miRTarBase - #MIRT565440


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pre-miRNA Information
pre-miRNA hsa-mir-3200   
Genomic Coordinates chr22: 30731557 - 30731641
Description Homo sapiens miR-3200 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3200-3p
Sequence 54| CACCUUGCGCUACUCAGGUCUG |75
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1354947096 9 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SURF4   
Synonyms ERV29
Description surfeit 4
Transcript NM_033161   
Expression
Putative miRNA Targets on SURF4
3'UTR of SURF4
(miRNA target sites are highlighted)		 
>SURF4|NM_033161|3'UTR
   1 CAGTCACAGATCCCTACCTGCCTGGCTAAGACCCGTGGCCGTCAAGGACTGGTTCGGGGTGGATTCAACAAAACTGCCAG
  81 CTTTTATGTATCCTCTTCCCTTCCCCTCCCTTGGTAAAGGCACAGATGTTTTGAGAACTTTATTTGCAGAGACACCTGAG
 161 AATCGATGGCTCAGTCTGCTCTGGAGCCACAGTCTGGCGTCTGACCCTTCAGTGCAGGCCAGCCTGGCAGCTGGAAGCCT
 241 CCCCCACGCCGAGGCTTTGGAGTGAACAGCCCGCTTGGCTGTGGCATCTCAGTCCTATTTTTGAGTTTTTTTGTGGGGGT
 321 ACAGGAGGGGGCCTTCAAGCTGTACTGTGAGCAGACGCATTGGTATTATCATTCAAAGCAGTCTCCCTCTTATTTGTAAG
 401 TTTACATTTTTAGCGGAAACTACTAAATTATTTTGGGTGGTTCAGCCAAACCTCAAAACAGTTAATCTCCCTGGTTTAAA
 481 ATCACACCAGTGGCTTTGATGTTGTTTCTGCCCCGCATTGTATTTTATAGGAATAGTGAAAACATTTAGGGACACCCAAA
 561 GAATGATGCAGTATTAAAGGGGTGGTAGAAGCTGCTGTTTATGATAAAAGTCATCGGTCAGAAAATCAGCTTGGATTGGT
 641 GCCAAGTGTTTTATTGGGTAACACCCTGGGAGTTTTAGTAGCTTGAGGCAAGGTGGAGGGGCAAGAAGTCCTTGGGGAAG
 721 CTGCTGGTCTGGGTGCTGCTGGCCTCCAAGCTGGCAGTGGGAAGGGCTAGTGAGACCACACAGGGGTAGCCCCAGCAGCA
 801 GCACCCTGCAAGCCAGCCTGGCCAGCTGCTCAGACCAGCTTGCAGAGCCGCAGCCGCTGTGGGCAGGGGGTGTGGCAGGA
 881 GCTCCCAGCACTGGAGACCCACGGACTCAACCCAGTTACCTCACATGGGGCCTTTTCTGAGCAAGGTCTCGAAAGCGCAG
 961 GCCGCCCTGGCTGAGCAGCACCGCCCTTTCCCAGCTGCACTCGCCCTGTGGACAGCCCCGACACACCACTTTCCTGAGGC
1041 TGTCGCTCACTCAGATTGTCCGTTTGCTATGCCGAATGCAGCCAAAATTCCTTTTTACAATTTGTGATGCCTTACCGATT
1121 TGATCTTAATCCTGTATTTAAAGTTTTCTAACACTGCCTTATACTGTGTTTCTCTTTTTGGGGGAGCTTAACTGCTTGTT
1201 GCTCCCTGTCGTCTGCACCATAGTAAATGCCACAAGGGTAGTCGAACACCTCTCTGGCCCCTAGACCTATCTGGGGACAG
1281 GCTGGCTCAGCCTGTCTCCAGGGCTGCTGCGGCCCAGCCCCGAGCCTGCCTCCCTCTTGGCCTCTCATCCATTGGCTCTG
1361 CAGGGCAGGGGTGAGGCAGGTTTCTGCTCATAAGTGCTTTTGGAAGTCACCTACCTTTTTAACACAGCCGAACTAGTCCC
1441 AACGCGTTTGCAAATATTCCCCTGGTAGCCTACTTCCTTACCCCCGAATATTGGTAAGATCGAGCAATGGCTTCAGGACA
1521 TGGGTTCTCTTCTCCTGTGATCATTCAAGTGCTCACTGCATGAAGACTGGCTTGTCTCAGTGTTTCAACCTCACCAGGGC
1601 TGTCTCTTGGTCCACACCTCGCTCCCTGTTAGTGCCGTATGACAGCCCCCATCAAATGACCTTGGCCAAGTCACGGTTTC
1681 TCTGTGGTCAAGGTTGGTTGGCTGATTGGTGGAAAGTAGGGTGGACCAAAGGAGGCCACGTGAGCAGTCAGCACCAGTTC
1761 TGCACCAGCAGCGCCTCCGTCCTAGTGGGTGTTCCTGTTTCTCCTGGCCCTGGGTGGGCTAGGGCCTGATTCGGGAAGAT
1841 GCCTTTGCAGGGAGGGGAGGATAAGTGGGATCTACCAATTGATTCTGGCAAAACAATTTCTAAGATTTTTTTGCTTTATG
1921 TGGGAAACAGATCTAAATCTCATTTTATGCTGTATTTTATATCTTAGTTGTGTTTGAAAACGTTTTGATTTTTGGAAACA
2001 CATCAAAATAAATAATGGCGTTTGTTGTATGCAGTGTGATCCTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guCU-GGACUCAUCG-----CGUUCCAc 5'
            || ::| ||||||     ||||||| 
Target 5' ggGAGTTTTAGTAGCTTGAGGCAAGGTg 3'
 668 - 695 160.00 -19.70
2 
miRNA  3' guCUGGACUCAUCGCGUUCCAc 5'
            |:|||     | ||||||| 
Target 5' ggGGCCTTTTCTGAGCAAGGTc 3'
 927 - 948 148.00 -15.90
3 
miRNA  3' gucuGGACUCAUCGCGUUCCAc 5'
              :||  ||:|  |||||| 
Target 5' ggttTCTCTGTGG-TCAAGGTt 3'
 1675 - 1695 121.00 -12.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM8066455 14 COSMIC
COSM7210750 18 COSMIC
COSM6793326 19 COSMIC
COSM5950615 24 COSMIC
COSM8296950 25 COSMIC
COSM7273907 31 COSMIC
COSM8064953 34 COSMIC
COSM7975059 37 COSMIC
COSM7601639 55 COSMIC
COSM8946816 56 COSMIC
COSN1084759 103 COSMIC
COSM8456304 117 COSMIC
COSN31521269 162 COSMIC
COSN30510063 180 COSMIC
COSN28872931 305 COSMIC
COSN6381514 356 COSMIC
COSN26133218 514 COSMIC
COSN9278648 610 COSMIC
COSN20106704 648 COSMIC
COSN28045168 790 COSMIC
COSN31544393 885 COSMIC
COSN31541427 1020 COSMIC
COSN20092032 1269 COSMIC
COSN23753839 1298 COSMIC
COSN19353114 1570 COSMIC
COSN5119795 1576 COSMIC
COSN9278647 1721 COSMIC
COSN27259302 1772 COSMIC
COSN19551348 1901 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs782478527 1 dbSNP
rs782210729 6 dbSNP
rs782642223 10 dbSNP
rs1262401793 11 dbSNP
rs782515192 12 dbSNP
rs1391342865 14 dbSNP
rs781907267 16 dbSNP
rs1375323264 18 dbSNP
rs368847312 19 dbSNP
rs1474448948 21 dbSNP
rs958317167 23 dbSNP
rs1248578127 24 dbSNP
rs1470497291 26 dbSNP
rs879483480 28 dbSNP
rs374943143 34 dbSNP
rs376036699 35 dbSNP
rs1174503585 39 dbSNP
rs781799566 40 dbSNP
rs372779831 41 dbSNP
rs782732990 44 dbSNP
rs1294805291 45 dbSNP
rs1433317962 48 dbSNP
rs1002662178 53 dbSNP
rs781978950 54 dbSNP
rs782102362 55 dbSNP
rs1403951272 56 dbSNP
rs1343261223 58 dbSNP
rs781922883 60 dbSNP
rs1301616881 62 dbSNP
rs782796947 63 dbSNP
rs782324255 64 dbSNP
rs184769302 65 dbSNP
rs1170330388 66 dbSNP
rs199633690 71 dbSNP
rs1437809514 75 dbSNP
rs782308529 76 dbSNP
rs1302309413 79 dbSNP
rs1191847182 81 dbSNP
rs1345442564 82 dbSNP
rs782228715 83 dbSNP
rs1218573085 86 dbSNP
rs782032849 86 dbSNP
rs965147138 86 dbSNP
rs1184029746 87 dbSNP
rs1261126336 88 dbSNP
rs1184014640 90 dbSNP
rs781949534 95 dbSNP
rs1250600492 96 dbSNP
rs782378336 97 dbSNP
rs782255423 100 dbSNP
rs1278630577 107 dbSNP
rs782412560 109 dbSNP
rs782036261 110 dbSNP
rs782179057 114 dbSNP
rs782579836 118 dbSNP
rs782466300 128 dbSNP
rs782648307 138 dbSNP
rs1394763023 139 dbSNP
rs1298031859 141 dbSNP
rs782749946 142 dbSNP
rs1160769756 151 dbSNP
rs1361415051 153 dbSNP
rs782553074 155 dbSNP
rs1027208762 164 dbSNP
rs995702776 165 dbSNP
rs1048061455 170 dbSNP
rs1441068039 171 dbSNP
rs969385012 172 dbSNP
rs1023588580 180 dbSNP
rs932369231 187 dbSNP
rs782034766 192 dbSNP
rs369134156 198 dbSNP
rs1401263856 199 dbSNP
rs1307372613 203 dbSNP
rs587686020 204 dbSNP
rs1316126002 207 dbSNP
rs921034080 209 dbSNP
rs1014121381 213 dbSNP
rs587621014 239 dbSNP
rs1052924705 241 dbSNP
rs1214352109 242 dbSNP
rs1252472265 243 dbSNP
rs41306722 245 dbSNP
rs1251681739 246 dbSNP
rs914151868 247 dbSNP
rs903005212 248 dbSNP
rs587692883 250 dbSNP
rs947283183 251 dbSNP
rs980811497 253 dbSNP
rs1391670558 254 dbSNP
rs145481023 262 dbSNP
rs1258244763 271 dbSNP
rs1039393815 272 dbSNP
rs943665928 273 dbSNP
rs754893193 277 dbSNP
rs912335765 281 dbSNP
rs982911459 285 dbSNP
rs1291955121 299 dbSNP
rs1314739415 311 dbSNP
rs782694290 314 dbSNP
rs1232613006 317 dbSNP
rs41297219 318 dbSNP
rs1332850082 321 dbSNP
rs1306860905 324 dbSNP
rs782429069 324 dbSNP
rs920076607 331 dbSNP
rs1252155275 336 dbSNP
rs587651608 352 dbSNP
rs959896365 353 dbSNP
rs1015443855 356 dbSNP
rs1260081428 357 dbSNP
rs782179050 359 dbSNP
rs766377170 361 dbSNP
rs1415016508 369 dbSNP
rs1377955665 370 dbSNP
rs1170685090 372 dbSNP
rs1353606746 373 dbSNP
rs969604618 375 dbSNP
rs1314417773 377 dbSNP
rs1023809261 380 dbSNP
rs992190339 383 dbSNP
rs1414085367 385 dbSNP
rs960962089 387 dbSNP
rs782071245 388 dbSNP
rs1216444424 392 dbSNP
rs1031113439 393 dbSNP
rs899559664 395 dbSNP
rs1307087863 397 dbSNP
rs999999549 410 dbSNP
rs371716035 411 dbSNP
rs781928507 414 dbSNP
rs914034217 418 dbSNP
rs11543366 419 dbSNP
rs1186557426 421 dbSNP
rs1400710239 423 dbSNP
rs370657081 438 dbSNP
rs936892373 447 dbSNP
rs782038870 449 dbSNP
rs925587129 451 dbSNP
rs1440655059 452 dbSNP
rs1433919254 464 dbSNP
rs1238409041 472 dbSNP
rs899755409 473 dbSNP
rs981161796 477 dbSNP
rs1346852533 478 dbSNP
rs1192552923 482 dbSNP
rs1431421078 498 dbSNP
rs1487293345 500 dbSNP
rs1248016601 501 dbSNP
rs1270788515 502 dbSNP
rs112514889 504 dbSNP
rs113643863 505 dbSNP
rs200974230 507 dbSNP
rs1316321601 514 dbSNP
rs114749077 515 dbSNP
rs943732755 523 dbSNP
rs992209498 528 dbSNP
rs2494 536 dbSNP
rs1449193474 537 dbSNP
rs1217134574 542 dbSNP
rs202135735 543 dbSNP
rs371842564 543 dbSNP
rs186392195 544 dbSNP
rs1195087910 557 dbSNP
rs929725344 559 dbSNP
rs149744232 562 dbSNP
rs782200451 567 dbSNP
rs1171470353 568 dbSNP
rs948198803 574 dbSNP
rs587757813 577 dbSNP
rs587719147 582 dbSNP
rs78266970 583 dbSNP
rs1420705060 584 dbSNP
rs899540396 591 dbSNP
rs1394916637 594 dbSNP
rs587754501 596 dbSNP
rs1433054570 597 dbSNP
rs1019244712 600 dbSNP
rs1172157403 607 dbSNP
rs1007910308 609 dbSNP
rs1440479716 610 dbSNP
rs1273368327 611 dbSNP
rs1426805097 615 dbSNP
rs41302669 617 dbSNP
rs1224810919 636 dbSNP
rs1284234638 638 dbSNP
rs960761654 642 dbSNP
rs1314579762 645 dbSNP
rs71281255 652 dbSNP
rs892232124 652 dbSNP
rs185237735 653 dbSNP
rs35905067 653 dbSNP
rs1485236776 658 dbSNP
rs587763416 664 dbSNP
rs978232465 678 dbSNP
rs1052541860 679 dbSNP
rs1470424062 687 dbSNP
rs968131979 695 dbSNP
rs181331016 697 dbSNP
rs587670687 698 dbSNP
rs1045355508 701 dbSNP
rs116430927 706 dbSNP
rs899640859 710 dbSNP
rs1440434081 711 dbSNP
rs1321890752 723 dbSNP
rs1018222395 727 dbSNP
rs1443432955 738 dbSNP
rs1008545422 739 dbSNP
rs1279367902 744 dbSNP
rs1349117841 757 dbSNP
rs1279430670 768 dbSNP
rs1273194757 772 dbSNP
rs1333604941 774 dbSNP
rs1211423688 779 dbSNP
rs890836419 781 dbSNP
rs759994156 782 dbSNP
rs907986382 784 dbSNP
rs1476115933 785 dbSNP
rs1302193521 790 dbSNP
rs1188649956 791 dbSNP
rs986590800 803 dbSNP
rs929611027 818 dbSNP
rs898253969 819 dbSNP
rs1418643445 822 dbSNP
rs1038056158 849 dbSNP
rs952613026 850 dbSNP
rs948250631 852 dbSNP
rs1328532737 853 dbSNP
rs112902455 855 dbSNP
rs916716707 856 dbSNP
rs963949408 858 dbSNP
rs1354247586 859 dbSNP
rs587633441 861 dbSNP
rs1242035042 866 dbSNP
rs992461877 868 dbSNP
rs587758357 869 dbSNP
rs1375338170 870 dbSNP
rs1019212190 871 dbSNP
rs1194890292 871 dbSNP
rs939588765 875 dbSNP
rs1272136079 877 dbSNP
rs1486560659 878 dbSNP
rs201309595 880 dbSNP
rs924180097 886 dbSNP
rs1256764942 887 dbSNP
rs782699943 888 dbSNP
rs968018557 890 dbSNP
rs1185447383 891 dbSNP
rs587702406 895 dbSNP
rs1379041875 899 dbSNP
rs915342962 902 dbSNP
rs1427423431 903 dbSNP
rs1369083102 905 dbSNP
rs974813995 920 dbSNP
rs963898909 922 dbSNP
rs28634037 925 dbSNP
rs1008179837 929 dbSNP
rs1319657899 931 dbSNP
rs1326516400 932 dbSNP
rs587745736 938 dbSNP
rs373617682 943 dbSNP
rs1025521054 950 dbSNP
rs1361867396 951 dbSNP
rs147188103 956 dbSNP
rs953784738 957 dbSNP
rs77706944 962 dbSNP
rs1038108683 963 dbSNP
rs1206838668 964 dbSNP
rs587734625 966 dbSNP
rs895349523 967 dbSNP
rs587675712 971 dbSNP
rs1188130730 975 dbSNP
rs192500515 977 dbSNP
rs924205057 980 dbSNP
rs1280217277 982 dbSNP
rs587713993 983 dbSNP
rs776974291 985 dbSNP
rs587640109 986 dbSNP
rs1042635602 988 dbSNP
rs1160858480 994 dbSNP
rs1355410140 996 dbSNP
rs963917922 997 dbSNP
rs1019515317 1002 dbSNP
rs986428088 1003 dbSNP
rs1302343558 1006 dbSNP
rs1310281130 1007 dbSNP
rs782502860 1018 dbSNP
rs1031093213 1019 dbSNP
rs1351464565 1020 dbSNP
rs782008980 1020 dbSNP
rs587602764 1025 dbSNP
rs915230193 1032 dbSNP
rs974866168 1033 dbSNP
rs1194515752 1036 dbSNP
rs1297954583 1044 dbSNP
rs781841671 1045 dbSNP
rs965149354 1048 dbSNP
rs896720859 1049 dbSNP
rs1396050625 1053 dbSNP
rs1461627527 1054 dbSNP
rs1397642725 1056 dbSNP
rs1056772085 1060 dbSNP
rs79976494 1061 dbSNP
rs987042232 1062 dbSNP
rs1335053894 1066 dbSNP
rs1367820006 1067 dbSNP
rs955212455 1069 dbSNP
rs1266251739 1073 dbSNP
rs781913239 1074 dbSNP
rs1425469555 1077 dbSNP
rs1214544486 1085 dbSNP
rs994026522 1090 dbSNP
rs962392613 1091 dbSNP
rs1179281888 1099 dbSNP
rs1251697652 1101 dbSNP
rs1472518270 1102 dbSNP
rs1039495322 1108 dbSNP
rs139684139 1116 dbSNP
rs587770777 1119 dbSNP
rs587713399 1125 dbSNP
rs1260182789 1127 dbSNP
rs1199385180 1134 dbSNP
rs1011830611 1152 dbSNP
rs912472366 1154 dbSNP
rs1347703953 1156 dbSNP
rs1334163681 1157 dbSNP
rs1298464867 1158 dbSNP
rs1395520459 1162 dbSNP
rs1407901956 1163 dbSNP
rs147258944 1165 dbSNP
rs956626539 1166 dbSNP
rs782454351 1170 dbSNP
rs923606595 1170 dbSNP
rs587759266 1174 dbSNP
rs1206909206 1176 dbSNP
rs1306788840 1180 dbSNP
rs902669401 1184 dbSNP
rs1203593340 1185 dbSNP
rs979520643 1185 dbSNP
rs1445003034 1186 dbSNP
rs1475832847 1187 dbSNP
rs781997827 1190 dbSNP
rs1332877193 1205 dbSNP
rs782401909 1208 dbSNP
rs587695452 1210 dbSNP
rs1023829142 1211 dbSNP
rs141898333 1212 dbSNP
rs1375952546 1214 dbSNP
rs1389456948 1216 dbSNP
rs1302281753 1217 dbSNP
rs1377147060 1219 dbSNP
rs946951238 1220 dbSNP
rs1216545915 1228 dbSNP
rs1296612396 1233 dbSNP
rs35337827 1239 dbSNP
rs1341868820 1241 dbSNP
rs1226583234 1245 dbSNP
rs587740256 1252 dbSNP
rs915279523 1256 dbSNP
rs1039061689 1258 dbSNP
rs1160943130 1262 dbSNP
rs1459414993 1266 dbSNP
rs1210043947 1267 dbSNP
rs78072806 1271 dbSNP
rs1186709880 1275 dbSNP
rs1035193219 1279 dbSNP
rs911982922 1282 dbSNP
rs587630481 1285 dbSNP
rs1395475694 1286 dbSNP
rs1413828618 1288 dbSNP
rs987559335 1293 dbSNP
rs1357470908 1297 dbSNP
rs933840433 1298 dbSNP
rs587734562 1301 dbSNP
rs1321324965 1302 dbSNP
rs587771767 1307 dbSNP
rs1451240627 1311 dbSNP
rs1433173335 1314 dbSNP
rs1265445365 1315 dbSNP
rs1211685842 1317 dbSNP
rs1306008318 1317 dbSNP
rs1049048453 1318 dbSNP
rs1331510598 1319 dbSNP
rs1277163672 1320 dbSNP
rs189616967 1321 dbSNP
rs900584808 1322 dbSNP
rs962607699 1328 dbSNP
rs587597421 1332 dbSNP
rs587741496 1334 dbSNP
rs1039129103 1336 dbSNP
rs1260603696 1342 dbSNP
rs1195177774 1344 dbSNP
rs990909518 1347 dbSNP
rs1477598697 1352 dbSNP
rs1189377218 1357 dbSNP
rs1410009011 1362 dbSNP
rs959039873 1365 dbSNP
rs1159916408 1366 dbSNP
rs944801359 1366 dbSNP
rs1035213643 1367 dbSNP
rs587653574 1369 dbSNP
rs587606187 1375 dbSNP
rs1050904023 1376 dbSNP
rs1310430917 1377 dbSNP
rs782257020 1380 dbSNP
rs143682688 1386 dbSNP
rs587691001 1390 dbSNP
rs1376088412 1393 dbSNP
rs1039281524 1395 dbSNP
rs979101502 1416 dbSNP
rs968157190 1423 dbSNP
rs943378315 1426 dbSNP
rs587631689 1429 dbSNP
rs587735762 1430 dbSNP
rs1450708075 1435 dbSNP
rs929398719 1436 dbSNP
rs1219060337 1441 dbSNP
rs919308310 1442 dbSNP
rs587676985 1443 dbSNP
rs1181436808 1444 dbSNP
rs941172016 1445 dbSNP
rs28560158 1446 dbSNP
rs950979644 1448 dbSNP
rs1417646756 1457 dbSNP
rs1028363666 1459 dbSNP
rs994843293 1461 dbSNP
rs1356706266 1462 dbSNP
rs1410971855 1463 dbSNP
rs900468108 1464 dbSNP
rs1477847621 1472 dbSNP
rs1376111203 1476 dbSNP
rs781810127 1479 dbSNP
rs990738563 1481 dbSNP
rs1201128367 1482 dbSNP
rs959323199 1485 dbSNP
rs1438246498 1486 dbSNP
rs1034690870 1487 dbSNP
rs1249584848 1489 dbSNP
rs982305364 1490 dbSNP
rs782669849 1493 dbSNP
rs1215153433 1494 dbSNP
rs1008914703 1501 dbSNP
rs149425301 1502 dbSNP
rs1059773 1504 dbSNP
rs41309956 1507 dbSNP
rs587688006 1514 dbSNP
rs1307834072 1524 dbSNP
rs1272676931 1528 dbSNP
rs1017892663 1529 dbSNP
rs1369206276 1531 dbSNP
rs146867534 1531 dbSNP
rs369816986 1531 dbSNP
rs1334180673 1532 dbSNP
rs782132220 1537 dbSNP
rs782778253 1539 dbSNP
rs1271607178 1542 dbSNP
rs990502022 1543 dbSNP
rs1227326967 1544 dbSNP
rs1007806671 1545 dbSNP
rs1277006955 1546 dbSNP
rs587628713 1548 dbSNP
rs1051779483 1549 dbSNP
rs1362348915 1555 dbSNP
rs927723768 1556 dbSNP
rs587755791 1557 dbSNP
rs1298635619 1562 dbSNP
rs983637932 1565 dbSNP
rs782691141 1566 dbSNP
rs1413655080 1571 dbSNP
rs2240172 1574 dbSNP
rs1450359277 1577 dbSNP
rs1168280477 1581 dbSNP
rs897930216 1588 dbSNP
rs1027830282 1591 dbSNP
rs782367658 1595 dbSNP
rs1400831110 1599 dbSNP
rs965009401 1601 dbSNP
rs1017531496 1610 dbSNP
rs1008880536 1617 dbSNP
rs192053765 1620 dbSNP
rs1373003253 1621 dbSNP
rs1423087468 1622 dbSNP
rs1255392672 1626 dbSNP
rs1342813403 1627 dbSNP
rs1198764245 1628 dbSNP
rs587720982 1628 dbSNP
rs1465466361 1634 dbSNP
rs1188229254 1635 dbSNP
rs909702600 1636 dbSNP
rs11101 1637 dbSNP
rs782420483 1640 dbSNP
rs1465009098 1643 dbSNP
rs371167333 1649 dbSNP
rs1388809705 1658 dbSNP
rs782107085 1666 dbSNP
rs587616890 1669 dbSNP
rs747818264 1674 dbSNP
rs913667296 1675 dbSNP
rs989216977 1676 dbSNP
rs1323803336 1680 dbSNP
rs927692660 1680 dbSNP
rs958230528 1696 dbSNP
rs1017762700 1697 dbSNP
rs41306724 1704 dbSNP
rs782336618 1707 dbSNP
rs973611766 1708 dbSNP
rs587688780 1709 dbSNP
rs1210766334 1711 dbSNP
rs1278723246 1712 dbSNP
rs1447026761 1715 dbSNP
rs782306007 1733 dbSNP
rs754693940 1739 dbSNP
rs1472008793 1744 dbSNP
rs1037772514 1755 dbSNP
rs2107368 1760 dbSNP
rs1415295516 1761 dbSNP
rs141335545 1763 dbSNP
rs782586507 1765 dbSNP
rs1467212214 1766 dbSNP
rs1292674402 1772 dbSNP
rs1031638967 1774 dbSNP
rs1181729414 1778 dbSNP
rs888315787 1779 dbSNP
rs782408646 1781 dbSNP
rs1054976986 1786 dbSNP
rs1323658363 1787 dbSNP
rs968848058 1789 dbSNP
rs1265225526 1794 dbSNP
rs1472089158 1799 dbSNP
rs1207898606 1801 dbSNP
rs1239649412 1802 dbSNP
rs937804170 1804 dbSNP
rs587733671 1805 dbSNP
rs1010765008 1807 dbSNP
rs1415352369 1828 dbSNP
rs587699217 1830 dbSNP
rs1163717183 1832 dbSNP
rs587600967 1833 dbSNP
rs1064704 1838 dbSNP
rs1431450804 1839 dbSNP
rs1003471746 1841 dbSNP
rs906159271 1842 dbSNP
rs782298077 1845 dbSNP
rs989262590 1846 dbSNP
rs1306193504 1854 dbSNP
rs1381523609 1860 dbSNP
rs1273075485 1861 dbSNP
rs1312343864 1867 dbSNP
rs1320169007 1870 dbSNP
rs957781194 1873 dbSNP
rs929020171 1878 dbSNP
rs587717932 1879 dbSNP
rs1227734049 1880 dbSNP
rs910253844 1881 dbSNP
rs1238695382 1890 dbSNP
rs1483313278 1891 dbSNP
rs117381245 1896 dbSNP
rs1253582879 1903 dbSNP
rs1339199961 1904 dbSNP
rs138420913 1905 dbSNP
rs1389332594 1909 dbSNP
rs1427726326 1910 dbSNP
rs1178196541 1912 dbSNP
rs1360946269 1913 dbSNP
rs1466576261 1913 dbSNP
rs188444259 1920 dbSNP
rs1377166952 1922 dbSNP
rs1437566525 1927 dbSNP
rs1376476803 1928 dbSNP
rs1329479309 1931 dbSNP
rs1365011484 1932 dbSNP
rs1449106286 1937 dbSNP
rs993691655 1950 dbSNP
rs1164167042 1954 dbSNP
rs910795672 1955 dbSNP
rs1253741088 1957 dbSNP
rs962060438 1959 dbSNP
rs954959029 1963 dbSNP
rs587650921 1968 dbSNP
rs1016212209 1970 dbSNP
rs924581129 1970 dbSNP
rs1164224842 1981 dbSNP
rs1439432289 1985 dbSNP
rs977461202 1989 dbSNP
rs587755484 1990 dbSNP
rs969194068 1999 dbSNP
rs1006145519 2001 dbSNP
rs1010737629 2003 dbSNP
rs1176339551 2003 dbSNP
rs959159140 2009 dbSNP
rs1033514992 2010 dbSNP
rs1458808829 2014 dbSNP
rs782641219 2019 dbSNP
rs906464203 2020 dbSNP
rs587694135 2024 dbSNP
rs1368831468 2027 dbSNP
rs1220154072 2030 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gucuggacucaucgcGUUCCac 5'
                         || ||  
Target 5' aacccaguuaccucaCAUGGgg 3'
 		5 - 26
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM4903825
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID14_NS
Location of target site NM_033161 | 3UTR | AAGCCAGCCUGGCCAGCUGCUCAGACCAGCUUGCAGAGCCGCAGCCGCUGUGGGCAGGGGGUGUGGCAGGAGCUCCCAGCACUGGAGACCCACGGACUCAACCCAGUUACCUCACAUGGGGCCUUUUCUGAGCAAGGUCUCGAAAGCGCAGGCCGCCCUGGCUGAGCAGCACCGCCCUUUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_033161 | 3UTR | CCUCACAUGGGGCCUUUUCUGAGCAAGGUCUCGAAAGCGCAGGCCGCCCUGGCUGAGCAGCACCGCCCUUUCCCAGCUGCACUCGCCCUGUGGACAGCCCCGACACACCACUUUCCUGAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_033161 | 3UTR | CCUCACAUGGGGCCUUUUCUGAGCAAGGUCUCGAAAGCGCAGGCCGCCCUGGCUGAGCAGCACCGCCCUUUCCCAGCUGCACUCGCCCUGUGGACAGCCCCGACACACCACUUUCCUGAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_033161 | 3UTR | AUGGGGCCUUUUCUGAGCAAGGUCUCGAAAGCGCAGGCCGCCCUGGCUGAGCAGCACCGCCCUUUCCCAGCUGCACUCGCCCUGUGGACAGCCCCGACACACCACUUUCCUGAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_033161 | 3UTR | AUGGGGCCUUUUCUGAGCAAGGUCUCGAAAGCGCAGGCCGCCCUGGCUGAGCAGCACCGCCCUUUCCCAGCUGCACUCGCCCUGUGGACAGCCCCGACACACCACUUUCCUGAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_033161 | 3UTR | CAUGGGGCCUUUUCUGAGCAAGGUCUCGAAAGCGCAGGCCGCCCUGGCUGAGCAGCACCGCCCUUUCCCAGCUGCACUCGCCCUGUGGACAGCCCCGACACACCACUUUCCUGAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_033161 | 3UTR | CUCAACCCAGUUACCUCACAUGGGGCCUUUUCUGAGCAAGGUCUCGAAAGCGCAGGCCGCCCUGGCUGAGCAGCACCGCCCUUUCCCAGCUGCACUCGCCCUGUGGACAGCCCCGACACACCACUUUCCUGAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000545297.1 | 3UTR | ACUCAACCCAGUUACCUCACAUGGGGCCUUUUCUGAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
KIRP 0.368 0.02 0.312 0.04 32 Click to see details
CHOL -0.676 0.03 -0.619 0.05 8 Click to see details
UCEC 0.409 0.04 0.379 0.05 19 Click to see details
STAD 0.289 0.06 0.341 0.03 31 Click to see details
ESCA 0.595 0.08 0.036 0.47 7 Click to see details
PRAD 0.173 0.13 0.067 0.33 44 Click to see details
THCA -0.133 0.16 -0.169 0.1 59 Click to see details
HNSC -0.153 0.18 -0.195 0.12 38 Click to see details
LUAD -0.304 0.21 -0.317 0.2 9 Click to see details
BLCA -0.151 0.29 -0.129 0.32 16 Click to see details
CESC -0.613 0.29 -0.500 0.33 3 Click to see details
PCPG -0.436 0.36 -0.500 0.33 3 Click to see details
PAAD -0.213 0.39 0.400 0.3 4 Click to see details
LIHC -0.028 0.43 0.002 0.49 45 Click to see details
BRCA 0.02 0.43 0.051 0.33 73 Click to see details
LUSC 0.022 0.45 0.014 0.47 38 Click to see details
KICH -0.02 0.46 -0.054 0.4 25 Click to see details
KIRC -0.01 0.47 -0.083 0.26 65 Click to see details
KIRC -0.01 0.47 -0.083 0.26 65 Click to see details
35 hsa-miR-3200-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT052815 CDC37 cell division cycle 37 1 1
MIRT052816 ATP6V1E2 ATPase H+ transporting V1 subunit E2 1 1
MIRT052817 MCM3AP minichromosome maintenance complex component 3 associated protein 1 1
MIRT052818 NSUN4 NOP2/Sun RNA methyltransferase family member 4 1 1
MIRT052819 EXOC4 exocyst complex component 4 1 1
MIRT052820 DDB1 damage specific DNA binding protein 1 1 1
MIRT052821 CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase 1 1
MIRT052822 RPL23 ribosomal protein L23 1 1
MIRT052823 TPT1 tumor protein, translationally-controlled 1 1 1
MIRT052824 RPSA ribosomal protein SA 1 1
MIRT052825 PPIA peptidylprolyl isomerase A 1 1
MIRT052826 SSRP1 structure specific recognition protein 1 1 1
MIRT052827 STX2 syntaxin 2 1 1
MIRT095464 PURA purine rich element binding protein A 2 4
MIRT325192 PSAT1 phosphoserine aminotransferase 1 2 2
MIRT447293 ZNF562 zinc finger protein 562 2 2
MIRT450360 GRAMD3 GRAM domain containing 2B 2 2
MIRT482917 ZNF845 zinc finger protein 845 2 2
MIRT498302 DCAF8 DDB1 and CUL4 associated factor 8 2 2
MIRT500041 PABPC3 poly(A) binding protein cytoplasmic 3 2 8
MIRT541475 ARHGAP12 Rho GTPase activating protein 12 2 12
MIRT556269 MAPK6 mitogen-activated protein kinase 6 2 2
MIRT565440 SURF4 surfeit 4 2 2
MIRT573386 GPR20 G protein-coupled receptor 20 2 2
MIRT627911 OCIAD2 OCIA domain containing 2 2 2
MIRT633645 SKAP2 src kinase associated phosphoprotein 2 2 2
MIRT643472 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT646284 GALNT2 polypeptide N-acetylgalactosaminyltransferase 2 2 2
MIRT647889 CD55 CD55 molecule (Cromer blood group) 2 2
MIRT664712 EIF4G3 eukaryotic translation initiation factor 4 gamma 3 2 2
MIRT668135 GINS2 GINS complex subunit 2 2 2
MIRT686490 TRIOBP TRIO and F-actin binding protein 2 2
MIRT709525 IGF2 insulin like growth factor 2 2 2
MIRT722252 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 2
MIRT755478 CAMK2A calcium/calmodulin dependent protein kinase II alpha 4 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3200 Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7, T47D)
hsa-mir-3200 Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (BGC823)
hsa-mir-3200 Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-3200 Tamoxifen 2733525 NSC180973 approved resistant cell line (MCF7)
hsa-mir-3200 Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-mir-3200 Cisplatin 5460033 NSC119875 approved resistant cell line (BGC-823)
hsa-miR-3200-3p Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-3200-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-miR-3200-3p Plx-4720 24180719 NSC757438 sensitive High Thyroid Cancer cell line (8505c, BCPAP)
hsa-miR-3200-3p Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-3200-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-3200-3p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-3200-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-3200-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (HS578T)
hsa-miR-3200-3p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-3200-3p Fluorouracil 3385 NSC19893 approved sensitive cell line (HCT15)
hsa-miR-3200-3p Platinum 23939 resistant tissue (non-small cell lung cancer)
hsa-miR-3200-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3200-3p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-3200-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide sensitive cell line (Bads-200)

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