pre-miRNA Information
pre-miRNA hsa-mir-4301   
Genomic Coordinates chr11: 113450023 - 113450088
Description Homo sapiens miR-4301 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4301
Sequence 11| UCCCACUACUUCACUUGUGA |30
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs184176277 2 dbSNP
rs1191324913 13 dbSNP
rs1369198005 15 dbSNP
rs1036973189 16 dbSNP
rs944900541 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SLC31A1   
Synonyms COPT1, CTR1
Description solute carrier family 31 member 1
Transcript NM_001859   
Expression
Putative miRNA Targets on SLC31A1
3'UTR of SLC31A1
(miRNA target sites are highlighted)
>SLC31A1|NM_001859|3'UTR
   1 CATCAAACTCTATGGCGTGGCCTTATCGATTGCAGTGGGAAGTTGTTGAAGACTTGAAGACGTGATTCCTGCTCCAATCA
  81 TCCCTTCTTGCTCCTCTTTGTGCACGTACACACACACACACACACACACACACACACACCCCTGCTCAACAGAGGTTTAG
 161 TTTACAGTCTCTGAACTAAAGTAGTAACCTCCCAAATTGTTTTTTCTAATAAGCTGAGATTCCCATTTCTCTTAAGGAGA
 241 AGCCACCCATGAGATGTCTTTTCCTTCTCCATCATCTTAGAGCCAAGTTATATGTTCTTGTCTAATCCATGTAGCTTTTT
 321 GTTCAATGACTTGATCATCTGCTTCCTTTTTGAATTTTTAACAGATAGTAAGTAAATTTGGTGGTTTTTTCCCCTGGGTC
 401 AGTGATGGAAAGGGGTTAACTTCAGCCAGGATTGATGGCAGCTGAGGGAAATTCTTGCCCAACTAAACCCAGAACTCAAA
 481 CTTAACATTAGAAAATAAGGTCCAGGGCCGGACACAGTGGCCCATGCCTGTAATCCCAGCACTTTGGGGGGCCAAGGCAG
 561 GCTGGATCACCTGAGGACAGGAGTTCGAGACCAGTCTGGCCAACATGGGGAAACCCCGTCTCTACTAAAAATACAAAAAT
 641 TAGCCGGGCATGGTGGTGGGCGCCTGTAATCCCAGCTACTCAGAAGGCTGAGGCAGGAGAATCACTTGAACCTAGGAGGC
 721 GGAGGTTGCAGTGAGCCAAGATGGCGCCATTGCACTCCAGCCTGGGTGACAAGAGTGAAACTCCATCTCAAAAAAAAAGA
 801 AAAGAAGGTCCAGCTTTTGGATTCAATGAGTGGGAAATACATTGTGCCTTTCTCTAGATGTGATACGTTATACCAAAATC
 881 TTTGTAGTGTGCAGAGCGGTGGTTTGAGACTAAATACAGGCTTAGAACTTGCAGAGTGTGTATTCTTGGATGGCTGATGC
 961 ATCGACTTGCATTCCCACTTAACACTTTGATTAGCATGAACTTGCCAATCAAAAAATGACAATCAATTTGAGAAAATAGA
1041 AATAGATATTTTTAAATAAAACCATTCACAGTTTACTTTGTCTTGATACCTTGGTTTGTCCCAGCTGAAGTGAAGCAAGA
1121 GAGTTTGAATTAATTTTTCCATTATAATGTTTTCGCATGTCTGCCTCTAAAACTGTGATTTTCAAGCTTTAGCGTGCATC
1201 AGAATCACCTGTAGGGCTTGTTAAAACACTAATTGCTGGGCCTCAACCCAAAAGCCCCCAAAGTGGCACTTCTGAGTTCC
1281 TGCTGATGTTACAAGGGACCACACTTTTGAGAATCTGTGCTTTAAGCTAAGGAAATATTGCCTGGTGGGTTGGCTGCCTG
1361 GTATTGGGCATGGAAATTTGAATTGCTGATTGGTAGATGGTGTGTCTGGACTTAACTCACGTAGTAAATACTGCTGATCA
1441 ATACCTAATCATTCCACATTTATTGAGCTCCACCTGTGTGTATGTGTACCCAAGCACACATGTGTGAAGGGCTATAGCCA
1521 AAGTATTTTTACTAGCCTGTATGAAATCACTAGTCCTTATTTTTAAAGGTCTATGGTTTCTTGGAAGTAGTTTGATTGTT
1601 GAGAGAGACCTTTGATCTGCAGTGTAAATCTACCAGTCATGGGCCAGAAGGGCAAAAGCCCAGCTTTCTCTTTGGAAAGA
1681 CTCAGGCTGTGGTTTGTTGATGGCCAGGTTTTCCTCAGGCTCCAACAACTGTGCTTATACCAAGCAGATCCTCATCCTCC
1761 ATATAATCATCTTTGTTATTCGTGGGGGTTTAATTACATTACAAGTGGCCAAAACCCCTGTTCTCAGTGAAGAACCACAT
1841 TGGATTTGTATTCTGTTCAGTTGTAGTCTACACTGCAGTCTTATTCCTGGTTCAAACTACCTCTTTAAATTGATTTGTCT
1921 TGTGCTGGTCTGTTAAATCCTGCCCTCCTTGGTGCTAGATCCAGTTGTGCCTCAGGGCAGAGGAAACAAAACACAGCTAT
2001 CCTGTTGGCCTGTGTTGTGGTTTTGAAGTTTGTACTTTCTCTGTGGGTGCCAGTTAAATATTGGAGAGCAAGGAATGTGG
2081 ACTTGTATGGCTTTGAACCAAGAGAGGGTTATGAGCCTACTGGATTGAGGTTAAAATCCAAGAACCAACATTTAGAGCTT
2161 TGTGCTTTTCTCTCATTCCATCACTTTGTAATGATGATACTTAACATGAGCAGGGTGAATGACAGGTACTGACGAAGTCC
2241 AACACAAAGGTATAATACAGCCTGTTGTCTAAAGCCAAGGAGTCATAAAACCATGAGAAATAAATAGGAATCAATAGTTA
2321 GTAGTGACATTGGTGCTCTCTAGAAATCTCAGCATGAGCTGCTATAGAATACCCTCCCAGCAACAAAACCTAATCAGTAA
2401 GGCCAGCTAGACCCAATGGCTCATGCCTGTAATCCCAACACTTTGGGAGGCCAAGGTGGGAGGATGGCTTGTGTCCAGAA
2481 GTTCGAGACCAGCCTGGACAACATAGTGAGATCCTATCTCTATAAAAAATCAAAAATTAGCCAGGCATGGTGGTGCATAC
2561 CTATAGTCCTGGCTATTTGGGAGGCTGAGGCAGGAGGATTGCTTTAGCCCTGGAGGTCGAGGCTGCAGTAAGCCATGATT
2641 GCGCCACTGCACTCAGCCCGGGTGACAAAGCAAGACCCTGTCTCAGAAAAAAAGAAAATTCAAGGCCAGTTAAGACAAAA
2721 TGCTATGACTTTGAAATTCACAGAAAGAAATAACAGTTTAGATTAGGTCTTCAGGTATTCAGGATAGAGATAATCTCCTG
2801 AAAAACCTGAATTTCAGAGATTCTTAGACTGGCTGCCAAAGGATGAAGCTAGTGAAGGAGAAAAAGCTTAAATTCCATCT
2881 TGAGCTCTTGGATTGTGATAATACAATGATTTCATTAACTTTTCATTTCTGTATACCTGTTCATTTGGAATTTAATGCTT
2961 GACTTCTTTGTTCATTTTGGATCTAAACTTCTCTTTTCTTCCTTCCCCATTCACATCTATTAGAAGACTGCATCACCATT
3041 TCTTTGGCCCCCTTACTCTGTTGTCCTTTCCCTTTTCTTTCAGTTTTTTTAATCGCATGTCTAGTATATTAAGTCTCCAT
3121 AGCCCTCCTGATGCAGTAGACAGTGCTATGCTGTGGATATAATACCAACCAGAAATTGGCATTTATAAACCTGTTAAGAG
3201 ACTTTAAGCATGCTTCAAGAGGCAGTTGACCCACTGGAATTTCTATAAGGCTGGTACCCTTCCCAGAGTTACAGAATCTT
3281 AGGTGCCGTCTCTAGTCTGTGAGGGAGGAACTCCCAGCATCCCCATTGCCCACAAATGGAATCCTCACTGTATCCACTAG
3361 GAGATTAGAAATTAAGGTTTCTTCACTACTTCTATGGTAGGGTTGTCTGAAATTCCCTTTCAGGCTGTGGGTACTGGTCT
3441 TGGGTTCTAGTCATAAGGGGTTCCTTATAAGGAGCAGGCGGAGGGGAGTACACTTTCATGTGATTTAATTTTGATCCTGC
3521 CCTCTCCAGCTGCTCCTTCAAAAGATACATCAAAAGATAGAAACTCTGGGCTGGGCACAGTGGCTCACACACTTTGGGAG
3601 GCCAAGCGGGGGTGCAGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAATGTGGTGAAACCCCATCTCTACTAA
3681 AAATACAAAAATTAGCTGGGCGTGGTGGTGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTG
3761 AACCCAGGAGGCGGAGGTTGCAGTGAGCCAAGATGGCGCCATTGCACTCCAGCCTGGGCGACAAGAGCAAAACTCCGTCT
3841 CAAAAAAAAAAAAAAGATACAAAGTCTGCATTTGATATAATGCCTTAATTACTGGGTCTACAATTAATGTTGACTGTTTT
3921 AGATTGTAAGCTCCTGGAGAGCAGTATTGCTGTAGTAGGAATGTTTTAACAGTGTCATATGAAAAAGAACAAAATAAATA
4001 TTTTGATTTTGTGATTCTAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aguGUUCACUUCAUCACCCu 5'
             |::|   :||:||||| 
Target 5' agcCGGGCATGGTGGTGGGc 3'
642 - 661 133.00 -16.30
2
miRNA  3' aguGUUCACUU-----C--AUCACCCu 5'
             :||| |||     |  |:||||| 
Target 5' agcTAAG-GAAATATTGCCTGGTGGGt 3'
1325 - 1350 126.00 -10.50
3
miRNA  3' agUGUUC-ACUUC-AUCACccu 5'
            | |:| ||||| |||||   
Target 5' ccAAAGGATGAAGCTAGTGaag 3'
2836 - 2857 122.00 -10.52
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30475795 11 COSMIC
COSN24383056 16 COSMIC
COSN30505025 17 COSMIC
COSN14366361 28 COSMIC
COSN6519752 141 COSMIC
COSN20647109 426 COSMIC
COSN22405800 466 COSMIC
COSN8293700 651 COSMIC
COSN31482231 863 COSMIC
COSN6376436 879 COSMIC
COSN17183883 1122 COSMIC
COSN2306353 1145 COSMIC
COSN21468351 1155 COSMIC
COSN30539805 1166 COSMIC
COSN30010226 1170 COSMIC
COSN1372129 1187 COSMIC
COSN31482274 1389 COSMIC
COSN26573280 1440 COSMIC
COSN2514655 1447 COSMIC
COSN28640563 1717 COSMIC
COSN31589557 1921 COSMIC
COSN20871155 2204 COSMIC
COSN14494824 2267 COSMIC
COSN31555906 2383 COSMIC
COSN28415188 2602 COSMIC
COSN31528233 2904 COSMIC
COSN6376437 2917 COSMIC
COSN6376438 2921 COSMIC
COSN8519830 2958 COSMIC
COSN31572121 2966 COSMIC
COSN31515933 3018 COSMIC
COSN30539177 3774 COSMIC
COSN32061551 3856 COSMIC
COSN31485751 3967 COSMIC
COSN26577016 3968 COSMIC
COSN19492791 3988 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs776350156 7 dbSNP
rs764916976 8 dbSNP
rs761688235 9 dbSNP
rs750345035 11 dbSNP
rs573450155 18 dbSNP
rs1343495483 21 dbSNP
rs1479427988 21 dbSNP
rs765978228 23 dbSNP
rs1381357956 26 dbSNP
rs1454089246 27 dbSNP
rs751182830 28 dbSNP
rs538932235 29 dbSNP
rs752491095 30 dbSNP
rs777337410 33 dbSNP
rs1415112916 37 dbSNP
rs1026798258 40 dbSNP
rs34812385 40 dbSNP
rs1328197859 50 dbSNP
rs539215469 57 dbSNP
rs188537312 60 dbSNP
rs547031001 62 dbSNP
rs916583271 66 dbSNP
rs550882798 68 dbSNP
rs575997625 69 dbSNP
rs1367777726 73 dbSNP
rs55654647 74 dbSNP
rs544662898 78 dbSNP
rs1443972232 96 dbSNP
rs569040181 98 dbSNP
rs561078456 106 dbSNP
rs868693572 107 dbSNP
rs1163827997 108 dbSNP
rs1192612334 108 dbSNP
rs1391514324 108 dbSNP
rs1421230163 108 dbSNP
rs1473700922 108 dbSNP
rs1477963651 108 dbSNP
rs201755977 108 dbSNP
rs371477044 108 dbSNP
rs878930609 108 dbSNP
rs879000254 108 dbSNP
rs141096367 110 dbSNP
rs982349744 112 dbSNP
rs924200048 115 dbSNP
rs1450600313 116 dbSNP
rs1453072473 120 dbSNP
rs1285907890 121 dbSNP
rs935487898 137 dbSNP
rs1053941528 139 dbSNP
rs768996560 139 dbSNP
rs57266996 140 dbSNP
rs866644305 141 dbSNP
rs1331816949 154 dbSNP
rs1325545919 156 dbSNP
rs1407039136 158 dbSNP
rs1397979934 162 dbSNP
rs1169840058 164 dbSNP
rs1376801892 169 dbSNP
rs1227822742 171 dbSNP
rs1465990788 193 dbSNP
rs1273872660 209 dbSNP
rs1189166263 223 dbSNP
rs1320086742 225 dbSNP
rs1246796073 243 dbSNP
rs149617740 245 dbSNP
rs540333576 250 dbSNP
rs1049547273 254 dbSNP
rs1199792686 276 dbSNP
rs889420707 280 dbSNP
rs1008317098 298 dbSNP
rs1019500007 301 dbSNP
rs181386016 304 dbSNP
rs185791269 312 dbSNP
rs551143819 314 dbSNP
rs1236239925 321 dbSNP
rs554263029 327 dbSNP
rs1376224936 330 dbSNP
rs897044466 334 dbSNP
rs994073972 349 dbSNP
rs1423801877 354 dbSNP
rs115556987 367 dbSNP
rs1173622001 367 dbSNP
rs1168157012 379 dbSNP
rs952586419 381 dbSNP
rs1425383055 382 dbSNP
rs1173937099 385 dbSNP
rs766594560 385 dbSNP
rs1379134852 390 dbSNP
rs1024144739 391 dbSNP
rs1459427901 392 dbSNP
rs1236111618 398 dbSNP
rs56267992 407 dbSNP
rs1209809214 416 dbSNP
rs530672197 428 dbSNP
rs1443326839 433 dbSNP
rs566426044 444 dbSNP
rs1238231564 445 dbSNP
rs1353162179 469 dbSNP
rs778809559 472 dbSNP
rs1240802483 473 dbSNP
rs1378957719 476 dbSNP
rs550560387 480 dbSNP
rs982537214 483 dbSNP
rs567117885 491 dbSNP
rs748444118 497 dbSNP
rs1300896000 501 dbSNP
rs1447065257 503 dbSNP
rs529821020 510 dbSNP
rs1447287714 526 dbSNP
rs1804960 534 dbSNP
rs935558410 538 dbSNP
rs1270661762 545 dbSNP
rs1342501794 548 dbSNP
rs1158674331 551 dbSNP
rs1442122185 552 dbSNP
rs546407769 558 dbSNP
rs1412320357 578 dbSNP
rs1277834900 587 dbSNP
rs1473364356 588 dbSNP
rs1239574564 593 dbSNP
rs191115659 595 dbSNP
rs772633339 597 dbSNP
rs1286854585 599 dbSNP
rs1202565380 605 dbSNP
rs533882214 606 dbSNP
rs1319971617 611 dbSNP
rs915409941 615 dbSNP
rs566559110 616 dbSNP
rs1379699512 618 dbSNP
rs1294825895 619 dbSNP
rs1397760387 623 dbSNP
rs932143006 626 dbSNP
rs1049474109 630 dbSNP
rs1421047532 631 dbSNP
rs539275045 636 dbSNP
rs1265949769 640 dbSNP
rs943695341 645 dbSNP
rs1478529774 646 dbSNP
rs1416432072 647 dbSNP
rs773697823 651 dbSNP
rs1477634927 653 dbSNP
rs1264219083 654 dbSNP
rs760859733 656 dbSNP
rs1196088179 662 dbSNP
rs144315135 663 dbSNP
rs994039965 672 dbSNP
rs766339376 676 dbSNP
rs1478184846 680 dbSNP
rs1173962689 681 dbSNP
rs1422845443 682 dbSNP
rs569571389 688 dbSNP
rs1322192414 693 dbSNP
rs1048300001 704 dbSNP
rs538113125 709 dbSNP
rs1339575549 710 dbSNP
rs1298753563 713 dbSNP
rs1362332871 714 dbSNP
rs558650746 721 dbSNP
rs578229575 722 dbSNP
rs1292380850 728 dbSNP
rs1346218222 742 dbSNP
rs139028783 746 dbSNP
rs1352081121 749 dbSNP
rs1273269782 752 dbSNP
rs1344813519 755 dbSNP
rs1465477283 756 dbSNP
rs540598972 765 dbSNP
rs1288822329 768 dbSNP
rs1487561122 771 dbSNP
rs971200115 772 dbSNP
rs1216503806 777 dbSNP
rs1261920837 778 dbSNP
rs1451644056 780 dbSNP
rs1254871034 783 dbSNP
rs1200609531 786 dbSNP
rs565675588 787 dbSNP
rs1258393309 790 dbSNP
rs1031412347 795 dbSNP
rs1158952862 796 dbSNP
rs1300032812 797 dbSNP
rs554007345 797 dbSNP
rs1382115078 799 dbSNP
rs1386883016 806 dbSNP
rs1372510312 807 dbSNP
rs1329987616 822 dbSNP
rs1417853623 825 dbSNP
rs1157970561 827 dbSNP
rs1401483626 828 dbSNP
rs1300200432 832 dbSNP
rs1464749921 833 dbSNP
rs34925791 835 dbSNP
rs956730930 839 dbSNP
rs1177034649 841 dbSNP
rs536293113 847 dbSNP
rs1391598138 848 dbSNP
rs1388570920 867 dbSNP
rs1321857046 868 dbSNP
rs1330702702 871 dbSNP
rs989692775 872 dbSNP
rs752548084 876 dbSNP
rs1457221014 877 dbSNP
rs1238587439 885 dbSNP
rs1482134901 890 dbSNP
rs1443392116 897 dbSNP
rs915506596 898 dbSNP
rs180981766 899 dbSNP
rs1240111569 903 dbSNP
rs1306365600 907 dbSNP
rs34033555 909 dbSNP
rs986723765 910 dbSNP
rs1378232878 911 dbSNP
rs372971520 920 dbSNP
rs35140377 921 dbSNP
rs912090958 933 dbSNP
rs1293112564 936 dbSNP
rs1401932512 936 dbSNP
rs1303714479 937 dbSNP
rs376563210 941 dbSNP
rs1419058977 959 dbSNP
rs768808600 962 dbSNP
rs764172679 964 dbSNP
rs1356462131 965 dbSNP
rs1158073994 973 dbSNP
rs1439044487 975 dbSNP
rs772051803 986 dbSNP
rs1380888094 997 dbSNP
rs1183872962 1000 dbSNP
rs1211065232 1005 dbSNP
rs544808615 1005 dbSNP
rs1255211457 1010 dbSNP
rs1264827126 1011 dbSNP
rs535472847 1020 dbSNP
rs929651856 1023 dbSNP
rs1215207346 1030 dbSNP
rs1353776603 1038 dbSNP
rs1281840113 1040 dbSNP
rs1243252978 1044 dbSNP
rs762100748 1047 dbSNP
rs1313810380 1052 dbSNP
rs1048269271 1057 dbSNP
rs1338660075 1069 dbSNP
rs1239855127 1072 dbSNP
rs888381238 1077 dbSNP
rs1387214878 1095 dbSNP
rs1012141340 1099 dbSNP
rs1367687893 1106 dbSNP
rs757174501 1109 dbSNP
rs1475999791 1115 dbSNP
rs1260639577 1118 dbSNP
rs1459538679 1119 dbSNP
rs1045289479 1123 dbSNP
rs1161469322 1140 dbSNP
rs906401410 1145 dbSNP
rs1266437993 1150 dbSNP
rs1390089877 1150 dbSNP
rs1004034231 1155 dbSNP
rs564698667 1156 dbSNP
rs1277864876 1179 dbSNP
rs1400830032 1195 dbSNP
rs1333580593 1205 dbSNP
rs1375207498 1221 dbSNP
rs41280225 1227 dbSNP
rs956660729 1230 dbSNP
rs1314101858 1233 dbSNP
rs1342711248 1235 dbSNP
rs1010927350 1238 dbSNP
rs1169524399 1242 dbSNP
rs544153168 1248 dbSNP
rs1475504806 1260 dbSNP
rs1243372872 1261 dbSNP
rs561217000 1262 dbSNP
rs1450509576 1268 dbSNP
rs953593346 1283 dbSNP
rs1216080157 1287 dbSNP
rs569792695 1302 dbSNP
rs1355039460 1310 dbSNP
rs56165803 1314 dbSNP
rs1198930674 1326 dbSNP
rs1341676804 1327 dbSNP
rs373224894 1343 dbSNP
rs1273186574 1344 dbSNP
rs1232676192 1357 dbSNP
rs538024354 1362 dbSNP
rs1326576492 1375 dbSNP
rs912043343 1394 dbSNP
rs774244557 1400 dbSNP
rs546567758 1407 dbSNP
rs976870921 1409 dbSNP
rs566615349 1414 dbSNP
rs763413689 1414 dbSNP
rs1256784931 1421 dbSNP
rs1425427111 1422 dbSNP
rs1185324322 1425 dbSNP
rs1237977896 1427 dbSNP
rs1368008840 1441 dbSNP
rs918348613 1445 dbSNP
rs929620577 1451 dbSNP
rs186387446 1459 dbSNP
rs1345815889 1464 dbSNP
rs142214837 1465 dbSNP
rs1236433951 1474 dbSNP
rs909579882 1477 dbSNP
rs1308407330 1479 dbSNP
rs1398324869 1480 dbSNP
rs779675188 1483 dbSNP
rs947958681 1486 dbSNP
rs575845082 1488 dbSNP
rs1045030139 1490 dbSNP
rs770216696 1491 dbSNP
rs906320042 1495 dbSNP
rs939206813 1498 dbSNP
rs543260192 1500 dbSNP
rs1380267670 1501 dbSNP
rs1178257705 1502 dbSNP
rs1471393277 1507 dbSNP
rs892574979 1509 dbSNP
rs1209701908 1515 dbSNP
rs1486093904 1516 dbSNP
rs1282604068 1520 dbSNP
rs146388664 1521 dbSNP
rs1353053425 1523 dbSNP
rs1351774873 1525 dbSNP
rs1022295927 1537 dbSNP
rs889158952 1542 dbSNP
rs1279734230 1543 dbSNP
rs752106441 1551 dbSNP
rs1446860516 1556 dbSNP
rs1315611600 1557 dbSNP
rs1008183513 1569 dbSNP
rs1417375445 1570 dbSNP
rs1019199265 1574 dbSNP
rs560956017 1594 dbSNP
rs966580915 1601 dbSNP
rs1256436137 1606 dbSNP
rs1402894148 1618 dbSNP
rs972275797 1621 dbSNP
rs1026463968 1637 dbSNP
rs1484093331 1640 dbSNP
rs1259939682 1642 dbSNP
rs951119922 1643 dbSNP
rs983871113 1652 dbSNP
rs909550510 1658 dbSNP
rs947748922 1660 dbSNP
rs1287502332 1677 dbSNP
rs981062307 1682 dbSNP
rs143552993 1686 dbSNP
rs1488674443 1687 dbSNP
rs1294807169 1690 dbSNP
rs1397742093 1702 dbSNP
rs1339294363 1703 dbSNP
rs1195849547 1708 dbSNP
rs538551978 1714 dbSNP
rs1433538809 1717 dbSNP
rs927918399 1723 dbSNP
rs1164669733 1729 dbSNP
rs1052251404 1731 dbSNP
rs1420472067 1733 dbSNP
rs1168803686 1735 dbSNP
rs1477583377 1747 dbSNP
rs554991793 1754 dbSNP
rs1188312192 1765 dbSNP
rs1487526687 1766 dbSNP
rs1244959194 1767 dbSNP
rs1212975139 1775 dbSNP
rs1468800360 1776 dbSNP
rs892334610 1780 dbSNP
rs139543815 1782 dbSNP
rs1379775828 1783 dbSNP
rs1464843428 1785 dbSNP
rs767988553 1790 dbSNP
rs1302803075 1792 dbSNP
rs1361690853 1793 dbSNP
rs1325906902 1806 dbSNP
rs1442200002 1811 dbSNP
rs1397154986 1815 dbSNP
rs1329665529 1818 dbSNP
rs1400084726 1824 dbSNP
rs1373892822 1825 dbSNP
rs1043834695 1826 dbSNP
rs533978084 1828 dbSNP
rs1431569915 1834 dbSNP
rs1424542144 1842 dbSNP
rs889079602 1845 dbSNP
rs1299436531 1850 dbSNP
rs1007569827 1854 dbSNP
rs772405272 1860 dbSNP
rs1254692601 1863 dbSNP
rs902074923 1872 dbSNP
rs553704326 1873 dbSNP
rs1480175077 1875 dbSNP
rs994183066 1880 dbSNP
rs1206182772 1884 dbSNP
rs1309941103 1885 dbSNP
rs1026431486 1890 dbSNP
rs1230739382 1891 dbSNP
rs1373776693 1894 dbSNP
rs1307664357 1896 dbSNP
rs114438051 1904 dbSNP
rs1354252324 1910 dbSNP
rs1300184160 1918 dbSNP
rs1464672800 1920 dbSNP
rs983796161 1964 dbSNP
rs1016648074 1988 dbSNP
rs969431830 2000 dbSNP
rs1396866200 2003 dbSNP
rs1487987784 2009 dbSNP
rs1418357249 2035 dbSNP
rs747502606 2036 dbSNP
rs980484134 2041 dbSNP
rs1482041131 2044 dbSNP
rs927646220 2048 dbSNP
rs1192045994 2062 dbSNP
rs1349387362 2063 dbSNP
rs939272140 2063 dbSNP
rs1238954414 2074 dbSNP
rs545858810 2101 dbSNP
rs988092764 2113 dbSNP
rs752219867 2114 dbSNP
rs558352779 2121 dbSNP
rs913696488 2122 dbSNP
rs1431836623 2128 dbSNP
rs1355110735 2147 dbSNP
rs946538120 2154 dbSNP
rs1175714200 2158 dbSNP
rs1381491640 2169 dbSNP
rs1287794842 2174 dbSNP
rs1422127121 2177 dbSNP
rs540351873 2184 dbSNP
rs1157348580 2192 dbSNP
rs10513202 2207 dbSNP
rs776591684 2214 dbSNP
rs1358701527 2216 dbSNP
rs1156753196 2218 dbSNP
rs1429355567 2226 dbSNP
rs1452899942 2227 dbSNP
rs910655969 2229 dbSNP
rs150651053 2234 dbSNP
rs561070841 2235 dbSNP
rs765625154 2251 dbSNP
rs1369196515 2256 dbSNP
rs1256423121 2260 dbSNP
rs532210544 2261 dbSNP
rs10759637 2272 dbSNP
rs1260323488 2275 dbSNP
rs901874022 2287 dbSNP
rs762879069 2292 dbSNP
rs1377353663 2294 dbSNP
rs1243132572 2315 dbSNP
rs1334598683 2315 dbSNP
rs1294211528 2319 dbSNP
rs993709647 2322 dbSNP
rs1338540361 2325 dbSNP
rs191190540 2325 dbSNP
rs1242283820 2327 dbSNP
rs1381609073 2331 dbSNP
rs1385629255 2333 dbSNP
rs1290531040 2334 dbSNP
rs764007127 2337 dbSNP
rs1459728318 2339 dbSNP
rs560147282 2343 dbSNP
rs1416889569 2346 dbSNP
rs532258438 2349 dbSNP
rs1047970733 2354 dbSNP
rs1370864909 2357 dbSNP
rs1191901558 2362 dbSNP
rs1447059518 2363 dbSNP
rs552273046 2365 dbSNP
rs1222352111 2375 dbSNP
rs569178111 2379 dbSNP
rs1468325684 2382 dbSNP
rs374602247 2384 dbSNP
rs1267463757 2385 dbSNP
rs1316254463 2398 dbSNP
rs1487595152 2402 dbSNP
rs1228300675 2403 dbSNP
rs529947143 2417 dbSNP
rs1006359497 2420 dbSNP
rs1239242608 2435 dbSNP
rs1326278523 2438 dbSNP
rs757154425 2439 dbSNP
rs1393943604 2442 dbSNP
rs1166949817 2445 dbSNP
rs1177335903 2449 dbSNP
rs1374229439 2463 dbSNP
rs1192325431 2465 dbSNP
rs1454185451 2469 dbSNP
rs1380182226 2475 dbSNP
rs1399620718 2479 dbSNP
rs767421922 2482 dbSNP
rs749965812 2485 dbSNP
rs756865590 2486 dbSNP
rs562547126 2489 dbSNP
rs1273090962 2490 dbSNP
rs1232018751 2507 dbSNP
rs779732387 2509 dbSNP
rs753459884 2512 dbSNP
rs988020992 2517 dbSNP
rs1327772242 2523 dbSNP
rs1448660819 2524 dbSNP
rs913830876 2530 dbSNP
rs183022238 2534 dbSNP
rs41280227 2538 dbSNP
rs1396256511 2539 dbSNP
rs778133638 2551 dbSNP
rs1228978046 2555 dbSNP
rs1468983681 2559 dbSNP
rs747342873 2571 dbSNP
rs1182814696 2574 dbSNP
rs1315011423 2581 dbSNP
rs555375835 2593 dbSNP
rs1213355446 2603 dbSNP
rs568664259 2609 dbSNP
rs1040898077 2615 dbSNP
rs139733189 2619 dbSNP
rs771349300 2620 dbSNP
rs547403419 2623 dbSNP
rs1047938180 2626 dbSNP
rs1337206930 2628 dbSNP
rs781722505 2638 dbSNP
rs1310671915 2639 dbSNP
rs1473443160 2643 dbSNP
rs888048566 2644 dbSNP
rs1176080413 2645 dbSNP
rs566490348 2653 dbSNP
rs1006454401 2654 dbSNP
rs570484659 2660 dbSNP
rs533740563 2661 dbSNP
rs1471343254 2671 dbSNP
rs12338803 2676 dbSNP
rs1187491021 2678 dbSNP
rs1466999567 2680 dbSNP
rs1035189097 2684 dbSNP
rs1259637444 2687 dbSNP
rs1353694622 2687 dbSNP
rs960331509 2687 dbSNP
rs1448755053 2694 dbSNP
rs1315017678 2723 dbSNP
rs1283440931 2732 dbSNP
rs1224182936 2735 dbSNP
rs1330926123 2742 dbSNP
rs1291124418 2746 dbSNP
rs1232227310 2748 dbSNP
rs752679830 2748 dbSNP
rs796340430 2750 dbSNP
rs1429276643 2752 dbSNP
rs1345160539 2754 dbSNP
rs1377097740 2758 dbSNP
rs775669406 2758 dbSNP
rs1232706967 2769 dbSNP
rs570544881 2774 dbSNP
rs1164498919 2780 dbSNP
rs377531557 2783 dbSNP
rs1475632080 2787 dbSNP
rs374238390 2791 dbSNP
rs1184902779 2792 dbSNP
rs1485573970 2794 dbSNP
rs576474661 2808 dbSNP
rs7032466 2809 dbSNP
rs768940219 2826 dbSNP
rs1272823934 2827 dbSNP
rs910383181 2828 dbSNP
rs964905484 2830 dbSNP
rs368109125 2833 dbSNP
rs574651338 2843 dbSNP
rs923364015 2857 dbSNP
rs1212340859 2858 dbSNP
rs1360656521 2861 dbSNP
rs1271290894 2880 dbSNP
rs929285415 2896 dbSNP
rs1325604486 2900 dbSNP
rs1462267253 2902 dbSNP
rs983400182 2907 dbSNP
rs1236183664 2911 dbSNP
rs539268624 2930 dbSNP
rs1420228247 2933 dbSNP
rs1186526837 2934 dbSNP
rs1451197537 2938 dbSNP
rs1250939844 2943 dbSNP
rs1423918672 2948 dbSNP
rs774019821 2949 dbSNP
rs1212878828 2952 dbSNP
rs1468731000 2953 dbSNP
rs761663988 2954 dbSNP
rs540496746 2958 dbSNP
rs187518939 2960 dbSNP
rs371029638 2963 dbSNP
rs905995349 2969 dbSNP
rs938860420 2974 dbSNP
rs1418580461 2983 dbSNP
rs1231301395 2986 dbSNP
rs1414772998 2988 dbSNP
rs545799686 2990 dbSNP
rs1473985724 2994 dbSNP
rs1369484518 2995 dbSNP
rs770089023 2999 dbSNP
rs1303289240 3000 dbSNP
rs190070889 3003 dbSNP
rs1056192047 3004 dbSNP
rs11556503 3036 dbSNP
rs1414260815 3039 dbSNP
rs1298939213 3048 dbSNP
rs896217134 3049 dbSNP
rs1342443613 3051 dbSNP
rs1009347540 3057 dbSNP
rs531431588 3062 dbSNP
rs1269801456 3066 dbSNP
rs1180545018 3071 dbSNP
rs1269130971 3073 dbSNP
rs1175144288 3084 dbSNP
rs1480085290 3084 dbSNP
rs1251498820 3085 dbSNP
rs75939479 3095 dbSNP
rs903559253 3096 dbSNP
rs183316838 3097 dbSNP
rs1314318287 3107 dbSNP
rs1017947895 3108 dbSNP
rs1391068852 3109 dbSNP
rs1374380060 3116 dbSNP
rs527999206 3121 dbSNP
rs976339194 3131 dbSNP
rs1374919793 3135 dbSNP
rs547713530 3139 dbSNP
rs1172952511 3143 dbSNP
rs1217974752 3145 dbSNP
rs1030145846 3147 dbSNP
rs1156719914 3151 dbSNP
rs750353101 3152 dbSNP
rs1418267494 3156 dbSNP
rs950791745 3160 dbSNP
rs187517079 3163 dbSNP
rs1484404938 3165 dbSNP
rs1190642785 3166 dbSNP
rs1212250028 3171 dbSNP
rs1484500774 3173 dbSNP
rs1259454547 3177 dbSNP
rs983537292 3190 dbSNP
rs539491402 3197 dbSNP
rs1422931080 3199 dbSNP
rs760218433 3203 dbSNP
rs1290515857 3206 dbSNP
rs942040737 3213 dbSNP
rs1354927447 3220 dbSNP
rs765907253 3226 dbSNP
rs41280229 3230 dbSNP
rs1404329785 3235 dbSNP
rs1287038424 3236 dbSNP
rs1452879579 3241 dbSNP
rs1412356320 3244 dbSNP
rs1160938490 3246 dbSNP
rs542967585 3258 dbSNP
rs570052798 3261 dbSNP
rs1057480266 3266 dbSNP
rs1425016770 3276 dbSNP
rs778563781 3278 dbSNP
rs892002244 3281 dbSNP
rs10981707 3282 dbSNP
rs572932606 3284 dbSNP
rs386737770 3287 dbSNP
rs763821725 3287 dbSNP
rs10981708 3288 dbSNP
rs371573449 3288 dbSNP
rs10981709 3289 dbSNP
rs192654273 3297 dbSNP
rs533953876 3298 dbSNP
rs1294115357 3300 dbSNP
rs1273505622 3307 dbSNP
rs1324760743 3325 dbSNP
rs1000954565 3327 dbSNP
rs1017498182 3330 dbSNP
rs1288756951 3334 dbSNP
rs1322249489 3336 dbSNP
rs1355264808 3339 dbSNP
rs900399307 3343 dbSNP
rs565079839 3347 dbSNP
rs1163463886 3356 dbSNP
rs757632471 3377 dbSNP
rs781586711 3386 dbSNP
rs1202784432 3393 dbSNP
rs1370776647 3395 dbSNP
rs1193127590 3402 dbSNP
rs532495189 3403 dbSNP
rs1283135423 3410 dbSNP
rs184495650 3418 dbSNP
rs1468306166 3425 dbSNP
rs1200539470 3437 dbSNP
rs1274111093 3438 dbSNP
rs1211786494 3439 dbSNP
rs1337540886 3441 dbSNP
rs1250787018 3448 dbSNP
rs1226647786 3451 dbSNP
rs1365896130 3461 dbSNP
rs187734512 3462 dbSNP
rs565090581 3469 dbSNP
rs1453547543 3475 dbSNP
rs192693896 3480 dbSNP
rs983462308 3481 dbSNP
rs1016313604 3486 dbSNP
rs544644310 3491 dbSNP
rs562464825 3501 dbSNP
rs1143245 3503 dbSNP
rs1393731821 3523 dbSNP
rs1158011532 3533 dbSNP
rs1166850177 3534 dbSNP
rs980489667 3541 dbSNP
rs1392629388 3546 dbSNP
rs1172306885 3559 dbSNP
rs927343003 3575 dbSNP
rs1324099668 3599 dbSNP
rs879291398 3602 dbSNP
rs1201314134 3604 dbSNP
rs1436255086 3605 dbSNP
rs879691683 3606 dbSNP
rs1250048052 3607 dbSNP
rs111976327 3608 dbSNP
rs993118836 3609 dbSNP
rs1275179214 3610 dbSNP
rs913363203 3612 dbSNP
rs879785952 3613 dbSNP
rs1333670883 3616 dbSNP
rs1327747811 3617 dbSNP
rs774831566 3620 dbSNP
rs1371794384 3624 dbSNP
rs1375253895 3625 dbSNP
rs946204666 3629 dbSNP
rs561606511 3637 dbSNP
rs1426356255 3639 dbSNP
rs780291390 3644 dbSNP
rs1042132459 3649 dbSNP
rs1363500547 3653 dbSNP
rs1183159191 3654 dbSNP
rs1484080588 3684 dbSNP
rs925044164 3687 dbSNP
rs1208667773 3689 dbSNP
rs1278512628 3691 dbSNP
rs1356394945 3698 dbSNP
rs1211314656 3699 dbSNP
rs1270825788 3702 dbSNP
rs1441810683 3702 dbSNP
rs10123211 3703 dbSNP
rs1039097356 3706 dbSNP
rs1348266465 3708 dbSNP
rs1198972824 3710 dbSNP
rs1278593065 3710 dbSNP
rs1228557789 3711 dbSNP
rs1239957831 3712 dbSNP
rs1351817887 3714 dbSNP
rs1417309965 3722 dbSNP
rs1413601915 3730 dbSNP
rs1229439096 3733 dbSNP
rs1181001982 3734 dbSNP
rs1369166818 3735 dbSNP
rs1473805782 3739 dbSNP
rs1160199750 3740 dbSNP
rs1473667805 3744 dbSNP
rs541219541 3750 dbSNP
rs1473158424 3756 dbSNP
rs997843331 3757 dbSNP
rs1300044525 3759 dbSNP
rs1267201189 3766 dbSNP
rs1208995010 3767 dbSNP
rs564489353 3774 dbSNP
rs1291037571 3778 dbSNP
rs533402585 3783 dbSNP
rs1394776777 3790 dbSNP
rs549770175 3791 dbSNP
rs1286476556 3799 dbSNP
rs1335418196 3803 dbSNP
rs931649738 3809 dbSNP
rs1429169694 3816 dbSNP
rs1344996440 3818 dbSNP
rs111495947 3820 dbSNP
rs1164472219 3821 dbSNP
rs1234543389 3822 dbSNP
rs963776332 3823 dbSNP
rs1415977325 3824 dbSNP
rs141123297 3834 dbSNP
rs1051332911 3835 dbSNP
rs566750431 3837 dbSNP
rs1218852129 3838 dbSNP
rs1189036072 3839 dbSNP
rs1034760396 3842 dbSNP
rs1291343723 3842 dbSNP
rs1321809342 3842 dbSNP
rs1340144265 3842 dbSNP
rs1466079569 3842 dbSNP
rs1213358419 3843 dbSNP
rs1259831670 3857 dbSNP
rs1479518550 3859 dbSNP
rs960070141 3860 dbSNP
rs1195210724 3861 dbSNP
rs1256714411 3863 dbSNP
rs993045078 3865 dbSNP
rs1325489771 3877 dbSNP
rs1437392028 3878 dbSNP
rs913500337 3882 dbSNP
rs967516457 3897 dbSNP
rs1409433832 3900 dbSNP
rs978907355 3901 dbSNP
rs926172074 3903 dbSNP
rs1478309548 3916 dbSNP
rs936411740 3917 dbSNP
rs1038823213 3920 dbSNP
rs184182939 3923 dbSNP
rs529387745 3925 dbSNP
rs1488580256 3927 dbSNP
rs1248063216 3940 dbSNP
rs879250936 3941 dbSNP
rs767712540 3966 dbSNP
rs549482603 3972 dbSNP
rs933011370 3978 dbSNP
rs1051606146 3979 dbSNP
rs753127732 3988 dbSNP
rs758660180 3992 dbSNP
rs1173702877 3994 dbSNP
rs1387672972 3999 dbSNP
rs878956925 4015 dbSNP
rs1004783903 4017 dbSNP
rs753602800 4020 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aguguucacuucaUCACCCu 5'
                       |||||| 
Target 5' -----auucaaugAGUGGGa 3'
1 - 15
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM4903825
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID14_NS
Location of target site NM_001859 | 3UTR | AUCGAUUGCAGUGGGAAGUUGUUGAAGACUUGAAGACGUGAUUCCUGCUCCAAUCAUCCCUUCUUGCUCCUCUUUGUGCACGUACACACACAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000374212.4 | 3UTR | AUUCAAUGAGUGGGAAAUACAUUGUGCCUUUCUCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
83 hsa-miR-4301 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT081134 LDLR low density lipoprotein receptor 2 4
MIRT090911 ARHGEF26 Rho guanine nucleotide exchange factor 26 2 2
MIRT229436 MECP2 methyl-CpG binding protein 2 2 2
MIRT274717 CPSF6 cleavage and polyadenylation specific factor 6 2 2
MIRT350957 BACH1 BTB domain and CNC homolog 1 2 2
MIRT386722 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT446022 PEX3 peroxisomal biogenesis factor 3 2 2
MIRT481303 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 2 14
MIRT483959 ZNF354B zinc finger protein 354B 2 6
MIRT495667 TUBAL3 tubulin alpha like 3 2 2
MIRT496554 TBX15 T-box 15 2 2
MIRT497702 ARL6IP6 ADP ribosylation factor like GTPase 6 interacting protein 6 2 2
MIRT498105 RMND5A required for meiotic nuclear division 5 homolog A 2 2
MIRT512535 SEMA4D semaphorin 4D 2 2
MIRT512556 MFN2 mitofusin 2 2 6
MIRT521465 RABGAP1 RAB GTPase activating protein 1 2 6
MIRT526236 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT526743 HLA-DOB major histocompatibility complex, class II, DO beta 2 2
MIRT527578 BRD7 bromodomain containing 7 2 4
MIRT528038 WT1 Wilms tumor 1 2 2
MIRT528267 GPRIN2 G protein regulated inducer of neurite outgrowth 2 2 2
MIRT528505 HTR7 5-hydroxytryptamine receptor 7 2 4
MIRT528758 RPS27 ribosomal protein S27 2 6
MIRT528999 IPO9 importin 9 2 2
MIRT529701 MRPL30 mitochondrial ribosomal protein L30 2 2
MIRT529781 C17orf82 chromosome 17 open reading frame 82 2 2
MIRT533797 TMEM119 transmembrane protein 119 2 6
MIRT535308 PHF12 PHD finger protein 12 2 2
MIRT535917 MKL2 MKL1/myocardin like 2 2 2
MIRT544892 OSBPL1A oxysterol binding protein like 1A 2 2
MIRT555423 PPIC peptidylprolyl isomerase C 2 2
MIRT562068 KLHL15 kelch like family member 15 2 2
MIRT565623 SLC31A1 solute carrier family 31 member 1 2 2
MIRT565661 SIX1 SIX homeobox 1 2 2
MIRT570138 IL1RL2 interleukin 1 receptor like 2 2 2
MIRT571045 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT621232 LMAN1 lectin, mannose binding 1 2 2
MIRT622272 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT623844 GAN gigaxonin 2 2
MIRT626158 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT626464 CMKLR1 chemerin chemokine-like receptor 1 2 2
MIRT632087 ALDH1A2 aldehyde dehydrogenase 1 family member A2 2 2
MIRT637243 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT642710 FGFR1OP2 FGFR1 oncogene partner 2 2 2
MIRT643611 KANSL3 KAT8 regulatory NSL complex subunit 3 2 2
MIRT644270 PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 2 2
MIRT645470 SPIN3 spindlin family member 3 2 2
MIRT649193 DNPEP aspartyl aminopeptidase 2 2
MIRT650776 POP4 POP4 homolog, ribonuclease P/MRP subunit 2 2
MIRT651345 ZC2HC1C zinc finger C2HC-type containing 1C 2 2
MIRT652237 TRAPPC3L trafficking protein particle complex 3 like 2 2
MIRT652587 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT654591 PURA purine rich element binding protein A 2 2
MIRT654649 PTAFR platelet activating factor receptor 2 2
MIRT656842 KLF7 Kruppel like factor 7 2 2
MIRT657209 IKZF2 IKAROS family zinc finger 2 2 2
MIRT658513 ETV3 ETS variant 3 2 2
MIRT659448 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT668816 CYLD CYLD lysine 63 deubiquitinase 2 2
MIRT669067 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 2
MIRT677711 ELOF1 elongation factor 1 homolog 2 4
MIRT687146 PTPN12 protein tyrosine phosphatase, non-receptor type 12 2 2
MIRT698498 THOC2 THO complex 2 2 2
MIRT707930 PPP1R3D protein phosphatase 1 regulatory subunit 3D 4 2
MIRT708737 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT710031 POLL DNA polymerase lambda 2 2
MIRT712175 STK4 serine/threonine kinase 4 2 2
MIRT715297 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT716892 AGPAT6 glycerol-3-phosphate acyltransferase 4 2 2
MIRT717378 RBM41 RNA binding motif protein 41 2 2
MIRT718082 CLIC5 chloride intracellular channel 5 2 2
MIRT718721 ANKRD18A ankyrin repeat domain 18A 2 2
MIRT719152 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT719224 CAMK4 calcium/calmodulin dependent protein kinase IV 2 2
MIRT719528 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT719861 KLF2 Kruppel like factor 2 2 2
MIRT720326 CAMK2G calcium/calmodulin dependent protein kinase II gamma 2 2
MIRT721596 SREBF1 sterol regulatory element binding transcription factor 1 2 2
MIRT722020 NEBL nebulette 2 2
MIRT722484 QSOX1 quiescin sulfhydryl oxidase 1 2 2
MIRT722614 TEAD1 TEA domain transcription factor 1 2 2
MIRT723664 RPTN repetin 2 2
MIRT723939 SVOP SV2 related protein 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4301 Cisplatin 5460033 NSC119875 approved sensitive High Hepatocellular Carcinoma cell line (Hep3B, 97L)
hsa-miR-4301 Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-mir-4301 Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-mir-4301 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-4301 Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-4301 Methotrexate 126941 NSC740 approved sensitive cell line (W1)
hsa-mir-4301 Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-miR-4301 Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4301 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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