pre-miRNA Information
pre-miRNA hsa-mir-569   
Genomic Coordinates chr3: 171106664 - 171106759
Synonyms MIRN569, hsa-mir-569, MIR569
Description Homo sapiens miR-569 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-569
Sequence 61| AGUUAAUGAAUCCUGGAAAGU |81
Evidence Experimental
Experiments SAGE
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN23021417 4 COSMIC
COSN1083370 8 COSMIC
COSN30455038 12 COSMIC
COSN24300323 13 COSMIC
COSN32068274 16 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs752673293 5 dbSNP
rs1218920077 8 dbSNP
rs745722313 12 dbSNP
rs1368837885 14 dbSNP
Putative Targets

Gene Information
Gene Symbol MSL2   
Synonyms MSL-2, MSL2L1, RNF184
Description MSL complex subunit 2
Transcript NM_001145417   
Other Transcripts NM_018133   
Expression
Putative miRNA Targets on MSL2
3'UTR of MSL2
(miRNA target sites are highlighted)
>MSL2|NM_001145417|3'UTR
   1 ATCAGTGGGTCTTTTAAACCTACTCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCTATGGTTCTGTTGGTTTAACTT
  81 GCCGGAGCTCCTGCATATAGATCACTTGTATCAAGTGTTTTCATTGCTAAGTTATATGTGTTAGTGTCGGGGAAATAGTT
 161 TGCAGATAATGGAGGAGTAACCCTACAACTATATGTCCTTAGTTCTTACAGAACCTCATAGTTTGAGAACAAAGCTGATG
 241 CAACTGATTTATACAAAATGAACTTTGGCAAGAAAAATAACATTAACCTCATTGTTTATGGCCATGCTTTGTGCATAATC
 321 AAAGTTTATGATTAAATGTAAGGAAGTGGTATCTAGTCAGTCCATAAAGATTGTGCTAATTTTTTTGTGGAAAAGTAGCC
 401 ATTAGTTCAGGAAACTCAGTGCTGCCTTCAGATGTCATTGATGTTTCTCCTGTTGGAAAGCTGATGTGTCCAGCTCAACC
 481 TTTGTGCTGACATCATACCATTTCTGATCATGAAATATTGGCTACTGGTGTATGTAGCAGTTCTTAAATCAGCAGTATTA
 561 TGAAAAAAAATTCCCCCTCATTAGAATGTTTAAGAAATCTTTTTAAAAAGTAAAATTCTGTCAGACTACAAATGTTTAGC
 641 TGTTACTCATTTCTAGGGAAGAAATTCTAAATCCCTCCTTCACTTTGAGCAGTGTTCTAATTGGATAAATGAAGGAGAGT
 721 AGTTTTATTCTGAAGGTAATTAAATTTAGACTATGTAGTATGTGACAGAATTTTTTTAAAATTATAAAAAGATTTTATTT
 801 AGTAATTGGGATTTACTTAAAATAATTTTGGAATAATGCTCCCAGACTTGCCCAGATTTGTGTATTGTACTTATTGCCAC
 881 TGGCCGCCACTTTGACTTATTTTCTCTAATAGTTTATTTGCCACAGTCTTTATTTTGAATATGCTCCTAGTTTTTTTTTA
 961 GGGTGCTGTTCATTATGAAGGCTTCTTTATAGAGGCCTAATAAGAATGCCTTTTTATAAAGCCTGTGCATTTAGGTAGGT
1041 TGAAGCTAGGAGGATTTTCTTTAGAATGCTCTTTTGCATGTAAAGCACAAAGTATGTTTCAGTTTAAATGCACTTCTTCC
1121 GGTTAATTTTTATGGGGAAGACAAGTGAGTCACAAACATTCTGTTGAAGGGAAATCTAGTCAGTTGCTTGAAAGAGCACA
1201 GCCCAAATAAAACAAGGACTGACTAGGTGTAATGAAATAACCTGTGATTTAAAAGAAGAGCTGCAGCTTTGACAGTGCTT
1281 ATTTAAAGAAAAATACTGCTGGAAAATTTCCAATTTCTACTACGTTCACCATCTCTAGTAAGATCTGACATATGCTGAAG
1361 TTATGTTTTGATTTGGCACACAGCATGTTCAATGATGGTTACTCGCCTAGTACAAGACATGGAGAAGAAACCTTTGGACA
1441 CAGAGCAGATGACACCTCCTTCTGTTTTGTAGTGTATCCTGGTGTCATTTTCTGTGAATGTGGTCAGGTAGAGTTGTTTT
1521 TGTTGTTGTTGTTGGGCTTTTTTTTCTTTTTTTTTTTTTGGTCTCTTTTGGTGGGGTGGGGGTGGGCTAAAGCCATAGGA
1601 AGAAAAATGTGATGTATGTGTCCAGTATGTACTATTTTGTTTTTGTTTTGCAAGAAGAGTTGAACTATTTTTGATAACAA
1681 GAGTAAATGGTGGAAAATGCTTCTTAGTTGTCTTGTCTTTATTTGCTTTCCAAGATTTGGAATTTTATTTAATTCCTTTA
1761 AGTGTTAGCAGTGTCTTATGAAACGTGTATTTACCTAACGTTTGTAACAGTTTTGTGTTGAACCCAGATGCCCTGCTATA
1841 TAAAGTTGTAAATCTGTTCTTTATTCACTAATGATCACTGCAAAAATGATTAGAAATGAGATTGTACACATGGATGAGGA
1921 TATATTTTGCAAATCGACCAAACTTTCCTAATATTATGATCTTAAAATTCATAGAGTACTTTATTGCTTCCCAAGTTTGA
2001 TAATCTTGTGGGTTTTTTTTTTTTTTTGATGCATGGGAGGTTGGCAATATAGACAAAGTGGAAATCATTAGTATGTGAGG
2081 GCCTTGATTGTTATGTAATATTGCCAATGATGAATTCAGGTTGTTTTTAGCACAAGTTTCTCTTTTTTATGCTGGTATTC
2161 TCACTGCCACATTTTTGGAAACCTGTATTACACCTTAAATCTATCAATAAATGATAGTTTTCTAATTCT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugAAA--GGUC---CUA-AGUAAUUGa 5'
            |||  | ||    ||  ||||||| 
Target 5' acTTTGGCAAGAAAAATAACATTAACc 3'
262 - 288 141.00 -5.50
2
miRNA  3' ugaaAGGUCCUA-AGUAAUUGa 5'
              |:|| ||| |||||:|: 
Target 5' tgccTTCA-GATGTCATTGATg 3'
423 - 443 128.00 -9.00
3
miRNA  3' ugAAAGGUCC-----UAAGUAAUuga 5'
            |||::|||     :|||||||   
Target 5' ttTTTTTAGGGTGCTGTTCATTAtga 3'
953 - 978 127.00 -10.82
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30494744 51 COSMIC
COSN30455249 53 COSMIC
COSN30122302 54 COSMIC
COSN30740718 84 COSMIC
COSN31506804 84 COSMIC
COSN31484990 103 COSMIC
COSN30146424 112 COSMIC
COSN30148081 129 COSMIC
COSN31535797 148 COSMIC
COSN30525698 173 COSMIC
COSN26487885 210 COSMIC
COSN26564547 269 COSMIC
COSN5521112 283 COSMIC
COSN5521111 292 COSMIC
COSN31579732 379 COSMIC
COSN20090901 382 COSMIC
COSN30542401 384 COSMIC
COSN21470867 432 COSMIC
COSN31546986 455 COSMIC
COSN31488198 494 COSMIC
COSN30161462 512 COSMIC
COSN31594744 562 COSMIC
COSN14925621 661 COSMIC
COSN31571100 663 COSMIC
COSN31582601 787 COSMIC
COSN30545383 823 COSMIC
COSN25035798 926 COSMIC
COSN22869305 950 COSMIC
COSN31582487 950 COSMIC
COSN31550203 1068 COSMIC
COSN8488317 1287 COSMIC
COSN31483528 1313 COSMIC
COSN26159821 1426 COSMIC
COSN20090900 1546 COSMIC
COSN29076650 1546 COSMIC
COSN28950567 1547 COSMIC
COSN17861904 1553 COSMIC
COSN20099132 1612 COSMIC
COSN7819538 1633 COSMIC
COSN2495473 1664 COSMIC
COSN31596096 1903 COSMIC
COSN32222847 1919 COSMIC
COSN31571097 1936 COSMIC
COSN31549884 1982 COSMIC
COSN15934476 2013 COSMIC
COSN27267586 2013 COSMIC
COSN31595721 2165 COSMIC
COSN7819537 2189 COSMIC
COSN31519821 2213 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs975220888 11 dbSNP
rs1194689024 12 dbSNP
rs1223985638 14 dbSNP
rs1379538934 15 dbSNP
rs774239911 16 dbSNP
rs1347161613 19 dbSNP
rs201560494 20 dbSNP
rs781131902 22 dbSNP
rs768760109 24 dbSNP
rs1345467499 25 dbSNP
rs1250539454 27 dbSNP
rs746890019 28 dbSNP
rs749369636 28 dbSNP
rs1319845081 30 dbSNP
rs1398481066 35 dbSNP
rs187847060 37 dbSNP
rs1177793766 38 dbSNP
rs561838307 39 dbSNP
rs1427797751 44 dbSNP
rs750055667 51 dbSNP
rs770766416 52 dbSNP
rs1230609225 53 dbSNP
rs1047809988 54 dbSNP
rs1339452030 60 dbSNP
rs938646256 61 dbSNP
rs1256674401 62 dbSNP
rs1446576053 66 dbSNP
rs967055119 83 dbSNP
rs1024424587 84 dbSNP
rs537357571 84 dbSNP
rs1431867636 86 dbSNP
rs1248526194 89 dbSNP
rs1373902932 97 dbSNP
rs1478825099 98 dbSNP
rs1360214837 101 dbSNP
rs1314518700 119 dbSNP
rs1168658429 121 dbSNP
rs1397962161 135 dbSNP
rs542969011 135 dbSNP
rs574123873 136 dbSNP
rs1465048612 140 dbSNP
rs1293827605 144 dbSNP
rs560567425 148 dbSNP
rs540760884 160 dbSNP
rs993092073 161 dbSNP
rs1368007904 164 dbSNP
rs948975332 175 dbSNP
rs914732568 176 dbSNP
rs1219884022 181 dbSNP
rs1275772234 183 dbSNP
rs182056963 187 dbSNP
rs140186714 191 dbSNP
rs923646810 192 dbSNP
rs1209660351 193 dbSNP
rs977877181 194 dbSNP
rs1489404359 202 dbSNP
rs1191520421 210 dbSNP
rs954502497 218 dbSNP
rs1430475231 222 dbSNP
rs1165371336 224 dbSNP
rs1034482125 229 dbSNP
rs995018478 230 dbSNP
rs772828326 240 dbSNP
rs899225168 241 dbSNP
rs1360704121 249 dbSNP
rs1401471352 250 dbSNP
rs1014991698 251 dbSNP
rs1296036696 251 dbSNP
rs996035041 253 dbSNP
rs1396153154 254 dbSNP
rs1315398856 257 dbSNP
rs1320472710 266 dbSNP
rs865931362 290 dbSNP
rs1325112431 294 dbSNP
rs1424950020 296 dbSNP
rs1261686667 314 dbSNP
rs538056244 322 dbSNP
rs768947420 323 dbSNP
rs1005406929 332 dbSNP
rs1428020082 337 dbSNP
rs1016047036 338 dbSNP
rs1262805671 338 dbSNP
rs1451209469 339 dbSNP
rs539076668 340 dbSNP
rs777824416 344 dbSNP
rs1185658664 354 dbSNP
rs890455402 357 dbSNP
rs1006426322 360 dbSNP
rs1163729626 363 dbSNP
rs1380681083 373 dbSNP
rs1421347307 378 dbSNP
rs1156433544 379 dbSNP
rs1370052253 387 dbSNP
rs886280385 387 dbSNP
rs1448073635 394 dbSNP
rs1451912492 395 dbSNP
rs1052239361 401 dbSNP
rs1474300554 402 dbSNP
rs1248282328 409 dbSNP
rs148259011 424 dbSNP
rs1310712386 432 dbSNP
rs555825274 441 dbSNP
rs535078015 443 dbSNP
rs1002979494 444 dbSNP
rs1291075613 448 dbSNP
rs1039487401 450 dbSNP
rs756265149 455 dbSNP
rs1212260469 458 dbSNP
rs1254339581 463 dbSNP
rs1483006607 470 dbSNP
rs907186194 471 dbSNP
rs935816591 478 dbSNP
rs1441279820 480 dbSNP
rs189752561 481 dbSNP
rs1176577990 488 dbSNP
rs1379252328 491 dbSNP
rs1414691410 492 dbSNP
rs1177516945 494 dbSNP
rs925815623 495 dbSNP
rs1332598258 497 dbSNP
rs1403128613 498 dbSNP
rs1444968598 500 dbSNP
rs1309006232 501 dbSNP
rs977188090 505 dbSNP
rs1221153484 518 dbSNP
rs1299540648 520 dbSNP
rs945825611 524 dbSNP
rs916882736 530 dbSNP
rs546273750 533 dbSNP
rs1459051802 534 dbSNP
rs1196460995 543 dbSNP
rs748162650 550 dbSNP
rs1285643932 556 dbSNP
rs1054717693 561 dbSNP
rs1405130704 563 dbSNP
rs1192554077 566 dbSNP
rs1432053692 571 dbSNP
rs924817572 571 dbSNP
rs934790960 571 dbSNP
rs1464524789 572 dbSNP
rs539111197 573 dbSNP
rs1431120768 575 dbSNP
rs1439112769 576 dbSNP
rs1291969297 577 dbSNP
rs570475919 579 dbSNP
rs1354671239 581 dbSNP
rs1367205660 582 dbSNP
rs1219276947 589 dbSNP
rs973675904 589 dbSNP
rs1319819612 590 dbSNP
rs1169616321 591 dbSNP
rs1272273967 592 dbSNP
rs550704624 595 dbSNP
rs1015541705 597 dbSNP
rs1223538599 601 dbSNP
rs1244575136 603 dbSNP
rs964348018 609 dbSNP
rs1193672887 618 dbSNP
rs1425145460 619 dbSNP
rs1199920569 620 dbSNP
rs1004969309 630 dbSNP
rs890540688 631 dbSNP
rs1030299376 632 dbSNP
rs1415204761 637 dbSNP
rs1016099183 639 dbSNP
rs1480846200 648 dbSNP
rs1349458144 651 dbSNP
rs1400838898 653 dbSNP
rs1300350947 655 dbSNP
rs1006149298 656 dbSNP
rs1399527780 658 dbSNP
rs950579583 659 dbSNP
rs1026173533 667 dbSNP
rs1003358784 669 dbSNP
rs1287480726 673 dbSNP
rs996149948 675 dbSNP
rs1197603527 677 dbSNP
rs530629374 692 dbSNP
rs900532841 697 dbSNP
rs1191883247 704 dbSNP
rs1238506122 706 dbSNP
rs868448638 715 dbSNP
rs1044415617 716 dbSNP
rs1039580859 719 dbSNP
rs935951953 733 dbSNP
rs1012884347 736 dbSNP
rs1204419149 747 dbSNP
rs904353381 747 dbSNP
rs1413516510 754 dbSNP
rs1420750851 755 dbSNP
rs1306294825 757 dbSNP
rs1160654697 758 dbSNP
rs1265343561 758 dbSNP
rs1041944188 763 dbSNP
rs1358907197 764 dbSNP
rs202024170 766 dbSNP
rs568335371 767 dbSNP
rs893150539 768 dbSNP
rs1322327481 770 dbSNP
rs548552741 777 dbSNP
rs1381743028 778 dbSNP
rs992484727 781 dbSNP
rs1287666831 783 dbSNP
rs186316962 784 dbSNP
rs1351081411 787 dbSNP
rs903336389 789 dbSNP
rs936973852 790 dbSNP
rs1373400677 793 dbSNP
rs115852835 797 dbSNP
rs1243118598 798 dbSNP
rs530337779 804 dbSNP
rs1408210801 809 dbSNP
rs1378641158 815 dbSNP
rs1176811025 820 dbSNP
rs1173450139 824 dbSNP
rs181602746 833 dbSNP
rs943007585 836 dbSNP
rs963666433 841 dbSNP
rs908893456 847 dbSNP
rs1174512821 858 dbSNP
rs907998241 859 dbSNP
rs1421161675 862 dbSNP
rs1447184443 862 dbSNP
rs1251279971 868 dbSNP
rs191502630 874 dbSNP
rs780224981 884 dbSNP
rs1030812515 885 dbSNP
rs996243230 886 dbSNP
rs1245527210 895 dbSNP
rs1198267963 896 dbSNP
rs1473033325 897 dbSNP
rs1458619290 898 dbSNP
rs1026560257 900 dbSNP
rs981338711 906 dbSNP
rs1418923649 908 dbSNP
rs1261712252 909 dbSNP
rs1240678014 914 dbSNP
rs971222660 922 dbSNP
rs1023022442 924 dbSNP
rs1317175373 929 dbSNP
rs531242113 932 dbSNP
rs1333360651 947 dbSNP
rs1394046694 949 dbSNP
rs1221585793 960 dbSNP
rs1390650869 960 dbSNP
rs561496110 963 dbSNP
rs893119319 968 dbSNP
rs1230366616 980 dbSNP
rs1282098071 981 dbSNP
rs1318086442 984 dbSNP
rs1220994918 989 dbSNP
rs1384430172 989 dbSNP
rs187121967 989 dbSNP
rs1337304568 992 dbSNP
rs964672435 999 dbSNP
rs1032341153 1000 dbSNP
rs1210845292 1001 dbSNP
rs999505526 1007 dbSNP
rs769973827 1008 dbSNP
rs1450096221 1016 dbSNP
rs1198699104 1019 dbSNP
rs1263992556 1021 dbSNP
rs1455509697 1021 dbSNP
rs1478876770 1029 dbSNP
rs1172700029 1033 dbSNP
rs1371303588 1034 dbSNP
rs143132061 1035 dbSNP
rs1158407169 1048 dbSNP
rs1417387501 1049 dbSNP
rs904445944 1052 dbSNP
rs1184727101 1055 dbSNP
rs1402718152 1055 dbSNP
rs1041522638 1080 dbSNP
rs1010502799 1086 dbSNP
rs1340576419 1093 dbSNP
rs895674981 1100 dbSNP
rs541624609 1109 dbSNP
rs900021495 1110 dbSNP
rs1241641919 1111 dbSNP
rs1307451447 1115 dbSNP
rs76302509 1120 dbSNP
rs943143548 1121 dbSNP
rs1354764578 1133 dbSNP
rs572937234 1137 dbSNP
rs1259766561 1139 dbSNP
rs575791877 1142 dbSNP
rs556003134 1143 dbSNP
rs1360935025 1147 dbSNP
rs1427856190 1147 dbSNP
rs879224611 1147 dbSNP
rs1188245968 1150 dbSNP
rs1315203299 1157 dbSNP
rs142125087 1162 dbSNP
rs919143278 1163 dbSNP
rs1380538476 1164 dbSNP
rs1420937261 1176 dbSNP
rs1286629071 1178 dbSNP
rs1361788103 1178 dbSNP
rs760515069 1181 dbSNP
rs775208288 1187 dbSNP
rs1315500851 1190 dbSNP
rs1381004290 1190 dbSNP
rs1245751630 1199 dbSNP
rs1382584492 1200 dbSNP
rs1384049016 1202 dbSNP
rs573216716 1206 dbSNP
rs1288506726 1213 dbSNP
rs1418146303 1214 dbSNP
rs1367473391 1220 dbSNP
rs1214468426 1225 dbSNP
rs1260217611 1225 dbSNP
rs1037376355 1229 dbSNP
rs772112758 1237 dbSNP
rs201902551 1239 dbSNP
rs1442508139 1242 dbSNP
rs942227725 1247 dbSNP
rs1444489879 1248 dbSNP
rs1182784995 1249 dbSNP
rs908134989 1251 dbSNP
rs1367248995 1264 dbSNP
rs1156571365 1277 dbSNP
rs983742744 1281 dbSNP
rs1344075559 1282 dbSNP
rs552523620 1284 dbSNP
rs878898951 1286 dbSNP
rs1305077711 1293 dbSNP
rs955029055 1298 dbSNP
rs1404574363 1299 dbSNP
rs1179612407 1306 dbSNP
rs1429473540 1309 dbSNP
rs923495570 1311 dbSNP
rs1261518541 1313 dbSNP
rs1452310325 1317 dbSNP
rs539050308 1323 dbSNP
rs964767607 1329 dbSNP
rs570487086 1336 dbSNP
rs1490745693 1343 dbSNP
rs1033423869 1351 dbSNP
rs998826089 1352 dbSNP
rs967788952 1360 dbSNP
rs556820890 1364 dbSNP
rs1357117954 1370 dbSNP
rs1206759368 1376 dbSNP
rs1032270141 1378 dbSNP
rs757772461 1379 dbSNP
rs1029884253 1392 dbSNP
rs998409751 1404 dbSNP
rs1000833755 1405 dbSNP
rs1175092797 1414 dbSNP
rs181655777 1418 dbSNP
rs1433222896 1419 dbSNP
rs1177632354 1421 dbSNP
rs1020604567 1424 dbSNP
rs755546759 1436 dbSNP
rs887575842 1442 dbSNP
rs1332699473 1446 dbSNP
rs1402883314 1456 dbSNP
rs1049291031 1457 dbSNP
rs568193421 1458 dbSNP
rs1057028888 1459 dbSNP
rs1297783031 1461 dbSNP
rs766100368 1464 dbSNP
rs1001247914 1467 dbSNP
rs1281465642 1468 dbSNP
rs1323011367 1471 dbSNP
rs1222806568 1480 dbSNP
rs1258682783 1482 dbSNP
rs548490333 1484 dbSNP
rs1202220738 1487 dbSNP
rs1424078251 1494 dbSNP
rs1488610247 1498 dbSNP
rs545787783 1499 dbSNP
rs1266137332 1506 dbSNP
rs1171974914 1507 dbSNP
rs1479853055 1507 dbSNP
rs1170113915 1513 dbSNP
rs1037344546 1519 dbSNP
rs915738907 1521 dbSNP
rs1350620705 1522 dbSNP
rs941710879 1522 dbSNP
rs991359347 1524 dbSNP
rs1372819809 1528 dbSNP
rs907561861 1532 dbSNP
rs112522244 1535 dbSNP
rs1344937836 1535 dbSNP
rs752063715 1535 dbSNP
rs771684830 1535 dbSNP
rs1481177903 1536 dbSNP
rs78145147 1537 dbSNP
rs77942906 1538 dbSNP
rs1212529277 1543 dbSNP
rs1011737544 1546 dbSNP
rs1289197440 1546 dbSNP
rs1322173484 1546 dbSNP
rs1490032491 1546 dbSNP
rs779316763 1546 dbSNP
rs957433580 1546 dbSNP
rs369681930 1547 dbSNP
rs926024724 1547 dbSNP
rs1491541196 1548 dbSNP
rs1198313351 1549 dbSNP
rs1414962526 1549 dbSNP
rs1407483595 1550 dbSNP
rs566004539 1551 dbSNP
rs1365218037 1552 dbSNP
rs546972749 1553 dbSNP
rs1300132307 1554 dbSNP
rs1328059099 1555 dbSNP
rs1216621498 1560 dbSNP
rs1228219847 1560 dbSNP
rs1247938785 1560 dbSNP
rs1285744101 1560 dbSNP
rs368306125 1560 dbSNP
rs752352570 1560 dbSNP
rs967379552 1560 dbSNP
rs1252099780 1561 dbSNP
rs533209284 1563 dbSNP
rs1338700910 1565 dbSNP
rs1440555463 1569 dbSNP
rs1029639510 1570 dbSNP
rs1382861667 1570 dbSNP
rs1400236237 1571 dbSNP
rs1225129922 1572 dbSNP
rs1359694905 1576 dbSNP
rs878968581 1577 dbSNP
rs1334454183 1578 dbSNP
rs1381857387 1579 dbSNP
rs1240408838 1581 dbSNP
rs879242811 1583 dbSNP
rs201332359 1587 dbSNP
rs1347879264 1589 dbSNP
rs998377380 1596 dbSNP
rs1404606907 1611 dbSNP
rs112298141 1615 dbSNP
rs1463060030 1616 dbSNP
rs564599318 1616 dbSNP
rs1242913723 1618 dbSNP
rs34598343 1620 dbSNP
rs766879904 1620 dbSNP
rs1184214479 1622 dbSNP
rs1048438088 1628 dbSNP
rs933625239 1629 dbSNP
rs1362314737 1631 dbSNP
rs964298854 1634 dbSNP
rs1330999724 1637 dbSNP
rs923399778 1640 dbSNP
rs1429835519 1643 dbSNP
rs1018398443 1644 dbSNP
rs753574217 1653 dbSNP
rs1405058653 1674 dbSNP
rs1447293750 1681 dbSNP
rs556854065 1681 dbSNP
rs1333638876 1685 dbSNP
rs544406115 1696 dbSNP
rs764661248 1711 dbSNP
rs189349131 1713 dbSNP
rs1396422300 1720 dbSNP
rs1168913582 1725 dbSNP
rs1222206106 1725 dbSNP
rs1263114462 1737 dbSNP
rs943428098 1742 dbSNP
rs1318991806 1747 dbSNP
rs1197953156 1751 dbSNP
rs1430519561 1752 dbSNP
rs888621756 1755 dbSNP
rs1048776035 1771 dbSNP
rs1479527291 1776 dbSNP
rs1174146666 1778 dbSNP
rs1983070 1785 dbSNP
rs897472012 1794 dbSNP
rs979508829 1795 dbSNP
rs184919150 1799 dbSNP
rs1020989652 1800 dbSNP
rs1303438912 1802 dbSNP
rs1055728247 1803 dbSNP
rs989131834 1804 dbSNP
rs959987597 1808 dbSNP
rs1437098614 1810 dbSNP
rs925795739 1816 dbSNP
rs977512649 1818 dbSNP
rs1035490375 1823 dbSNP
rs1339208106 1828 dbSNP
rs1210640458 1831 dbSNP
rs1294276287 1837 dbSNP
rs1001385253 1842 dbSNP
rs967893643 1843 dbSNP
rs1205557236 1845 dbSNP
rs922600466 1847 dbSNP
rs1262327497 1861 dbSNP
rs976763528 1861 dbSNP
rs1223080658 1867 dbSNP
rs1195324718 1868 dbSNP
rs1343178751 1876 dbSNP
rs1281290029 1878 dbSNP
rs764847970 1879 dbSNP
rs1474987834 1881 dbSNP
rs964018003 1881 dbSNP
rs1018449408 1883 dbSNP
rs1335309481 1884 dbSNP
rs1422155046 1893 dbSNP
rs1301994473 1894 dbSNP
rs1329908304 1897 dbSNP
rs1294122903 1900 dbSNP
rs1326184169 1900 dbSNP
rs1246029376 1902 dbSNP
rs1317359921 1904 dbSNP
rs1357566688 1909 dbSNP
rs1221752199 1910 dbSNP
rs1016007136 1919 dbSNP
rs1486922230 1921 dbSNP
rs984793283 1922 dbSNP
rs1427652286 1929 dbSNP
rs1183984312 1930 dbSNP
rs1006002414 1936 dbSNP
rs573154155 1938 dbSNP
rs1442391815 1942 dbSNP
rs1162603380 1943 dbSNP
rs1363854856 1944 dbSNP
rs1455095476 1947 dbSNP
rs1407275836 1951 dbSNP
rs886099789 1955 dbSNP
rs1453756937 1969 dbSNP
rs1026256361 1970 dbSNP
rs1381125438 1971 dbSNP
rs1245501655 1973 dbSNP
rs1336513394 1974 dbSNP
rs1237011429 1979 dbSNP
rs1412332639 1979 dbSNP
rs1258833451 1984 dbSNP
rs1485505466 1990 dbSNP
rs1047391856 1991 dbSNP
rs1409720992 1991 dbSNP
rs1459854233 1992 dbSNP
rs1182565830 2003 dbSNP
rs1250840648 2005 dbSNP
rs553261978 2008 dbSNP
rs1420306473 2011 dbSNP
rs1469174689 2012 dbSNP
rs1363656517 2013 dbSNP
rs897616871 2013 dbSNP
rs993248348 2013 dbSNP
rs1452419506 2015 dbSNP
rs1298920222 2016 dbSNP
rs1375816744 2018 dbSNP
rs1389678844 2018 dbSNP
rs1024063634 2023 dbSNP
rs1185323462 2027 dbSNP
rs1013893159 2028 dbSNP
rs1055695260 2028 dbSNP
rs1321106043 2028 dbSNP
rs74807413 2028 dbSNP
rs753775308 2028 dbSNP
rs894159466 2028 dbSNP
rs1445187780 2029 dbSNP
rs1242260076 2030 dbSNP
rs1207765613 2031 dbSNP
rs1440851839 2032 dbSNP
rs935939177 2033 dbSNP
rs912203071 2038 dbSNP
rs1356711510 2039 dbSNP
rs904340429 2047 dbSNP
rs1297871264 2050 dbSNP
rs1346199794 2058 dbSNP
rs1406880701 2064 dbSNP
rs1285067096 2075 dbSNP
rs1343585280 2083 dbSNP
rs933534293 2085 dbSNP
rs1218354030 2086 dbSNP
rs1273435703 2089 dbSNP
rs1309096524 2093 dbSNP
rs1201975715 2094 dbSNP
rs902116681 2101 dbSNP
rs1039153803 2102 dbSNP
rs1490358567 2103 dbSNP
rs1224100292 2106 dbSNP
rs943521365 2107 dbSNP
rs922652311 2118 dbSNP
rs976814425 2120 dbSNP
rs1248747201 2122 dbSNP
rs1427152810 2139 dbSNP
rs1169963705 2150 dbSNP
rs1384185890 2153 dbSNP
rs1366455973 2157 dbSNP
rs1426568582 2160 dbSNP
rs754467805 2165 dbSNP
rs925484700 2169 dbSNP
rs1365104525 2172 dbSNP
rs942677463 2181 dbSNP
rs536920544 2186 dbSNP
rs979918918 2188 dbSNP
rs1347380674 2190 dbSNP
rs911240751 2191 dbSNP
rs1296353587 2192 dbSNP
rs1359725812 2194 dbSNP
rs945520589 2198 dbSNP
rs984371156 2199 dbSNP
rs1288943528 2200 dbSNP
rs1318533009 2201 dbSNP
rs753283295 2202 dbSNP
rs1217094031 2209 dbSNP
rs766320721 2217 dbSNP
rs992182161 2225 dbSNP
rs960202497 2230 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ugAAA--GGUC---CUA-AGUAAUUGa 5'
            |||  | ||    ||  ||||||| 
Target 5' acUUUGGCAAGAAAAAUAACAUUAACc 3'
2 - 28
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_018133 | 3UTR | AUGCAACUGAUUUAUACAAAAUGAACUUUGGCAAGAAAAAUAACAUUAACCUCAUUGUUUAUGGCCAUGCUUUGUGCAUAAUCAAAGUUUAUGAUUAAAUGUAAGGAAGUGGUAUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000309993.2 | 3UTR | AACUUUGGCAAGAAAAAUAACAUUAACCUCAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28260 Renal cortex and medulla 0.461 5.6e-2 0.363 1.1e-1 13 Click to see details
GSE14794 Lymphoblastoid cells -0.143 8.9e-2 -0.105 1.6e-1 90 Click to see details
GSE17306 Multiple myeloma 0.17 1.2e-1 0.513 8.2e-5 49 Click to see details
GSE21849 B cell lymphoma 0.213 1.3e-1 0.224 1.2e-1 29 Click to see details
GSE32688 Pancreatic cancer 0.093 3.1e-1 0.147 2.1e-1 32 Click to see details
GSE27834 Pluripotent stem cells 0.118 3.3e-1 -0.085 3.8e-1 16 Click to see details
GSE26953 Aortic valvular endothelial cells -0.088 3.4e-1 -0.171 2.1e-1 24 Click to see details
GSE21687 Ependynoma primary tumors -0.045 3.6e-1 -0.006 4.8e-1 64 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.059 3.9e-1 0.189 1.8e-1 25 Click to see details
GSE28544 Breast cancer 0.03 4.4e-1 0.128 2.8e-1 24 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.03 4.5e-1 -0.281 1.2e-1 20 Click to see details
GSE38226 Liver fibrosis -0.013 4.8e-1 0.049 4.2e-1 21 Click to see details
GSE42095 Differentiated embryonic stem cells 0.001 5.0e-1 -0.133 2.7e-1 23 Click to see details
GSE42095 Differentiated embryonic stem cells 0.001 5.0e-1 -0.133 2.7e-1 23 Click to see details
GSE42095 Differentiated embryonic stem cells 0.001 5.0e-1 -0.133 2.7e-1 23 Click to see details
GSE42095 Differentiated embryonic stem cells 0.001 5.0e-1 -0.133 2.7e-1 23 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
58 hsa-miR-569 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT004827 SPI1 Spi-1 proto-oncogene 2 1
MIRT086537 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT086545 MOB4 MOB family member 4, phocein 2 2
MIRT154349 PARD6B par-6 family cell polarity regulator beta 2 4
MIRT182174 POU2F1 POU class 2 homeobox 1 2 2
MIRT190452 EIF5 eukaryotic translation initiation factor 5 2 2
MIRT191410 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT199846 CSNK1G2 casein kinase 1 gamma 2 2 2
MIRT208376 SLC25A36 solute carrier family 25 member 36 2 2
MIRT275677 CARKD NAD(P)HX dehydratase 2 2
MIRT275764 TFDP1 transcription factor Dp-1 2 2
MIRT280470 UBR7 ubiquitin protein ligase E3 component n-recognin 7 (putative) 2 2
MIRT296592 FAM217B family with sequence similarity 217 member B 2 4
MIRT306847 FYTTD1 forty-two-three domain containing 1 2 2
MIRT443764 HLF HLF, PAR bZIP transcription factor 2 2
MIRT448026 GSR glutathione-disulfide reductase 2 2
MIRT448659 NCALD neurocalcin delta 2 2
MIRT449142 UQCRB ubiquinol-cytochrome c reductase binding protein 2 2
MIRT449225 RAD51B RAD51 paralog B 2 2
MIRT462421 TWISTNB TWIST neighbor 2 2
MIRT468478 SESN3 sestrin 3 2 4
MIRT478170 DENND5B DENN domain containing 5B 2 2
MIRT478577 VSIG2 V-set and immunoglobulin domain containing 2 2 2
MIRT481300 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) 2 16
MIRT485894 ZFP36 ZFP36 ring finger protein 2 2
MIRT497242 FITM2 fat storage inducing transmembrane protein 2 2 2
MIRT500282 ZNF703 zinc finger protein 703 2 8
MIRT509536 RSBN1L round spermatid basic protein 1 like 2 4
MIRT511835 GPATCH8 G-patch domain containing 8 2 4
MIRT522437 MON1B MON1 homolog B, secretory trafficking associated 2 2
MIRT523538 GLO1 glyoxalase I 2 4
MIRT527631 MYBPC1 myosin binding protein C, slow type 2 4
MIRT528059 OLAH oleoyl-ACP hydrolase 2 2
MIRT532549 TXNL1 thioredoxin like 1 2 2
MIRT545503 NAP1L1 nucleosome assembly protein 1 like 1 2 2
MIRT546724 RNF6 ring finger protein 6 2 2
MIRT546737 RNF141 ring finger protein 141 2 2
MIRT550889 ACTA1 actin, alpha 1, skeletal muscle 2 2
MIRT554180 SLC35E2B solute carrier family 35 member E2B 2 2
MIRT555878 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 2
MIRT558458 DCUN1D1 defective in cullin neddylation 1 domain containing 1 2 2
MIRT560375 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT562672 AKT3 AKT serine/threonine kinase 3 2 2
MIRT563810 TUBA1B tubulin alpha 1b 2 2
MIRT564607 ZNF711 zinc finger protein 711 2 2
MIRT564881 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 2
MIRT566724 MSL2 MSL complex subunit 2 2 2
MIRT566900 CSRP3 cysteine and glycine rich protein 3 2 2
MIRT570002 COL1A2 collagen type I alpha 2 chain 2 2
MIRT612300 ZFP14 ZFP14 zinc finger protein 2 2
MIRT618334 ZNF813 zinc finger protein 813 2 2
MIRT627658 RSBN1 round spermatid basic protein 1 2 2
MIRT630660 PLAG1 PLAG1 zinc finger 2 2
MIRT640802 MYCL1 MYCL proto-oncogene, bHLH transcription factor 1 1
MIRT651370 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT709227 GPSM2 G protein signaling modulator 2 2 2
MIRT712058 ZBTB34 zinc finger and BTB domain containing 34 2 2
MIRT725006 ZPBP zona pellucida binding protein 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-569 Doxorubicin 31703 NSC123127 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-569 Verapamil 2520 NSC272366 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-569 Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line (M14) (50nM)
hsa-miR-569 Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (M14) (50nM)
hsa-mir-569 Fluorouracil 3385 NSC19893 approved sensitive cell line (OE19)
hsa-mir-569 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-569 Tamoxifen 2733525 NSC180973 approved resistant cell line (LCC2)
hsa-miR-569 Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-569 Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-569 Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-569 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-569 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-569 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide/Methotrexate/Gemcitabine resistant cell line (Bats-72)

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