pre-miRNA Information
pre-miRNA hsa-mir-2355   
Genomic Coordinates chr2: 207109987 - 207110073
Description Homo sapiens miR-2355 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-2355-5p
Sequence 11| AUCCCCAGAUACAAUGGACAA |31
Evidence Experimental
Experiments SOLiD
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 1 2 - 207110063 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1268296297 4 dbSNP
rs1361046879 5 dbSNP
rs1219551997 6 dbSNP
rs1295756820 12 dbSNP
rs1345273529 15 dbSNP
rs977145706 15 dbSNP
rs1209629984 20 dbSNP
rs759940260 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PIGA   
Synonyms GPI3, MCAHS2, PIG-A, PNH1
Description phosphatidylinositol glycan anchor biosynthesis class A
Transcript NM_002641   
Other Transcripts NM_020473   
Expression
Putative miRNA Targets on PIGA
3'UTR of PIGA
(miRNA target sites are highlighted)
>PIGA|NM_002641|3'UTR
   1 AAGGAAGCCTAGATTGTAAGATTTTAAACATTTGTAATAGTTCTATAAAGACTATGGAAAATAACCTTGCTTTTGGGGGG
  81 TTTTTGTTTTTTTAGAGTTAATTTAGTAAGTTATGCTACCTCTATATCATTCAATATTTTCTGTTGAGGAAAGATAAAAA
 161 TGTATGCAATTCCTGAGTGTAGAAACTTCTTGCACTTATTTAAAATTTAGGAGAGAACATTTAAGCCACTCAGGTATGCA
 241 ATTTTTCAGACTACTGAAATCCCTGTAGCAGAGATGTTTTAACATTATATTTTGAGAGCTTTGGGTGCTGAAGGGCCAAA
 321 CGTTTTCTGGGCATTTTTTGGCCAGTTTTTAATGTAACACCATTAGACACTCACCAGATGTTTACAAGTTTTCTTTAGGG
 401 GAACTACAACAATTATATGAACTGTTTTATATCATGTTCATATACATTTATTAGGAATCTAAATCATGTCTTTGAACATT
 481 TATTAGGTTCACTCAGTAGGTGTTACATGTAATTAACAGGTTCCTTGAGTAAGATAGTCCATCAGTTACCAGCACATTTT
 561 GAACCCCTGCTCTGTGTAGAATGTTGAACTAGATGCTTCCCGCCATTAAGGACCAGGGGTGCATTCACTCTTTGTTTACC
 641 ATTCAAATGGCTTACTTCATCATAATTGTGGTTGATATGAGATCAATATCCAACATGCCAAAAATGCTCATGCCAGTTAA
 721 TGCCAGGAAAAAAATCACCGACACACTACTAGTACTTTGTTCCTGTTGTATGCATTCTCCTAGGTAGAGCCTCCATCTTC
 801 AGTTGTGTTTGTGAAGGTATTTTTTGCTTTTTAAATACTGGGGACCGATATCACTGTTGATAGTGCAGAGAAACCCTCCA
 881 CATTTTTCAGTGCATAATTGAGTTTTCTATAAATGCCTTCGTGTTTTCTGAGCAGAATGTACGAGGTGTGCCATCCCAAA
 961 ACCAGCTGCTACCCTGTCCTTTTAATGTAAGTCACTCCCCTTCACTGTGGCCTCGCTGATGTCTGATAAGTATTGTCAGT
1041 GTGCAAAAGGCTTTACTTCAGAATGGTTTATTTATAGCAAACTAAGTTGAAAATTTTAGAAACAGTCTTTGTGGGTGGAT
1121 GTTATTAACTGTCATTGTTGTTGCCCAGAGCCATGGGTTTTTTAACCCCAAATTATCCACATGGTGTGTATTATGAATTC
1201 TTTGAACTCTTAAGGTTTTTGTGAGAAAAGGACTGTGAATTCAAAACAATAAGGCACTTGTGGGTGCACTACATAGATTC
1281 TGACAGTGTTGTGATTCTGTATAGGATTTTTAAAAATGACAACATTCACAAAATTTATTACTTTTTAAAAAATAACATGC
1361 CTATTAACTGGTTGCACTGATATAAAAGAAATATATTTGTGTTTTGTTTGTACTAAAATGCAAAAGCAAGAGTGCAATTT
1441 TTAAAATCTAGAAGTTAGGGGTTTTGTTGGAGAAAAATGGACTGATCTTTAAACTATTCAGTCTTACTGGGATTTTTATG
1521 CATAGAAACTCACATATAAACATGAAATAAACAGTGCCAGTATTCATAGGAAAGTGAGAAACTGTAATATTTGGCCATTA
1601 TTCTATTCAACAGGTTTTAGAGGCATGCCACCATTTTTTCCTTATATTTTTGCTTAATTTTTTTAAATTGTCATTTAATT
1681 CTTAAACTGTCATTTATTTGAGATGGAAATAAGATCTAAAGTTAGTTGCCTTTGCCTGTAAAACATGTGATTTGCAAATT
1761 ATTATTTTTCTTTTTTTTAACAAATGGAAGTAAATTTGTTTCACGTAAATCTTAATTTTCAACCTTTCTGGATACCTTAA
1841 TTGTAACTGTCAGTTTGCACTGGTCGGTATATGGAAACACATTGCTCTACCCTGCTACTTAGTTGATTTTAAAGTGAATT
1921 TACAGTGATGAGAAATTTGTGAAAAATATATTGTATTTCTTTTGATGTTTCAAAAGGTTGCCTATGAAAAACTGATTTGT
2001 TAAAACATGCTACATGTCCAAAAATAAAGACCAGAATGACATTTTGATAATTTTCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aacAGGUAACA--UA-GACCCCUa 5'
             | | || |  || ||||||| 
Target 5' tttTGCTTTTTAAATACTGGGGAc 3'
822 - 845 148.00 -12.40
2
miRNA  3' aacagGUAACAUAGACCCCUa 5'
               | |||  |:|||||: 
Target 5' aataaCCTTGCTTTTGGGGGg 3'
60 - 80 124.00 -15.70
3
miRNA  3' aacagGUAACAUAGACCCCUa 5'
               |:|| | |||||| | 
Target 5' ccaaaCGTT-T-TCTGGGCAt 3'
316 - 334 118.00 -10.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
383130 7 ClinVar
1185707 289 ClinVar
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1343536588 4 dbSNP
rs142178534 7 dbSNP
rs756816136 12 dbSNP
rs1246449176 13 dbSNP
rs749702985 15 dbSNP
rs773967133 18 dbSNP
rs1323393910 20 dbSNP
rs1264977929 29 dbSNP
rs770570366 32 dbSNP
rs369011467 34 dbSNP
rs1487878386 37 dbSNP
rs1260333684 39 dbSNP
rs148660178 40 dbSNP
rs373138445 43 dbSNP
rs1310709338 47 dbSNP
rs1233143839 51 dbSNP
rs184099983 55 dbSNP
rs1195308401 56 dbSNP
rs920567695 57 dbSNP
rs758351965 58 dbSNP
rs962072746 71 dbSNP
rs1398004884 74 dbSNP
rs1463659436 80 dbSNP
rs192931358 81 dbSNP
rs202201866 86 dbSNP
rs1415469996 109 dbSNP
rs1024326491 113 dbSNP
rs1329801888 115 dbSNP
rs1233169261 119 dbSNP
rs1166459494 124 dbSNP
rs1341538486 125 dbSNP
rs1014071560 128 dbSNP
rs958525351 136 dbSNP
rs1034721128 143 dbSNP
rs1195210350 150 dbSNP
rs1265016547 157 dbSNP
rs1193792935 164 dbSNP
rs1374773992 168 dbSNP
rs35527052 174 dbSNP
rs1476537969 176 dbSNP
rs754782099 193 dbSNP
rs904197035 202 dbSNP
rs1195983100 215 dbSNP
rs1474252014 225 dbSNP
rs1295588900 234 dbSNP
rs1257146659 239 dbSNP
rs745960092 241 dbSNP
rs1386618181 247 dbSNP
rs1296889462 254 dbSNP
rs1444271971 257 dbSNP
rs1270653011 273 dbSNP
rs1010005996 276 dbSNP
rs1277668965 283 dbSNP
rs753691551 289 dbSNP
rs1259894438 293 dbSNP
rs900944529 315 dbSNP
rs1230987656 321 dbSNP
rs1488022846 331 dbSNP
rs1333518968 340 dbSNP
rs1040801000 352 dbSNP
rs1449796075 353 dbSNP
rs944888916 354 dbSNP
rs573699741 362 dbSNP
rs910718233 371 dbSNP
rs1327304003 382 dbSNP
rs1051121934 435 dbSNP
rs766651571 439 dbSNP
rs779382999 440 dbSNP
rs1457691020 442 dbSNP
rs1289846108 444 dbSNP
rs930875800 448 dbSNP
rs1398708319 450 dbSNP
rs920604330 465 dbSNP
rs1356171109 474 dbSNP
rs111750388 476 dbSNP
rs1230148557 479 dbSNP
rs756463073 481 dbSNP
rs1457162962 506 dbSNP
rs1401722640 515 dbSNP
rs757813269 516 dbSNP
rs1239442874 523 dbSNP
rs1287917133 526 dbSNP
rs763505154 538 dbSNP
rs1460002559 545 dbSNP
rs1258203987 553 dbSNP
rs1025465391 563 dbSNP
rs1179644602 579 dbSNP
rs1486351898 579 dbSNP
rs1254995066 593 dbSNP
rs1419326213 596 dbSNP
rs1160214646 600 dbSNP
rs1382557822 601 dbSNP
rs750515462 602 dbSNP
rs1158550531 605 dbSNP
rs917366465 615 dbSNP
rs1450251438 619 dbSNP
rs1301193408 623 dbSNP
rs1378647726 637 dbSNP
rs1165670805 641 dbSNP
rs1350250535 644 dbSNP
rs371654541 646 dbSNP
rs1473916872 647 dbSNP
rs1351220544 655 dbSNP
rs992870796 659 dbSNP
rs1280913705 664 dbSNP
rs1180884375 674 dbSNP
rs1313909072 691 dbSNP
rs1207353246 694 dbSNP
rs958536846 696 dbSNP
rs1480715582 701 dbSNP
rs1034154686 707 dbSNP
rs1438171160 709 dbSNP
rs1236044330 727 dbSNP
rs767538745 739 dbSNP
rs979101132 748 dbSNP
rs968642631 751 dbSNP
rs187040067 755 dbSNP
rs183106783 764 dbSNP
rs764404859 770 dbSNP
rs1173963399 774 dbSNP
rs1358652161 789 dbSNP
rs900828357 805 dbSNP
rs1333588822 806 dbSNP
rs1375001779 815 dbSNP
rs1019412438 821 dbSNP
rs1006605371 825 dbSNP
rs1273295763 838 dbSNP
rs889291189 846 dbSNP
rs190545953 847 dbSNP
rs1300586410 852 dbSNP
rs1307552222 859 dbSNP
rs73189542 880 dbSNP
rs774981815 890 dbSNP
rs1478850478 895 dbSNP
rs899444625 898 dbSNP
rs188058821 917 dbSNP
rs1036566021 921 dbSNP
rs1378104599 924 dbSNP
rs369091448 934 dbSNP
rs770553764 942 dbSNP
rs1429164489 946 dbSNP
rs746705485 954 dbSNP
rs1172942323 957 dbSNP
rs1398314077 964 dbSNP
rs1465310765 966 dbSNP
rs1439355973 973 dbSNP
rs878965379 976 dbSNP
rs1274156977 979 dbSNP
rs1394341894 981 dbSNP
rs1324330086 983 dbSNP
rs772745563 988 dbSNP
rs917210900 989 dbSNP
rs1275774224 990 dbSNP
rs992882512 1009 dbSNP
rs1233521914 1011 dbSNP
rs1291656953 1012 dbSNP
rs937414535 1014 dbSNP
rs927139616 1015 dbSNP
rs994432674 1025 dbSNP
rs978640033 1026 dbSNP
rs1406134209 1038 dbSNP
rs1488915014 1039 dbSNP
rs1158212445 1054 dbSNP
rs771529477 1063 dbSNP
rs1195860354 1071 dbSNP
rs1440485142 1074 dbSNP
rs968942309 1075 dbSNP
rs1020244446 1076 dbSNP
rs988722667 1082 dbSNP
rs747726050 1095 dbSNP
rs1191464473 1114 dbSNP
rs1403350523 1117 dbSNP
rs965044886 1121 dbSNP
rs375677883 1132 dbSNP
rs1345657640 1137 dbSNP
rs1019257139 1142 dbSNP
rs1296339175 1153 dbSNP
rs1253512072 1158 dbSNP
rs778929951 1164 dbSNP
rs1414923909 1168 dbSNP
rs1285564133 1170 dbSNP
rs1006656622 1178 dbSNP
rs1353851794 1181 dbSNP
rs889519112 1208 dbSNP
rs1444762085 1221 dbSNP
rs1283202593 1229 dbSNP
rs1289628521 1238 dbSNP
rs1205357438 1244 dbSNP
rs1219423768 1247 dbSNP
rs1355333504 1269 dbSNP
rs1487990524 1271 dbSNP
rs1027138089 1302 dbSNP
rs1311944664 1312 dbSNP
rs754979626 1322 dbSNP
rs1380681263 1325 dbSNP
rs1421351648 1347 dbSNP
rs1156750976 1348 dbSNP
rs995050623 1353 dbSNP
rs899327140 1357 dbSNP
rs1370972850 1358 dbSNP
rs1335644907 1361 dbSNP
rs1338274450 1376 dbSNP
rs1446838853 1378 dbSNP
rs1275948993 1382 dbSNP
rs1279838486 1386 dbSNP
rs1378091582 1388 dbSNP
rs1438784412 1390 dbSNP
rs1036575818 1409 dbSNP
rs773969356 1414 dbSNP
rs749082199 1418 dbSNP
rs780064238 1421 dbSNP
rs1362650950 1428 dbSNP
rs895837120 1434 dbSNP
rs1171566265 1437 dbSNP
rs1453547509 1443 dbSNP
rs1187093482 1446 dbSNP
rs1239072834 1458 dbSNP
rs1441286284 1469 dbSNP
rs1176581734 1487 dbSNP
rs1379554129 1497 dbSNP
rs1466498211 1500 dbSNP
rs1173748903 1501 dbSNP
rs1399424253 1506 dbSNP
rs1413466788 1507 dbSNP
rs1331581352 1516 dbSNP
rs1057038166 1520 dbSNP
rs756332722 1524 dbSNP
rs1192841223 1536 dbSNP
rs1474347356 1537 dbSNP
rs1241029761 1543 dbSNP
rs1376727164 1562 dbSNP
rs766395498 1580 dbSNP
rs763023554 1600 dbSNP
rs1216636291 1625 dbSNP
rs3661 1626 dbSNP
rs1277725416 1629 dbSNP
rs1209254520 1640 dbSNP
rs1347604281 1641 dbSNP
rs1279704850 1644 dbSNP
rs1277179160 1645 dbSNP
rs1221451456 1646 dbSNP
rs1342936139 1664 dbSNP
rs1199986430 1684 dbSNP
rs769661877 1711 dbSNP
rs937323230 1717 dbSNP
rs1196461011 1718 dbSNP
rs1269708211 1723 dbSNP
rs1400655789 1724 dbSNP
rs1342662723 1730 dbSNP
rs1311271664 1734 dbSNP
rs1375908660 1738 dbSNP
rs1477391452 1745 dbSNP
rs3087965 1746 dbSNP
rs1401952851 1747 dbSNP
rs1463738376 1748 dbSNP
rs775505176 1750 dbSNP
rs1177895186 1753 dbSNP
rs1387755209 1754 dbSNP
rs1326070957 1767 dbSNP
rs866118932 1769 dbSNP
rs868439892 1770 dbSNP
rs1329886955 1771 dbSNP
rs11448948 1779 dbSNP
rs1222924707 1779 dbSNP
rs397950456 1779 dbSNP
rs776526231 1779 dbSNP
rs866676505 1779 dbSNP
rs1217032406 1794 dbSNP
rs927427928 1804 dbSNP
rs1193818258 1805 dbSNP
rs1478510157 1812 dbSNP
rs1265133246 1822 dbSNP
rs1804165 1823 dbSNP
rs1450987101 1827 dbSNP
rs184041443 1832 dbSNP
rs1425143495 1840 dbSNP
rs1476587089 1848 dbSNP
rs1169485858 1857 dbSNP
rs1368722683 1865 dbSNP
rs1186789172 1866 dbSNP
rs1389138744 1871 dbSNP
rs1404887900 1880 dbSNP
rs1299418194 1882 dbSNP
rs772400499 1891 dbSNP
rs763505541 1893 dbSNP
rs1322586217 1902 dbSNP
rs1246652746 1914 dbSNP
rs1483342111 1930 dbSNP
rs775827251 1947 dbSNP
rs1217229944 1949 dbSNP
rs1265305583 1959 dbSNP
rs1487003262 1962 dbSNP
rs1192336295 1964 dbSNP
rs745917030 1973 dbSNP
rs765630620 1984 dbSNP
rs1167270760 1992 dbSNP
rs1272892235 2013 dbSNP
rs3434 2014 dbSNP
rs1363052527 2021 dbSNP
rs1417898308 2035 dbSNP
rs1320085014 2046 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' aacagguAACAUA-GACCCCUa 5'
                 ||  || ||||||| 
Target 5' ---cuuuUUAAAUACUGGGGAc 3'
1 - 19
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_020473 | 3UTR | AUUUUUUGCUUUUUAAAUACUGGGGACCGAUAUCACUGUUGAUAGUGCAGAGAAACCCUCCACAUUUUUCAGUGCAUAAUUGAGUUUUCUAUAAAUGCCUUCGUGUUUUCUGAGCAGAAUGUACGAGGUGUGCCAUCCCAAAACCAGCUGCUACCCUGUCCUUUUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_020473 | 3UTR | GGGGACCGAUAUCACUGUUGAUAGUGCAGAGAAACCCUCCACAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_020473 | 3UTR | CUUUUUAAAUACUGGGGACCGAUAUCACUGUUGAUAGUGCAGAGAAACCCUCCACAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000542278.1 | 3UTR | CUUUUUAAAUACUGGGGACCG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000542278.1 | 3UTR | CUUUUUAAAUACUGGGGACCGAUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
THCA 0.26 0.02 0.256 0.03 59 Click to see details
PRAD -0.226 0.06 -0.315 0.01 50 Click to see details
KICH -0.283 0.09 -0.112 0.3 25 Click to see details
BLCA 0.305 0.11 0.344 0.08 18 Click to see details
LUSC 0.183 0.14 0.170 0.15 38 Click to see details
PCPG 0.889 0.15 1.000 0.5 3 Click to see details
STAD 0.181 0.16 0.209 0.13 32 Click to see details
LUAD -0.312 0.16 -0.406 0.1 12 Click to see details
BRCA -0.1 0.18 -0.078 0.24 84 Click to see details
ESCA -0.249 0.23 -0.282 0.2 11 Click to see details
KIRP -0.134 0.23 -0.104 0.29 32 Click to see details
LIHC 0.105 0.24 0.098 0.25 49 Click to see details
UCEC -0.17 0.24 -0.239 0.16 19 Click to see details
HNSC -0.109 0.25 -0.166 0.15 42 Click to see details
CHOL -0.243 0.26 -0.267 0.24 9 Click to see details
KIRC 0.069 0.29 0.097 0.22 68 Click to see details
CESC 0.263 0.42 0.500 0.33 3 Click to see details
PAAD 0.031 0.48 0.000 0.5 4 Click to see details
PAAD 0.031 0.48 0.000 0.5 4 Click to see details
164 hsa-miR-2355-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT190653 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT286477 TAOK1 TAO kinase 1 2 4
MIRT318993 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT345622 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT442513 SYT7 synaptotagmin 7 2 4
MIRT444247 CTNND1 catenin delta 1 2 2
MIRT444780 ECE1 endothelin converting enzyme 1 2 2
MIRT456525 TMEM63A transmembrane protein 63A 2 2
MIRT468960 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT469834 R3HDM4 R3H domain containing 4 2 2
MIRT470027 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT471167 PHB2 prohibitin 2 2 2
MIRT475819 HDGF heparin binding growth factor 2 4
MIRT479389 CDKN1B cyclin dependent kinase inhibitor 1B 2 6
MIRT481747 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT485220 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT487259 CCNF cyclin F 2 2
MIRT489971 MCC mutated in colorectal cancers 2 4
MIRT491399 C1D C1D nuclear receptor corepressor 2 2
MIRT494959 CCDC144A coiled-coil domain containing 144A 2 4
MIRT494979 PPP5D1 PPP5 tetratricopeptide repeat domain containing 1 2 2
MIRT495225 CHST14 carbohydrate sulfotransferase 14 2 2
MIRT496550 TBX15 T-box 15 2 2
MIRT501612 PISD phosphatidylserine decarboxylase 2 2
MIRT509393 TRIM24 tripartite motif containing 24 2 2
MIRT519616 ZNF788 zinc finger family member 788 2 4
MIRT519738 ZNF394 zinc finger protein 394 2 4
MIRT521230 SAR1A secretion associated Ras related GTPase 1A 2 4
MIRT521801 POM121C POM121 transmembrane nucleoporin C 2 2
MIRT526233 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT526932 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT529189 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT529329 ZNF649 zinc finger protein 649 2 2
MIRT529698 MRPL30 mitochondrial ribosomal protein L30 2 2
MIRT529921 TOP1MT DNA topoisomerase I mitochondrial 2 2
MIRT530032 SMC1A structural maintenance of chromosomes 1A 2 2
MIRT530898 C9orf3 chromosome 9 open reading frame 3 2 2
MIRT531621 TM4SF5 transmembrane 4 L six family member 5 2 4
MIRT533132 XIAP X-linked inhibitor of apoptosis 2 2
MIRT533210 WAPAL WAPL cohesin release factor 2 2
MIRT534058 ST6GALNAC3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 2 2
MIRT535487 PARVB parvin beta 2 2
MIRT536749 HOXD9 homeobox D9 2 2
MIRT551456 CARKD NAD(P)HX dehydratase 2 2
MIRT551858 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT552095 FAM8A1 family with sequence similarity 8 member A1 2 2
MIRT552332 ZNF704 zinc finger protein 704 2 2
MIRT552549 ZFP36L2 ZFP36 ring finger protein like 2 2 2
MIRT561505 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT562702 ZNF415 zinc finger protein 415 2 2
MIRT563052 ZNF138 zinc finger protein 138 2 2
MIRT564592 ZNF791 zinc finger protein 791 2 2
MIRT566422 PIGA phosphatidylinositol glycan anchor biosynthesis class A 2 2
MIRT570176 RCBTB1 RCC1 and BTB domain containing protein 1 2 2
MIRT570866 ZNF525 zinc finger protein 525 2 2
MIRT570875 ZFP1 ZFP1 zinc finger protein 2 2
MIRT571517 ZNF625 zinc finger protein 625 2 2
MIRT572551 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT610894 HINFP histone H4 transcription factor 2 2
MIRT611037 PTGES prostaglandin E synthase 2 2
MIRT611479 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT612419 SP1 Sp1 transcription factor 2 2
MIRT614478 FRMPD3 FERM and PDZ domain containing 3 2 2
MIRT616318 CACNA1A calcium voltage-gated channel subunit alpha1 A 2 2
MIRT616929 ZNF638 zinc finger protein 638 2 2
MIRT618131 GABARAPL3 GABA type A receptor associated protein like 3 pseudogene 2 2
MIRT618452 ZFP30 ZFP30 zinc finger protein 2 4
MIRT620671 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT620713 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT621126 EMC7 ER membrane protein complex subunit 7 2 4
MIRT621443 TOMM22 translocase of outer mitochondrial membrane 22 2 2
MIRT623491 KCTD11 potassium channel tetramerization domain containing 11 2 2
MIRT623783 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT623918 FNBP1L formin binding protein 1 like 2 2
MIRT625723 CXorf38 chromosome X open reading frame 38 2 2
MIRT625778 GCNT1 glucosaminyl (N-acetyl) transferase 1, core 2 2 2
MIRT626940 TTR transthyretin 2 2
MIRT627357 TSC22D2 TSC22 domain family member 2 2 2
MIRT632078 ALDH1A2 aldehyde dehydrogenase 1 family member A2 2 2
MIRT633361 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT639793 MVK mevalonate kinase 2 2
MIRT643761 NAGK N-acetylglucosamine kinase 2 2
MIRT644358 NDUFAF6 NADH:ubiquinone oxidoreductase complex assembly factor 6 2 2
MIRT645558 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT646588 ANKRD36 ankyrin repeat domain 36 2 2
MIRT646631 SLC25A46 solute carrier family 25 member 46 2 2
MIRT648066 HSPA6 heat shock protein family A (Hsp70) member 6 2 2
MIRT648142 SUCLG2 succinate-CoA ligase GDP-forming beta subunit 2 2
MIRT648416 MYOZ3 myozenin 3 2 2
MIRT649218 AMMECR1L AMMECR1 like 2 2
MIRT649772 MRPS27 mitochondrial ribosomal protein S27 2 4
MIRT650510 UFM1 ubiquitin fold modifier 1 2 2
MIRT651007 ZNF740 zinc finger protein 740 2 2
MIRT651524 WNT2B Wnt family member 2B 2 2
MIRT652014 TTYH3 tweety family member 3 2 2
MIRT652513 TMEM109 transmembrane protein 109 2 2
MIRT652686 THUMPD3 THUMP domain containing 3 2 2
MIRT652772 TENM3 teneurin transmembrane protein 3 2 2
MIRT653160 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT653765 SIX5 SIX homeobox 5 2 2
MIRT653792 SIRPA signal regulatory protein alpha 2 2
MIRT655649 OAZ2 ornithine decarboxylase antizyme 2 2 2
MIRT656263 MEX3A mex-3 RNA binding family member A 2 2
MIRT657044 KCNH6 potassium voltage-gated channel subfamily H member 6 2 2
MIRT657375 HMGA1 high mobility group AT-hook 1 2 2
MIRT657532 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT657542 GSTO2 glutathione S-transferase omega 2 2 2
MIRT657828 GJD3 gap junction protein delta 3 2 2
MIRT658946 DOK6 docking protein 6 2 2
MIRT660363 BACH2 BTB domain and CNC homolog 2 2 2
MIRT660406 ATXN7L3 ataxin 7 like 3 2 2
MIRT660948 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT661031 AAK1 AP2 associated kinase 1 2 2
MIRT662435 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT668419 FAM217B family with sequence similarity 217 member B 2 2
MIRT669332 BSND barttin CLCNK type accessory beta subunit 2 2
MIRT676105 CLUAP1 clusterin associated protein 1 2 2
MIRT677084 SMIM15 small integral membrane protein 15 2 2
MIRT677127 OGFOD3 2-oxoglutarate and iron dependent oxygenase domain containing 3 2 2
MIRT678001 CPM carboxypeptidase M 2 2
MIRT678531 TMEM78 transmembrane protein 78 2 2
MIRT680000 ZNF860 zinc finger protein 860 2 2
MIRT680098 PXMP4 peroxisomal membrane protein 4 2 2
MIRT686795 SOX12 SRY-box 12 2 2
MIRT698887 SPTBN2 spectrin beta, non-erythrocytic 2 2 2
MIRT699371 SLC30A6 solute carrier family 30 member 6 2 2
MIRT702005 MIDN midnolin 2 2
MIRT708101 IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 2 2
MIRT709563 GYG2 glycogenin 2 2 2
MIRT710559 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT710585 CDCA4 cell division cycle associated 4 2 2
MIRT710873 NT5DC1 5'-nucleotidase domain containing 1 2 2
MIRT711876 VASP vasodilator stimulated phosphoprotein 2 2
MIRT712226 RIMS3 regulating synaptic membrane exocytosis 3 2 2
MIRT713211 FAM13A family with sequence similarity 13 member A 2 2
MIRT713261 GPR55 G protein-coupled receptor 55 2 2
MIRT713327 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT713889 RNF19B ring finger protein 19B 2 2
MIRT714015 UBAP2L ubiquitin associated protein 2 like 2 2
MIRT714202 NLRP12 NLR family pyrin domain containing 12 2 2
MIRT714717 VPS8 VPS8, CORVET complex subunit 2 2
MIRT714748 ZNF385D zinc finger protein 385D 2 2
MIRT714806 ARHGEF19 Rho guanine nucleotide exchange factor 19 2 2
MIRT714852 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT715717 MRPL4 mitochondrial ribosomal protein L4 2 2
MIRT715852 GRIN2A glutamate ionotropic receptor NMDA type subunit 2A 2 2
MIRT716853 MFSD12 major facilitator superfamily domain containing 12 2 2
MIRT717134 EBPL emopamil binding protein like 2 2
MIRT717248 TMEM246 transmembrane protein 246 2 2
MIRT717997 ZNF79 zinc finger protein 79 2 2
MIRT718341 PURA purine rich element binding protein A 2 2
MIRT719587 TFCP2L1 transcription factor CP2 like 1 2 2
MIRT720520 PTGR2 prostaglandin reductase 2 2 2
MIRT720671 SLC39A13 solute carrier family 39 member 13 2 2
MIRT721213 DCLK3 doublecortin like kinase 3 2 2
MIRT721757 INF2 inverted formin, FH2 and WH2 domain containing 2 2
MIRT721826 POU6F1 POU class 6 homeobox 1 2 2
MIRT722091 SUSD1 sushi domain containing 1 2 2
MIRT722275 LURAP1 leucine rich adaptor protein 1 2 2
MIRT722802 ARHGAP19 Rho GTPase activating protein 19 2 2
MIRT722866 FAM212B family with sequence similarity 212 member B 2 2
MIRT723113 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT724378 NEK8 NIMA related kinase 8 2 2
MIRT732775 PYCR1 pyrroline-5-carboxylate reductase 1 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-2355 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-2355-5p Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-2355-5p Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-2355-5p Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved resistant High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-2355-5p Gefitinib 123631 NSC715055 approved resistant High Non-Small Cell Lung Cancer cell line (A549, HCC827)
hsa-miR-2355-5p Temozolomide 5394 NSC362856 approved resistant High Glioma tissue
hsa-miR-2355-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-2355-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-2355-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-2355-5p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-2355-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (TOV-112D)
hsa-miR-2355-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (OVSAHO)

Error report submission