pre-miRNA Information
pre-miRNA hsa-mir-16-2   
Genomic Coordinates chr3: 160404745 - 160404825
Description Homo sapiens miR-16-2 stem-loop
Comment This entry represents a second putative hairpin precursor sequence for miR-16, located on chromosome 3 (see also MIR:MI0000070). The sequence was previously named mir-16-3 here and in references .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-16-2-3p
Sequence 53| CCAAUAUUACUGUGCUGCUUUA |74
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30477465 2 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs746992239 2 dbSNP
rs775368833 4 dbSNP
rs373202341 10 dbSNP
rs768780684 13 dbSNP
rs1341798864 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RNF44   
Synonyms -
Description ring finger protein 44
Transcript NM_014901   
Expression
Putative miRNA Targets on RNF44
3'UTR of RNF44
(miRNA target sites are highlighted)
>RNF44|NM_014901|3'UTR
   1 GGCCACGCAGCCGCCTGCCCGGGAGAACCCTGCCTGAAGCTCTGGAAACTTGTGGGTGGGGCCCAGGGAGGATGGGGAGG
  81 GAGTGGCCCAGGCCTGCCCCTTCGCTCCTGCCTGCATTTCCAGAGCTGGTGCCAGGGTCAGCCCAGCGAGGAGTCCCTGC
 161 AATAAGCCCCTGCATTTGCCAAGCTCCAAAGACTCCCTCCCTAGTCTGCCTGCCTGCCCGCCCGCCACGGAGCTGCCTGA
 241 GTGTCCCTGATCGGGTCTCCCTCCTGTGCACCCTCAGGTCCCTCCTTTTCCTGCTGGCACTGAGTGCCAGGGGTCCGCTC
 321 CCTCAGTGGGGCCGGTGGAGATCCTTGGCCCCAGGATGGGCAGACAGAGCACCATCCTGGGTCAGAAGGTCTCATGCTCT
 401 GAAATGGCGTGCCCTCTGCCCAGGTGGCACTGCCAGGTGCGTAGACAGACGGTGTCACGAGCCATTTCCTGAGCCCCAGG
 481 GCTGAATCCCCCCTCCTTGACCCCGAACAGTGAACTCAGGCAGCTGGCTCTGTGTTGGCTGCTGTGAGGGCTGAGTCTGG
 561 TTCCCTAGGGGACCCTCATCCCAGGAACAACATTCCAGCCCCACCCTCAGGCTGGAGGGCGTCCCAGCCTAATCCCGAGC
 641 TGGGGCACACGTATCCTGAGGGGCTTGGGCCATACGGGGAGAGGGAGCCCTGTGTTCCCGGTGGTTGTCCCTCCCAGGGA
 721 TGCAGCCAGACCCGTGCCCAATCTCCTCTCCCTCTGTTGTTTTGCATGAACGTGAGGAGCAGCAGTTTTTGTTCATTCAT
 801 TTGGCCCAAAATCACGTGTAGGATTTGGGGATGTGGATATTTAAGACAATTTCTTTTTTCTTTTGGTTTAATAGGGGCGG
 881 GTATAGGGACCAACTGGGACCGAGTGCCCAGGGGGCCGAGCACGGTCATGCTGGCCGGCCTGCATGCATGCGTGTGCCGG
 961 GCTGGGCTGGGCGGCCGGCGGTCGTGGGGCAGGGTTGGGGGTCTGTGCTCAGCTGATAACTGCCATGCACTGTACTGCAC
1041 ACGTCCCTAGAGCCTACCGGGACCCGACGCTTTTCAGGGCATTTCTCCCTCCAGCCAGGGCCCAACTCCCACCTGCCTGG
1121 GCGAATCTCCTCCAAGGAAGTCCCAGGAGGATGGGGACCAGGAAGGCTGTGGACCCCCATCTCCAGGGGGCCTTCCCAGC
1201 CTGATCCCTGTCCTCCAAGTTCTGGAGGAGGCCGCTGTAGGGTCTGGCTGAGCTTCCCACCCACTTTCCCTGGTCCCAAT
1281 CCTTTCTTGTCCTATACCCAGCTGGGGTTGCTGCCCTGAACGAACTGCGTGTGGGGCCGGCACATCCTAGCAGGCAGCCC
1361 CTGGCGCCTGCTGCCTCAGGGATGCTCCAACCACCCTCGTTCTCCTCGCAGTGGCCCTGGCTCCCACCTCCCGCCCCAGC
1441 CTGCCGTGGGGCCCGTCAGCCTGGTCCCACCCCCATGGAGAACCCAAAGTCTTACTGTATATAACTCCAGGTGACGTTTC
1521 TATATTTATAGCAGTGTTGAAAACCCACGTGTTTTACACAGAACCACCCTCTCCAACCCCTCCCTTCCCGACCCCAACAA
1601 AACGTTTTCAAACCCCTTACAGTTCCTGGGGCAGGCGGAAACAGGCTCACAGATTGTGTGTCGGCTGCAGCAGTGATTCC
1681 AACAAGCAGCTATTGGGGGGGAAACACAGCATTTAAAAAGATCATCATTAAAAAACAAGATTTATACAACAATTACTTAG
1761 GATGTTTGTGATCTGCCGACCTTGCTATAGATGCCATGTTACCAATGATTTCCTGTGGTGGGGGCTTGCCATTGTTTACT
1841 CTCTTATTTACCAACTTCTGGCCTAGGCATGACAGTGGGCACCTTCCCCCAGCCCTGGCTGGGCCCAGCGCCTGTGTTCT
1921 GTGTTAGAAAGGTTTTATATATATATAAAATTACATATATATGTAGAAATATATGTAATTTTGGGGGCCCTGTTCCTTGC
2001 ACATTTTACAGTTACCTCATTTTTCCCATGTATGTATTTGAGAAAATGCTAATATATAGAGAAAAAAATGGTTCTTAAAG
2081 CTTAAATGTGTGGTTTTTTCCATTCCATGGGATTCACATTGGTTTGTAGCATTTAACATAACTAGTATGTTGTATTATAT
2161 ATATGTGTATACTGATTGAAATTTTTAACAGATTTGTACTTTTTTTAAAATGAAAGTTGCTAGTTCTGCTTGACCAAGTA
2241 GTGCAATCATTATTTTTTTTAATATTGTTGCTGATTTCAGAGGGATATTCACTAATAAATGTATGATGTATACCAACGAC
2321 CGCCCACGC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' auUUCGUCGUGU-------------CAUUAUAACc 5'
            |||:||::||              |||||||| 
Target 5' ccAAGTAGTGCAATCATTATTTTTTTTAATATTGt 3'
2234 - 2268 148.00 -8.26
2
miRNA  3' auuUCGUCGUGU-CAUUAUAACc 5'
             || | :|:| ||||| ||| 
Target 5' tgtAGAAATATATGTAATTTTGg 3'
1962 - 1984 131.00 -10.60
3
miRNA  3' auuucgucGUGUCAUUAUAACc 5'
                  :|:|| |:|:||| 
Target 5' tctatattTATAGCAGTGTTGa 3'
1519 - 1540 122.00 -7.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30135719 7 COSMIC
COSN30490287 11 COSMIC
COSN1312423 14 COSMIC
COSN30148212 21 COSMIC
COSN30538914 29 COSMIC
COSN26648460 60 COSMIC
COSN26992495 70 COSMIC
COSN30138464 111 COSMIC
COSN28190495 162 COSMIC
COSN30541227 216 COSMIC
COSN1312422 253 COSMIC
COSN31533241 276 COSMIC
COSN31490154 320 COSMIC
COSN31513597 321 COSMIC
COSN31522611 370 COSMIC
COSN5159721 645 COSMIC
COSN5073293 792 COSMIC
COSN31610935 855 COSMIC
COSN6284784 879 COSMIC
COSN26676964 931 COSMIC
COSN26586340 983 COSMIC
COSN26447321 1122 COSMIC
COSN18807505 1142 COSMIC
COSN17223403 1150 COSMIC
COSN20091319 1359 COSMIC
COSN28765250 1407 COSMIC
COSN16320300 1461 COSMIC
COSN31480052 1477 COSMIC
COSN30175816 1513 COSMIC
COSN26556244 1625 COSMIC
COSN26668188 1650 COSMIC
COSN31596602 1652 COSMIC
COSN28038507 1726 COSMIC
COSN26547599 1776 COSMIC
COSN25141695 1788 COSMIC
COSN29199596 1851 COSMIC
COSN16738064 1906 COSMIC
COSN24301112 1982 COSMIC
COSN26586927 2000 COSMIC
COSN31610014 2023 COSMIC
COSN31480677 2040 COSMIC
COSN31523485 2062 COSMIC
COSN31550219 2068 COSMIC
COSN31548219 2085 COSMIC
COSN31556202 2100 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1467387795 2 dbSNP
rs780716424 2 dbSNP
rs758872565 5 dbSNP
rs750889499 6 dbSNP
rs765414265 7 dbSNP
rs572175854 12 dbSNP
rs749375616 12 dbSNP
rs372022977 13 dbSNP
rs368139985 14 dbSNP
rs759349698 17 dbSNP
rs774075493 18 dbSNP
rs374762511 20 dbSNP
rs138869460 21 dbSNP
rs374922307 22 dbSNP
rs769398700 23 dbSNP
rs780066894 25 dbSNP
rs371255816 29 dbSNP
rs973204462 30 dbSNP
rs1318221165 32 dbSNP
rs1399489061 35 dbSNP
rs1410198513 36 dbSNP
rs1293885713 38 dbSNP
rs1160006737 42 dbSNP
rs1369370677 43 dbSNP
rs761056482 45 dbSNP
rs1480197632 47 dbSNP
rs781010905 48 dbSNP
rs1201944914 49 dbSNP
rs766098977 57 dbSNP
rs1219816722 58 dbSNP
rs548739971 63 dbSNP
rs1333167297 65 dbSNP
rs1445269635 68 dbSNP
rs1266369882 74 dbSNP
rs1489617223 78 dbSNP
rs963183316 79 dbSNP
rs1017119300 80 dbSNP
rs1262601541 95 dbSNP
rs1286184802 97 dbSNP
rs1195768449 98 dbSNP
rs983406388 99 dbSNP
rs1404692774 100 dbSNP
rs536576652 103 dbSNP
rs1209122873 104 dbSNP
rs569523030 105 dbSNP
rs1401240300 107 dbSNP
rs1032004229 117 dbSNP
rs57598427 118 dbSNP
rs1228229626 128 dbSNP
rs1291064311 130 dbSNP
rs1024554177 137 dbSNP
rs1323835140 139 dbSNP
rs1221970678 147 dbSNP
rs1369966887 166 dbSNP
rs1275588471 167 dbSNP
rs965830868 168 dbSNP
rs1018808086 171 dbSNP
rs1014202080 175 dbSNP
rs894510005 177 dbSNP
rs1255454812 180 dbSNP
rs1007288131 190 dbSNP
rs1182331129 193 dbSNP
rs189245469 193 dbSNP
rs1417016039 196 dbSNP
rs1034830442 207 dbSNP
rs760510643 210 dbSNP
rs890834 215 dbSNP
rs1405750341 216 dbSNP
rs546257383 219 dbSNP
rs1358022364 220 dbSNP
rs371465141 221 dbSNP
rs184546754 223 dbSNP
rs1010530456 224 dbSNP
rs879826785 227 dbSNP
rs890375152 228 dbSNP
rs1051713672 229 dbSNP
rs931621195 236 dbSNP
rs1354743199 237 dbSNP
rs921619593 238 dbSNP
rs1276622251 239 dbSNP
rs1037831542 241 dbSNP
rs561904884 243 dbSNP
rs941799750 251 dbSNP
rs114997588 252 dbSNP
rs1261069526 253 dbSNP
rs928110586 255 dbSNP
rs1177819199 256 dbSNP
rs982970923 259 dbSNP
rs1441185681 260 dbSNP
rs948250515 264 dbSNP
rs1279531636 266 dbSNP
rs951585225 271 dbSNP
rs1214067309 275 dbSNP
rs1335601680 282 dbSNP
rs917486218 283 dbSNP
rs993064099 285 dbSNP
rs1361476942 290 dbSNP
rs958676714 293 dbSNP
rs1034368868 308 dbSNP
rs1000654022 310 dbSNP
rs989618162 314 dbSNP
rs542793444 316 dbSNP
rs1335210375 317 dbSNP
rs1280823917 328 dbSNP
rs555690547 333 dbSNP
rs923972438 334 dbSNP
rs1238593825 337 dbSNP
rs1458871870 340 dbSNP
rs1196317504 356 dbSNP
rs1169261038 359 dbSNP
rs113493498 364 dbSNP
rs965966265 369 dbSNP
rs1173864221 372 dbSNP
rs1416747828 379 dbSNP
rs1464543658 380 dbSNP
rs1018902852 381 dbSNP
rs763307725 382 dbSNP
rs1449385610 383 dbSNP
rs1321974730 388 dbSNP
rs1382654210 389 dbSNP
rs1437426847 396 dbSNP
rs1276710988 397 dbSNP
rs762316264 399 dbSNP
rs985944812 405 dbSNP
rs1217940608 408 dbSNP
rs73806255 408 dbSNP
rs559533106 409 dbSNP
rs1051660632 412 dbSNP
rs1288839376 413 dbSNP
rs1241186020 414 dbSNP
rs994606959 416 dbSNP
rs1185214272 437 dbSNP
rs996111730 438 dbSNP
rs1238304550 439 dbSNP
rs189524333 440 dbSNP
rs559116072 441 dbSNP
rs1467639894 448 dbSNP
rs1276940142 450 dbSNP
rs1406203014 451 dbSNP
rs542335222 451 dbSNP
rs941732139 458 dbSNP
rs534316765 464 dbSNP
rs1399535602 479 dbSNP
rs907612179 486 dbSNP
rs769293234 488 dbSNP
rs745486976 492 dbSNP
rs948219973 494 dbSNP
rs1283408240 496 dbSNP
rs930127671 499 dbSNP
rs371032202 504 dbSNP
rs1054245600 505 dbSNP
rs1216790343 506 dbSNP
rs935448408 508 dbSNP
rs923909122 509 dbSNP
rs993013062 521 dbSNP
rs958953881 528 dbSNP
rs1368254414 530 dbSNP
rs1473295058 536 dbSNP
rs927246049 542 dbSNP
rs1358940730 544 dbSNP
rs976736801 556 dbSNP
rs1372019340 565 dbSNP
rs1362487656 567 dbSNP
rs1168742791 572 dbSNP
rs781183145 578 dbSNP
rs1394252227 579 dbSNP
rs1333353424 580 dbSNP
rs573270942 592 dbSNP
rs116766794 595 dbSNP
rs969157743 602 dbSNP
rs1352582987 603 dbSNP
rs1020353012 606 dbSNP
rs1287577042 617 dbSNP
rs1481949267 619 dbSNP
rs1010346308 620 dbSNP
rs1424204734 621 dbSNP
rs1443493875 622 dbSNP
rs1185852459 626 dbSNP
rs954502907 627 dbSNP
rs542361503 636 dbSNP
rs1175237936 637 dbSNP
rs973535465 639 dbSNP
rs961832243 644 dbSNP
rs1365611149 650 dbSNP
rs1030182203 651 dbSNP
rs996057219 655 dbSNP
rs1402912539 656 dbSNP
rs1003142910 661 dbSNP
rs900416282 662 dbSNP
rs1447062830 668 dbSNP
rs1016631780 672 dbSNP
rs376577496 675 dbSNP
rs886127741 678 dbSNP
rs1256043192 684 dbSNP
rs1346384712 690 dbSNP
rs1206067403 691 dbSNP
rs1236768792 692 dbSNP
rs770298915 699 dbSNP
rs555463364 700 dbSNP
rs373306302 705 dbSNP
rs1053970920 709 dbSNP
rs1252997055 710 dbSNP
rs1431657066 714 dbSNP
rs1322815243 716 dbSNP
rs1175504864 729 dbSNP
rs1306822438 732 dbSNP
rs1222412777 733 dbSNP
rs1168363830 734 dbSNP
rs1351964469 737 dbSNP
rs1399288931 738 dbSNP
rs935527744 741 dbSNP
rs1299660750 744 dbSNP
rs895955037 745 dbSNP
rs1365100589 746 dbSNP
rs569452105 748 dbSNP
rs1385854936 749 dbSNP
rs746947270 750 dbSNP
rs944013391 751 dbSNP
rs937549425 754 dbSNP
rs1256654461 763 dbSNP
rs1317829085 765 dbSNP
rs1199741739 766 dbSNP
rs1253418303 771 dbSNP
rs1403837143 772 dbSNP
rs1363115715 777 dbSNP
rs185439880 795 dbSNP
rs1268150435 796 dbSNP
rs1294754470 798 dbSNP
rs1458385417 799 dbSNP
rs749006142 803 dbSNP
rs911235379 806 dbSNP
rs370303296 808 dbSNP
rs1422907269 810 dbSNP
rs1363143148 815 dbSNP
rs979451752 816 dbSNP
rs986008698 816 dbSNP
rs920391696 825 dbSNP
rs973245521 830 dbSNP
rs1293686659 839 dbSNP
rs1366911457 841 dbSNP
rs1277015215 843 dbSNP
rs1397658884 843 dbSNP
rs1340496991 849 dbSNP
rs962208398 850 dbSNP
rs192785630 853 dbSNP
rs1221125472 860 dbSNP
rs970332870 861 dbSNP
rs1480219732 864 dbSNP
rs1265405772 865 dbSNP
rs1211709765 866 dbSNP
rs755106713 870 dbSNP
rs1012885111 873 dbSNP
rs1260591151 878 dbSNP
rs111665340 879 dbSNP
rs954783756 881 dbSNP
rs1030460481 883 dbSNP
rs1165202067 885 dbSNP
rs1386779743 886 dbSNP
rs974566870 891 dbSNP
rs1417452639 893 dbSNP
rs1297100407 896 dbSNP
rs1360554545 900 dbSNP
rs187571163 901 dbSNP
rs556406485 902 dbSNP
rs1377601434 903 dbSNP
rs1228172530 906 dbSNP
rs1316127302 914 dbSNP
rs546170390 917 dbSNP
rs780149192 918 dbSNP
rs1285436965 922 dbSNP
rs886079209 923 dbSNP
rs1025945542 924 dbSNP
rs1013248131 925 dbSNP
rs1235723850 926 dbSNP
rs1482883952 927 dbSNP
rs1343222846 930 dbSNP
rs896236327 931 dbSNP
rs1244726933 932 dbSNP
rs1437463992 933 dbSNP
rs1157636379 935 dbSNP
rs368457827 936 dbSNP
rs889769869 937 dbSNP
rs937509505 940 dbSNP
rs906048943 943 dbSNP
rs1384163955 945 dbSNP
rs1287001581 948 dbSNP
rs931332367 949 dbSNP
rs539483138 951 dbSNP
rs1038060152 952 dbSNP
rs567348348 952 dbSNP
rs947639278 958 dbSNP
rs907721453 959 dbSNP
rs756374559 972 dbSNP
rs1244781642 973 dbSNP
rs988809899 973 dbSNP
rs970470148 974 dbSNP
rs933342623 976 dbSNP
rs1238477365 977 dbSNP
rs923337348 978 dbSNP
rs974848239 979 dbSNP
rs964555418 980 dbSNP
rs1414430675 981 dbSNP
rs1261680035 983 dbSNP
rs1187177263 984 dbSNP
rs957983300 1000 dbSNP
rs1331096027 1001 dbSNP
rs1032588849 1002 dbSNP
rs765675784 1004 dbSNP
rs1273181581 1005 dbSNP
rs1366953970 1007 dbSNP
rs548953507 1008 dbSNP
rs1203432322 1009 dbSNP
rs1315980436 1012 dbSNP
rs984692181 1017 dbSNP
rs1197819485 1020 dbSNP
rs530686536 1023 dbSNP
rs1019814337 1027 dbSNP
rs1218871591 1028 dbSNP
rs1245630130 1029 dbSNP
rs145082256 1030 dbSNP
rs374254295 1032 dbSNP
rs1432170634 1033 dbSNP
rs889859249 1042 dbSNP
rs1013195613 1043 dbSNP
rs1325298776 1045 dbSNP
rs960388122 1046 dbSNP
rs1033368829 1047 dbSNP
rs1292794739 1054 dbSNP
rs1411900713 1056 dbSNP
rs1050292029 1058 dbSNP
rs116004861 1059 dbSNP
rs906001838 1063 dbSNP
rs1335905504 1065 dbSNP
rs1043623697 1066 dbSNP
rs1217881275 1068 dbSNP
rs1400345044 1069 dbSNP
rs533241249 1074 dbSNP
rs898523146 1079 dbSNP
rs1288773069 1081 dbSNP
rs780206377 1082 dbSNP
rs777332399 1087 dbSNP
rs940614499 1088 dbSNP
rs907690314 1089 dbSNP
rs892046114 1094 dbSNP
rs1374003455 1097 dbSNP
rs1053395220 1098 dbSNP
rs369109048 1105 dbSNP
rs1413391014 1109 dbSNP
rs923288067 1121 dbSNP
rs376971731 1122 dbSNP
rs540621262 1123 dbSNP
rs1328112963 1126 dbSNP
rs1242423256 1127 dbSNP
rs943458429 1129 dbSNP
rs1283352333 1134 dbSNP
rs757555440 1143 dbSNP
rs1247655919 1145 dbSNP
rs183450890 1148 dbSNP
rs949245345 1151 dbSNP
rs1257856927 1155 dbSNP
rs373002877 1159 dbSNP
rs1205079174 1165 dbSNP
rs916329663 1176 dbSNP
rs991012580 1190 dbSNP
rs1185926765 1191 dbSNP
rs1338308392 1193 dbSNP
rs1271941632 1195 dbSNP
rs752123988 1206 dbSNP
rs1378561585 1208 dbSNP
rs985026538 1210 dbSNP
rs1453218389 1211 dbSNP
rs1229955098 1212 dbSNP
rs950612893 1216 dbSNP
rs1387102008 1218 dbSNP
rs919160469 1222 dbSNP
rs1314212986 1228 dbSNP
rs978346726 1230 dbSNP
rs966967505 1233 dbSNP
rs1306560236 1234 dbSNP
rs1334543168 1237 dbSNP
rs1239227060 1238 dbSNP
rs992057893 1242 dbSNP
rs960340476 1244 dbSNP
rs1199201875 1247 dbSNP
rs1262910182 1248 dbSNP
rs1461999000 1251 dbSNP
rs777319930 1260 dbSNP
rs1019904541 1262 dbSNP
rs1418689648 1270 dbSNP
rs986945806 1272 dbSNP
rs1033319536 1279 dbSNP
rs1464511789 1282 dbSNP
rs1306324988 1286 dbSNP
rs954231635 1289 dbSNP
rs1431628639 1292 dbSNP
rs1028397595 1293 dbSNP
rs369984524 1294 dbSNP
rs1329042702 1295 dbSNP
rs1001926817 1298 dbSNP
rs996002984 1307 dbSNP
rs898456364 1313 dbSNP
rs1231724236 1314 dbSNP
rs1163447523 1318 dbSNP
rs1472081184 1320 dbSNP
rs111318493 1321 dbSNP
rs1256537855 1322 dbSNP
rs554998930 1329 dbSNP
rs764461736 1338 dbSNP
rs891992390 1339 dbSNP
rs1198775604 1341 dbSNP
rs1053341797 1344 dbSNP
rs1249089939 1347 dbSNP
rs1429990978 1350 dbSNP
rs886339140 1355 dbSNP
rs371127354 1361 dbSNP
rs542861102 1365 dbSNP
rs1206688973 1366 dbSNP
rs1462180601 1373 dbSNP
rs1299464565 1378 dbSNP
rs1388115059 1390 dbSNP
rs1311233846 1394 dbSNP
rs575757069 1398 dbSNP
rs3734169 1407 dbSNP
rs376597633 1408 dbSNP
rs376915253 1408 dbSNP
rs949213089 1408 dbSNP
rs538976720 1414 dbSNP
rs1276734969 1420 dbSNP
rs1307214447 1424 dbSNP
rs571596665 1432 dbSNP
rs909280054 1433 dbSNP
rs1221898941 1439 dbSNP
rs1049172986 1441 dbSNP
rs769549609 1443 dbSNP
rs552593282 1445 dbSNP
rs929121613 1446 dbSNP
rs1418540815 1453 dbSNP
rs59065142 1454 dbSNP
rs374225265 1455 dbSNP
rs978145947 1455 dbSNP
rs1423580017 1465 dbSNP
rs1232444771 1467 dbSNP
rs1306361393 1468 dbSNP
rs945049915 1473 dbSNP
rs567252533 1474 dbSNP
rs992008708 1475 dbSNP
rs987087047 1476 dbSNP
rs1383197363 1484 dbSNP
rs954162123 1488 dbSNP
rs939279555 1490 dbSNP
rs1028913531 1495 dbSNP
rs549024287 1497 dbSNP
rs926269950 1499 dbSNP
rs1292591274 1507 dbSNP
rs1302588928 1510 dbSNP
rs1404164651 1511 dbSNP
rs1393496801 1512 dbSNP
rs1361605801 1513 dbSNP
rs1164212091 1515 dbSNP
rs1214519036 1522 dbSNP
rs1241513545 1527 dbSNP
rs980841486 1546 dbSNP
rs1188099942 1548 dbSNP
rs1253758701 1549 dbSNP
rs1469888039 1558 dbSNP
rs967769075 1564 dbSNP
rs1022445761 1565 dbSNP
rs974163053 1567 dbSNP
rs987927321 1570 dbSNP
rs1472702185 1571 dbSNP
rs963133100 1584 dbSNP
rs956164001 1589 dbSNP
rs573655713 1590 dbSNP
rs1015701735 1593 dbSNP
rs1380948444 1596 dbSNP
rs1452204703 1596 dbSNP
rs1316061860 1600 dbSNP
rs1385256188 1603 dbSNP
rs369728173 1604 dbSNP
rs902095620 1613 dbSNP
rs1290438399 1615 dbSNP
rs1283622532 1616 dbSNP
rs1317471368 1618 dbSNP
rs1004166346 1619 dbSNP
rs1326751854 1626 dbSNP
rs1254034161 1632 dbSNP
rs1460661452 1635 dbSNP
rs1017888864 1636 dbSNP
rs781127633 1637 dbSNP
rs887805340 1638 dbSNP
rs1437405480 1642 dbSNP
rs369634046 1645 dbSNP
rs1176177031 1646 dbSNP
rs150370874 1648 dbSNP
rs1401796649 1650 dbSNP
rs894953798 1651 dbSNP
rs1404517658 1656 dbSNP
rs1351332747 1660 dbSNP
rs530633851 1662 dbSNP
rs897629311 1663 dbSNP
rs1408635675 1665 dbSNP
rs1440230358 1668 dbSNP
rs1056228427 1669 dbSNP
rs939225691 1675 dbSNP
rs926520893 1678 dbSNP
rs1042203047 1679 dbSNP
rs980737827 1681 dbSNP
rs570492370 1683 dbSNP
rs1400516043 1692 dbSNP
rs914925433 1693 dbSNP
rs1204109349 1695 dbSNP
rs1386970528 1695 dbSNP
rs987857336 1696 dbSNP
rs956448511 1697 dbSNP
rs1470909689 1698 dbSNP
rs1051310303 1702 dbSNP
rs1427861621 1702 dbSNP
rs1457508594 1702 dbSNP
rs1029458515 1703 dbSNP
rs1408435024 1708 dbSNP
rs576443668 1709 dbSNP
rs56354057 1720 dbSNP
rs1444540569 1722 dbSNP
rs966263967 1723 dbSNP
rs1344862270 1724 dbSNP
rs974634380 1725 dbSNP
rs1284996063 1726 dbSNP
rs1247235705 1735 dbSNP
rs1337131224 1736 dbSNP
rs1018253414 1737 dbSNP
rs1192440430 1739 dbSNP
rs1007826364 1740 dbSNP
rs1219677538 1744 dbSNP
rs1267494477 1746 dbSNP
rs533305653 1749 dbSNP
rs1490338613 1750 dbSNP
rs1200697866 1752 dbSNP
rs1269855728 1754 dbSNP
rs1431920991 1756 dbSNP
rs1474664839 1757 dbSNP
rs1167696813 1760 dbSNP
rs887743632 1768 dbSNP
rs1411846776 1769 dbSNP
rs1364998108 1773 dbSNP
rs908611742 1779 dbSNP
rs1027663601 1781 dbSNP
rs757685014 1796 dbSNP
rs1429814965 1801 dbSNP
rs1024277437 1805 dbSNP
rs993503209 1811 dbSNP
rs1013425577 1812 dbSNP
rs774904056 1826 dbSNP
rs1217576717 1829 dbSNP
rs559682354 1837 dbSNP
rs1275490834 1841 dbSNP
rs1224054615 1845 dbSNP
rs1435064540 1846 dbSNP
rs1056506997 1854 dbSNP
rs1033623102 1856 dbSNP
rs1323043274 1858 dbSNP
rs1001107541 1859 dbSNP
rs1181911428 1864 dbSNP
rs903721441 1867 dbSNP
rs939170029 1869 dbSNP
rs1425450816 1871 dbSNP
rs1165510189 1886 dbSNP
rs1382758034 1888 dbSNP
rs1436202484 1899 dbSNP
rs1327909381 1903 dbSNP
rs370259202 1906 dbSNP
rs1042127708 1909 dbSNP
rs1009324391 1910 dbSNP
rs759319674 1916 dbSNP
rs890773666 1931 dbSNP
rs1173455177 1932 dbSNP
rs1415796067 1933 dbSNP
rs776355644 1934 dbSNP
rs1045356800 1941 dbSNP
rs946663607 1943 dbSNP
rs1202139530 1948 dbSNP
rs1242841059 1948 dbSNP
rs535686438 1948 dbSNP
rs1447643838 1954 dbSNP
rs1249748945 1955 dbSNP
rs921512617 1958 dbSNP
rs1188975448 1960 dbSNP
rs1390715916 1961 dbSNP
rs1052099566 1972 dbSNP
rs1335834014 1973 dbSNP
rs1038649621 1975 dbSNP
rs916770958 1978 dbSNP
rs1304232205 1979 dbSNP
rs1334617412 1984 dbSNP
rs1238982249 1986 dbSNP
rs935019974 1992 dbSNP
rs1280690809 1995 dbSNP
rs1237142345 1997 dbSNP
rs1202238696 1999 dbSNP
rs562712276 1999 dbSNP
rs1262849619 2008 dbSNP
rs1461945568 2009 dbSNP
rs1208346688 2016 dbSNP
rs908717401 2018 dbSNP
rs982804614 2024 dbSNP
rs1437367027 2029 dbSNP
rs1182580273 2030 dbSNP
rs1314133671 2032 dbSNP
rs1414178002 2038 dbSNP
rs922331867 2038 dbSNP
rs1279506711 2042 dbSNP
rs971465471 2050 dbSNP
rs917358390 2055 dbSNP
rs770862014 2057 dbSNP
rs1467285304 2059 dbSNP
rs966584161 2067 dbSNP
rs958775850 2068 dbSNP
rs1391536957 2069 dbSNP
rs1227751303 2073 dbSNP
rs1034009102 2074 dbSNP
rs78596722 2080 dbSNP
rs1229649734 2088 dbSNP
rs1352883269 2090 dbSNP
rs192714079 2093 dbSNP
rs1283080288 2094 dbSNP
rs1324655235 2100 dbSNP
rs534028162 2109 dbSNP
rs1020818807 2110 dbSNP
rs952332115 2111 dbSNP
rs1009293237 2112 dbSNP
rs1027899813 2120 dbSNP
rs1301425614 2126 dbSNP
rs186868593 2130 dbSNP
rs771941954 2137 dbSNP
rs1338976645 2146 dbSNP
rs1196516536 2157 dbSNP
rs757240274 2158 dbSNP
rs1449859484 2159 dbSNP
rs575629358 2161 dbSNP
rs1035045673 2163 dbSNP
rs1198544221 2164 dbSNP
rs1269356325 2171 dbSNP
rs1434734369 2174 dbSNP
rs1306885253 2175 dbSNP
rs1168060484 2176 dbSNP
rs1372208133 2177 dbSNP
rs1427189304 2191 dbSNP
rs1462130719 2191 dbSNP
rs557168750 2206 dbSNP
rs1169089685 2207 dbSNP
rs1403664030 2207 dbSNP
rs904991055 2210 dbSNP
rs1388955407 2213 dbSNP
rs1293864256 2215 dbSNP
rs568502767 2216 dbSNP
rs996909242 2219 dbSNP
rs1157301281 2221 dbSNP
rs899504803 2222 dbSNP
rs1044909986 2229 dbSNP
rs1411410383 2232 dbSNP
rs1357308035 2243 dbSNP
rs545191229 2244 dbSNP
rs1038986531 2246 dbSNP
rs1011198435 2252 dbSNP
rs548104353 2261 dbSNP
rs887246659 2261 dbSNP
rs893716727 2263 dbSNP
rs538009347 2272 dbSNP
rs1204536277 2280 dbSNP
rs934963804 2283 dbSNP
rs748094126 2284 dbSNP
rs780052569 2285 dbSNP
rs1163660822 2288 dbSNP
rs991624367 2291 dbSNP
rs1459844704 2299 dbSNP
rs182944891 2300 dbSNP
rs942470633 2301 dbSNP
rs910671710 2305 dbSNP
rs979736295 2306 dbSNP
rs1300153393 2307 dbSNP
rs986312733 2309 dbSNP
rs1245417807 2311 dbSNP
rs1315753438 2312 dbSNP
rs952345519 2312 dbSNP
rs78282406 2316 dbSNP
rs1230329639 2317 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000274811.4 | 3UTR | CAAUCAUUAUUUUUUUUAAUAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE42095 Differentiated embryonic stem cells 0.643 4.7e-4 0.617 8.6e-4 23 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.633 3.4e-2 0.583 5.0e-2 9 Click to see details
GSE28544 Breast cancer 0.346 4.9e-2 0.496 6.9e-3 24 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.339 7.2e-2 -0.558 5.3e-3 20 Click to see details
GSE19783 ER- ER- breast cancer 0.149 9.5e-2 0.054 3.2e-1 79 Click to see details
GSE21687 Ependynoma primary tumors -0.153 1.1e-1 -0.174 8.5e-2 64 Click to see details
GSE19536 Breast cancer 0.115 1.3e-1 0.064 2.6e-1 100 Click to see details
GSE28260 Renal cortex and medulla 0.327 1.4e-1 0.154 3.1e-1 13 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.205 1.6e-1 0.148 2.4e-1 25 Click to see details
GSE38226 Liver fibrosis -0.197 2.0e-1 -0.108 3.2e-1 21 Click to see details
GSE26953 Aortic valvular endothelial cells 0.18 2.0e-1 0.266 1.0e-1 24 Click to see details
GSE21032 Prostate cancer 0.074 2.5e-1 0.057 3.0e-1 83 Click to see details
GSE19783 ER+ ER+ breast cancer -0.082 3.7e-1 -0.087 3.6e-1 20 Click to see details
GSE19350 CNS germ cell tumors -0.063 4.2e-1 0.000 5.0e-1 12 Click to see details
GSE32688 Pancreatic cancer 0.03 4.4e-1 -0.022 4.5e-1 32 Click to see details
GSE17498 Multiple myeloma 0.008 4.8e-1 -0.010 4.8e-1 40 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.003 4.9e-1 0.182 1.9e-1 25 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
PAAD 0.995 0 1.000 0.5 4 Click to see details
PCPG -0.995 0.03 -1.000 0.5 3 Click to see details
LUAD 0.543 0.03 0.636 0.01 12 Click to see details
UCEC 0.402 0.04 0.430 0.03 19 Click to see details
PRAD 0.235 0.05 0.288 0.02 48 Click to see details
HNSC 0.238 0.06 0.288 0.03 42 Click to see details
BLCA 0.351 0.08 0.457 0.03 18 Click to see details
LUSC 0.221 0.09 0.246 0.07 38 Click to see details
LIHC 0.164 0.13 0.252 0.04 49 Click to see details
ESCA 0.348 0.15 0.518 0.05 11 Click to see details
CHOL 0.385 0.15 0.333 0.19 9 Click to see details
STAD 0.161 0.19 0.181 0.16 31 Click to see details
KIRC -0.088 0.24 -0.097 0.22 68 Click to see details
THCA 0.06 0.33 -0.010 0.47 59 Click to see details
BRCA -0.044 0.35 0.037 0.37 83 Click to see details
KICH 0.055 0.4 0.093 0.33 25 Click to see details
KIRP 0.044 0.41 0.081 0.33 32 Click to see details
CESC -0.177 0.44 -0.500 0.33 3 Click to see details
CESC -0.177 0.44 -0.500 0.33 3 Click to see details
CESC -0.177 0.44 -0.500 0.33 3 Click to see details
75 hsa-miR-16-2-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT004488 RARB retinoic acid receptor beta 3 1
MIRT038707 NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 1 1
MIRT057208 PPIF peptidylprolyl isomerase F 2 4
MIRT058726 RSBN1 round spermatid basic protein 1 2 8
MIRT074502 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 4
MIRT081544 ZNF431 zinc finger protein 431 2 4
MIRT096893 ERBB2IP erbb2 interacting protein 2 2
MIRT105124 MYC MYC proto-oncogene, bHLH transcription factor 2 2
MIRT107898 PTAR1 protein prenyltransferase alpha subunit repeat containing 1 2 4
MIRT109432 KLHL15 kelch like family member 15 2 6
MIRT166742 PAPD7 poly(A) RNA polymerase D7, non-canonical 2 6
MIRT171257 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma 2 2
MIRT192760 B2M beta-2-microglobulin 2 2
MIRT194905 RBBP6 RB binding protein 6, ubiquitin ligase 2 8
MIRT215599 SUB1 SUB1 homolog, transcriptional regulator 2 2
MIRT223632 ATP6V1C1 ATPase H+ transporting V1 subunit C1 2 4
MIRT241605 AMOTL1 angiomotin like 1 2 4
MIRT291174 SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 2 2
MIRT444286 ABCG2 ATP binding cassette subfamily G member 2 (Junior blood group) 2 2
MIRT463285 ZFX zinc finger protein, X-linked 2 4
MIRT471759 NUS1 NUS1 dehydrodolichyl diphosphate synthase subunit 2 8
MIRT479611 CDC25A cell division cycle 25A 2 2
MIRT481497 ARL6IP1 ADP ribosylation factor like GTPase 6 interacting protein 1 2 8
MIRT483117 SH3BP5 SH3 domain binding protein 5 2 2
MIRT502279 GRPEL2 GrpE like 2, mitochondrial 2 8
MIRT507838 CCNT1 cyclin T1 2 2
MIRT508179 MTRNR2L6 MT-RNR2-like 6 2 4
MIRT510576 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 6
MIRT517853 RPS4X ribosomal protein S4, X-linked 2 4
MIRT521690 PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 2 8
MIRT525070 FRK fyn related Src family tyrosine kinase 2 2
MIRT527082 UBE2E3 ubiquitin conjugating enzyme E2 E3 2 2
MIRT529552 EI24 EI24, autophagy associated transmembrane protein 2 2
MIRT530426 SULT1B1 sulfotransferase family 1B member 1 2 2
MIRT533909 TBC1D15 TBC1 domain family member 15 2 2
MIRT536627 IPO7 importin 7 2 2
MIRT537647 ERGIC2 ERGIC and golgi 2 2 4
MIRT538512 CLCN3 chloride voltage-gated channel 3 2 2
MIRT539219 ANP32E acidic nuclear phosphoprotein 32 family member E 2 6
MIRT539348 AGO2 argonaute 2, RISC catalytic component 2 4
MIRT539954 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT541208 HOXA10 homeobox A10 2 2
MIRT543216 TMEM117 transmembrane protein 117 2 2
MIRT543399 DROSHA drosha ribonuclease III 2 2
MIRT546648 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT546852 RAB1A RAB1A, member RAS oncogene family 2 2
MIRT549917 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT552998 USP46 ubiquitin specific peptidase 46 2 2
MIRT555254 PREPL prolyl endopeptidase-like 2 2
MIRT555956 NRIP1 nuclear receptor interacting protein 1 2 2
MIRT557095 HOXA9 homeobox A9 2 2
MIRT561396 TUBB2A tubulin beta 2A class IIa 2 2
MIRT561654 RNF219 ring finger protein 219 2 2
MIRT563101 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT565979 RNF44 ring finger protein 44 2 2
MIRT572396 CCDC14 coiled-coil domain containing 14 2 2
MIRT574400 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT607623 VSNL1 visinin like 1 2 2
MIRT610645 CTGF connective tissue growth factor 2 2
MIRT623379 LPP LIM domain containing preferred translocation partner in lipoma 2 2
MIRT624687 AR androgen receptor 2 2
MIRT632089 ALDH1A2 aldehyde dehydrogenase 1 family member A2 2 2
MIRT644216 CBS cystathionine-beta-synthase 2 2
MIRT647841 BID BH3 interacting domain death agonist 2 2
MIRT651649 WASF2 WAS protein family member 2 2 2
MIRT689064 AGMAT agmatinase 2 2
MIRT698150 TNPO1 transportin 1 2 2
MIRT700516 PTPN14 protein tyrosine phosphatase, non-receptor type 14 2 2
MIRT704081 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT705970 ACBD5 acyl-CoA binding domain containing 5 2 2
MIRT715694 COMMD3-BMI1 COMMD3-BMI1 readthrough 2 2
MIRT717184 BMI1 BMI1 proto-oncogene, polycomb ring finger 2 2
MIRT724607 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT724854 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT725401 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-16-2 Diethylstilbestrol approved 448537 Microarray mammosphere-derived epithelial cells (MDEC) 19549897 2009 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-16-2-3p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HCT-116)
hsa-miR-16-2-3p Mitoxantrone 4212 NSC279836 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-16-2-3p Cisplatin 5460033 NSC119875 approved sensitive Low Osteosarcoma cell line (HOS)
hsa-miR-16-2-3p Doxorubicin 31703 NSC123127 approved sensitive Low Osteosarcoma cell line (HOS)
hsa-miR-16-2-3p Paclitaxel 36314 NSC125973 approved sensitive High Non-Small Cell Lung Cancer cell line (H460)
hsa-miR-16-2-3p Bortezomib 387447 NSC681239 approved resistant Low Multiple Myeloma tissue
hsa-miR-16-2-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-16-2-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CAL-27) (cytosolic RNA)
hsa-miR-16-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (CAL-27) (total RNA)
hsa-miR-16-2-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-16-2-3p Doxorubicin 31703 NSC123127 approved sensitive cell line (BAS)
hsa-miR-16-2-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-16-2-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-16-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (HCT8)
hsa-miR-16-2-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-16-2-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (MDA-231)
hsa-miR-16-2-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-16-2-3p Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)

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