pre-miRNA Information
pre-miRNA hsa-mir-4477a   
Genomic Coordinates chr9: 41233755 - 41233835
Description Homo sapiens miR-4477a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4477a
Sequence 48| CUAUUAAGGACAUUUGUGAUUC |69
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1281813060 1 dbSNP
rs1352899679 1 dbSNP
rs1283566158 2 dbSNP
rs1236244724 4 dbSNP
rs75019967 4 dbSNP
rs1348124293 5 dbSNP
rs34026740 8 dbSNP
rs1288237115 9 dbSNP
rs71262206 10 dbSNP
rs1355759977 11 dbSNP
rs1300249508 16 dbSNP
rs1328879592 18 dbSNP
rs139133717 20 dbSNP
Putative Targets

Gene Information
Gene Symbol HNRNPA2B1   
Synonyms HNRNPA2, HNRNPB1, HNRPA2, HNRPA2B1, HNRPB1, IBMPFD2, RNPA2, SNRPB1
Description heterogeneous nuclear ribonucleoprotein A2/B1
Transcript NM_002137   
Other Transcripts NM_031243   
Expression
Putative miRNA Targets on HNRNPA2B1
3'UTR of HNRNPA2B1
(miRNA target sites are highlighted)
>HNRNPA2B1|NM_002137|3'UTR
   1 GCTTCTTCCTATTTGCCATGGGCTTCACTGTATAAATAGGAGAGGATGAGAGCCCAGAGGTAACAGAACAGCTTCAGGTT
  81 ATCGAAATAACAATGTTAAGGAAACTCTTATCTCAGTCATGCATAAATATGCAGTGATATGGCAGAAGACACCAGAGCAG
 161 ATGCAGAGAGCCATTTTGTGAATGGATTGGATTATTTAATAACATTACCTTACTGTGGAGGAAGGATTGTAAAAAAAAAT
 241 GCCTTTGAGACAGTTTCTTAGCTTTTTAATTGTTGTTTCTTTCTAGTGGTCTTTGTAAGAGTGTAGAAGCATTCCTTCTT
 321 TGATAATGTTAAATTTGTAAGTTTCAGGTGACATGTGAAACCTTTTTTAAGATTTTTCTCAAAGTTTTGAAAAGCTATTA
 401 GCCAGGATCATGGTGTAATAAGACATAACGTTTTTCCTTTAAAAAAATTTAAGTGCGTGTGTAGAGTTAAGAAGCTGTTG
 481 TACATTTATGATTTAATAAAATAATTCTAAAGGAAATTGTGTAATTATAGACTTTTTATTTTAAATAAGTTAAGGAGTGG
 561 GTAGTATAATTAAGGTCCGTTGCAAAGCTGTTGTTATATTTGTATAAGATAAATGCTGGTCAGATGTAAGTGTGTTGTCT
 641 GCAATTCATCAGGATTAAATTATGTAGATAACTTAAGGGATATCTCTGCAAGGAGAAACACCTTTTTAGATCTTTTAGAT
 721 GCTGCTTCTTCAATGCAAGGAAAGGAAATAACCCCAGCGAGGTACTCTTCAGGGACACAGGTCTAGTACAAGAGAACTCT
 801 TGACGGCTACTAAGTTCAGCCAGTCTTAAAAAACTGTGCTGTTTCTACAAAACTTTAACTACAGTAGTTTATAAGGATGC
 881 CAACGAAAGCTGAGGGTGTAGAGCAAAATAGTTCTAAGCTTCAGTTAAACTTCTTTAGGTAAGATCTTATTTACTTTTCC
 961 TTTCTTAATTTTCCTCCCTAAAAGATAAACTAATACTCTTAAATGGTCTTTCAGTATAGTGGTTCTTACGTAGTTTAACA
1041 TAGCTATAAATTGAGTTTAACAATTTATAAACTCAAGAGAATAATTTTTATAAACCCTGTTTTCCAATCTGTCATTTACT
1121 TAAATTATTTTGGTTGTTTTTCCCTTTTTTTCCTTCTTTTCCCACCCCCTCCCCCTCCATGTGAAGATTTGGGTGCTTAA
1201 CATATCATTTTTTTCCCTGCCGGAATTTTAGCATTGATATGAACCATGGACAAGTATATTCTGCTGCCACAAAGACTGTA
1281 AAGTGCTTCATTTCAACAGCTGAGGCAAGCCAAGTGATCATTAATAAAGCTTTTCTTGGTTCCTTCAGTGGTGTTGGTAG
1361 TAAAATGGTAGGTAAAAGTTAGGCTGCAAGTTCAATAAATCATGAGATTTCCCATCGTTACACCCTTGTGTATTCACATT
1441 TCTTGGATCAAACATTTTGAGTGAACTAGGGGTTTTTATTAAAGACATTTGTTGTATTTATGGTTGTAACTGTACATGCT
1521 TATCAGGATGAGACTGAAAGAAGGTAGGGCAAAAATGGTTGAATCTATTTTCAGATAGTAGTTCATACTTGAGTGAAGTG
1601 TCTTGTCTGCATTATGAAGCCTGGTATGTATCCAGTACTAAATAGGTGGGTTAAATGTGGTAATTCTAGTTCAGTGTCTT
1681 ACCCTGAAGAGAAAGTTGTAGGTTGGCTGTTGAAATTCATTCCTTAGATATGATCAGTTTGATTGCCCGGCTTTATTGCC
1761 TTTACAGGAATGTGATACTCAGGGCTTACTCTATACACCAATGAGTCTTCTTTGATCCTAAGACCACCACTGAAGTTGTT
1841 TAGGTTCTTTTGGACAAACATGATAAACTTCTTCAGATACTTTTTTTTTCCTTTGGCAGGAAGGTGTCTTGCTGCAGGTA
1921 ACTAATGAAGAAGTGGTCAACCACAGAGTCTTCAAGAAATAAGAAATTCTGTACCATCTGAAAGTAGTTCTTGTTGGTGC
2001 CTTCATTTAAAAAGCACTCTTTAAAATAAAAGGGAAATGTTTTCTGATAAAACAAACATTTAGTTGAGGTTCTTGATATA
2081 AAACAATTACAAAATGAGTGTTGTTTGTAAAACAGTAACATCAAATTGGCTAGAGAGATAAATGTATCATGTTTTAAATT
2161 AGGTTTTGTGAGTAGACAGATTACAATTCTATTTTAAATATAAAGTTTATAAAATAAATACTTTTTGTATCCAAATACTT
2241 GGTGTAATGTTTACACATAAAATGTGTGAATCTTGTTCTATAAATATTTGGTTGTCTAAAAGATCACCATCCCCTAAATT
2321 TTTAAAAGCAGTTTCACAAAGCTATGCATATTTTAATATTAACAGGTAAATGAGAAGAGCATTGTGGACATTATTGGCTG
2401 TCCCCAATAAAATGCTGTTCATTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cuuAGUGUUUACAGGAAUUAUc 5'
             | :: :| ||:|||:||| 
Target 5' attTAGTTGAGGTTCTTGATAt 3'
2058 - 2079 139.00 -7.90
2
miRNA  3' cuuaguGUUUAC-AGGAAUUAUc 5'
                |||:|| || |||||| 
Target 5' gcaagcCAAGTGATCATTAATAa 3'
1305 - 1327 136.00 -7.70
3
miRNA  3' cuuaGUGUUUACAGGAAUUAUc 5'
              ||:  |||  :|||||| 
Target 5' tgtaCATTTATG-ATTTAATAa 3'
479 - 499 133.00 -6.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN24396006 26 COSMIC
COSN20061525 35 COSMIC
COSN28870584 145 COSMIC
COSN32050070 145 COSMIC
COSN508658 182 COSMIC
COSN24302256 193 COSMIC
COSN19444660 239 COSMIC
COSN31566653 239 COSMIC
COSN5099553 261 COSMIC
COSN19444659 262 COSMIC
COSN19444658 293 COSMIC
COSN9983798 296 COSMIC
COSN31530353 314 COSMIC
COSN27590210 387 COSMIC
COSN28686221 578 COSMIC
COSN8406827 586 COSMIC
COSN20838752 597 COSMIC
COSN14660517 646 COSMIC
COSN29989203 647 COSMIC
COSN31608922 663 COSMIC
COSN17189006 915 COSMIC
COSN29552640 1142 COSMIC
COSN22205014 1265 COSMIC
COSN15754558 1409 COSMIC
COSN22180371 1450 COSMIC
COSN16128253 1458 COSMIC
COSN30543582 1462 COSMIC
COSN31569757 1483 COSMIC
COSN29039187 1558 COSMIC
COSN31537226 1605 COSMIC
COSN21669754 1644 COSMIC
COSN24014574 1668 COSMIC
COSN21582973 1930 COSMIC
COSN30446385 2037 COSMIC
COSN31660849 2094 COSMIC
COSN31541420 2150 COSMIC
COSN6876875 2158 COSMIC
COSN31536034 2230 COSMIC
COSN4932964 2231 COSMIC
COSN28300322 2255 COSMIC
COSN31489862 2297 COSMIC
COSN2217427 2314 COSMIC
COSN4868798 2324 COSMIC
COSN31553521 2478 COSMIC
COSN8406826 2499 COSMIC
COSN32200471 2528 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1466814485 2 dbSNP
rs902886039 3 dbSNP
rs200301894 4 dbSNP
rs760843236 5 dbSNP
rs760764771 8 dbSNP
rs780061421 8 dbSNP
rs750906630 9 dbSNP
rs756219376 9 dbSNP
rs772119326 9 dbSNP
rs1478648972 10 dbSNP
rs917261057 10 dbSNP
rs748712123 11 dbSNP
rs1192479818 13 dbSNP
rs768069321 15 dbSNP
rs150895465 16 dbSNP
rs1239147009 17 dbSNP
rs779388965 18 dbSNP
rs112918759 22 dbSNP
rs539255107 29 dbSNP
rs1456705763 30 dbSNP
rs368287762 34 dbSNP
rs756818963 35 dbSNP
rs751190025 36 dbSNP
rs910139787 37 dbSNP
rs1276616644 39 dbSNP
rs375284812 41 dbSNP
rs775655448 44 dbSNP
rs757964758 45 dbSNP
rs752744674 46 dbSNP
rs1168544278 48 dbSNP
rs1026712298 49 dbSNP
rs954208863 51 dbSNP
rs1330555116 53 dbSNP
rs1333081773 55 dbSNP
rs1028484804 56 dbSNP
rs1301530516 56 dbSNP
rs993518585 59 dbSNP
rs1223126039 61 dbSNP
rs1230610410 65 dbSNP
rs1471987323 66 dbSNP
rs1406934694 67 dbSNP
rs1366414892 69 dbSNP
rs376066830 70 dbSNP
rs1474085185 73 dbSNP
rs183941705 76 dbSNP
rs1162484535 78 dbSNP
rs1016183416 87 dbSNP
rs772184758 88 dbSNP
rs1327104602 90 dbSNP
rs1369961549 91 dbSNP
rs1410536391 94 dbSNP
rs1410871395 97 dbSNP
rs1310343632 102 dbSNP
rs1045485044 103 dbSNP
rs76429846 105 dbSNP
rs1285228220 109 dbSNP
rs1358916756 114 dbSNP
rs1470199601 117 dbSNP
rs568358609 122 dbSNP
rs1229621441 128 dbSNP
rs1270477722 135 dbSNP
rs555168454 136 dbSNP
rs893432583 137 dbSNP
rs2853809 143 dbSNP
rs1196628990 144 dbSNP
rs1032239020 145 dbSNP
rs1186570274 154 dbSNP
rs1002048228 155 dbSNP
rs879817983 155 dbSNP
rs1166316546 156 dbSNP
rs1269114573 156 dbSNP
rs2853810 157 dbSNP
rs1214866370 158 dbSNP
rs1389814136 161 dbSNP
rs1314861113 162 dbSNP
rs1286295460 163 dbSNP
rs1046210165 166 dbSNP
rs1170632356 167 dbSNP
rs879059343 172 dbSNP
rs878941294 173 dbSNP
rs112332539 175 dbSNP
rs111456264 176 dbSNP
rs950213832 180 dbSNP
rs1344417908 192 dbSNP
rs1281520693 193 dbSNP
rs1395891685 196 dbSNP
rs745947242 203 dbSNP
rs1335466752 212 dbSNP
rs1342588325 218 dbSNP
rs1046257581 230 dbSNP
rs548602926 240 dbSNP
rs895910368 243 dbSNP
rs1346435558 249 dbSNP
rs1297800925 251 dbSNP
rs1294907430 262 dbSNP
rs778830338 263 dbSNP
rs1228477552 266 dbSNP
rs1276235334 273 dbSNP
rs1052496869 276 dbSNP
rs1037484352 286 dbSNP
rs936332762 293 dbSNP
rs1190805872 296 dbSNP
rs1247630801 296 dbSNP
rs1443886042 296 dbSNP
rs1450401378 297 dbSNP
rs903568399 298 dbSNP
rs1170724077 300 dbSNP
rs1393289026 307 dbSNP
rs1043269882 309 dbSNP
rs1347247046 319 dbSNP
rs1173633133 328 dbSNP
rs528739085 329 dbSNP
rs9806 340 dbSNP
rs566365325 350 dbSNP
rs1319567004 351 dbSNP
rs1414457535 353 dbSNP
rs1405033227 355 dbSNP
rs940022639 357 dbSNP
rs1320371500 359 dbSNP
rs1364004679 360 dbSNP
rs1435280547 361 dbSNP
rs1299377223 364 dbSNP
rs1427806761 365 dbSNP
rs909857549 369 dbSNP
rs1173683194 370 dbSNP
rs1231923401 374 dbSNP
rs1256480515 377 dbSNP
rs1481118561 378 dbSNP
rs1347114705 382 dbSNP
rs1206589888 385 dbSNP
rs552776580 387 dbSNP
rs1190703577 389 dbSNP
rs1251408223 391 dbSNP
rs1432637273 391 dbSNP
rs1199734432 396 dbSNP
rs201198080 396 dbSNP
rs921473143 396 dbSNP
rs532769130 401 dbSNP
rs774494885 403 dbSNP
rs1159077748 407 dbSNP
rs1389768057 414 dbSNP
rs965893675 421 dbSNP
rs192474836 423 dbSNP
rs943650706 424 dbSNP
rs1322088952 428 dbSNP
rs1388177240 431 dbSNP
rs910681342 433 dbSNP
rs764165455 434 dbSNP
rs11557708 435 dbSNP
rs1484773735 440 dbSNP
rs1287676437 441 dbSNP
rs988270725 444 dbSNP
rs749133495 447 dbSNP
rs777393637 450 dbSNP
rs1263882769 458 dbSNP
rs763262209 460 dbSNP
rs1243573822 462 dbSNP
rs540110113 463 dbSNP
rs1460868806 467 dbSNP
rs1269466249 476 dbSNP
rs957713873 477 dbSNP
rs919359670 478 dbSNP
rs1182025592 484 dbSNP
rs1413379125 487 dbSNP
rs1205707591 488 dbSNP
rs1031954887 504 dbSNP
rs1002099114 511 dbSNP
rs550675037 517 dbSNP
rs1163281872 518 dbSNP
rs905114702 521 dbSNP
rs755907259 524 dbSNP
rs1013423622 525 dbSNP
rs1212964888 525 dbSNP
rs1293768958 525 dbSNP
rs141587177 527 dbSNP
rs1364328317 530 dbSNP
rs9807 531 dbSNP
rs11557711 534 dbSNP
rs1351085588 536 dbSNP
rs541820828 537 dbSNP
rs1310394943 540 dbSNP
rs573010137 543 dbSNP
rs1271204859 544 dbSNP
rs980671762 546 dbSNP
rs1482090344 551 dbSNP
rs780978393 553 dbSNP
rs754602361 555 dbSNP
rs559247073 558 dbSNP
rs969308297 562 dbSNP
rs1180631641 567 dbSNP
rs1424785423 573 dbSNP
rs1164990754 584 dbSNP
rs1404595548 585 dbSNP
rs751045955 586 dbSNP
rs1427235826 587 dbSNP
rs1167481014 593 dbSNP
rs189172379 594 dbSNP
rs1411509612 596 dbSNP
rs1048425712 597 dbSNP
rs1013423389 598 dbSNP
rs1378110361 603 dbSNP
rs1315066633 604 dbSNP
rs932921618 604 dbSNP
rs570123212 605 dbSNP
rs1030747447 606 dbSNP
rs1041652119 607 dbSNP
rs1421202652 610 dbSNP
rs1049851 612 dbSNP
rs1208584824 613 dbSNP
rs866184159 614 dbSNP
rs1186929934 617 dbSNP
rs868070398 627 dbSNP
rs1483766076 630 dbSNP
rs369559841 631 dbSNP
rs769755119 639 dbSNP
rs1244585408 643 dbSNP
rs914028198 646 dbSNP
rs1187543742 648 dbSNP
rs1390191410 674 dbSNP
rs1411174828 676 dbSNP
rs1173817973 678 dbSNP
rs1000593306 681 dbSNP
rs903514582 682 dbSNP
rs762175637 684 dbSNP
rs1466337464 685 dbSNP
rs943598328 691 dbSNP
rs987879129 693 dbSNP
rs1461833633 697 dbSNP
rs957764082 700 dbSNP
rs1298640116 702 dbSNP
rs1367398801 702 dbSNP
rs1217588653 705 dbSNP
rs1278511455 707 dbSNP
rs183940343 708 dbSNP
rs1266556161 711 dbSNP
rs1477801638 711 dbSNP
rs980413523 729 dbSNP
rs1207656654 730 dbSNP
rs556782403 734 dbSNP
rs1309523372 735 dbSNP
rs1424353820 739 dbSNP
rs778965965 743 dbSNP
rs139197882 747 dbSNP
rs1178519132 749 dbSNP
rs1456540300 752 dbSNP
rs745783245 752 dbSNP
rs1391173341 753 dbSNP
rs550668260 753 dbSNP
rs1434382633 756 dbSNP
rs1274409666 758 dbSNP
rs1368404898 758 dbSNP
rs530482360 758 dbSNP
rs1287025752 760 dbSNP
rs1004340595 763 dbSNP
rs1229439496 765 dbSNP
rs781456058 776 dbSNP
rs554620746 777 dbSNP
rs193027274 782 dbSNP
rs1448426273 783 dbSNP
rs1218735430 784 dbSNP
rs1245553482 785 dbSNP
rs1201453413 788 dbSNP
rs888526009 788 dbSNP
rs942123302 791 dbSNP
rs909185014 792 dbSNP
rs980786325 794 dbSNP
rs969254540 795 dbSNP
rs1024884801 797 dbSNP
rs1460000367 800 dbSNP
rs1350490659 809 dbSNP
rs188388055 819 dbSNP
rs1355969336 824 dbSNP
rs1306682419 826 dbSNP
rs1350469037 828 dbSNP
rs1229377244 830 dbSNP
rs1170653424 833 dbSNP
rs1423808146 835 dbSNP
rs996851356 837 dbSNP
rs1354689924 839 dbSNP
rs899805153 840 dbSNP
rs1288745329 844 dbSNP
rs1185181269 851 dbSNP
rs1445231809 855 dbSNP
rs992523749 858 dbSNP
rs182514356 860 dbSNP
rs1224141434 864 dbSNP
rs956547936 866 dbSNP
rs944273929 871 dbSNP
rs1482727192 878 dbSNP
rs1031279786 879 dbSNP
rs115788913 883 dbSNP
rs1471699946 884 dbSNP
rs1162847610 885 dbSNP
rs539369396 889 dbSNP
rs1414850116 900 dbSNP
rs936458548 905 dbSNP
rs775759977 908 dbSNP
rs903629123 910 dbSNP
rs570261980 926 dbSNP
rs925038022 930 dbSNP
rs980465982 931 dbSNP
rs1339036198 934 dbSNP
rs1481629397 941 dbSNP
rs969094816 943 dbSNP
rs1017854645 947 dbSNP
rs1283219105 948 dbSNP
rs1221939065 950 dbSNP
rs1201065964 958 dbSNP
rs564901099 960 dbSNP
rs1294478127 961 dbSNP
rs111656128 963 dbSNP
rs1340860729 966 dbSNP
rs1247170348 968 dbSNP
rs1316886734 971 dbSNP
rs917560973 986 dbSNP
rs1006518221 987 dbSNP
rs566094791 995 dbSNP
rs890823520 996 dbSNP
rs770994687 997 dbSNP
rs1014795740 1000 dbSNP
rs1186911611 1002 dbSNP
rs1389567769 1003 dbSNP
rs1006065413 1005 dbSNP
rs1052021683 1006 dbSNP
rs1400759171 1008 dbSNP
rs1414252346 1009 dbSNP
rs1308269861 1013 dbSNP
rs1335354924 1013 dbSNP
rs750845438 1018 dbSNP
rs73281542 1019 dbSNP
rs897982047 1020 dbSNP
rs1036547053 1026 dbSNP
rs867594043 1027 dbSNP
rs1165279876 1029 dbSNP
rs1020014943 1032 dbSNP
rs1278981043 1035 dbSNP
rs1425037480 1039 dbSNP
rs1462494260 1042 dbSNP
rs1008518278 1053 dbSNP
rs35442241 1053 dbSNP
rs1247689038 1057 dbSNP
rs892702554 1063 dbSNP
rs551386024 1064 dbSNP
rs1376430413 1075 dbSNP
rs1477950290 1086 dbSNP
rs1052598410 1087 dbSNP
rs942070930 1088 dbSNP
rs1456007139 1092 dbSNP
rs936861145 1095 dbSNP
rs528430593 1099 dbSNP
rs1387514242 1102 dbSNP
rs772219484 1106 dbSNP
rs774368003 1116 dbSNP
rs1044822684 1118 dbSNP
rs1420961482 1119 dbSNP
rs948077800 1120 dbSNP
rs1226401299 1123 dbSNP
rs1267731108 1123 dbSNP
rs1325365552 1123 dbSNP
rs1486356528 1126 dbSNP
rs917934030 1129 dbSNP
rs777363470 1130 dbSNP
rs1451132458 1132 dbSNP
rs947779474 1138 dbSNP
rs1432132061 1141 dbSNP
rs1158966220 1144 dbSNP
rs1471801519 1144 dbSNP
rs1453933134 1148 dbSNP
rs1489940442 1149 dbSNP
rs1290276241 1150 dbSNP
rs992074718 1152 dbSNP
rs917633487 1154 dbSNP
rs992228584 1157 dbSNP
rs146782223 1159 dbSNP
rs190255971 1161 dbSNP
rs940336870 1164 dbSNP
rs1259520205 1166 dbSNP
rs1241724779 1167 dbSNP
rs1407762037 1171 dbSNP
rs1317315988 1172 dbSNP
rs1241395815 1174 dbSNP
rs1263935213 1176 dbSNP
rs907794659 1178 dbSNP
rs1288500324 1182 dbSNP
rs763766330 1185 dbSNP
rs984681477 1185 dbSNP
rs956848180 1186 dbSNP
rs1182089451 1187 dbSNP
rs1252916915 1189 dbSNP
rs1343304206 1192 dbSNP
rs1160789340 1198 dbSNP
rs951870265 1199 dbSNP
rs923751810 1200 dbSNP
rs1456958526 1201 dbSNP
rs1163743435 1202 dbSNP
rs1304527766 1202 dbSNP
rs1028815154 1204 dbSNP
rs1383884724 1206 dbSNP
rs1427682233 1208 dbSNP
rs1307369411 1209 dbSNP
rs1373742876 1211 dbSNP
rs1392963859 1218 dbSNP
rs1310816856 1220 dbSNP
rs979235962 1222 dbSNP
rs967735646 1223 dbSNP
rs1017968521 1224 dbSNP
rs1006637236 1225 dbSNP
rs1246793724 1226 dbSNP
rs1293953921 1229 dbSNP
rs575085976 1233 dbSNP
rs1205014328 1235 dbSNP
rs1252436904 1237 dbSNP
rs1412616487 1238 dbSNP
rs1481804368 1238 dbSNP
rs1180538449 1241 dbSNP
rs1253639968 1242 dbSNP
rs770934802 1242 dbSNP
rs955051505 1243 dbSNP
rs1175847201 1246 dbSNP
rs1479485709 1247 dbSNP
rs747874980 1248 dbSNP
rs1008651849 1249 dbSNP
rs1167852850 1251 dbSNP
rs749225559 1253 dbSNP
rs75112074 1260 dbSNP
rs898091227 1263 dbSNP
rs1401236184 1264 dbSNP
rs1036492892 1269 dbSNP
rs1453574343 1273 dbSNP
rs1006402485 1274 dbSNP
rs1200363122 1275 dbSNP
rs1317456050 1276 dbSNP
rs1001060475 1279 dbSNP
rs1428300239 1279 dbSNP
rs528071802 1282 dbSNP
rs904054790 1288 dbSNP
rs1045209498 1289 dbSNP
rs887984542 1291 dbSNP
rs896234316 1293 dbSNP
rs1462066598 1295 dbSNP
rs1203869591 1296 dbSNP
rs1244641977 1297 dbSNP
rs1045154625 1298 dbSNP
rs1447112513 1298 dbSNP
rs1185485995 1302 dbSNP
rs1420131088 1306 dbSNP
rs1430162082 1309 dbSNP
rs1173880374 1310 dbSNP
rs1428279521 1310 dbSNP
rs558948848 1311 dbSNP
rs1263035209 1312 dbSNP
rs769534583 1313 dbSNP
rs1202506111 1315 dbSNP
rs1434460922 1317 dbSNP
rs545686813 1318 dbSNP
rs1289456081 1319 dbSNP
rs1320745099 1320 dbSNP
rs940366663 1322 dbSNP
rs1301229519 1323 dbSNP
rs1225790621 1325 dbSNP
rs1233446991 1326 dbSNP
rs1264605575 1326 dbSNP
rs1242128601 1327 dbSNP
rs144037257 1330 dbSNP
rs1428563504 1331 dbSNP
rs369896118 1332 dbSNP
rs563101452 1332 dbSNP
rs796635335 1332 dbSNP
rs1345253631 1335 dbSNP
rs917895324 1345 dbSNP
rs1160136755 1346 dbSNP
rs1346999089 1347 dbSNP
rs1434455188 1351 dbSNP
rs1293437606 1353 dbSNP
rs1407138255 1355 dbSNP
rs930528157 1361 dbSNP
rs921800602 1362 dbSNP
rs752424416 1365 dbSNP
rs1056884293 1370 dbSNP
rs1284559476 1371 dbSNP
rs780374465 1377 dbSNP
rs923865907 1378 dbSNP
rs979349024 1384 dbSNP
rs111618262 1386 dbSNP
rs1490474376 1391 dbSNP
rs1201521605 1392 dbSNP
rs967855126 1394 dbSNP
rs911080196 1396 dbSNP
rs780994771 1402 dbSNP
rs1469466856 1403 dbSNP
rs1363898683 1406 dbSNP
rs1468330159 1409 dbSNP
rs1408309787 1412 dbSNP
rs1020136363 1413 dbSNP
rs986875040 1414 dbSNP
rs955315109 1415 dbSNP
rs3210097 1416 dbSNP
rs1173394508 1417 dbSNP
rs3210098 1419 dbSNP
rs956734914 1421 dbSNP
rs3210099 1422 dbSNP
rs1029308593 1429 dbSNP
rs1030943110 1433 dbSNP
rs994241964 1439 dbSNP
rs3210100 1441 dbSNP
rs3210101 1442 dbSNP
rs3210104 1446 dbSNP
rs962255802 1447 dbSNP
rs756529815 1449 dbSNP
rs968265003 1450 dbSNP
rs1429431868 1451 dbSNP
rs1006501283 1452 dbSNP
rs1023857590 1461 dbSNP
rs1224577846 1466 dbSNP
rs1243102283 1467 dbSNP
rs887931982 1475 dbSNP
rs1182209188 1480 dbSNP
rs1272440738 1485 dbSNP
rs1459601349 1491 dbSNP
rs1205032104 1495 dbSNP
rs185008012 1498 dbSNP
rs1012834824 1507 dbSNP
rs1471893049 1509 dbSNP
rs1012308565 1510 dbSNP
rs949799585 1517 dbSNP
rs1167226851 1526 dbSNP
rs1200529073 1534 dbSNP
rs1396474802 1536 dbSNP
rs896626350 1538 dbSNP
rs1331372762 1540 dbSNP
rs896564745 1541 dbSNP
rs574809103 1548 dbSNP
rs1437100999 1560 dbSNP
rs1449955911 1561 dbSNP
rs1313967145 1563 dbSNP
rs1249239209 1567 dbSNP
rs1229370607 1569 dbSNP
rs1365613292 1572 dbSNP
rs1338744990 1573 dbSNP
rs1314302714 1581 dbSNP
rs1274781122 1582 dbSNP
rs1440504961 1583 dbSNP
rs1203221387 1586 dbSNP
rs1056432862 1588 dbSNP
rs1244015887 1588 dbSNP
rs1186819515 1590 dbSNP
rs182284582 1602 dbSNP
rs902559917 1609 dbSNP
rs754618680 1612 dbSNP
rs886127338 1618 dbSNP
rs1048755677 1624 dbSNP
rs930580500 1624 dbSNP
rs1043607763 1627 dbSNP
rs555060593 1628 dbSNP
rs1406441690 1633 dbSNP
rs767946822 1634 dbSNP
rs946666570 1635 dbSNP
rs1325358350 1636 dbSNP
rs751134020 1637 dbSNP
rs1228000615 1640 dbSNP
rs189790171 1641 dbSNP
rs985718078 1643 dbSNP
rs944550920 1652 dbSNP
rs1222721954 1666 dbSNP
rs1263976072 1676 dbSNP
rs911715630 1679 dbSNP
rs933716504 1682 dbSNP
rs987315000 1683 dbSNP
rs922353782 1690 dbSNP
rs572449829 1693 dbSNP
rs1195916967 1696 dbSNP
rs1245532207 1698 dbSNP
rs1480308812 1705 dbSNP
rs559040556 1718 dbSNP
rs74741045 1719 dbSNP
rs1169828969 1720 dbSNP
rs1431912129 1721 dbSNP
rs377264305 1723 dbSNP
rs751169051 1723 dbSNP
rs1156464759 1732 dbSNP
rs550062665 1737 dbSNP
rs764745344 1739 dbSNP
rs1384936087 1740 dbSNP
rs776213579 1740 dbSNP
rs952291807 1741 dbSNP
rs1343625417 1745 dbSNP
rs757798001 1747 dbSNP
rs1447048029 1755 dbSNP
rs1237107381 1759 dbSNP
rs536874477 1763 dbSNP
rs1023764165 1767 dbSNP
rs1012836456 1770 dbSNP
rs1207031772 1774 dbSNP
rs1436664785 1780 dbSNP
rs1247982104 1782 dbSNP
rs1290216460 1782 dbSNP
rs961188482 1783 dbSNP
rs568032043 1792 dbSNP
rs1342633213 1794 dbSNP
rs1290822286 1798 dbSNP
rs1035174942 1802 dbSNP
rs1179181524 1812 dbSNP
rs548242725 1818 dbSNP
rs771055933 1818 dbSNP
rs1361580761 1821 dbSNP
rs1363174233 1822 dbSNP
rs542914846 1822 dbSNP
rs1284654415 1823 dbSNP
rs1441573700 1826 dbSNP
rs1048808691 1829 dbSNP
rs1306547757 1830 dbSNP
rs999641856 1833 dbSNP
rs902512333 1834 dbSNP
rs1043721552 1839 dbSNP
rs946614288 1840 dbSNP
rs1331159314 1841 dbSNP
rs4273 1847 dbSNP
rs1294631823 1849 dbSNP
rs1365156267 1850 dbSNP
rs1049547906 1851 dbSNP
rs1479848482 1852 dbSNP
rs756443666 1853 dbSNP
rs1195643196 1859 dbSNP
rs1249373965 1860 dbSNP
rs1183552744 1862 dbSNP
rs944622391 1867 dbSNP
rs565325391 1868 dbSNP
rs1426931777 1874 dbSNP
rs933810937 1877 dbSNP
rs1367438359 1886 dbSNP
rs911754321 1887 dbSNP
rs1297331736 1888 dbSNP
rs551763820 1891 dbSNP
rs1052952410 1893 dbSNP
rs753005613 1898 dbSNP
rs867244969 1904 dbSNP
rs922500124 1905 dbSNP
rs972881231 1912 dbSNP
rs939765356 1918 dbSNP
rs1469208591 1920 dbSNP
rs909523638 1922 dbSNP
rs74689577 1928 dbSNP
rs1252191824 1929 dbSNP
rs934461743 1934 dbSNP
rs113021382 1936 dbSNP
rs1183741539 1937 dbSNP
rs532226724 1938 dbSNP
rs1183683341 1941 dbSNP
rs1483199514 1946 dbSNP
rs1403147811 1947 dbSNP
rs1169689159 1949 dbSNP
rs1267721595 1949 dbSNP
rs1463366720 1952 dbSNP
rs1219997169 1953 dbSNP
rs1334938402 1955 dbSNP
rs1405699696 1955 dbSNP
rs1453464614 1956 dbSNP
rs17153378 1957 dbSNP
rs1049938 1964 dbSNP
rs991123373 1966 dbSNP
rs1223097353 1969 dbSNP
rs961138771 1969 dbSNP
rs1260864227 1973 dbSNP
rs1348428925 1974 dbSNP
rs1203921665 1976 dbSNP
rs960983958 1978 dbSNP
rs867930867 1983 dbSNP
rs759717440 1984 dbSNP
rs549106163 1988 dbSNP
rs1185833009 1989 dbSNP
rs1035630672 1997 dbSNP
rs999539563 1997 dbSNP
rs1478671331 1998 dbSNP
rs774527003 2000 dbSNP
rs1174080549 2003 dbSNP
rs766419464 2004 dbSNP
rs1470391125 2006 dbSNP
rs1178879328 2014 dbSNP
rs950821990 2016 dbSNP
rs1430164273 2019 dbSNP
rs1027424278 2021 dbSNP
rs1229079612 2024 dbSNP
rs1345177769 2026 dbSNP
rs994575738 2027 dbSNP
rs1346568386 2031 dbSNP
rs900190909 2034 dbSNP
rs1350790798 2037 dbSNP
rs1314587195 2040 dbSNP
rs1214521487 2044 dbSNP
rs1318271340 2046 dbSNP
rs1022216012 2065 dbSNP
rs775834082 2069 dbSNP
rs1010870601 2074 dbSNP
rs1197204703 2081 dbSNP
rs1267855183 2084 dbSNP
rs889828975 2089 dbSNP
rs1399512874 2090 dbSNP
rs1480658571 2099 dbSNP
rs1193102545 2102 dbSNP
rs1400189581 2110 dbSNP
rs1017270009 2125 dbSNP
rs1387732946 2125 dbSNP
rs1160824876 2127 dbSNP
rs1472602625 2129 dbSNP
rs1428174915 2132 dbSNP
rs1196791620 2134 dbSNP
rs1478901373 2145 dbSNP
rs1247121429 2146 dbSNP
rs1366554866 2146 dbSNP
rs1009263779 2149 dbSNP
rs1370809473 2152 dbSNP
rs890387516 2155 dbSNP
rs1050104851 2157 dbSNP
rs543898592 2161 dbSNP
rs578030070 2166 dbSNP
rs1052930390 2167 dbSNP
rs1307011496 2167 dbSNP
rs1220108918 2170 dbSNP
rs998142261 2172 dbSNP
rs900972752 2179 dbSNP
rs1036884575 2180 dbSNP
rs1230968040 2184 dbSNP
rs904338490 2185 dbSNP
rs374851780 2186 dbSNP
rs1469767940 2187 dbSNP
rs1043817075 2188 dbSNP
rs144766633 2188 dbSNP
rs916605608 2189 dbSNP
rs990827151 2192 dbSNP
rs1163485881 2196 dbSNP
rs1209456144 2197 dbSNP
rs939711489 2201 dbSNP
rs369920233 2202 dbSNP
rs1407427543 2205 dbSNP
rs909639651 2206 dbSNP
rs1281649711 2208 dbSNP
rs928240279 2210 dbSNP
rs1440959443 2211 dbSNP
rs1331652301 2212 dbSNP
rs1243203934 2213 dbSNP
rs529883406 2213 dbSNP
rs747851689 2213 dbSNP
rs950889599 2214 dbSNP
rs1027806119 2215 dbSNP
rs763076283 2216 dbSNP
rs1437051039 2217 dbSNP
rs1205453731 2219 dbSNP
rs1240317493 2221 dbSNP
rs1460030456 2222 dbSNP
rs1429052874 2225 dbSNP
rs1017739453 2226 dbSNP
rs1474024981 2227 dbSNP
rs560954292 2232 dbSNP
rs17153373 2235 dbSNP
rs1321737386 2237 dbSNP
rs759333833 2242 dbSNP
rs769705607 2244 dbSNP
rs998714147 2246 dbSNP
rs991469056 2247 dbSNP
rs1335423347 2250 dbSNP
rs961003567 2251 dbSNP
rs1425427563 2256 dbSNP
rs1450083362 2257 dbSNP
rs779212462 2262 dbSNP
rs1474270588 2265 dbSNP
rs928099658 2265 dbSNP
rs904385933 2269 dbSNP
rs1215008121 2272 dbSNP
rs1260227412 2272 dbSNP
rs1321588624 2273 dbSNP
rs1042866964 2275 dbSNP
rs572613516 2280 dbSNP
rs1460943647 2281 dbSNP
rs1243769731 2284 dbSNP
rs1261391767 2284 dbSNP
rs1444228666 2285 dbSNP
rs1191623953 2286 dbSNP
rs1242095281 2287 dbSNP
rs1475938608 2289 dbSNP
rs557773777 2291 dbSNP
rs1427658098 2295 dbSNP
rs558954009 2295 dbSNP
rs1175306551 2296 dbSNP
rs1402259125 2297 dbSNP
rs376889657 2297 dbSNP
rs1212288257 2301 dbSNP
rs946823139 2302 dbSNP
rs1316122013 2305 dbSNP
rs1325856930 2307 dbSNP
rs1313062904 2310 dbSNP
rs1400536081 2312 dbSNP
rs1279790233 2314 dbSNP
rs895238927 2319 dbSNP
rs966732382 2324 dbSNP
rs1022329240 2329 dbSNP
rs1347188443 2337 dbSNP
rs1203529271 2338 dbSNP
rs1055578106 2340 dbSNP
rs939385230 2341 dbSNP
rs1267165169 2342 dbSNP
rs1480338469 2344 dbSNP
rs1452615006 2347 dbSNP
rs927925966 2350 dbSNP
rs1381188556 2352 dbSNP
rs1334200011 2353 dbSNP
rs545425109 2357 dbSNP
rs954166705 2359 dbSNP
rs1359395430 2361 dbSNP
rs929541801 2361 dbSNP
rs1299995147 2367 dbSNP
rs1028337032 2373 dbSNP
rs1169226728 2373 dbSNP
rs1237172244 2377 dbSNP
rs1302227406 2377 dbSNP
rs1404160223 2377 dbSNP
rs534683903 2377 dbSNP
rs1408031368 2379 dbSNP
rs1278986521 2380 dbSNP
rs1354542652 2381 dbSNP
rs1219398060 2382 dbSNP
rs747969265 2390 dbSNP
rs1490285737 2394 dbSNP
rs1269924040 2395 dbSNP
rs1452920656 2397 dbSNP
rs1179254222 2400 dbSNP
rs1168965488 2403 dbSNP
rs901091737 2406 dbSNP
rs1160362183 2410 dbSNP
rs187250333 2414 dbSNP
rs1423763042 2415 dbSNP
rs182166665 2415 dbSNP
rs910322617 2417 dbSNP
rs1004039439 2419 dbSNP
rs536568515 2421 dbSNP
rs1328479385 2427 dbSNP
rs572435550 2429 dbSNP
rs1242474774 2433 dbSNP
rs1313546959 2434 dbSNP
rs888320066 2434 dbSNP
rs1246188236 2437 dbSNP
rs1183726645 2439 dbSNP
rs1479882793 2440 dbSNP
rs1193687794 2443 dbSNP
rs1483583710 2443 dbSNP
rs1048152036 2445 dbSNP
rs1180043126 2450 dbSNP
rs1202639756 2452 dbSNP
rs948478744 2453 dbSNP
rs1165434990 2454 dbSNP
rs1369946102 2457 dbSNP
rs968596493 2459 dbSNP
rs1275851865 2463 dbSNP
rs776517212 2464 dbSNP
rs1401380216 2466 dbSNP
rs567842517 2466 dbSNP
rs1056820465 2467 dbSNP
rs939561047 2470 dbSNP
rs1382159398 2474 dbSNP
rs1397085413 2480 dbSNP
rs1245697850 2487 dbSNP
rs1227233151 2488 dbSNP
rs1306106385 2488 dbSNP
rs928247016 2492 dbSNP
rs1257028987 2495 dbSNP
rs1318091747 2499 dbSNP
rs978348196 2499 dbSNP
rs554109805 2500 dbSNP
rs1482665590 2502 dbSNP
rs915434717 2504 dbSNP
rs1258246979 2505 dbSNP
rs534372777 2510 dbSNP
rs1315372867 2511 dbSNP
rs1192578082 2513 dbSNP
rs565438454 2517 dbSNP
rs1379211990 2519 dbSNP
rs1405406495 2519 dbSNP
rs894275461 2522 dbSNP
rs768452212 2523 dbSNP
rs1055228367 2527 dbSNP
rs1279175105 2530 dbSNP
rs1382161996 2530 dbSNP
rs1004019188 2532 dbSNP
rs1220053952 2536 dbSNP
rs906572321 2536 dbSNP
rs1439633144 2542 dbSNP
rs1210289394 2545 dbSNP
rs1257246467 2546 dbSNP
rs989511204 2547 dbSNP
rs954172972 2548 dbSNP
rs1215830142 2549 dbSNP
rs1263585969 2550 dbSNP
rs1478705729 2552 dbSNP
rs1197513926 2554 dbSNP
rs1424798988 2557 dbSNP
rs1028702129 2558 dbSNP
rs74646772 2560 dbSNP
rs965791534 2563 dbSNP
rs1453625996 2573 dbSNP
rs190065646 2576 dbSNP
rs779731471 2577 dbSNP
rs1366380647 2578 dbSNP
rs888265822 2580 dbSNP
rs1026836060 2581 dbSNP
rs1302695389 2584 dbSNP
rs943565728 2585 dbSNP
rs569584977 2586 dbSNP
rs757899896 2590 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cuuaGUGUUUACAGGAAUUAUc 5'
              ||:  |||  :|||||| 
Target 5' --uaCAUUUAUG-AUUUAAUAa 3'
1 - 19
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_002137 | 3UTR | AAUAUGCAGUGAUAUGGCAGAAGACACCAGAGCAGAUGCAGAGAGCCAUUUUGUGAAUGGAUUGGAUUAUUUAAUAACAUUACCUUACUGUGGAGGAAGGAUUGUAAAAAAAAAUGCCUUUGAGACAGUUUCUUAGCUUUUUAAUUGUUGUUUCUUUCUAGUGGUCUUUGUAAGAGUGUAGAAGCAUUCCUUCUUUGAUAAUGUUAAAUUUGUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_002137 | 3UTR | UUAAUAACAUUACCUUACUGUGGAGGAAGGAUUGUAAAAAAAAAUGCCUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_002137 | 3UTR | AUGCAGAGAGCCAUUUUGUGAAUGGAUUGGAUUAUUUAAUAACAUUACCUUACUGUGGAGGAAGGAUUGUAAAAAAAAAUGCCUUUGAGACAGUUUCUUAGCUUUUUAAUUGUUGUUUCUUUCUAGUGGUCUUUGUAAGAGUGUAGAAGCAUUCCUUCUUUGAUAAUGUUAAAUUUGUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_002137 | 3UTR | UAAUAACAUUACCUUACUGUGGAGGAAGGAUUGUAAAAAAAAAUGCCUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000354667.4 | 3UTR | UACAUUUAUGAUUUAAUAAAAUAAUUCUAAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-4477a Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055843 PLEKHA1 pleckstrin homology domain containing A1 2 10
MIRT061259 AMOTL1 angiomotin like 1 2 4
MIRT071895 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT076933 MLLT6 MLLT6, PHD finger containing 2 2
MIRT078652 ICT1 mitochondrial ribosomal protein L58 2 2
MIRT083633 PRNP prion protein 2 2
MIRT091629 RPL15 ribosomal protein L15 2 4
MIRT107076 PPP6C protein phosphatase 6 catalytic subunit 2 2
MIRT111191 TRIM33 tripartite motif containing 33 2 2
MIRT114515 ARF6 ADP ribosylation factor 6 2 2
MIRT175250 PSAT1 phosphoserine aminotransferase 1 2 4
MIRT175430 ACSL4 acyl-CoA synthetase long chain family member 4 2 2
MIRT178687 FAM102B family with sequence similarity 102 member B 2 2
MIRT189771 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT229450 RPL10 ribosomal protein L10 2 2
MIRT244899 PHF6 PHD finger protein 6 2 2
MIRT249189 AKIRIN1 akirin 1 2 8
MIRT261134 TRIM8 tripartite motif containing 8 2 2
MIRT275561 ZIC5 Zic family member 5 2 4
MIRT275652 ABHD13 abhydrolase domain containing 13 2 2
MIRT288082 UTP18 UTP18, small subunit processome component 2 2
MIRT303605 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT307924 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT316787 FOXC1 forkhead box C1 2 2
MIRT326910 SCML2 Scm polycomb group protein like 2 2 2
MIRT327713 SPIN4 spindlin family member 4 2 2
MIRT331632 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT342506 TMOD3 tropomodulin 3 2 4
MIRT354470 LRRC58 leucine rich repeat containing 58 2 2
MIRT378711 TRIM24 tripartite motif containing 24 2 2
MIRT407462 YDJC YdjC chitooligosaccharide deacetylase homolog 2 2
MIRT408226 SMAD5 SMAD family member 5 2 4
MIRT441824 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT442783 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT443184 NHS NHS actin remodeling regulator 2 4
MIRT447615 CUL3 cullin 3 2 2
MIRT450156 DSEL dermatan sulfate epimerase-like 2 2
MIRT454801 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 2 2
MIRT463050 ZNF644 zinc finger protein 644 2 2
MIRT467400 SOCS3 suppressor of cytokine signaling 3 2 2
MIRT468174 SGMS1 sphingomyelin synthase 1 2 2
MIRT468949 RPS14 ribosomal protein S14 2 6
MIRT469835 R3HDM4 R3H domain containing 4 2 2
MIRT470724 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT470902 PLIN3 perilipin 3 2 2
MIRT472467 NAPG NSF attachment protein gamma 2 12
MIRT472602 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit 2 2
MIRT492350 SEMA7A semaphorin 7A (John Milton Hagen blood group) 2 2
MIRT493840 FOXN3 forkhead box N3 2 4
MIRT496318 DOCK9 dedicator of cytokinesis 9 2 2
MIRT500159 CLEC2D C-type lectin domain family 2 member D 2 8
MIRT500535 XPO4 exportin 4 2 4
MIRT503916 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504003 SAT1 spermidine/spermine N1-acetyltransferase 1 2 4
MIRT505647 SHMT1 serine hydroxymethyltransferase 1 2 4
MIRT506574 MIER3 MIER family member 3 2 4
MIRT506945 HS3ST3B1 heparan sulfate-glucosamine 3-sulfotransferase 3B1 2 4
MIRT508196 RPS19 ribosomal protein S19 2 6
MIRT511417 HSPA13 heat shock protein family A (Hsp70) member 13 2 4
MIRT512326 ACTB actin beta 2 4
MIRT515376 RPL7 ribosomal protein L7 2 2
MIRT520422 TUBG1 tubulin gamma 1 2 4
MIRT524844 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT526320 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526561 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT528027 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT529874 RBM43 RNA binding motif protein 43 2 2
MIRT530826 CLEC4D C-type lectin domain family 4 member D 2 2
MIRT531334 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT532068 CCNB1 cyclin B1 2 4
MIRT532870 ZNF566 zinc finger protein 566 2 2
MIRT535580 NUP35 nucleoporin 35 2 2
MIRT537644 ERGIC2 ERGIC and golgi 2 2 4
MIRT537725 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT538894 BRI3BP BRI3 binding protein 2 2
MIRT538945 BMP2K BMP2 inducible kinase 2 2
MIRT540703 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT543210 TMEM117 transmembrane protein 117 2 3
MIRT543357 LYRM2 LYR motif containing 2 2 2
MIRT544905 CLSPN claspin 2 2
MIRT545532 ARF3 ADP ribosylation factor 3 2 2
MIRT546446 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT546882 PURB purine rich element binding protein B 2 4
MIRT547440 MED13 mediator complex subunit 13 2 2
MIRT548027 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548673 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT550435 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT551850 RPS3 ribosomal protein S3 2 2
MIRT556072 MRFAP1 Morf4 family associated protein 1 2 2
MIRT556554 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT557132 HOXA13 homeobox A13 2 2
MIRT557875 FEM1B fem-1 homolog B 2 4
MIRT558146 ELK4 ELK4, ETS transcription factor 2 2
MIRT558862 CD2AP CD2 associated protein 2 2
MIRT558884 CCNE1 cyclin E1 2 4
MIRT558907 CBX5 chromobox 5 2 2
MIRT559175 BRAP BRCA1 associated protein 2 2
MIRT560860 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561729 PPIF peptidylprolyl isomerase F 2 2
MIRT564024 CEBPB CCAAT/enhancer binding protein beta 2 2
MIRT564366 TRMT5 tRNA methyltransferase 5 2 2
MIRT564609 ZNF703 zinc finger protein 703 2 2
MIRT565494 AZF1 azoospermia factor 1 2 2
MIRT565577 SLC6A8 solute carrier family 6 member 8 2 2
MIRT566947 LEPROT leptin receptor overlapping transcript 2 2
MIRT567293 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 2 2
MIRT567308 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT568048 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT571807 PHF19 PHD finger protein 19 2 2
MIRT609234 RBM23 RNA binding motif protein 23 2 2
MIRT610328 SSX5 SSX family member 5 2 2
MIRT611428 UGT8 UDP glycosyltransferase 8 2 4
MIRT611709 SLFN13 schlafen family member 13 2 2
MIRT612069 CEP135 centrosomal protein 135 2 4
MIRT617676 JRKL JRK like 2 2
MIRT623684 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT635634 PRR15L proline rich 15 like 2 2
MIRT636422 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT637011 GPATCH11 G-patch domain containing 11 2 2
MIRT644150 C4orf3 chromosome 4 open reading frame 3 2 2
MIRT648562 MEMO1 mediator of cell motility 1 2 2
MIRT650752 WNT16 Wnt family member 16 2 2
MIRT651914 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT653556 SLC38A7 solute carrier family 38 member 7 2 2
MIRT692277 XRN2 5'-3' exoribonuclease 2 2 2
MIRT697650 WNK1 WNK lysine deficient protein kinase 1 2 2
MIRT703876 ERCC6 ERCC excision repair 6, chromatin remodeling factor 2 2
MIRT704615 CLIP1 CAP-Gly domain containing linker protein 1 2 2
MIRT708562 BBOX1 gamma-butyrobetaine hydroxylase 1 2 2
MIRT709614 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT712955 SGCD sarcoglycan delta 2 2
MIRT713502 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT720239 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT724255 GLUD1 glutamate dehydrogenase 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4477a Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-4477a Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4477a Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)

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