dbSNP
rs1318984193 1958 dbSNP
rs1400374173 1965 dbSNP
rs1383001807 1970 dbSNP
rs1178823597 1975 dbSNP
rs752397055 1976 dbSNP
rs965500225 1979 dbSNP
rs1429024518 1981 dbSNP
rs1344510419 1983 dbSNP
rs1197960654 1986 dbSNP
rs552865654 1994 dbSNP
rs1242199992 2012 dbSNP
rs918232157 2025 dbSNP
rs980368738 2026 dbSNP
rs1264676169 2028 dbSNP
rs1388520515 2029 dbSNP
rs1260956305 2034 dbSNP
rs927200791 2034 dbSNP
rs1216258861 2039 dbSNP
rs879124810 2040 dbSNP
rs938596736 2042 dbSNP
rs140828121 2043 dbSNP
rs917930390 2044 dbSNP
rs187396282 2048 dbSNP
rs555499204 2049 dbSNP
rs1361056809 2050 dbSNP
rs1246047679 2051 dbSNP
rs1282885589 2054 dbSNP
rs1436873348 2061 dbSNP
rs1315698251 2062 dbSNP
rs1174317689 2065 dbSNP
rs1412164029 2066 dbSNP
rs937248919 2069 dbSNP
rs1056978042 2071 dbSNP
rs1167825107 2075 dbSNP
rs575694700 2092 dbSNP
rs544670537 2094 dbSNP
rs917128433 2101 dbSNP
rs1474166535 2110 dbSNP
rs1244428040 2113 dbSNP
rs1183833656 2116 dbSNP
rs1460546123 2121 dbSNP
rs949487655 2122 dbSNP
rs936842172 2128 dbSNP
rs3826320 2129 dbSNP
rs902615613 2130 dbSNP
rs573225716 2134 dbSNP
rs1340203753 2135 dbSNP
rs1000782857 2138 dbSNP
rs1245167327 2140 dbSNP
rs1053724093 2143 dbSNP
rs1445364344 2145 dbSNP
rs1008437555 2150 dbSNP
rs1301485472 2152 dbSNP
rs1286249926 2156 dbSNP
rs1328177394 2157 dbSNP
rs1019207112 2162 dbSNP
rs1228641843 2173 dbSNP
rs896819761 2176 dbSNP
rs774121070 2180 dbSNP
rs994279643 2183 dbSNP
rs1163621713 2186 dbSNP
rs1220277454 2187 dbSNP
rs1443652786 2190 dbSNP
rs540600825 2200 dbSNP
rs1483677650 2204 dbSNP
rs890030716 2206 dbSNP
rs1007137808 2207 dbSNP
rs1250107636 2208 dbSNP
rs1020182045 2210 dbSNP
rs745676903 2211 dbSNP
rs1416308921 2213 dbSNP
rs1171484871 2233 dbSNP
rs994754780 2251 dbSNP
rs1403745718 2252 dbSNP
rs368486823 2262 dbSNP
rs952443885 2263 dbSNP
rs983753092 2268 dbSNP
rs764028259 2272 dbSNP
rs763927026 2273 dbSNP
rs1399383559 2275 dbSNP
rs1436221851 2276 dbSNP
rs1313162214 2277 dbSNP
rs1246745898 2278 dbSNP
rs1431584681 2279 dbSNP
rs1306147791 2282 dbSNP
rs760634395 2283 dbSNP
rs1310902434 2286 dbSNP
rs1448558906 2287 dbSNP
rs763927858 2292 dbSNP
rs773411522 2296 dbSNP
rs952581017 2297 dbSNP
rs1376525213 2299 dbSNP
rs1227328577 2301 dbSNP
rs979935636 2304 dbSNP
rs1407830418 2307 dbSNP
rs1034185944 2309 dbSNP
rs1304250683 2313 dbSNP
rs1160921412 2317 dbSNP
rs1343634155 2317 dbSNP
rs1034050079 2322 dbSNP
rs1419232253 2325 dbSNP
rs992735553 2326 dbSNP
rs1179683954 2327 dbSNP
rs1273172364 2328 dbSNP
rs1336283548 2330 dbSNP
rs751424154 2333 dbSNP
rs1211267538 2338 dbSNP
rs1239515395 2339 dbSNP
rs992774541 2343 dbSNP
rs560768089 2344 dbSNP
rs978526834 2347 dbSNP
rs1345883291 2350 dbSNP
rs1317696469 2351 dbSNP
rs1236551927 2355 dbSNP
rs1451461240 2356 dbSNP
rs925363308 2361 dbSNP
rs1166781418 2364 dbSNP
rs766673758 2365 dbSNP
rs1281392845 2366 dbSNP
rs1482842606 2369 dbSNP
rs1414903271 2370 dbSNP
rs936770697 2377 dbSNP
rs1357168304 2378 dbSNP
rs1446879990 2386 dbSNP
rs1049884130 2389 dbSNP
rs889961246 2390 dbSNP
rs1194446537 2391 dbSNP
rs1366895270 2392 dbSNP
rs192386590 2399 dbSNP
rs1225628726 2400 dbSNP
rs183332539 2407 dbSNP
rs1339318675 2408 dbSNP
rs1201475029 2409 dbSNP
rs1041281663 2414 dbSNP
rs113877012 2417 dbSNP
rs1441086319 2419 dbSNP
rs1203408878 2420 dbSNP
rs1248942332 2427 dbSNP
rs759927821 2432 dbSNP
rs924017974 2439 dbSNP
rs569432928 2447 dbSNP
rs753046199 2448 dbSNP
rs1376404840 2456 dbSNP
rs888162261 2457 dbSNP
rs530549518 2461 dbSNP
rs1422940688 2462 dbSNP
rs1053714096 2463 dbSNP
rs550637824 2465 dbSNP
rs1174036006 2466 dbSNP
rs1267796573 2470 dbSNP
rs1207045052 2479 dbSNP
rs889810044 2484 dbSNP
rs1326183199 2485 dbSNP
rs1001697234 2493 dbSNP
rs770477409 2495 dbSNP
rs780962151 2496 dbSNP
rs1041269091 2500 dbSNP
rs374045602 2505 dbSNP
rs1382335748 2508 dbSNP
rs1034133594 2509 dbSNP
rs1360630105 2509 dbSNP
rs901438795 2514 dbSNP
rs1352330484 2517 dbSNP
rs994306271 2535 dbSNP
rs570180141 2539 dbSNP
rs888188922 2541 dbSNP
rs1005344505 2542 dbSNP
rs1171034923 2546 dbSNP
rs1429256709 2547 dbSNP
rs1247486072 2551 dbSNP
rs1014119879 2555 dbSNP
rs1020200547 2556 dbSNP
rs3744207 2558 dbSNP
rs745868167 2559 dbSNP
rs1033995991 2561 dbSNP
rs1253643871 2564 dbSNP
rs1228771859 2567 dbSNP
rs796577673 2569 dbSNP
rs1294676434 2570 dbSNP
rs1285587613 2577 dbSNP
rs978095948 2579 dbSNP
rs1324644551 2581 dbSNP
rs1383020390 2588 dbSNP
rs1394126644 2589 dbSNP
rs755007853 2589 dbSNP
rs562391724 2590 dbSNP
rs1298746587 2601 dbSNP
rs1271136482 2602 dbSNP
rs372478109 2608 dbSNP
rs116080305 2613 dbSNP
rs1446706307 2615 dbSNP
rs1386134494 2621 dbSNP
rs967707318 2622 dbSNP
rs944194046 2625 dbSNP
rs566441189 2626 dbSNP
rs1196888427 2627 dbSNP
rs925820162 2629 dbSNP
rs535354578 2630 dbSNP
rs930221481 2633 dbSNP
rs1359512881 2634 dbSNP
rs1283298045 2637 dbSNP
rs1048023700 2639 dbSNP
rs778967615 2641 dbSNP
rs1307370867 2644 dbSNP
rs1390771503 2645 dbSNP
rs1001247445 2647 dbSNP
rs1304842471 2647 dbSNP
rs1368587778 2647 dbSNP
rs911317945 2650 dbSNP
rs555300474 2653 dbSNP
rs1416922828 2654 dbSNP
rs895597089 2656 dbSNP
rs1365923593 2658 dbSNP
rs1182937789 2659 dbSNP
rs1041443963 2660 dbSNP
rs1014067785 2662 dbSNP
rs575379285 2663 dbSNP
rs772301612 2666 dbSNP
rs1047224040 2675 dbSNP
rs888639947 2677 dbSNP
rs778352516 2681 dbSNP
rs1403651476 2692 dbSNP
rs967282580 2694 dbSNP
rs1261124755 2698 dbSNP
rs1227600738 2699 dbSNP
rs1332102277 2707 dbSNP
rs1405475280 2710 dbSNP
rs1005738250 2719 dbSNP
rs1032965515 2726 dbSNP
rs1034077944 2727 dbSNP
rs367879320 2731 dbSNP
rs1341775220 2734 dbSNP
rs537609681 2738 dbSNP
rs1013887488 2753 dbSNP
rs1024427625 2756 dbSNP
rs371390240 2761 dbSNP
rs558253565 2762 dbSNP
rs999204458 2765 dbSNP
rs1481017300 2771 dbSNP
rs1357354850 2773 dbSNP
rs1245648112 2776 dbSNP
rs1032795186 2777 dbSNP
rs1196078440 2779 dbSNP
rs1448191191 2784 dbSNP
rs1220257849 2786 dbSNP
rs957171714 2795 dbSNP
rs1207696076 2801 dbSNP
rs985943962 2809 dbSNP
rs911265090 2813 dbSNP
rs578107870 2814 dbSNP
rs1049117855 2815 dbSNP
rs531093613 2823 dbSNP
rs1434468635 2826 dbSNP
rs1328263524 2827 dbSNP
rs1168769498 2828 dbSNP
rs922632848 2833 dbSNP
rs930225006 2835 dbSNP
rs1047791191 2838 dbSNP
rs1178970671 2839 dbSNP
rs745363978 2843 dbSNP
rs773524027 2846 dbSNP
rs910154828 2851 dbSNP
rs540637613 2852 dbSNP
rs747302246 2856 dbSNP
rs187551204 2857 dbSNP
rs895544519 2872 dbSNP
rs771372546 2874 dbSNP
rs1463222587 2882 dbSNP
rs1055981136 2885 dbSNP
rs1041540043 2894 dbSNP
rs903009093 2906 dbSNP
rs1276494563 2910 dbSNP
rs757859529 2918 dbSNP
rs1316689362 2919 dbSNP
rs894221800 2926 dbSNP
rs1000073831 2928 dbSNP
rs1033325938 2938 dbSNP
rs574430449 2939 dbSNP
rs543285522 2940 dbSNP
rs1449277875 2944 dbSNP
rs1314626918 2946 dbSNP
rs1045387294 2947 dbSNP
rs562976999 2948 dbSNP
rs1412066879 2951 dbSNP
rs551208121 2958 dbSNP
rs1032865525 2967 dbSNP
rs957286049 2977 dbSNP
rs1007311445 2978 dbSNP
rs1017425478 2982 dbSNP
rs1386761764 2988 dbSNP
rs764777214 2992 dbSNP
rs775155904 2993 dbSNP
rs1235458653 2994 dbSNP
rs1206555916 2998 dbSNP
rs1438276959 3012 dbSNP
rs1018231189 3013 dbSNP
rs1204576933 3016 dbSNP
rs531950167 3024 dbSNP
rs1340111013 3028 dbSNP
rs977264597 3029 dbSNP
rs922614479 3055 dbSNP
rs1317503937 3057 dbSNP
rs1229096519 3062 dbSNP
rs1378906271 3063 dbSNP
rs965397222 3066 dbSNP
rs1045546483 3067 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ggccagGCAUGUUUGAGAcguc 5'
                |||:|   :|||    
Target 5' uuucaaCGUGC--CUUCU---- 3'
3 - 18
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM4903829
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_a
Location of target site NM_017728 | 3UTR | CUCGAAUGAACUCUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903830
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_b
Location of target site NM_017728 | 3UTR | CUCGAAUGAACUCUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_017728 | 3UTR | CGAAUGAACUCUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_017728 | 3UTR | UCGAAUGAACUCUGCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000335464.5 | 3UTR | AUUUUCAACGUGCCUUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
LIHC 0.526 0.07 0.367 0.17 9 Click to see details
LUSC 0.6 0.2 0.200 0.4 4 Click to see details
HNSC -0.274 0.21 -0.155 0.32 11 Click to see details
HNSC -0.274 0.21 -0.155 0.32 11 Click to see details
HNSC -0.274 0.21 -0.155 0.32 11 Click to see details
HNSC -0.274 0.21 -0.155 0.32 11 Click to see details
HNSC -0.274 0.21 -0.155 0.32 11 Click to see details
HNSC -0.274 0.21 -0.155 0.32 11 Click to see details
HNSC -0.274 0.21 -0.155 0.32 11 Click to see details
HNSC -0.274 0.21 -0.155 0.32 11 Click to see details
HNSC -0.274 0.21 -0.155 0.32 11 Click to see details
HNSC -0.274 0.21 -0.155 0.32 11 Click to see details
86 hsa-miR-3678-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074327 TNRC6A trinucleotide repeat containing 6A 2 10
MIRT107705 CLTA clathrin light chain A 2 2
MIRT114113 AGO1 argonaute 1, RISC catalytic component 2 2
MIRT155293 IFNAR2 interferon alpha and beta receptor subunit 2 2 4
MIRT159171 NRBP1 nuclear receptor binding protein 1 2 2
MIRT185795 ZNF678 zinc finger protein 678 2 2
MIRT282672 SYNM synemin 2 2
MIRT294386 ZNF264 zinc finger protein 264 2 2
MIRT295818 CHMP4B charged multivesicular body protein 4B 2 2
MIRT332777 CAPRIN1 cell cycle associated protein 1 2 4
MIRT334112 PPP6R3 protein phosphatase 6 regulatory subunit 3 2 2
MIRT340971 IPO5 importin 5 2 2
MIRT354679 CDV3 CDV3 homolog 2 2
MIRT366662 PLP2 proteolipid protein 2 2 2
MIRT404272 PLEKHA8 pleckstrin homology domain containing A8 2 2
MIRT447536 RNF165 ring finger protein 165 2 2
MIRT449139 UQCRB ubiquinol-cytochrome c reductase binding protein 2 2
MIRT451301 LGALS3BP galectin 3 binding protein 2 2
MIRT451488 FOPNL FGFR1OP N-terminal like 2 2
MIRT455198 GNL1 G protein nucleolar 1 (putative) 2 2
MIRT459215 MRPS21 mitochondrial ribosomal protein S21 2 2
MIRT461764 MPDU1 mannose-P-dolichol utilization defect 1 2 2
MIRT463273 ZFX zinc finger protein, X-linked 2 2
MIRT464862 UBB ubiquitin B 2 8
MIRT464950 TWIST1 twist family bHLH transcription factor 1 2 2
MIRT467378 SON SON DNA binding protein 2 4
MIRT469282 RHOA ras homolog family member A 2 2
MIRT470293 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT470639 POM121C POM121 transmembrane nucleoporin C 2 2
MIRT477163 FABP3 fatty acid binding protein 3 2 2
MIRT477686 EFHD2 EF-hand domain family member D2 2 2
MIRT479725 CCNF cyclin F 2 2
MIRT481726 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT485673 CCDC64 BICD family like cargo adaptor 1 2 2
MIRT498280 PADI2 peptidyl arginine deiminase 2 2 2
MIRT499921 GPX8 glutathione peroxidase 8 (putative) 2 2
MIRT503616 SLC25A36 solute carrier family 25 member 36 2 4
MIRT506927 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT507348 FAM129A family with sequence similarity 129 member A 2 6
MIRT508265 DYNLL2 dynein light chain LC8-type 2 2 4
MIRT508284 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT509353 COPS8 COP9 signalosome subunit 8 2 2
MIRT510892 RAB1A RAB1A, member RAS oncogene family 2 4
MIRT511882 GAS1 growth arrest specific 1 2 6
MIRT511990 E2F1 E2F transcription factor 1 2 4
MIRT512239 ARPP19 cAMP regulated phosphoprotein 19 2 4
MIRT512392 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 4
MIRT514086 EPS15L1 epidermal growth factor receptor pathway substrate 15 like 1 2 6
MIRT514358 UBBP4 ubiquitin B pseudogene 4 2 6
MIRT523149 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT525511 FSIP2 fibrous sheath interacting protein 2 2 2
MIRT526333 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT529962 ZNF71 zinc finger protein 71 2 2
MIRT530337 GABRB3 gamma-aminobutyric acid type A receptor beta3 subunit 2 2
MIRT530884 PHOX2A paired like homeobox 2a 2 2
MIRT533097 YOD1 YOD1 deubiquitinase 2 2
MIRT533250 VCAM1 vascular cell adhesion molecule 1 2 2
MIRT534786 RAB8B RAB8B, member RAS oncogene family 2 2
MIRT537917 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT547799 JARID2 jumonji and AT-rich interaction domain containing 2 2 2
MIRT548714 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT555509 PMEPA1 prostate transmembrane protein, androgen induced 1 2 2
MIRT555984 NFYB nuclear transcription factor Y subunit beta 2 2
MIRT557942 FAM222B family with sequence similarity 222 member B 2 2
MIRT560830 ZNF786 zinc finger protein 786 2 2
MIRT562720 ZNF714 zinc finger protein 714 2 2
MIRT565337 TMEM104 transmembrane protein 104 2 2
MIRT614453 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT639474 SLC6A4 solute carrier family 6 member 4 2 2
MIRT644056 IQCE IQ motif containing E 2 2
MIRT651652 VWA1 von Willebrand factor A domain containing 1 2 2
MIRT651866 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT653490 SLC43A2 solute carrier family 43 member 2 2 2
MIRT657039 KCNJ6 potassium voltage-gated channel subfamily J member 6 2 2
MIRT657985 GAN gigaxonin 2 2
MIRT672117 ATP6V0A2 ATPase H+ transporting V0 subunit a2 2 2
MIRT683583 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT688689 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT695375 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT696351 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT700614 PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 2 2
MIRT703512 FKBP15 FK506 binding protein 15 2 2
MIRT705051 C5orf15 chromosome 5 open reading frame 15 2 2
MIRT705180 BTG1 BTG anti-proliferation factor 1 2 2
MIRT709409 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT721053 DCC DCC netrin 1 receptor 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3678-3p Platinum 23939 resistant tissue
hsa-miR-3678-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3678-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-3678-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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