pre-miRNA Information
pre-miRNA hsa-mir-3622b   
Genomic Coordinates chr8: 27701673 - 27701767
Description Homo sapiens miR-3622b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3622b-3p
Sequence 58| UCACCUGAGCUCCCGUGCCUG |78
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1232922758 2 dbSNP
rs530939348 5 dbSNP
rs1439657384 10 dbSNP
rs1157333896 12 dbSNP
rs66683138 14 dbSNP
rs1044808718 15 dbSNP
rs946438979 19 dbSNP
rs551845360 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RBPJ   
Synonyms AOS3, CBF1, IGKJRB, IGKJRB1, KBF2, RBP-J, RBPJK, RBPSUH, SUH, csl
Description recombination signal binding protein for immunoglobulin kappa J region
Transcript NM_005349   
Other Transcripts NM_015874 , NM_203283 , NM_203284   
Expression
Putative miRNA Targets on RBPJ
3'UTR of RBPJ
(miRNA target sites are highlighted)
>RBPJ|NM_005349|3'UTR
   1 CTACCGTCTTTTTGCTAGGACTTAAACTGACTTGAGTGTGGCAAAAAGTTAACAAAAAAGGAGAAAAAATGAACAATCGT
  81 TTGTGGTTTCTTGGGAAAACTTTTCATACCAGGTGATACTATTCAAAAACCCCGTTGTCTCCCTGCAAGTGCTGATTTGA
 161 AATGCAGAAGCCACAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAATCAAAATGTATAAATATTGGAAATCA
 241 AGTTTTTCAGCTGTTTTGTTGGTTGGTTGGTTGGTTTTTGTTTGGTTTTGTTTAAATGGGCAAGAAGTAAATAATGTGGC
 321 TGGAATACAAGTTGAACAAACTAGAAGACACAAATCTAACATAGTTTTTATGGACCAAGGAACTTGTATATTGTATAAGC
 401 TTTAGTAAAAGGTACATTTTCACCATACCTTTTTTTATATCACGGTATTATAGTACACCTTGTTACCAAATAGGTTGTTC
 481 TCTTCCCCACCCACCTTTGAGCTTTTGCTCTAAAATACATTCAGGTTCCAAGCCTGACCATCCTTGTTTAATCTATCATA
 561 CTCTTCCAGGTTTTTTTTTTTTGGTCTAAGGCTGGAACTTTTTTCTTTTTTTTCAGCTGAAGTCTTATGACTTTTCATGA
 641 GTCAAAATTGTTTGGATTTCAGCAAGTCAAATCTTGCAAAGGCCTGCATATTTTTTTTAAGATTATATGAAGTCTGTGCA
 721 AAAGCTTTAAAAAAATGCCTCTGCCTTGCCTGCAATACATGCAATGTATGTTAACTTAGTCTCTCTTCTCAGACACTGTT
 801 GGTAGTTATTTCTGTGTTTTCCTTTTTTTAAAAAAAAATATGGACTTATTGTGGTTATCTGAGAGGTTCTAACATTCACA
 881 TGCAATTTGGTGTGGCCATTTAGCTATTAATGAGTTAATGGCGCAGAACTTGTTGATATTTGAAGTGTTCTCTCCCCTTT
 961 TCCCATGACGTAAATACATAGGTGTGTTCCAGGATTTGTTCAGGTTTTTCCCCCCTCCTAATCTTGTACATAACTTGTAT
1041 TATGTGTAAGTTAAACATTTTATTTTGAACTTGGAATGTTCCCAGTGATTTCATTCAGCAGGGTATTTTCTGCCTTGTTG
1121 GCAAGTGACAAAAAATATGGGAAGTATTTGCTACCAGTTGGTAGATGGTGCCCTTAATGGTAGAATGAGGAAAATGTCCG
1201 CAAAAGCATGTTTTATTATCTTTACTTTTTTGGGGGGTTGGAGGGGGTAGCCTAGCCAGAACATCATTGTAATCTTAAAA
1281 CATAAGATGCTTTTATTAGATGATCAACTAAAATAGCTGGAAGACAGTACTTTAGAAACAGATAGTTGTAAGATTATAAA
1361 ATGCAAATGTAACTTATGTTTTCATTTTTTTCTCTGCCTTTTTTGTTTGTTTGTTTTCTCTTTTCCAGTACTGAGCATCT
1441 CCACAAATGTCTCCTAACTCAGAAAATGTTTCTTTTCTTTTCAGTTGAGATTTGGTTGCATTCAGGGTTGTAGGTTGGCC
1521 TTGCTTGCTAACCCCGCCGGTTTTACCGTGCTTTCATTCCTGAACTTTGTTTATGCCTTTGTTTGGTTTCTTCGAAATTG
1601 CAGCAGACTCATTGGGCTACATTTAGTACAGGAACCACGTGTGTAATGTTATACAACACAGTCTAGTAATACAATCATCC
1681 CTCTTAGAGTAAAAACTACCTCTAGATTGTGGTAAGCTTTTACTGTCCCATAAAACAGGAGCCACAGTACCTTATGAATG
1761 CAAAACTGTAACTTCCTACAGTGTTTCCCTACAGAACATTGTCTTTCTGGTGTCCTGGGCTGTTTTGAAAAAGTTTCCAT
1841 TAATAGACTTTTTAGAAATTATTATTAGTAGCATTTTTTTTCCAGCTTTGCTGTCTTCATCACTCACTCTATGCTCAGAC
1921 TATGCCACTGTAAATATTCTTCCTAACATCTTTAAATCGCCTTTTCCTCAGTTTTCAAGGGGAAGGTCATTTGTAAAGCA
2001 CGTTAGGTGGTTAAATCAGTTATTGCGGTTTTCTCTTACTGCAAGCCTTTTTAATCACCCCCAGGCTGCATTTTATTCTA
2081 TATCGCCTTTTTTCTTCAAATCTGCTCCAATCACTCACTTCTCTCTTATAAGCTAATCCTGCCTCACACCTTAAATCTGT
2161 TTCAGTGATCAAGGGCAGAACTCATTGTGGCCTTATCTTTCTTTGTTGTAATTGTTCACTGTCTCTTTCTTACAGACCAC
2241 TTATTTCTGAGTAGTAGTTATTCCTCTCTATGGAGTCATGGCAGGAATCATTACACAGTGCTTTTGTTCAGAGCATGGAC
2321 ATGTTCCTAGTGCTGCTTTGCTTTAACGGCCACAAGTTTCCTCCACTTCCTAGGTTTGGTATTTAGTTAAGGAATCATAT
2401 TAAATTAACCAATAACAAAAGAGATACTTTTGAAGAACAAACTATTCCTTACCCATTTTTGTAGCTCAAAAATAATTTTT
2481 CAAGTTCATGACCTTATTAAAATGAACTTGTGTTTTTTTAACAAACATGTATGTTTTATTTTGATAGTTTCTTTCCGTAA
2561 GATAATTGAAATATTATACTGTAAACCCTTTTCTTTTCTTTTTTTGAAAAGTCCAAGAATGTACTTATACAGGCATTTTT
2641 CCCCACCTATTTTTGGCCATTCTCATACCACAGACTAAAGAGTGAAATGATTTGTCCATTGTAGCTTATTGTTTATCAGT
2721 AGTTCTTTTGTCAGCTGCTTACATTTTTTCTTTCATGGTTTTGTGAATCATTTTCAGTATGTAATTTATAGGAACCTTGT
2801 CCTCTGGTTATAGTAGACTGTGTGCCCTCCTCCAGTGATGGCATTATTAGACATGCTGGTCATTTACCCTCAGAAAGACT
2881 CTCTTATTAGAATGGTGAGTGCTTCAGTTATAGTATGTTTGAATTTTTAAAAAATTCTGTTTTAGAAATGTATCTTATGC
2961 TCTCATGACTATGCAGTTTCTAAACATACACATAGAAGCTGAGTCTCTGATCCAATATGTTTTTATTTGTTCCATTTAAT
3041 TTATCACATAGATTGGGAAGGCAAGCTAAAAGCCTTAAAAATGCCCTTTATATTTTGAGTGATTTCAGCGTTGAACACTA
3121 GTATACTATCTAAATTTGCTGCTCACTTTCTTTAAACTGTGGCAATTAAAGGCATGTTTATACATGACTTAATCGTGAAA
3201 TGTTTGTCACTCTTACTGCACAGACTTATCTGCAATCATAACTGGTTAGTTTTTTTGTTTTGTTTTGTTTTATTGTTTTT
3281 AATGAAACTGGTACCATCTGTGCTTTCACAAAAAACTTCCAATGCCATTTTTGAGAACTAACCTAACTAGTCATGCTAAC
3361 CAGAAAATCCACTGGGGAGGAGGTTCCTTTTGAAACAAAATGCTGTTCAGTTAGTAACCAAGTTACTTTGATTGCAAAAG
3441 CAGCTGTGTTTCTGATAAGTACTGAACAAATGTGTGTAATTTTCTGTGCCAGACTTATGACTTTGTTTTCAAGCACTGTA
3521 ATGTGGGATGGATGGTTAGAAACAATAATATATTAGGGTTTCTGTTTAACCCTTTCAGGACTGAACTGTATCTCCTTTTG
3601 TTAATTTTCCCCTGTGTTGTGATAAATGTTTGCCAGCATTCAGTACTGTGTTGGTCCAGATGTAGGTTTATATGCTCATT
3681 TTTAGCTTATTTCTTGTACCTTGCAGCATGCTCTACGCATTCAGTCCTTAAGGGGTTTATTTTACAAACTGTGCGCCTGT
3761 AAGGTTTATTAGCAATAAGATAGAAAATTGAGCAAGTTTATACCATAATTTTGTAGAAAAAAAGAATCTGCTCAGTTCCA
3841 TATTTCATCCGTGAAAAACTTGCAATACGAGCAGTTTCAAGGAATAAATAAAAAGGAAATGTAAACCATTGTAAAAGTCT
3921 TCTGTCGAATGTGCCTGATGCATGTATTATCGTCTTTTATTTCAGAATACTTCATAAAGATAAAATTAAATTCTATATTA
4001 TAGTTGGTGTATTTACAATCTTACCATGTACATCACATCAAAGTGATAGCTCTACTAATTTAATTTCCTTGTCAATGTTT
4081 TTAACTATATAGTGCTTTAAAGAGATTTTTTTTCCCTGTGTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gucCGUGCCCUCGAGUCCACu 5'
             |||||     |:||||| 
Target 5' aaaGCACG-----TTAGGTGg 3'
1995 - 2010 133.00 -15.50
2
miRNA  3' guccguGCCCU---CGAGUCCAcu 5'
                | |||   |:||||||  
Target 5' gtgttcCAGGATTTGTTCAGGTtt 3'
984 - 1007 131.00 -14.80
3
miRNA  3' guccgugcccucGAGUCCAcu 5'
                      :||||||  
Target 5' ctctaaaatacaTTCAGGTtc 3'
508 - 528 121.00 -7.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
1187156 81 ClinVar
COSN30501843 10 COSMIC
COSN31554723 49 COSMIC
COSN31492100 57 COSMIC
COSN30107496 71 COSMIC
COSN30100636 94 COSMIC
COSN15661788 193 COSMIC
COSN31133077 195 COSMIC
COSN28713509 206 COSMIC
COSN20099937 216 COSMIC
COSN5566968 395 COSMIC
COSN30544089 400 COSMIC
COSN31568425 442 COSMIC
COSN31608257 445 COSMIC
COSN20099938 583 COSMIC
COSN17986385 1532 COSMIC
COSN30383510 1549 COSMIC
COSN26318290 2089 COSMIC
COSN7635964 2609 COSMIC
COSN23638071 2718 COSMIC
COSN21768133 2761 COSMIC
COSN5566969 2991 COSMIC
COSN25034558 3013 COSMIC
COSN21876676 3073 COSMIC
COSN26715492 3351 COSMIC
COSN30344860 3401 COSMIC
COSN15863267 3870 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs368717046 6 dbSNP
rs372595077 7 dbSNP
rs1371501612 10 dbSNP
rs1020925084 17 dbSNP
rs748664003 17 dbSNP
rs866532092 21 dbSNP
rs763013895 22 dbSNP
rs1306445569 25 dbSNP
rs1351827553 28 dbSNP
rs1397211249 30 dbSNP
rs770058789 32 dbSNP
rs768859401 34 dbSNP
rs1366919533 35 dbSNP
rs185229282 36 dbSNP
rs1163624896 39 dbSNP
rs1231940798 43 dbSNP
rs1472284061 46 dbSNP
rs1299706373 49 dbSNP
rs1342661041 50 dbSNP
rs1204173441 51 dbSNP
rs1185936601 54 dbSNP
rs1366325275 54 dbSNP
rs1252902928 64 dbSNP
rs1386322350 64 dbSNP
rs979726338 77 dbSNP
rs752802924 78 dbSNP
rs557915044 80 dbSNP
rs77760317 81 dbSNP
rs139206085 91 dbSNP
rs1334868278 98 dbSNP
rs571007380 99 dbSNP
rs1268098965 109 dbSNP
rs1463919328 113 dbSNP
rs1207326496 114 dbSNP
rs1262866526 119 dbSNP
rs1287431661 122 dbSNP
rs573982434 125 dbSNP
rs1442071315 127 dbSNP
rs781294643 130 dbSNP
rs752929590 134 dbSNP
rs1388211941 135 dbSNP
rs1453942243 138 dbSNP
rs944912748 138 dbSNP
rs1475599233 141 dbSNP
rs1158489948 147 dbSNP
rs1181877809 151 dbSNP
rs866741172 168 dbSNP
rs1409740312 173 dbSNP
rs1058022 174 dbSNP
rs1455279022 175 dbSNP
rs1036490908 176 dbSNP
rs1158972520 178 dbSNP
rs1199757330 178 dbSNP
rs1245085985 178 dbSNP
rs1275361380 178 dbSNP
rs1319674561 178 dbSNP
rs1325650404 178 dbSNP
rs1328859339 178 dbSNP
rs1373287080 178 dbSNP
rs1382477991 178 dbSNP
rs1387430913 178 dbSNP
rs1431818737 178 dbSNP
rs1435589076 178 dbSNP
rs1455971139 178 dbSNP
rs1457890690 178 dbSNP
rs1477961641 178 dbSNP
rs897964346 178 dbSNP
rs1289236648 179 dbSNP
rs1401162256 187 dbSNP
rs1393952448 188 dbSNP
rs1247626733 189 dbSNP
rs1314290729 191 dbSNP
rs770327838 192 dbSNP
rs930923223 192 dbSNP
rs1278995193 193 dbSNP
rs1218595894 194 dbSNP
rs201279979 194 dbSNP
rs1049753052 195 dbSNP
rs1318132249 196 dbSNP
rs1364097813 196 dbSNP
rs1227301050 197 dbSNP
rs1240374085 197 dbSNP
rs1361284928 198 dbSNP
rs1335226452 199 dbSNP
rs1414438706 199 dbSNP
rs1389557694 200 dbSNP
rs1423655858 200 dbSNP
rs1186921803 201 dbSNP
rs1446616060 202 dbSNP
rs865794885 202 dbSNP
rs1285900631 204 dbSNP
rs372992565 205 dbSNP
rs1181695025 206 dbSNP
rs1205703120 206 dbSNP
rs1294708094 206 dbSNP
rs1340860697 206 dbSNP
rs202057048 206 dbSNP
rs1247759090 207 dbSNP
rs1379402202 212 dbSNP
rs1241726873 214 dbSNP
rs1378759209 215 dbSNP
rs1480834509 216 dbSNP
rs1447745436 217 dbSNP
rs1479045978 221 dbSNP
rs904881909 221 dbSNP
rs1344701729 222 dbSNP
rs1199058982 223 dbSNP
rs1259932058 225 dbSNP
rs1486112602 226 dbSNP
rs1002264865 227 dbSNP
rs1181634408 230 dbSNP
rs1056261183 231 dbSNP
rs1249623274 231 dbSNP
rs542628478 232 dbSNP
rs1159682606 235 dbSNP
rs374343477 239 dbSNP
rs1471690820 240 dbSNP
rs138284583 242 dbSNP
rs1009283711 252 dbSNP
rs1234338611 252 dbSNP
rs541259594 254 dbSNP
rs1224040337 258 dbSNP
rs540043701 258 dbSNP
rs756331122 258 dbSNP
rs756326184 262 dbSNP
rs1322009578 263 dbSNP
rs1020810394 271 dbSNP
rs1377446040 275 dbSNP
rs778002342 300 dbSNP
rs1376890136 322 dbSNP
rs1290540728 323 dbSNP
rs1411004097 329 dbSNP
rs564272393 341 dbSNP
rs1306324961 342 dbSNP
rs968259532 343 dbSNP
rs1000809578 347 dbSNP
rs1464393890 361 dbSNP
rs1403768272 371 dbSNP
rs563879848 384 dbSNP
rs367624709 394 dbSNP
rs1249511388 408 dbSNP
rs1201041071 422 dbSNP
rs1408838789 426 dbSNP
rs1245561163 430 dbSNP
rs796395066 431 dbSNP
rs1318305261 437 dbSNP
rs1270461694 440 dbSNP
rs550060341 444 dbSNP
rs1329151446 451 dbSNP
rs1374810484 457 dbSNP
rs1388977364 467 dbSNP
rs1368430046 470 dbSNP
rs1393675156 475 dbSNP
rs911853456 491 dbSNP
rs1292977281 497 dbSNP
rs1308382967 503 dbSNP
rs569803067 508 dbSNP
rs1456501237 518 dbSNP
rs1232629611 520 dbSNP
rs755112194 524 dbSNP
rs528903656 526 dbSNP
rs1433653222 529 dbSNP
rs919450446 534 dbSNP
rs1188915563 539 dbSNP
rs1466022519 542 dbSNP
rs930789266 543 dbSNP
rs201666085 545 dbSNP
rs1207639100 550 dbSNP
rs1464740320 551 dbSNP
rs1266575995 553 dbSNP
rs1049348882 556 dbSNP
rs1313270898 559 dbSNP
rs926861039 562 dbSNP
rs1217532852 564 dbSNP
rs937700244 565 dbSNP
rs1056146607 567 dbSNP
rs1304329180 571 dbSNP
rs1466274368 571 dbSNP
rs777521133 571 dbSNP
rs1481636899 579 dbSNP
rs548533854 580 dbSNP
rs74654941 583 dbSNP
rs1177821418 584 dbSNP
rs78114989 585 dbSNP
rs1187564051 592 dbSNP
rs777982743 595 dbSNP
rs1266651862 602 dbSNP
rs1260139383 606 dbSNP
rs1447247723 606 dbSNP
rs1202525211 616 dbSNP
rs1483896458 620 dbSNP
rs1431358455 622 dbSNP
rs1255914942 624 dbSNP
rs113516220 629 dbSNP
rs903711830 632 dbSNP
rs1001097798 636 dbSNP
rs1227980986 637 dbSNP
rs1363250162 642 dbSNP
rs1314667282 647 dbSNP
rs749320486 656 dbSNP
rs1378090624 669 dbSNP
rs1301027744 672 dbSNP
rs557976518 682 dbSNP
rs1431496932 689 dbSNP
rs1028278010 691 dbSNP
rs1428727092 693 dbSNP
rs1427482786 699 dbSNP
rs1166281011 719 dbSNP
rs1355887902 720 dbSNP
rs1462091739 729 dbSNP
rs570748774 732 dbSNP
rs1292420576 735 dbSNP
rs954098661 742 dbSNP
rs1367599535 744 dbSNP
rs1424760396 751 dbSNP
rs1439258673 755 dbSNP
rs571801458 756 dbSNP
rs1306101633 760 dbSNP
rs1372122359 765 dbSNP
rs1227983377 766 dbSNP
rs1337759307 774 dbSNP
rs1267464014 776 dbSNP
rs1245723553 779 dbSNP
rs1339680652 780 dbSNP
rs1008065481 795 dbSNP
rs1411634084 796 dbSNP
rs749464769 805 dbSNP
rs1309462194 815 dbSNP
rs1407447636 819 dbSNP
rs965992785 823 dbSNP
rs11549569 830 dbSNP
rs1368284540 830 dbSNP
rs1457049475 830 dbSNP
rs557658381 831 dbSNP
rs1487469950 838 dbSNP
rs77336243 839 dbSNP
rs1253147512 840 dbSNP
rs1253423934 841 dbSNP
rs1436167866 842 dbSNP
rs772139496 843 dbSNP
rs1448683303 848 dbSNP
rs1186415927 850 dbSNP
rs1229992165 852 dbSNP
rs1421277794 858 dbSNP
rs1428740044 861 dbSNP
rs1287651178 868 dbSNP
rs1236720033 869 dbSNP
rs926772484 879 dbSNP
rs1323595201 881 dbSNP
rs536680200 884 dbSNP
rs938254576 886 dbSNP
rs1388104067 890 dbSNP
rs1324363689 891 dbSNP
rs1159105226 893 dbSNP
rs746427416 897 dbSNP
rs553381355 900 dbSNP
rs573425542 919 dbSNP
rs6816542 923 dbSNP
rs565340668 924 dbSNP
rs111226502 928 dbSNP
rs1465192217 944 dbSNP
rs543223027 947 dbSNP
rs903596069 948 dbSNP
rs1215320567 950 dbSNP
rs563612692 952 dbSNP
rs75991297 967 dbSNP
rs147388257 970 dbSNP
rs558919947 971 dbSNP
rs1008116312 974 dbSNP
rs1019471105 977 dbSNP
rs1389881025 979 dbSNP
rs528211077 988 dbSNP
rs1399521246 990 dbSNP
rs1404972781 999 dbSNP
rs1173304418 1005 dbSNP
rs1477744386 1006 dbSNP
rs1393281892 1010 dbSNP
rs184000400 1015 dbSNP
rs1450276364 1016 dbSNP
rs6821440 1019 dbSNP
rs1464374237 1024 dbSNP
rs368416441 1030 dbSNP
rs1026438727 1031 dbSNP
rs1213356921 1038 dbSNP
rs1444120903 1047 dbSNP
rs1279237692 1049 dbSNP
rs139433898 1074 dbSNP
rs1345148576 1077 dbSNP
rs1276106656 1079 dbSNP
rs1228736483 1081 dbSNP
rs1363983410 1081 dbSNP
rs984860767 1083 dbSNP
rs1429061613 1089 dbSNP
rs1034279548 1103 dbSNP
rs1411038324 1104 dbSNP
rs1475925927 1114 dbSNP
rs1335463071 1122 dbSNP
rs1164982801 1130 dbSNP
rs1419283989 1138 dbSNP
rs1373737653 1139 dbSNP
rs1170527974 1140 dbSNP
rs959506551 1141 dbSNP
rs1389767657 1151 dbSNP
rs1184629043 1158 dbSNP
rs992436865 1159 dbSNP
rs918164355 1169 dbSNP
rs1347262994 1174 dbSNP
rs1186792366 1184 dbSNP
rs945062364 1197 dbSNP
rs76994449 1200 dbSNP
rs1302523490 1207 dbSNP
rs936431167 1230 dbSNP
rs1229622680 1232 dbSNP
rs1049466764 1233 dbSNP
rs1416760188 1235 dbSNP
rs889638217 1237 dbSNP
rs550879519 1240 dbSNP
rs768474893 1242 dbSNP
rs1354085136 1251 dbSNP
rs1328395077 1257 dbSNP
rs1309998035 1261 dbSNP
rs773131621 1263 dbSNP
rs943860325 1268 dbSNP
rs1040974922 1276 dbSNP
rs1168617647 1283 dbSNP
rs762848010 1288 dbSNP
rs1414311861 1291 dbSNP
rs994060191 1296 dbSNP
rs1026741823 1311 dbSNP
rs189138804 1318 dbSNP
rs191447888 1319 dbSNP
rs1230631618 1331 dbSNP
rs1255022557 1334 dbSNP
rs1486442097 1340 dbSNP
rs1291094793 1346 dbSNP
rs1233041737 1368 dbSNP
rs1333422151 1370 dbSNP
rs1290757785 1378 dbSNP
rs1188132642 1391 dbSNP
rs1372737699 1392 dbSNP
rs1296493974 1395 dbSNP
rs1033752409 1399 dbSNP
rs1470089675 1402 dbSNP
rs1157294526 1406 dbSNP
rs1325056670 1409 dbSNP
rs1410755850 1410 dbSNP
rs1401696612 1414 dbSNP
rs959558848 1417 dbSNP
rs540693331 1421 dbSNP
rs553446718 1427 dbSNP
rs1282020402 1429 dbSNP
rs992322519 1439 dbSNP
rs1373943334 1443 dbSNP
rs1405212162 1450 dbSNP
rs1192403808 1453 dbSNP
rs1436743599 1454 dbSNP
rs1025107647 1456 dbSNP
rs1245764474 1463 dbSNP
rs1211361418 1473 dbSNP
rs1467426670 1476 dbSNP
rs966956375 1488 dbSNP
rs1209947893 1491 dbSNP
rs1316821504 1495 dbSNP
rs1313572872 1499 dbSNP
rs1349893519 1502 dbSNP
rs1439971876 1507 dbSNP
rs1221013093 1508 dbSNP
rs1302970970 1511 dbSNP
rs1438923737 1513 dbSNP
rs978337031 1519 dbSNP
rs1320939907 1521 dbSNP
rs1453026831 1531 dbSNP
rs982485196 1532 dbSNP
rs1373939712 1536 dbSNP
rs1393897872 1537 dbSNP
rs924958983 1537 dbSNP
rs555844666 1540 dbSNP
rs1218488368 1541 dbSNP
rs1187459937 1546 dbSNP
rs936330825 1547 dbSNP
rs1277922278 1548 dbSNP
rs573285784 1549 dbSNP
rs1349608160 1565 dbSNP
rs1312874525 1586 dbSNP
rs985642826 1594 dbSNP
rs575700172 1595 dbSNP
rs1367586864 1598 dbSNP
rs1298135675 1600 dbSNP
rs910964164 1608 dbSNP
rs74931548 1609 dbSNP
rs1183317469 1613 dbSNP
rs77598726 1618 dbSNP
rs1470794617 1621 dbSNP
rs918386211 1622 dbSNP
rs183713130 1625 dbSNP
rs1390400474 1630 dbSNP
rs1200089246 1638 dbSNP
rs112525004 1639 dbSNP
rs1174455505 1640 dbSNP
rs1260030674 1642 dbSNP
rs1370152520 1642 dbSNP
rs112056315 1661 dbSNP
rs754065620 1662 dbSNP
rs573925445 1675 dbSNP
rs757463139 1682 dbSNP
rs1486269512 1683 dbSNP
rs1006210142 1684 dbSNP
rs879743433 1686 dbSNP
rs1344661193 1699 dbSNP
rs1275624813 1700 dbSNP
rs1226895242 1713 dbSNP
rs1408327654 1715 dbSNP
rs1314559136 1718 dbSNP
rs1396587004 1724 dbSNP
rs1354729100 1727 dbSNP
rs544577303 1728 dbSNP
rs1411132232 1745 dbSNP
rs1370577397 1746 dbSNP
rs1166989133 1756 dbSNP
rs1330963979 1759 dbSNP
rs1355113170 1769 dbSNP
rs542504013 1777 dbSNP
rs1435595531 1778 dbSNP
rs1167315649 1781 dbSNP
rs559181038 1789 dbSNP
rs779305075 1795 dbSNP
rs769351650 1802 dbSNP
rs1301001177 1805 dbSNP
rs143464793 1808 dbSNP
rs1186341241 1815 dbSNP
rs191951762 1826 dbSNP
rs1296473118 1829 dbSNP
rs1337022998 1834 dbSNP
rs565027775 1835 dbSNP
rs1195475155 1837 dbSNP
rs530501536 1840 dbSNP
rs1267056037 1841 dbSNP
rs73126675 1854 dbSNP
rs1000210622 1858 dbSNP
rs563602526 1858 dbSNP
rs1213561005 1868 dbSNP
rs1032580830 1874 dbSNP
rs957976668 1874 dbSNP
rs1389371620 1875 dbSNP
rs985141595 1897 dbSNP
rs183759428 1909 dbSNP
rs780641921 1912 dbSNP
rs536804878 1917 dbSNP
rs1372781947 1919 dbSNP
rs1473834839 1929 dbSNP
rs918440234 1931 dbSNP
rs1181159464 1938 dbSNP
rs1417626081 1941 dbSNP
rs1169730142 1951 dbSNP
rs148679474 1959 dbSNP
rs1420249777 1961 dbSNP
rs1467888690 1963 dbSNP
rs1270997734 1985 dbSNP
rs1210564579 1990 dbSNP
rs1351288253 1993 dbSNP
rs1048821235 1999 dbSNP
rs1236243686 2008 dbSNP
rs909794820 2010 dbSNP
rs937215174 2018 dbSNP
rs1323766570 2025 dbSNP
rs1396561133 2027 dbSNP
rs567143985 2028 dbSNP
rs1055135143 2030 dbSNP
rs895116285 2055 dbSNP
rs1158430260 2058 dbSNP
rs1386308386 2058 dbSNP
rs747424790 2059 dbSNP
rs1229083249 2062 dbSNP
rs1013693051 2085 dbSNP
rs768292764 2086 dbSNP
rs1194540043 2088 dbSNP
rs1354990534 2096 dbSNP
rs1046498203 2104 dbSNP
rs902708092 2108 dbSNP
rs776279034 2110 dbSNP
rs1447576534 2122 dbSNP
rs1271883089 2124 dbSNP
rs999690868 2129 dbSNP
rs1203249065 2130 dbSNP
rs1346531382 2133 dbSNP
rs1280366674 2139 dbSNP
rs1233162061 2140 dbSNP
rs1368307650 2148 dbSNP
rs1033048004 2150 dbSNP
rs1433332637 2154 dbSNP
rs1214782235 2163 dbSNP
rs565138219 2167 dbSNP
rs958317902 2169 dbSNP
rs1261391477 2180 dbSNP
rs1434403090 2182 dbSNP
rs1393491581 2184 dbSNP
rs1170642545 2186 dbSNP
rs1475624967 2187 dbSNP
rs1241253099 2191 dbSNP
rs1190972709 2193 dbSNP
rs1445511815 2194 dbSNP
rs1444034526 2196 dbSNP
rs1195538249 2207 dbSNP
rs1373752548 2224 dbSNP
rs186932258 2229 dbSNP
rs1474946583 2230 dbSNP
rs1345033440 2236 dbSNP
rs558662468 2238 dbSNP
rs1340540726 2241 dbSNP
rs1269950076 2242 dbSNP
rs1420015234 2247 dbSNP
rs1461832066 2253 dbSNP
rs569359281 2264 dbSNP
rs1313636100 2270 dbSNP
rs375547049 2271 dbSNP
rs532278437 2276 dbSNP
rs1383591250 2280 dbSNP
rs976496968 2281 dbSNP
rs1418575963 2283 dbSNP
rs370466899 2290 dbSNP
rs1318610360 2293 dbSNP
rs918324116 2305 dbSNP
rs1165917315 2310 dbSNP
rs369873826 2319 dbSNP
rs1418491635 2321 dbSNP
rs573509138 2323 dbSNP
rs545995848 2327 dbSNP
rs1253299114 2339 dbSNP
rs759870325 2349 dbSNP
rs542365346 2354 dbSNP
rs1294520388 2367 dbSNP
rs1272821879 2388 dbSNP
rs1213180287 2390 dbSNP
rs1337315202 2391 dbSNP
rs1294455733 2397 dbSNP
rs552865810 2398 dbSNP
rs193234161 2399 dbSNP
rs1260553793 2401 dbSNP
rs1281320056 2404 dbSNP
rs916608152 2420 dbSNP
rs949351412 2421 dbSNP
rs868072536 2428 dbSNP
rs1348940388 2437 dbSNP
rs902593230 2448 dbSNP
rs115663572 2449 dbSNP
rs1164165781 2452 dbSNP
rs1474168536 2454 dbSNP
rs1413598675 2475 dbSNP
rs1177263916 2487 dbSNP
rs1469372727 2489 dbSNP
rs1053966651 2491 dbSNP
rs893938625 2505 dbSNP
rs1223233270 2511 dbSNP
rs1274152005 2513 dbSNP
rs1470121960 2513 dbSNP
rs1007115200 2520 dbSNP
rs1333307134 2521 dbSNP
rs1018465529 2527 dbSNP
rs2788861 2528 dbSNP
rs997802001 2530 dbSNP
rs1485431404 2540 dbSNP
rs1025856719 2555 dbSNP
rs530673920 2557 dbSNP
rs1459866524 2558 dbSNP
rs984246173 2575 dbSNP
rs547881244 2578 dbSNP
rs567761839 2579 dbSNP
rs1405097598 2580 dbSNP
rs1195148882 2588 dbSNP
rs560994029 2588 dbSNP
rs1454425234 2589 dbSNP
rs530341933 2598 dbSNP
rs1016784353 2599 dbSNP
rs1180963394 2600 dbSNP
rs1361954441 2609 dbSNP
rs958508143 2616 dbSNP
rs1467578032 2621 dbSNP
rs991432701 2629 dbSNP
rs917162538 2630 dbSNP
rs949403746 2634 dbSNP
rs1282204473 2643 dbSNP
rs1158871740 2646 dbSNP
rs1374478376 2650 dbSNP
rs1432472862 2663 dbSNP
rs1348851549 2666 dbSNP
rs1302489480 2669 dbSNP
rs1438443723 2675 dbSNP
rs1363735254 2677 dbSNP
rs1314234935 2681 dbSNP
rs1355513872 2695 dbSNP
rs982112450 2698 dbSNP
rs1478200888 2703 dbSNP
rs766043226 2705 dbSNP
rs1174951840 2706 dbSNP
rs923904102 2706 dbSNP
rs1435014632 2708 dbSNP
rs1397161732 2713 dbSNP
rs935443635 2714 dbSNP
rs1171288428 2715 dbSNP
rs1054258309 2718 dbSNP
rs1264253929 2726 dbSNP
rs1306948111 2729 dbSNP
rs1187657227 2730 dbSNP
rs1485813529 2736 dbSNP
rs1261196216 2742 dbSNP
rs1334451821 2749 dbSNP
rs543781045 2751 dbSNP
rs1485999847 2757 dbSNP
rs893999923 2760 dbSNP
rs1279891082 2780 dbSNP
rs1232310427 2781 dbSNP
rs1309075445 2782 dbSNP
rs1295993676 2793 dbSNP
rs1213967493 2803 dbSNP
rs1241637930 2814 dbSNP
rs1359768976 2816 dbSNP
rs1314247870 2818 dbSNP
rs1414872741 2829 dbSNP
rs1261677378 2832 dbSNP
rs1347507015 2835 dbSNP
rs201419023 2844 dbSNP
rs1310727344 2845 dbSNP
rs1463171029 2846 dbSNP
rs1375190076 2856 dbSNP
rs1171545362 2860 dbSNP
rs942861000 2866 dbSNP
rs1422110373 2868 dbSNP
rs1282616577 2870 dbSNP
rs1039969941 2872 dbSNP
rs901432826 2877 dbSNP
rs998357403 2885 dbSNP
rs1481729731 2888 dbSNP
rs1025319596 2889 dbSNP
rs1176643990 2899 dbSNP
rs1248344644 2902 dbSNP
rs1420731901 2903 dbSNP
rs1182339401 2904 dbSNP
rs886750710 2907 dbSNP
rs1452236783 2912 dbSNP
rs1005323023 2913 dbSNP
rs567204348 2914 dbSNP
rs376205854 2916 dbSNP
rs1354313509 2917 dbSNP
rs1392830371 2929 dbSNP
rs774362313 2930 dbSNP
rs1375631351 2935 dbSNP
rs113620477 2936 dbSNP
rs372624680 2936 dbSNP
rs759326850 2936 dbSNP
rs1398490755 2940 dbSNP
rs764223024 2951 dbSNP
rs7684740 2965 dbSNP
rs1393636262 2966 dbSNP
rs1310517051 2969 dbSNP
rs1370679202 2970 dbSNP
rs1185493800 2972 dbSNP
rs1421176753 2974 dbSNP
rs1232502360 2975 dbSNP
rs1305928336 2976 dbSNP
rs971311444 2987 dbSNP
rs756414082 2993 dbSNP
rs10005515 2999 dbSNP
rs1274780652 3004 dbSNP
rs753898773 3006 dbSNP
rs1214297856 3009 dbSNP
rs185415047 3012 dbSNP
rs956903380 3013 dbSNP
rs1249682806 3015 dbSNP
rs1335771254 3016 dbSNP
rs1481608998 3026 dbSNP
rs1196280921 3031 dbSNP
rs1389277513 3038 dbSNP
rs1375203772 3041 dbSNP
rs1328323295 3048 dbSNP
rs1252187249 3055 dbSNP
rs1394393721 3063 dbSNP
rs1466992422 3071 dbSNP
rs1195208665 3073 dbSNP
rs1395317630 3090 dbSNP
rs1364407999 3092 dbSNP
rs1181399689 3100 dbSNP
rs757516221 3111 dbSNP
rs538198437 3114 dbSNP
rs1194021939 3117 dbSNP
rs142221452 3124 dbSNP
rs1265195997 3127 dbSNP
rs1039852767 3129 dbSNP
rs190667028 3151 dbSNP
rs1237578128 3158 dbSNP
rs1259601032 3158 dbSNP
rs1349585876 3176 dbSNP
rs1306181331 3177 dbSNP
rs750571553 3185 dbSNP
rs1332668027 3187 dbSNP
rs1330828683 3195 dbSNP
rs934260651 3196 dbSNP
rs758812895 3209 dbSNP
rs1385823444 3217 dbSNP
rs1158054696 3218 dbSNP
rs536077312 3234 dbSNP
rs1418171638 3236 dbSNP
rs1328264355 3248 dbSNP
rs1397122276 3250 dbSNP
rs1174429488 3253 dbSNP
rs1453596928 3259 dbSNP
rs1368655629 3270 dbSNP
rs1195283266 3280 dbSNP
rs886805574 3286 dbSNP
rs1214190173 3289 dbSNP
rs1213822428 3295 dbSNP
rs1486330618 3296 dbSNP
rs1293583391 3320 dbSNP
rs552728865 3323 dbSNP
rs1233050139 3328 dbSNP
rs368950894 3343 dbSNP
rs1344790976 3351 dbSNP
rs151187925 3356 dbSNP
rs1230330085 3363 dbSNP
rs1309299215 3370 dbSNP
rs1327525669 3375 dbSNP
rs1298051858 3384 dbSNP
rs79630038 3395 dbSNP
rs1377301168 3397 dbSNP
rs1313744711 3414 dbSNP
rs1422865048 3427 dbSNP
rs1434304258 3427 dbSNP
rs1038161033 3429 dbSNP
rs558777985 3430 dbSNP
rs894231643 3437 dbSNP
rs1012639017 3442 dbSNP
rs1024158447 3444 dbSNP
rs150850979 3445 dbSNP
rs757361291 3445 dbSNP
rs757659908 3445 dbSNP
rs1440322961 3447 dbSNP
rs1215333991 3454 dbSNP
rs1277031792 3455 dbSNP
rs181468241 3456 dbSNP
rs956766484 3460 dbSNP
rs1485370939 3477 dbSNP
rs989887507 3480 dbSNP
rs1217293019 3491 dbSNP
rs915205441 3499 dbSNP
rs1293956584 3501 dbSNP
rs1357645580 3502 dbSNP
rs1447653113 3502 dbSNP
rs1331063716 3508 dbSNP
rs746935363 3514 dbSNP
rs544168885 3515 dbSNP
rs532525385 3527 dbSNP
rs754798175 3547 dbSNP
rs1399216316 3548 dbSNP
rs1168487517 3553 dbSNP
rs1462921316 3555 dbSNP
rs1418012977 3559 dbSNP
rs1186600124 3564 dbSNP
rs1428620528 3565 dbSNP
rs1163510645 3572 dbSNP
rs1417781524 3575 dbSNP
rs1460334240 3576 dbSNP
rs1167623244 3577 dbSNP
rs1350809037 3580 dbSNP
rs1430327387 3584 dbSNP
rs1227816516 3586 dbSNP
rs1287364146 3586 dbSNP
rs964108182 3591 dbSNP
rs1281515399 3596 dbSNP
rs747554472 3597 dbSNP
rs1375929416 3601 dbSNP
rs1329019716 3604 dbSNP
rs975442306 3612 dbSNP
rs184492003 3613 dbSNP
rs1163915607 3616 dbSNP
rs1403117371 3620 dbSNP
rs1409478865 3648 dbSNP
rs540855228 3649 dbSNP
rs780900349 3652 dbSNP
rs1400701304 3661 dbSNP
rs1469284904 3662 dbSNP
rs934137781 3663 dbSNP
rs1177159496 3670 dbSNP
rs747881625 3673 dbSNP
rs1292671942 3678 dbSNP
rs539727399 3679 dbSNP
rs747631697 3684 dbSNP
rs1320033217 3686 dbSNP
rs1235040792 3701 dbSNP
rs1047342774 3705 dbSNP
rs553558030 3706 dbSNP
rs1307268040 3712 dbSNP
rs139319813 3714 dbSNP
rs566947515 3717 dbSNP
rs1292898984 3718 dbSNP
rs1213329300 3728 dbSNP
rs569485686 3730 dbSNP
rs531629885 3735 dbSNP
rs748837458 3736 dbSNP
rs1378106435 3744 dbSNP
rs776800321 3749 dbSNP
rs1186686024 3752 dbSNP
rs1455875845 3755 dbSNP
rs770767403 3756 dbSNP
rs1045490651 3765 dbSNP
rs1487779912 3770 dbSNP
rs1243977092 3781 dbSNP
rs115999380 3787 dbSNP
rs1487969295 3803 dbSNP
rs1284174387 3805 dbSNP
rs1190656033 3806 dbSNP
rs1236720697 3813 dbSNP
rs1348370552 3815 dbSNP
rs1300301488 3816 dbSNP
rs1217460605 3833 dbSNP
rs1363980849 3834 dbSNP
rs1270632353 3841 dbSNP
rs1398864542 3843 dbSNP
rs999088675 3850 dbSNP
rs1314368696 3851 dbSNP
rs568245544 3852 dbSNP
rs1175783769 3856 dbSNP
rs1157300958 3861 dbSNP
rs1432016214 3869 dbSNP
rs188506626 3870 dbSNP
rs1194967788 3881 dbSNP
rs1477554553 3883 dbSNP
rs1420529030 3896 dbSNP
rs1312408184 3897 dbSNP
rs769866790 3900 dbSNP
rs1022268684 3909 dbSNP
rs1483692485 3910 dbSNP
rs1255258223 3913 dbSNP
rs949762561 3914 dbSNP
rs1207767221 3923 dbSNP
rs181306638 3927 dbSNP
rs975496259 3928 dbSNP
rs544542982 3931 dbSNP
rs955605284 3933 dbSNP
rs1415082787 3938 dbSNP
rs1377985595 3943 dbSNP
rs759525354 3945 dbSNP
rs1372457456 3946 dbSNP
rs1464876042 3951 dbSNP
rs929136846 3953 dbSNP
rs1048954049 3970 dbSNP
rs1308873971 3971 dbSNP
rs1421644932 3977 dbSNP
rs887623781 3983 dbSNP
rs1005617308 3986 dbSNP
rs1190145774 3994 dbSNP
rs1424400730 3996 dbSNP
rs1039817533 3998 dbSNP
rs941620972 4001 dbSNP
rs538783294 4004 dbSNP
rs1258436467 4008 dbSNP
rs1277623494 4010 dbSNP
rs558602955 4019 dbSNP
rs1210146076 4020 dbSNP
rs1238567908 4025 dbSNP
rs1470011774 4033 dbSNP
rs948355494 4037 dbSNP
rs1310176587 4041 dbSNP
rs1029895706 4045 dbSNP
rs1376046407 4048 dbSNP
rs1332439705 4056 dbSNP
rs776728249 4060 dbSNP
rs1398739551 4078 dbSNP
rs1440596880 4080 dbSNP
rs1458496592 4082 dbSNP
rs999074057 4086 dbSNP
rs575463287 4088 dbSNP
rs1436676331 4093 dbSNP
rs1334842684 4094 dbSNP
rs934390136 4100 dbSNP
rs1238623788 4106 dbSNP
rs199777095 4106 dbSNP
rs35885247 4106 dbSNP
rs373424262 4107 dbSNP
rs62411619 4114 dbSNP
rs62411620 4117 dbSNP
rs1033115992 4124 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' guccgugcccucgaGUCCACu 5'
                        |||||| 
Target 5' aaaacuuuucauacCAGGUGa 3'
1 - 21
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000342320.4 | 3UTR | AAAACUUUUCAUACCAGGUGAUACUAUUCAAAAACCCCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
THCA -0.032 0.47 0.107 0.41 7 Click to see details
THCA -0.032 0.47 0.107 0.41 7 Click to see details
THCA -0.032 0.47 0.107 0.41 7 Click to see details
THCA -0.032 0.47 0.107 0.41 7 Click to see details
THCA -0.032 0.47 0.107 0.41 7 Click to see details
THCA -0.032 0.47 0.107 0.41 7 Click to see details
102 hsa-miR-3622b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT076713 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT080212 PRKACB protein kinase cAMP-activated catalytic subunit beta 2 2
MIRT081398 GTPBP3 GTP binding protein 3, mitochondrial 2 2
MIRT107158 ZBTB43 zinc finger and BTB domain containing 43 2 2
MIRT254071 BACH1 BTB domain and CNC homolog 1 2 2
MIRT409790 FOXO3 forkhead box O3 2 2
MIRT448679 MAPK9 mitogen-activated protein kinase 9 2 2
MIRT450206 ABHD15 abhydrolase domain containing 15 2 2
MIRT486621 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT489267 TTLL1 tubulin tyrosine ligase like 1 2 2
MIRT493117 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 4
MIRT494570 BAK1 BCL2 antagonist/killer 1 2 2
MIRT497395 RALY RALY heterogeneous nuclear ribonucleoprotein 2 2
MIRT504900 CCDC86 coiled-coil domain containing 86 2 2
MIRT505192 USP46 ubiquitin specific peptidase 46 2 4
MIRT506522 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 6
MIRT508162 ABCC5 ATP binding cassette subfamily C member 5 2 8
MIRT508545 PARVG parvin gamma 2 4
MIRT509850 BIRC5 baculoviral IAP repeat containing 5 2 6
MIRT510088 PPWD1 peptidylprolyl isomerase domain and WD repeat containing 1 2 8
MIRT512094 CRK CRK proto-oncogene, adaptor protein 2 4
MIRT515381 RPL7 ribosomal protein L7 2 2
MIRT519176 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT519964 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT522292 NKAP NFKB activating protein 2 2
MIRT523160 HMGB2 high mobility group box 2 2 4
MIRT525314 FANCA Fanconi anemia complementation group A 2 2
MIRT528194 PLEKHM2 pleckstrin homology and RUN domain containing M2 2 2
MIRT532885 ZNF451 zinc finger protein 451 2 2
MIRT538209 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT539497 ACTN4 actinin alpha 4 2 2
MIRT554600 RRAGC Ras related GTP binding C 2 2
MIRT562444 DCTN6 dynactin subunit 6 2 2
MIRT562748 AOC3 amine oxidase, copper containing 3 2 2
MIRT565798 SEC14L5 SEC14 like lipid binding 5 2 2
MIRT565838 SCML2 Scm polycomb group protein like 2 2 2
MIRT566072 RCC2 regulator of chromosome condensation 2 2 2
MIRT566104 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 2
MIRT572407 MRPS14 mitochondrial ribosomal protein S14 2 2
MIRT576198 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576313 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576651 Mill2 MHC I like leukocyte 2 1 1
MIRT576859 Socs6 suppressor of cytokine signaling 6 2 2
MIRT606819 BICD2 BICD cargo adaptor 2 2 2
MIRT610738 NUDT16 nudix hydrolase 16 2 4
MIRT614798 RORA RAR related orphan receptor A 2 2
MIRT619006 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 2
MIRT619420 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT620405 MYO1H myosin IH 2 2
MIRT624869 ABHD13 abhydrolase domain containing 13 2 2
MIRT633527 ZFP30 ZFP30 zinc finger protein 2 2
MIRT633927 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT636611 CLIC5 chloride intracellular channel 5 2 2
MIRT640616 MIOX myo-inositol oxygenase 2 2
MIRT642605 C14orf180 chromosome 14 open reading frame 180 2 2
MIRT644624 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT655113 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT658976 DNAJB5 DnaJ heat shock protein family (Hsp40) member B5 2 4
MIRT661495 CHMP1B charged multivesicular body protein 1B 2 2
MIRT662996 TMEM59 transmembrane protein 59 2 2
MIRT663075 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT665405 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT666106 SSR1 signal sequence receptor subunit 1 2 2
MIRT669562 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT670070 ZNF783 zinc finger family member 783 2 2
MIRT671192 ZNF891 zinc finger protein 891 2 2
MIRT675361 KLHL26 kelch like family member 26 2 2
MIRT678857 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT679443 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT684163 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT684543 ZNF460 zinc finger protein 460 2 2
MIRT684674 SLC2A11 solute carrier family 2 member 11 2 2
MIRT684971 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT686006 NEK4 NIMA related kinase 4 2 2
MIRT687758 KIAA1328 KIAA1328 2 2
MIRT688961 ATXN3 ataxin 3 2 2
MIRT689409 UQCR11 ubiquinol-cytochrome c reductase, complex III subunit XI 2 2
MIRT690001 MMP17 matrix metallopeptidase 17 2 2
MIRT690165 ELP3 elongator acetyltransferase complex subunit 3 2 2
MIRT690202 C5orf45 MRN complex interacting protein 2 2
MIRT690477 ZNF33A zinc finger protein 33A 2 2
MIRT690566 MICA MHC class I polypeptide-related sequence A 2 2
MIRT692160 C10orf111 chromosome 10 open reading frame 111 2 2
MIRT693430 PLGLB2 plasminogen-like B2 2 2
MIRT693547 ZNF708 zinc finger protein 708 2 2
MIRT693697 PLGLB1 plasminogen-like B1 2 2
MIRT695006 HSPA6 heat shock protein family A (Hsp70) member 6 2 2
MIRT698525 TFRC transferrin receptor 2 2
MIRT699574 SIKE1 suppressor of IKBKE 1 2 2
MIRT703446 FYTTD1 forty-two-three domain containing 1 2 2
MIRT704397 CTSS cathepsin S 2 2
MIRT704485 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT709822 STPG1 sperm tail PG-rich repeat containing 1 2 2
MIRT710859 COQ7 coenzyme Q7, hydroxylase 2 2
MIRT711893 INSIG2 insulin induced gene 2 2 2
MIRT713796 CPLX2 complexin 2 2 2
MIRT718800 C1GALT1C1 C1GALT1 specific chaperone 1 2 2
MIRT719501 SEC24B SEC24 homolog B, COPII coat complex component 2 2
MIRT719722 PDE6B phosphodiesterase 6B 2 2
MIRT722204 URM1 ubiquitin related modifier 1 2 2
MIRT723523 CLPTM1L CLPTM1 like 2 2
MIRT725471 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3622b-3p Platinum 23939 sensitive tissue
hsa-miR-3622b-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3622b-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-3622b-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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