miRTarBase - #MIRT565356


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pre-miRNA Information
pre-miRNA hsa-mir-640   
Genomic Coordinates chr19: 19435063 - 19435158
Synonyms MIRN640, hsa-mir-640, MIR640
Description Homo sapiens miR-640 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-640
Sequence 61| AUGAUCCAGGAACCUGCCUCU |81
Evidence Experimental
Experiments RT-PCR
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30153378 1 COSMIC
COSN23015356 12 COSMIC
COSN30513185 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs111726405 1 dbSNP
rs765622881 2 dbSNP
rs1249744889 6 dbSNP
rs752995186 12 dbSNP
rs758746736 13 dbSNP
rs918887970 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TMCC1   
Synonyms -
Description transmembrane and coiled-coil domain family 1
Transcript NM_001128224   
Other Transcripts NM_001017395 , NM_015008   
Expression
Putative miRNA Targets on TMCC1
3'UTR of TMCC1
(miRNA target sites are highlighted)		 
>TMCC1|NM_001128224|3'UTR
   1 TGCTGGCACAGAAGGCATTGTTCCCTACCCTCTGGCGAGTGCATGCAGCAGAGAGTTAGACAGCAACTTACCTACTCTGA
  81 AGTTTTCTACAACAAAAAAAGAGTTGAGTGAATCTGTTTACATTTAGAATAATGTTTTTTTCTTCAAGAGACGCAATTGC
 161 AATAGTATTTTTTAGATTTTATCCAAGAAGTTTTTTGGGCGAAAATCTTGGATCATTTTTATGTAGCATGATTTTCCTTG
 241 GGATGCAAATCTTAAAACAGTCCTTTAATATGAACCAACAATCTGGAGCACACCGAAGGGCAATCTAAATTGTGGCTTGA
 321 AGGACTGCACTAAAACCCACTAAAAAGATGCGAAAACCTGATGAGGGCAAACCAGTTAAACCTAACACCCTGCCTTGTCT
 401 GGGCTCATCACCTCTCCCTATCCCAGACTAACTTTACTGTGAAATCCTACCACATTCCATGTCTGAATTTTTGGATTCGG
 481 GGTGGATTTTCGTTGTCCGTGGAAGAACACATGGATCTCTCTGGCTTTCTCACCCAAGTTGGCCACTTACGCTAATCCTG
 561 GAAGTATGATCACTTTTGAACCTGCCCCTTAACCTTGACGAGGATACAAAAGTGAAAGCATCATCCCCCAAAGGATCACT
 641 GCACAGTCCTACTACAGTATTTTTAAGTAGCCCTCTAAATACTTAATTTTAAGCAAAATCCCTTGGCCGCACTTTTAAGG
 721 TTTTTTTATATGTGTATAGTTACCAACCTAAAAATAAAAAATCCGAACAGCATACTTGAAGAATGTAATACTCAAACTCT
 801 CAGTGCTTCCTTATGGTTTCTAATAGGATTTTTTATTATTGTTATTATTATTATTGGGTTTTTTTGGACAGGGTTGGGAG
 881 GGTCTTTTATTTTTCCTTTGAAATAAAGAAGTGATGTTTTTAAATGAAGAAATGTGTGGATATTTAAGTGTGCTGCTCCC
 961 TCTTGTCTTGAAACAGTTTGAGTAAGAAAGTCTTGCTGTAAATGCTGCCCTCTGCCGCCTTTGTTTTGAGATGCAGTTTA
1041 AACTCCCTCTGGCTGCTGCTGCTGCTTTTTGGTGTCCCGACATACCTACGCCCCCGTTTTATGGGTTTGGCTTAGTTGAA
1121 GAGGAAAGGGTTGTGCAAGGAGAGCAGGAGGCTGTTTCCAAAAACCAGTGTAGTAGGATAGGGATTTTTTTTTTTTTTTT
1201 TTGCCCCAAGAAAACGTTCACCCAGTGATCTTGGGCTGGGGTTGTCTTTAGGAAAAGTTGAGACTATAAGAGTCATAAAT
1281 AAGTCCTTGTGTTTCCTTAATTTATTTTGTTAACACCCCTAATTACAACCAAAGTGATGATGTGGAGTCTTCTGTCTTCA
1361 TTTTGGCCCCAGCATTCTTAATTTCAAAGCTTTATTCTGTCTGCCTAAGAGAATCAACCAAAGGTGATTCTCCTAAAGAG
1441 CAGTGAAGGAAATGTCAGGTTAGCAGGACCCAAGTTTTGGGTGTGAAATGTTGCCAGCTTCCTATAATGTAAACGGACTT
1521 GTTAACCTAACCTAATTATGCTCAGTGGACTTCTATAGATGGTTTTGAAAAATGAACTGAGCTGCCTTCCCCCGTCGCAT
1601 AACCAGTTCCATCATCCTGGTGGAACTTGAACATTTAGAGTTTATCTAGAGAGCTTGGTTAATCTTTCCATATTATTTGT
1681 AGTATTGGTCACAAATGCTGTTCCCTCTTAGCCTCATTCTGTGCAACCAAGTGCATATAAGATGCCCTGAAAAGAGTAAC
1761 AAAGTATGCTTTGCCTGTTTCCACTTACCAGGAAATTCCTTCAGAACTAGATTAGCATTGCCCTGCCTGTCTGAAAGGAC
1841 AGTTTACCTAATGGTGCCAGCCTCCTTTTGCTTTGGCAAGCTGGATTTCTCAGAGCCAGCATGTTGTTTCCATAACTACT
1921 TTGATATTTTAACTCAGGTACTCCAGTCTTCACCCCAACCTCAGCTGATTGTAGTACACCTGCTAGCTCTGTTGCCCCCT
2001 CAAAACTGCACCCAGAGCAGGGCCACAAGGGTGCTTTTTTTCTTTAAAAAAAAAAAAATTAGAACCAATTCATGTTCATG
2081 CCAAAAACAAATTGTCCCCAAGCCTATATGTATTAAAATGTTAACTTTGCCTAAAAATATTGCAGTGACTTTTTAGGCAG
2161 GAGTGCCAAAGGACACTATGAACTTTTTGAACTGACAGTTTCTCCTAACTTTCTGCTTTAGCGTAATTGCTCAGAGTAGA
2241 GAGCCCCCACAAAGTTATTTAAAAGATGCCCTAGCAGCAATCCACCAGTTTTTCTAAGCTAGAACCTTTGAGTCCCCCAA
2321 ACTGCCTGAAGACTTAAGTTTTGTGGGCACTGGAAGTCACTTTGATAGATGGATTGAAACTGTTCCTATTTGCCCTGGGA
2401 CGGTTTCTATCTATCAAAGGAAGGTTTTCACCTGTAGAAAGCCCCCTGCCTCCAGCCAAATAGTCCCATGCTGACTTTCT
2481 ATCTTCCTTTCTCAAACTGTCTTAGGAAGGACCTTCAGTGCAGATCAGGTGCAGTAATGGCTTTCTTGTCCCTTAATTAT
2561 TCACCAGACCCAGAAGTTGTACGCATTTAATGCTGTTTGTAACCATGCATCTGTTTTCATTCTTTGCTGTACCTTTTGCT
2641 GCCCATCCTGTTACTTTTGAGTTTCTTTCATTGTGGTTGTTCTTGGGTTCTTTTGTCTTGTCAGAGCTCTTCTATAACCT
2721 CGCTCTAATGGCTTAACAGTTGTTCTGGGTGGAAACGTCCCCTCATTTGAATGCTCCTCTAAAAAAAAAAGAAAAGAAAA
2801 CTGTATTCATTCCCTTTAAAATGAAACATTCCTGGTTTATTTGTCCATGCCTCTAGCCTGGGTGAGTGAAGCTGGCTGTG
2881 TTGGCCTGGGTGATTGTTCAGGTTGTAGAATGCGCATTTTACATTGTTTATGATAATTGAAGGGTACTTCTGTCTGCTCC
2961 AATTTCCATTCCTTGGTATACTCAGTATGTCCTAGTAAGGAAGGCTTTCCACTCTACTGGCTCCTTAAGAAGCAAAAGTA
3041 GGTTAAATTTTATACTTCACTGACTAGGGTCTTCTCTCTCCCCTGTTCTGAATGGAGTAAAAGTCTGATGCCAAGACAAA
3121 TATTGGGAGCGAGCCTTCCTCACTAGCCATGTCCAAATAATGAGCGTATTTTCATGTGGTCTTCACTGCATTTGGTTTTG
3201 TTTCTGATTTCATGTTCCTTTGAGGTACAGTCAGATGAAAATGCTGAGTTCTGAGAGAGTTCCAATGAGGAGCTGCCTTT
3281 CAGCTTTGGAAAATATGCAACTAAAACAAAACCAAACATTATTGTAATCTGACACAGGCAAAATTATGGTTCCCACACCC
3361 CAACCCCAAATGAAACCTGGGATTTTGAATGTGGCTCTAAGAGTTAACATTGCTGTCTGTATGTCGTGTATGCTAGGTGA
3441 TATCCTCAGTAGGGATTGACTACTAGACTGTGTGTTTTATCAAAGTGTGTAAGAATAAAAACTCACTTGCACGAATTGAA
3521 ACGTAAAGAAATGACACTTGTGAACGTGTGAACGTTAACACTGTAGTTGATAGATCTTAAGCTGCTAATTGTTGAGAGAG
3601 ATTTAAATTTATGTTCTGTCTGGTCGCTGCAGATTCTCAGCAGCACTTTTACTGTATATAGAAATTGAAATAAAGACCTC
3681 AGCTATTAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucUCCG-UCCAAGGACCUAGUa 5'
            :||| |   ||:||||||| 
Target 5' ttGGGCGAAAATCTTGGATCAt 3'
 195 - 216 155.00 -19.50
2 
miRNA  3' ucuccguccaaGGACCUAGua 5'
                     | ||||||  
Target 5' gtggaagaacaCATGGATCtc 3'
 499 - 519 122.00 -8.60
3 
miRNA  3' ucuccguccaaggaCCUAGUa 5'
                        |||||| 
Target 5' catcatcccccaaaGGATCAc 3'
 619 - 639 120.00 -8.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31562897 16 COSMIC
COSN31561473 37 COSMIC
COSN30581547 38 COSMIC
COSN20074815 106 COSMIC
COSN31518529 126 COSMIC
COSN28836323 134 COSMIC
COSN30761125 135 COSMIC
COSN30160944 214 COSMIC
COSN32065643 279 COSMIC
COSN30175541 347 COSMIC
COSN31488838 351 COSMIC
COSN30173401 478 COSMIC
COSN31591669 499 COSMIC
COSN23416859 551 COSMIC
COSN32065817 551 COSMIC
COSN26643954 682 COSMIC
COSN9236512 861 COSMIC
COSN31547421 884 COSMIC
COSN65166 895 COSMIC
COSN20099048 1185 COSMIC
COSN20099051 1185 COSMIC
COSN28780501 1215 COSMIC
COSN31583372 1354 COSMIC
COSN28821004 1569 COSMIC
COSN30174090 1838 COSMIC
COSN26551394 1897 COSMIC
COSN29463481 1941 COSMIC
COSN15931445 2045 COSMIC
COSN27373782 2046 COSMIC
COSN31602549 2058 COSMIC
COSN19253475 2094 COSMIC
COSN29466925 2157 COSMIC
COSN29322842 2358 COSMIC
COSN24536366 2401 COSMIC
COSN20099042 2780 COSMIC
COSN9236511 2896 COSMIC
COSN26071621 3100 COSMIC
COSN6749485 3219 COSMIC
COSN31962147 3335 COSMIC
COSN6571427 3504 COSMIC
COSN26466323 3510 COSMIC
COSN1913224 3658 COSMIC
COSN5520045 3685 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1299329346 2 dbSNP
rs749824597 5 dbSNP
rs1451151992 6 dbSNP
rs1245986086 7 dbSNP
rs1185673234 8 dbSNP
rs760531469 13 dbSNP
rs773082114 14 dbSNP
rs150674121 15 dbSNP
rs1345806441 16 dbSNP
rs944411729 17 dbSNP
rs1279924467 31 dbSNP
rs377119101 33 dbSNP
rs768854934 35 dbSNP
rs373153174 36 dbSNP
rs780331451 37 dbSNP
rs370998089 39 dbSNP
rs1305098863 44 dbSNP
rs1007972906 53 dbSNP
rs1299246876 62 dbSNP
rs890687912 66 dbSNP
rs1175811694 78 dbSNP
rs572481218 89 dbSNP
rs946466051 98 dbSNP
rs1322064617 101 dbSNP
rs1387336770 102 dbSNP
rs898018743 103 dbSNP
rs1036778816 112 dbSNP
rs1365070413 129 dbSNP
rs1460222923 134 dbSNP
rs1417539887 142 dbSNP
rs778237847 152 dbSNP
rs1226553838 164 dbSNP
rs1267455895 176 dbSNP
rs1465256993 181 dbSNP
rs1209442045 190 dbSNP
rs915382096 194 dbSNP
rs1243856132 195 dbSNP
rs1166333690 200 dbSNP
rs991014017 201 dbSNP
rs1426359680 209 dbSNP
rs959630882 213 dbSNP
rs1157334940 228 dbSNP
rs1411881698 242 dbSNP
rs928244025 245 dbSNP
rs554307174 247 dbSNP
rs879094777 261 dbSNP
rs982127461 264 dbSNP
rs961640511 268 dbSNP
rs888205290 270 dbSNP
rs1293733498 271 dbSNP
rs1015550928 275 dbSNP
rs1407795808 294 dbSNP
rs1371465767 302 dbSNP
rs1192557029 303 dbSNP
rs1329794313 306 dbSNP
rs1230142092 309 dbSNP
rs1286516159 310 dbSNP
rs1319972611 311 dbSNP
rs1005569558 317 dbSNP
rs946226691 319 dbSNP
rs914718856 336 dbSNP
rs952811941 342 dbSNP
rs58340382 343 dbSNP
rs1212006786 346 dbSNP
rs1180487344 347 dbSNP
rs754133541 347 dbSNP
rs756552658 349 dbSNP
rs551655168 351 dbSNP
rs578238186 352 dbSNP
rs6798636 353 dbSNP
rs141955653 358 dbSNP
rs766839587 361 dbSNP
rs1404263314 364 dbSNP
rs1164813745 375 dbSNP
rs996437097 383 dbSNP
rs900416487 392 dbSNP
rs1427362484 393 dbSNP
rs1040658437 403 dbSNP
rs1008816085 416 dbSNP
rs1267969663 421 dbSNP
rs902154843 424 dbSNP
rs1350883530 426 dbSNP
rs1326448571 437 dbSNP
rs1042087800 438 dbSNP
rs946435081 445 dbSNP
rs945194717 451 dbSNP
rs1378288178 460 dbSNP
rs1227841358 476 dbSNP
rs1290612403 478 dbSNP
rs753064669 478 dbSNP
rs1299401185 479 dbSNP
rs1438216308 480 dbSNP
rs1394262658 491 dbSNP
rs1055295635 492 dbSNP
rs938212764 498 dbSNP
rs538579764 499 dbSNP
rs1181956279 506 dbSNP
rs879331134 507 dbSNP
rs1427502119 510 dbSNP
rs1475796467 511 dbSNP
rs910643774 513 dbSNP
rs758838198 519 dbSNP
rs1192030939 527 dbSNP
rs961669236 529 dbSNP
rs954901119 536 dbSNP
rs908522564 538 dbSNP
rs984116653 548 dbSNP
rs1448651950 550 dbSNP
rs187814938 550 dbSNP
rs1252211343 551 dbSNP
rs758036734 551 dbSNP
rs1351342730 552 dbSNP
rs1222029770 557 dbSNP
rs962196552 558 dbSNP
rs1453053005 562 dbSNP
rs760802948 578 dbSNP
rs1195111918 587 dbSNP
rs1197926277 593 dbSNP
rs1276873153 599 dbSNP
rs1442411634 600 dbSNP
rs1028405306 607 dbSNP
rs1244489679 619 dbSNP
rs1276126020 621 dbSNP
rs6785588 627 dbSNP
rs996018792 628 dbSNP
rs1016406821 633 dbSNP
rs1390438519 637 dbSNP
rs1170654084 640 dbSNP
rs964859760 641 dbSNP
rs753371164 644 dbSNP
rs1415009500 651 dbSNP
rs1231693971 657 dbSNP
rs1006396245 658 dbSNP
rs555098686 660 dbSNP
rs1386299434 661 dbSNP
rs1433023552 663 dbSNP
rs1018795957 673 dbSNP
rs763578088 675 dbSNP
rs888180255 678 dbSNP
rs1229873673 700 dbSNP
rs1009199781 702 dbSNP
rs902458581 708 dbSNP
rs371859965 709 dbSNP
rs1001864936 711 dbSNP
rs1334299468 718 dbSNP
rs1010614937 721 dbSNP
rs34050914 721 dbSNP
rs1046296977 727 dbSNP
rs112815555 728 dbSNP
rs533872684 728 dbSNP
rs893552125 730 dbSNP
rs913831214 733 dbSNP
rs1053524374 738 dbSNP
rs1376905697 740 dbSNP
rs1478245504 758 dbSNP
rs1178272182 761 dbSNP
rs566462400 764 dbSNP
rs937777890 765 dbSNP
rs1158590126 771 dbSNP
rs551135512 772 dbSNP
rs1384179146 780 dbSNP
rs1372543876 783 dbSNP
rs986642224 790 dbSNP
rs1171832892 800 dbSNP
rs1405969611 804 dbSNP
rs1285512405 810 dbSNP
rs1327718285 812 dbSNP
rs1046573700 814 dbSNP
rs1268256568 816 dbSNP
rs1352183064 824 dbSNP
rs1207500675 825 dbSNP
rs940265304 826 dbSNP
rs1451751321 835 dbSNP
rs908823897 837 dbSNP
rs923299146 841 dbSNP
rs1249327694 844 dbSNP
rs1472264625 846 dbSNP
rs764722724 846 dbSNP
rs1364511451 853 dbSNP
rs984085531 854 dbSNP
rs1161494934 856 dbSNP
rs1390297623 856 dbSNP
rs1425473455 859 dbSNP
rs1193080674 866 dbSNP
rs1305402144 866 dbSNP
rs1409800687 868 dbSNP
rs1308364235 871 dbSNP
rs931349239 872 dbSNP
rs972067004 873 dbSNP
rs1241984813 878 dbSNP
rs921263738 885 dbSNP
rs1264287532 896 dbSNP
rs1359779292 906 dbSNP
rs1230928847 908 dbSNP
rs532967130 908 dbSNP
rs761373928 915 dbSNP
rs760343610 916 dbSNP
rs1182575444 917 dbSNP
rs1483332756 920 dbSNP
rs3208356 929 dbSNP
rs148576912 934 dbSNP
rs1185527870 935 dbSNP
rs1208103685 940 dbSNP
rs1367953682 953 dbSNP
rs1445512155 958 dbSNP
rs775543273 965 dbSNP
rs1280626672 968 dbSNP
rs1016544208 970 dbSNP
rs1019179015 973 dbSNP
rs959157924 976 dbSNP
rs1033417233 982 dbSNP
rs1394783191 984 dbSNP
rs1002403663 986 dbSNP
rs144844494 986 dbSNP
rs1247785355 989 dbSNP
rs1294980706 990 dbSNP
rs1349036786 992 dbSNP
rs760463987 992 dbSNP
rs966614244 1001 dbSNP
rs1279317627 1004 dbSNP
rs1020916875 1016 dbSNP
rs1010835885 1017 dbSNP
rs1482269308 1020 dbSNP
rs753344729 1023 dbSNP
rs529201018 1035 dbSNP
rs1352866747 1040 dbSNP
rs1311524021 1043 dbSNP
rs1414265654 1044 dbSNP
rs1046014337 1047 dbSNP
rs1376098843 1060 dbSNP
rs1388554794 1065 dbSNP
rs1449028331 1066 dbSNP
rs1009192575 1067 dbSNP
rs752498447 1067 dbSNP
rs1053656609 1076 dbSNP
rs552339501 1078 dbSNP
rs1407423114 1079 dbSNP
rs767369980 1083 dbSNP
rs561318592 1089 dbSNP
rs1364029523 1090 dbSNP
rs1002333448 1095 dbSNP
rs542671050 1096 dbSNP
rs1399149024 1101 dbSNP
rs1263711229 1102 dbSNP
rs1325513167 1107 dbSNP
rs1205659870 1111 dbSNP
rs888984933 1116 dbSNP
rs1405589681 1121 dbSNP
rs1050524674 1127 dbSNP
rs764133854 1130 dbSNP
rs1264362266 1139 dbSNP
rs1431828072 1142 dbSNP
rs1157775091 1150 dbSNP
rs1430618550 1154 dbSNP
rs1471210090 1168 dbSNP
rs906312919 1170 dbSNP
rs1472757008 1185 dbSNP
rs531542776 1189 dbSNP
rs1290287826 1191 dbSNP
rs940233474 1194 dbSNP
rs1185647831 1199 dbSNP
rs11298293 1203 dbSNP
rs1216532712 1203 dbSNP
rs1386011818 1203 dbSNP
rs1491357307 1203 dbSNP
rs61584336 1203 dbSNP
rs747811970 1203 dbSNP
rs754505502 1203 dbSNP
rs772972831 1203 dbSNP
rs869040050 1203 dbSNP
rs869250763 1203 dbSNP
rs879052630 1203 dbSNP
rs148168668 1204 dbSNP
rs1491277222 1204 dbSNP
rs1485076487 1205 dbSNP
rs1237521793 1211 dbSNP
rs1253629309 1215 dbSNP
rs759457810 1216 dbSNP
rs972035867 1217 dbSNP
rs887354664 1230 dbSNP
rs1400812939 1234 dbSNP
rs1048594816 1235 dbSNP
rs1284093421 1246 dbSNP
rs990816560 1250 dbSNP
rs1160564562 1266 dbSNP
rs931581495 1280 dbSNP
rs1457082250 1287 dbSNP
rs921233342 1290 dbSNP
rs1229404211 1291 dbSNP
rs1347124699 1304 dbSNP
rs1407970038 1305 dbSNP
rs1287676330 1309 dbSNP
rs1331603818 1309 dbSNP
rs909451656 1312 dbSNP
rs527757229 1334 dbSNP
rs958900265 1345 dbSNP
rs944100529 1351 dbSNP
rs1034966455 1370 dbSNP
rs1233173584 1378 dbSNP
rs1203405137 1385 dbSNP
rs1232812223 1389 dbSNP
rs1470765370 1417 dbSNP
rs769836183 1428 dbSNP
rs1410984916 1430 dbSNP
rs1443668446 1431 dbSNP
rs970847073 1452 dbSNP
rs775452602 1455 dbSNP
rs1304643809 1464 dbSNP
rs1327865263 1474 dbSNP
rs966499113 1480 dbSNP
rs1024700807 1481 dbSNP
rs1020802390 1497 dbSNP
rs1009172626 1498 dbSNP
rs183508140 1504 dbSNP
rs1377025170 1507 dbSNP
rs1344835164 1510 dbSNP
rs767317828 1514 dbSNP
rs1319159771 1515 dbSNP
rs1226667240 1525 dbSNP
rs1272724178 1535 dbSNP
rs759713136 1544 dbSNP
rs1033751338 1556 dbSNP
rs1001902319 1557 dbSNP
rs906274083 1560 dbSNP
rs1024762504 1563 dbSNP
rs1183629600 1566 dbSNP
rs774625660 1567 dbSNP
rs1162755865 1578 dbSNP
rs2625944 1592 dbSNP
rs2625945 1594 dbSNP
rs113592949 1595 dbSNP
rs386665786 1595 dbSNP
rs1183092615 1596 dbSNP
rs1332092689 1597 dbSNP
rs1405203677 1611 dbSNP
rs1452009759 1611 dbSNP
rs1337404381 1613 dbSNP
rs1474104306 1617 dbSNP
rs1385333377 1620 dbSNP
rs1433161374 1622 dbSNP
rs1270017756 1624 dbSNP
rs1241172716 1627 dbSNP
rs933181484 1629 dbSNP
rs1208917691 1631 dbSNP
rs1277155008 1635 dbSNP
rs931550297 1638 dbSNP
rs773207083 1646 dbSNP
rs1244436184 1651 dbSNP
rs190927756 1653 dbSNP
rs1271631390 1655 dbSNP
rs142950707 1658 dbSNP
rs912560621 1664 dbSNP
rs1041784351 1665 dbSNP
rs139085755 1682 dbSNP
rs1315361288 1698 dbSNP
rs1212894530 1717 dbSNP
rs1470242460 1723 dbSNP
rs770316718 1730 dbSNP
rs1408345516 1731 dbSNP
rs913709534 1736 dbSNP
rs1361298626 1755 dbSNP
rs989342766 1756 dbSNP
rs1433333974 1760 dbSNP
rs1437508426 1767 dbSNP
rs555310005 1780 dbSNP
rs1264503680 1788 dbSNP
rs1326436690 1804 dbSNP
rs1323629425 1809 dbSNP
rs1203989103 1817 dbSNP
rs926602053 1818 dbSNP
rs1284561211 1820 dbSNP
rs1448312439 1821 dbSNP
rs1196550127 1827 dbSNP
rs1460918931 1829 dbSNP
rs927573702 1838 dbSNP
rs748604005 1854 dbSNP
rs970387357 1861 dbSNP
rs1201469335 1892 dbSNP
rs971614876 1897 dbSNP
rs1024668752 1901 dbSNP
rs1157997244 1914 dbSNP
rs1426244578 1916 dbSNP
rs1402655318 1919 dbSNP
rs533577422 1923 dbSNP
rs1365312098 1924 dbSNP
rs956373155 1936 dbSNP
rs1285778932 1938 dbSNP
rs1031930322 1941 dbSNP
rs566517264 1941 dbSNP
rs1279617381 1944 dbSNP
rs1352480929 1954 dbSNP
rs1207667573 1955 dbSNP
rs866587755 1958 dbSNP
rs1000545118 1974 dbSNP
rs781578017 1987 dbSNP
rs1224385455 1992 dbSNP
rs1249532483 1994 dbSNP
rs889002950 1999 dbSNP
rs1181259315 2009 dbSNP
rs755366321 2017 dbSNP
rs1364457417 2026 dbSNP
rs1471305833 2029 dbSNP
rs951160222 2031 dbSNP
rs1365139846 2039 dbSNP
rs1028929058 2040 dbSNP
rs867657029 2041 dbSNP
rs1395037658 2042 dbSNP
rs1251591607 2045 dbSNP
rs71620059 2046 dbSNP
rs995667256 2053 dbSNP
rs901706212 2058 dbSNP
rs1313960228 2059 dbSNP
rs1323605259 2059 dbSNP
rs201303349 2059 dbSNP
rs397751928 2059 dbSNP
rs900081622 2059 dbSNP
rs1005009025 2061 dbSNP
rs887863283 2065 dbSNP
rs1039917487 2066 dbSNP
rs1196277481 2067 dbSNP
rs1049496507 2068 dbSNP
rs1008903852 2072 dbSNP
rs1181789487 2084 dbSNP
rs891099154 2089 dbSNP
rs1384852646 2091 dbSNP
rs1445405252 2094 dbSNP
rs1041758232 2099 dbSNP
rs1488977075 2101 dbSNP
rs946095124 2103 dbSNP
rs1461965699 2105 dbSNP
rs1202988235 2106 dbSNP
rs1307032057 2109 dbSNP
rs1169017441 2110 dbSNP
rs1399205987 2116 dbSNP
rs1449838078 2118 dbSNP
rs937368912 2129 dbSNP
rs1383150876 2131 dbSNP
rs745567374 2132 dbSNP
rs557418839 2140 dbSNP
rs1293230659 2145 dbSNP
rs575033001 2149 dbSNP
rs936556278 2151 dbSNP
rs146532138 2160 dbSNP
rs1321253629 2172 dbSNP
rs568688024 2175 dbSNP
rs562895479 2178 dbSNP
rs1242601760 2180 dbSNP
rs1461967148 2189 dbSNP
rs1302870117 2209 dbSNP
rs1183794475 2211 dbSNP
rs917566323 2216 dbSNP
rs913443491 2222 dbSNP
rs529151958 2223 dbSNP
rs1194257047 2230 dbSNP
rs1375296656 2240 dbSNP
rs1175174546 2243 dbSNP
rs982443526 2270 dbSNP
rs951128073 2286 dbSNP
rs1026732216 2287 dbSNP
rs35529336 2294 dbSNP
rs763652611 2305 dbSNP
rs956423642 2306 dbSNP
rs925069852 2307 dbSNP
rs1353472383 2320 dbSNP
rs186159604 2333 dbSNP
rs1343627834 2338 dbSNP
rs979484352 2345 dbSNP
rs1262641244 2348 dbSNP
rs995667931 2350 dbSNP
rs1324397498 2356 dbSNP
rs964211325 2369 dbSNP
rs1431028782 2374 dbSNP
rs1392891130 2375 dbSNP
rs1172575352 2386 dbSNP
rs867123235 2388 dbSNP
rs1199306421 2398 dbSNP
rs1008456226 2401 dbSNP
rs1481150060 2402 dbSNP
rs1156233976 2404 dbSNP
rs776853101 2406 dbSNP
rs1029312221 2409 dbSNP
rs756166384 2413 dbSNP
rs965864937 2416 dbSNP
rs747864443 2425 dbSNP
rs1363457932 2426 dbSNP
rs891395314 2428 dbSNP
rs1404055315 2441 dbSNP
rs1283884575 2442 dbSNP
rs1014725035 2453 dbSNP
rs1004724568 2461 dbSNP
rs372226555 2481 dbSNP
rs1010274420 2482 dbSNP
rs1316620549 2486 dbSNP
rs1252716109 2487 dbSNP
rs1288667923 2491 dbSNP
rs1049161492 2503 dbSNP
rs368384639 2512 dbSNP
rs1270240122 2516 dbSNP
rs1489721261 2547 dbSNP
rs1175034150 2564 dbSNP
rs1345746579 2571 dbSNP
rs1406606099 2577 dbSNP
rs752646353 2582 dbSNP
rs549121783 2583 dbSNP
rs1382960019 2585 dbSNP
rs1312603639 2588 dbSNP
rs1423771173 2590 dbSNP
rs1303471145 2591 dbSNP
rs1367435037 2610 dbSNP
rs1303113792 2636 dbSNP
rs527695619 2638 dbSNP
rs1349800326 2640 dbSNP
rs1046403740 2645 dbSNP
rs904994602 2650 dbSNP
rs913495744 2654 dbSNP
rs1045328787 2655 dbSNP
rs544318702 2663 dbSNP
rs1373053965 2675 dbSNP
rs949320868 2676 dbSNP
rs917868788 2685 dbSNP
rs759358825 2687 dbSNP
rs1171677453 2690 dbSNP
rs1292946418 2695 dbSNP
rs1453906000 2703 dbSNP
rs1203006296 2704 dbSNP
rs773958502 2722 dbSNP
rs919602107 2723 dbSNP
rs181472429 2726 dbSNP
rs979233927 2727 dbSNP
rs766626711 2730 dbSNP
rs1164045043 2732 dbSNP
rs1418797285 2735 dbSNP
rs1018425937 2738 dbSNP
rs953154718 2744 dbSNP
rs987403621 2747 dbSNP
rs375422975 2756 dbSNP
rs1020586508 2757 dbSNP
rs1380935063 2769 dbSNP
rs1452188098 2773 dbSNP
rs1010493855 2776 dbSNP
rs1358932882 2778 dbSNP
rs397754891 2781 dbSNP
rs77779604 2781 dbSNP
rs965915863 2787 dbSNP
rs533495462 2788 dbSNP
rs1221233920 2789 dbSNP
rs1259113633 2790 dbSNP
rs1460626495 2791 dbSNP
rs200760425 2791 dbSNP
rs66523428 2791 dbSNP
rs1236626250 2795 dbSNP
rs1467111853 2796 dbSNP
rs1328165141 2797 dbSNP
rs1004693287 2799 dbSNP
rs1001601244 2801 dbSNP
rs1403963006 2801 dbSNP
rs747322307 2802 dbSNP
rs1028148996 2803 dbSNP
rs905973627 2805 dbSNP
rs1429073708 2808 dbSNP
rs1332914249 2809 dbSNP
rs763121382 2811 dbSNP
rs1220969062 2818 dbSNP
rs1260760212 2823 dbSNP
rs949284198 2827 dbSNP
rs1286699920 2831 dbSNP
rs1457067632 2832 dbSNP
rs1203705961 2837 dbSNP
rs1389794462 2838 dbSNP
rs773301069 2843 dbSNP
rs563059460 2845 dbSNP
rs1214886336 2856 dbSNP
rs1474502266 2867 dbSNP
rs544836543 2869 dbSNP
rs892023889 2870 dbSNP
rs1305100585 2871 dbSNP
rs929908631 2878 dbSNP
rs1428461117 2883 dbSNP
rs1480151766 2886 dbSNP
rs1259940590 2889 dbSNP
rs574249476 2893 dbSNP
rs1204731914 2901 dbSNP
rs919569243 2902 dbSNP
rs1464303634 2908 dbSNP
rs143932069 2913 dbSNP
rs540189125 2914 dbSNP
rs1345360878 2917 dbSNP
rs1233358900 2923 dbSNP
rs748720531 2925 dbSNP
rs931709814 2928 dbSNP
rs1222822583 2929 dbSNP
rs1210577823 2930 dbSNP
rs777111119 2943 dbSNP
rs768988527 2946 dbSNP
rs191434547 2949 dbSNP
rs986983931 2952 dbSNP
rs1490488155 2955 dbSNP
rs955484160 2978 dbSNP
rs1379413688 2981 dbSNP
rs780244698 2985 dbSNP
rs756961109 2993 dbSNP
rs1020470296 3010 dbSNP
rs138808545 3015 dbSNP
rs1293039059 3023 dbSNP
rs983403680 3028 dbSNP
rs1433867865 3031 dbSNP
rs957625226 3034 dbSNP
rs951971011 3040 dbSNP
rs1033004391 3059 dbSNP
rs1001978266 3065 dbSNP
rs1333457293 3068 dbSNP
rs1059241 3070 dbSNP
rs1322960116 3071 dbSNP
rs1309532433 3074 dbSNP
rs1355331962 3085 dbSNP
rs905946195 3097 dbSNP
rs970140235 3102 dbSNP
rs539129816 3117 dbSNP
rs1360123086 3122 dbSNP
rs1024362670 3130 dbSNP
rs1014191005 3131 dbSNP
rs1014301958 3135 dbSNP
rs1436185345 3141 dbSNP
rs1390658517 3142 dbSNP
rs891826343 3143 dbSNP
rs1164289520 3146 dbSNP
rs1441765615 3149 dbSNP
rs575008931 3155 dbSNP
rs1459536681 3165 dbSNP
rs748929941 3166 dbSNP
rs1384974496 3194 dbSNP
rs1458912152 3196 dbSNP
rs896296359 3198 dbSNP
rs1046899224 3208 dbSNP
rs777461664 3209 dbSNP
rs1031876413 3212 dbSNP
rs1394877667 3226 dbSNP
rs1390325033 3228 dbSNP
rs116999910 3230 dbSNP
rs1378733764 3236 dbSNP
rs1174568914 3238 dbSNP
rs1000443414 3258 dbSNP
rs1289090768 3259 dbSNP
rs1246662220 3270 dbSNP
rs1249550945 3272 dbSNP
rs1338605575 3278 dbSNP
rs772610127 3287 dbSNP
rs1258791687 3290 dbSNP
rs1210320165 3292 dbSNP
rs2811470 3300 dbSNP
rs1249093546 3309 dbSNP
rs932824690 3315 dbSNP
rs1424793872 3322 dbSNP
rs1189977642 3325 dbSNP
rs1227292424 3336 dbSNP
rs1461912500 3343 dbSNP
rs1170816031 3353 dbSNP
rs1136553 3361 dbSNP
rs577566198 3364 dbSNP
rs944339595 3369 dbSNP
rs907582294 3370 dbSNP
rs1330842660 3375 dbSNP
rs1325854316 3397 dbSNP
rs1324825412 3403 dbSNP
rs1219136640 3404 dbSNP
rs1278976340 3414 dbSNP
rs1320126101 3415 dbSNP
rs1201814332 3417 dbSNP
rs1255638942 3424 dbSNP
rs1483692404 3425 dbSNP
rs534945887 3426 dbSNP
rs1260045489 3428 dbSNP
rs1394493239 3435 dbSNP
rs1477807998 3438 dbSNP
rs933739774 3439 dbSNP
rs1426359031 3440 dbSNP
rs756738648 3444 dbSNP
rs1479172168 3455 dbSNP
rs566867291 3462 dbSNP
rs930545742 3466 dbSNP
rs1467257705 3470 dbSNP
rs186527048 3472 dbSNP
rs7432460 3473 dbSNP
rs1430412818 3476 dbSNP
rs533423517 3484 dbSNP
rs1392272490 3488 dbSNP
rs1300000315 3489 dbSNP
rs1343495091 3506 dbSNP
rs1418262218 3511 dbSNP
rs979937536 3512 dbSNP
rs1313036393 3513 dbSNP
rs957603941 3522 dbSNP
rs574817485 3523 dbSNP
rs992906815 3532 dbSNP
rs1217717341 3535 dbSNP
rs1265990274 3538 dbSNP
rs980384549 3546 dbSNP
rs1425221606 3548 dbSNP
rs534308733 3553 dbSNP
rs1246083308 3565 dbSNP
rs970430650 3565 dbSNP
rs1199240748 3567 dbSNP
rs1420088825 3569 dbSNP
rs956037539 3575 dbSNP
rs1031593251 3576 dbSNP
rs1404221346 3583 dbSNP
rs1293062786 3611 dbSNP
rs1000611695 3619 dbSNP
rs181267382 3622 dbSNP
rs189307112 3623 dbSNP
rs1305135025 3625 dbSNP
rs1203988467 3626 dbSNP
rs1241402948 3628 dbSNP
rs1288599507 3637 dbSNP
rs868123003 3643 dbSNP
rs1342500101 3646 dbSNP
rs1276121019 3657 dbSNP
rs1231482232 3665 dbSNP
rs150133548 3670 dbSNP
rs1344867546 3682 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000432054.2 | 3UTR | AUCAUUUUUAUGUAGCAUGAUUUUCCUUGGGAUGCAAAUCUUAAAACAGUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer 0.533 3.7e-3 0.451 1.3e-2 24 Click to see details
GSE28260 Renal cortex and medulla 0.597 1.6e-2 0.512 3.7e-2 13 Click to see details
GSE17306 Multiple myeloma 0.249 4.2e-2 0.321 1.2e-2 49 Click to see details
GSE32688 Pancreatic cancer -0.225 1.1e-1 -0.313 4.1e-2 32 Click to see details
GSE38226 Liver fibrosis 0.251 1.4e-1 0.156 2.5e-1 21 Click to see details
GSE21849 B cell lymphoma -0.206 1.4e-1 0.158 2.1e-1 29 Click to see details
GSE19783 ER+ ER+ breast cancer -0.199 2.0e-1 -0.179 2.3e-1 20 Click to see details
GSE19350 CNS germ cell tumors -0.222 2.4e-1 0.280 1.9e-1 12 Click to see details
GSE19783 ER- ER- breast cancer -0.068 2.8e-1 -0.034 3.8e-1 79 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.139 2.8e-1 -0.122 3.0e-1 20 Click to see details
GSE27834 Pluripotent stem cells 0.146 2.9e-1 0.224 2.0e-1 16 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.095 3.3e-1 -0.032 4.4e-1 25 Click to see details
GSE14794 Lymphoblastoid cells 0.046 3.3e-1 0.084 2.2e-1 90 Click to see details
GSE19536 Breast cancer -0.039 3.5e-1 0.009 4.6e-1 100 Click to see details
GSE26953 Aortic valvular endothelial cells -0.075 3.6e-1 -0.138 2.6e-1 24 Click to see details
GSE17498 Multiple myeloma 0.052 3.7e-1 0.038 4.1e-1 40 Click to see details
GSE21687 Ependynoma primary tumors -0.035 3.9e-1 -0.007 4.8e-1 64 Click to see details
GSE42095 Differentiated embryonic stem cells -0.024 4.6e-1 0.000 5.0e-1 23 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.015 4.7e-1 0.085 3.4e-1 25 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.015 4.7e-1 0.085 3.4e-1 25 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
194 hsa-miR-640 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT097121 TNPO1 transportin 1 2 2
MIRT115090 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 4
MIRT204603 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 8
MIRT204634 MOB4 MOB family member 4, phocein 2 8
MIRT344451 MTRNR2L1 MT-RNR2-like 1 2 2
MIRT405772 EIF5 eukaryotic translation initiation factor 5 2 2
MIRT445876 SENP6 SUMO1/sentrin specific peptidase 6 2 2
MIRT497418 FAM46A family with sequence similarity 46 member A 2 2
MIRT504394 HMX2 H6 family homeobox 2 2 4
MIRT504691 SLCO2B1 solute carrier organic anion transporter family member 2B1 2 8
MIRT512386 MTRNR2L3 MT-RNR2-like 3 2 6
MIRT513003 MAN1A2 mannosidase alpha class 1A member 2 2 2
MIRT513084 USP9X ubiquitin specific peptidase 9, X-linked 2 2
MIRT519122 ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) 2 2
MIRT523836 F2RL1 F2R like trypsin receptor 1 2 2
MIRT565356 TMCC1 transmembrane and coiled-coil domain family 1 2 2
MIRT575895 Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT576894 Poteg POTE ankyrin domain family, member G 2 2
MIRT613780 RPS6 ribosomal protein S6 2 2
MIRT613934 POLR3A RNA polymerase III subunit A 2 2
MIRT614348 LOH12CR1 BLOC-1 related complex subunit 5 2 2
MIRT614534 NOA1 nitric oxide associated 1 2 2
MIRT617019 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT618247 MANEAL mannosidase endo-alpha like 2 2
MIRT619051 TTC4 tetratricopeptide repeat domain 4 2 2
MIRT619442 ZNF517 zinc finger protein 517 2 2
MIRT619723 FPR2 formyl peptide receptor 2 2 2
MIRT620179 TRIM72 tripartite motif containing 72 2 2
MIRT620370 ANKRD62 ankyrin repeat domain 62 2 2
MIRT621263 RTN2 reticulon 2 2 2
MIRT621463 APOH apolipoprotein H 2 2
MIRT621571 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT621683 TSPYL1 TSPY like 1 2 2
MIRT622866 PDE7A phosphodiesterase 7A 2 2
MIRT624669 ARHGEF39 Rho guanine nucleotide exchange factor 39 2 2
MIRT625607 ZNF84 zinc finger protein 84 2 2
MIRT626111 IL23R interleukin 23 receptor 2 2
MIRT628380 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT628553 MELK maternal embryonic leucine zipper kinase 2 2
MIRT628671 C2orf72 chromosome 2 open reading frame 72 2 2
MIRT628747 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT628776 TMEM154 transmembrane protein 154 2 2
MIRT628918 ZNF430 zinc finger protein 430 2 2
MIRT629174 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT629209 C12orf66 chromosome 12 open reading frame 66 2 2
MIRT629267 SLC5A8 solute carrier family 5 member 8 2 2
MIRT629498 AS3MT arsenite methyltransferase 2 2
MIRT629665 USP1 ubiquitin specific peptidase 1 2 2
MIRT629760 STK25 serine/threonine kinase 25 2 2
MIRT630899 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT631105 SLC15A2 solute carrier family 15 member 2 2 2
MIRT631112 ATCAY ATCAY, caytaxin 2 2
MIRT631450 DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding) 2 2
MIRT631505 FFAR4 free fatty acid receptor 4 2 2
MIRT631580 ITGAL integrin subunit alpha L 2 2
MIRT631836 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT632342 SWSAP1 SWIM-type zinc finger 7 associated protein 1 2 2
MIRT633214 ZNF584 zinc finger protein 584 2 2
MIRT633223 ZNF43 zinc finger protein 43 2 2
MIRT633480 ARIH2OS ariadne RBR E3 ubiquitin protein ligase 2 opposite strand 2 2
MIRT633511 LRRC27 leucine rich repeat containing 27 2 2
MIRT633615 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT633652 SLC28A1 solute carrier family 28 member 1 2 2
MIRT633677 ZNF576 zinc finger protein 576 2 2
MIRT634196 TMOD2 tropomodulin 2 2 4
MIRT634388 PLSCR1 phospholipid scramblase 1 2 2
MIRT635817 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT635962 TTC31 tetratricopeptide repeat domain 31 2 2
MIRT636114 YPEL1 yippee like 1 2 2
MIRT636164 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT636768 CLUAP1 clusterin associated protein 1 2 2
MIRT637092 CXorf23 BCLAF1 and THRAP3 family member 3 2 2
MIRT637316 FAM9B family with sequence similarity 9 member B 2 2
MIRT637540 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT637628 ZNF431 zinc finger protein 431 2 2
MIRT637826 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT637945 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT637968 IRF1 interferon regulatory factor 1 2 2
MIRT638321 RNF11 ring finger protein 11 2 2
MIRT638386 RAB11FIP1 RAB11 family interacting protein 1 2 2
MIRT639244 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT642608 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT642793 SLC1A5 solute carrier family 1 member 5 2 2
MIRT643847 LACTB lactamase beta 2 4
MIRT644705 ZNF321P zinc finger protein 321, pseudogene 2 2
MIRT645148 DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease 2 3
MIRT646671 CCDC69 coiled-coil domain containing 69 2 2
MIRT647780 ASB8 ankyrin repeat and SOCS box containing 8 2 2
MIRT648554 WDR92 WD repeat domain 92 2 2
MIRT648990 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT649099 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT650141 ZNF426 zinc finger protein 426 2 2
MIRT650791 GSR glutathione-disulfide reductase 2 2
MIRT654967 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT655099 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT655516 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 2 2
MIRT656289 METTL14 methyltransferase like 14 2 2
MIRT656497 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT657074 JPH2 junctophilin 2 2 2
MIRT657314 HOOK3 hook microtubule tethering protein 3 2 2
MIRT657419 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 4
MIRT659032 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT659535 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT661532 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT662029 FUT2 fucosyltransferase 2 2 2
MIRT663206 DARS2 aspartyl-tRNA synthetase 2, mitochondrial 2 2
MIRT663357 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT663557 CCR6 C-C motif chemokine receptor 6 2 2
MIRT663650 POLM DNA polymerase mu 2 2
MIRT663694 ABHD17B abhydrolase domain containing 17B 2 2
MIRT664370 CYB5A cytochrome b5 type A 2 2
MIRT664783 LIAS lipoic acid synthetase 2 4
MIRT665561 TXNL1 thioredoxin like 1 2 2
MIRT665950 TAOK1 TAO kinase 1 2 2
MIRT667338 MSANTD3 Myb/SANT DNA binding domain containing 3 2 2
MIRT667804 ITIH5 inter-alpha-trypsin inhibitor heavy chain family member 5 2 2
MIRT668804 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT669470 ARPC2 actin related protein 2/3 complex subunit 2 2 2
MIRT669599 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT669806 STOML1 stomatin like 1 2 2
MIRT669944 FBXL2 F-box and leucine rich repeat protein 2 2 2
MIRT670292 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670381 EMP2 epithelial membrane protein 2 2 2
MIRT670481 DCUN1D2 defective in cullin neddylation 1 domain containing 2 2 2
MIRT670531 KIF1C kinesin family member 1C 2 4
MIRT670565 GLTP glycolipid transfer protein 2 2
MIRT670603 NPHP1 nephrocystin 1 2 2
MIRT670880 CYTIP cytohesin 1 interacting protein 2 2
MIRT670931 LIPG lipase G, endothelial type 2 2
MIRT671261 MTRNR2L5 MT-RNR2-like 5 2 2
MIRT671794 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT671897 GBP4 guanylate binding protein 4 2 2
MIRT672000 SLC35F6 solute carrier family 35 member F6 2 4
MIRT672074 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT672319 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT672853 C22orf29 retrotransposon Gag like 10 2 2
MIRT673395 WNT7B Wnt family member 7B 2 2
MIRT673537 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT674285 ZNF724P zinc finger protein 724 2 2
MIRT674494 TIRAP TIR domain containing adaptor protein 2 2
MIRT675460 NUBPL nucleotide binding protein like 2 2
MIRT675569 TRIP11 thyroid hormone receptor interactor 11 2 2
MIRT676068 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT676254 PBOV1 prostate and breast cancer overexpressed 1 2 2
MIRT676377 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676758 SNX2 sorting nexin 2 2 2
MIRT676773 NPHS1 NPHS1, nephrin 2 2
MIRT676874 ENSA endosulfine alpha 2 2
MIRT676918 KLHDC8A kelch domain containing 8A 2 2
MIRT676944 S1PR3 sphingosine-1-phosphate receptor 3 2 2
MIRT676957 HFE hemochromatosis 2 2
MIRT676967 RNF19B ring finger protein 19B 2 2
MIRT676972 ZNF708 zinc finger protein 708 2 2
MIRT677042 ZNF34 zinc finger protein 34 2 2
MIRT677070 VMAC vimentin type intermediate filament associated coiled-coil protein 2 2
MIRT677093 MFSD11 major facilitator superfamily domain containing 11 2 4
MIRT677134 P2RX7 purinergic receptor P2X 7 2 2
MIRT677179 ZNF786 zinc finger protein 786 2 2
MIRT677228 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677320 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 2
MIRT677455 PDLIM3 PDZ and LIM domain 3 2 2
MIRT677809 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT677937 ZNF519 zinc finger protein 519 2 2
MIRT678063 UBN2 ubinuclein 2 2 4
MIRT678072 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678252 FXN frataxin 2 2
MIRT678315 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678367 XIAP X-linked inhibitor of apoptosis 2 4
MIRT678372 RNF115 ring finger protein 115 2 2
MIRT678410 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678518 ZNF347 zinc finger protein 347 2 2
MIRT678566 CDK4 cyclin dependent kinase 4 2 2
MIRT678580 PPP1R3B protein phosphatase 1 regulatory subunit 3B 2 2
MIRT678820 PDE6A phosphodiesterase 6A 2 2
MIRT678917 XPOT exportin for tRNA 2 2
MIRT679217 MAN2A2 mannosidase alpha class 2A member 2 2 2
MIRT679437 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT679595 HILPDA hypoxia inducible lipid droplet associated 2 2
MIRT679755 TLR6 toll like receptor 6 2 2
MIRT679800 APOBEC3A apolipoprotein B mRNA editing enzyme catalytic subunit 3A 2 2
MIRT680057 CD96 CD96 molecule 2 2
MIRT680116 CCDC30 coiled-coil domain containing 30 2 4
MIRT680181 ZNF554 zinc finger protein 554 2 2
MIRT680439 WDR12 WD repeat domain 12 2 2
MIRT680789 ZNF578 zinc finger protein 578 2 2
MIRT692464 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 2 2
MIRT702952 HIP1 huntingtin interacting protein 1 2 2
MIRT706016 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT706032 F2R coagulation factor II thrombin receptor 2 2
MIRT706135 MTRNR2L10 MT-RNR2-like 10 2 2
MIRT706394 HAS2 hyaluronan synthase 2 2 2
MIRT713293 DCP2 decapping mRNA 2 2 2
MIRT716583 BRAP BRCA1 associated protein 2 2
MIRT720433 C19orf47 chromosome 19 open reading frame 47 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-640 Paclitaxel 36314 NSC125973 approved resistant High Ovarian Cancer tissue and cell line (SKOV3)
hsa-miR-640 Cetuximab resistant High Colon Cancer cell line
hsa-miR-640 Trametinib 11707110 NSC758246 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (WM266) (1uM)
hsa-miR-640 Mitoxantrone 4212 NSC279836 approved resistant High Breast Cancer cell line (BT-20, BT-474, BT-549, CAMA-1, HCC1143, HCC1395, HCC1569, HCC1806, HCC-1937, HCC1954, HCC202, HCC38, HCC70, Hs578T, MCF-7, MDA-MB-175VII, MDA-MB-231, MDA-MB-361, MDA-MB-415, MDA-MB-436, MDA-MB-468, SKBR3, T47D, UACC812, EVSA-T, MPE-600 , SK-BR-
hsa-miR-640 Sorafenib 216239 NSC747971 approved sensitive Low Clear Cell Renal Cell Carcinoma cell line (786-O)
hsa-mir-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-640 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-640 Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-640 Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-640 Tamoxifen 2733525 NSC180973 approved sensitive cell line (TamR8)
hsa-miR-640 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-640 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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