pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CSTF2   
Synonyms CstF-64
Description cleavage stimulation factor subunit 2
Transcript NM_001325   
Expression
Putative miRNA Targets on CSTF2
3'UTR of CSTF2
(miRNA target sites are highlighted)
>CSTF2|NM_001325|3'UTR
   1 TAGGTTTTCAAAAATACCTGGCAAGAAATCTGGAAATTCTATAATTTTGTTGAAATATTGAAAAAAGATGACCTGCATCC
  81 TAACCCTTGAATGACTCAAATCAGTGCCAGGTGGAGGACTCCCATCACCTTCTCTCAGAACAAAATCACTTCATTTTATT
 161 GTCTTAGTTTGTATATTTTCTGTGACTTGAAATAAACTTTGAACACAATTTTAGTACACTGCAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' agGACCU---ACGU-UUAAAAu 5'
            |||||   | :| |||||| 
Target 5' atCTGGAAATTCTATAATTTTg 3'
28 - 49 124.00 -7.90
2
miRNA  3' agGACC-UACGUUUAaaau 5'
            |||| | | ||||    
Target 5' acCTGGCAAG-AAATctgg 3'
16 - 33 91.00 -7.55
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs369509310 12 dbSNP
rs1467080043 14 dbSNP
rs759544335 14 dbSNP
rs765184423 16 dbSNP
rs1453722104 32 dbSNP
rs775371026 34 dbSNP
rs1195559336 42 dbSNP
rs768698797 46 dbSNP
rs1205089754 52 dbSNP
rs776755593 80 dbSNP
rs1000459783 89 dbSNP
rs1249913076 89 dbSNP
rs1001323715 98 dbSNP
rs1018011425 99 dbSNP
rs1254621016 111 dbSNP
rs1234065869 134 dbSNP
rs1339204170 138 dbSNP
rs1205959815 153 dbSNP
rs899595610 156 dbSNP
rs1482691132 159 dbSNP
rs1333412579 161 dbSNP
rs761917441 164 dbSNP
rs13340756 165 dbSNP
rs1398269432 176 dbSNP
rs1310814785 183 dbSNP
rs773358306 191 dbSNP
rs1052450359 211 dbSNP
rs140575080 230 dbSNP
rs1468544604 248 dbSNP
rs1363288635 268 dbSNP
rs1423055189 269 dbSNP
rs1218445141 275 dbSNP
rs375237575 282 dbSNP
rs188516894 289 dbSNP
rs1172555092 294 dbSNP
rs1373866483 303 dbSNP
rs751909555 320 dbSNP
rs1254391226 329 dbSNP
rs1465730631 339 dbSNP
rs1486182248 343 dbSNP
rs542524482 344 dbSNP
rs1282920028 348 dbSNP
rs1227524824 349 dbSNP
rs1278442460 358 dbSNP
rs1025259422 361 dbSNP
rs1377028474 371 dbSNP
rs1337141769 397 dbSNP
rs1291007987 408 dbSNP
rs1413791982 417 dbSNP
rs1375772241 425 dbSNP
rs969610486 428 dbSNP
rs1398875880 431 dbSNP
rs954924412 456 dbSNP
rs181059913 457 dbSNP
rs1015169719 467 dbSNP
rs767981484 475 dbSNP
rs1415806108 484 dbSNP
rs1215829821 490 dbSNP
rs1475667295 491 dbSNP
rs1260038595 498 dbSNP
rs963560699 513 dbSNP
rs144795909 514 dbSNP
rs528098972 530 dbSNP
rs780432044 533 dbSNP
rs1311317065 537 dbSNP
rs1352165703 548 dbSNP
rs937424730 549 dbSNP
rs2213514 558 dbSNP
rs374951167 559 dbSNP
rs755141815 564 dbSNP
rs1041636990 566 dbSNP
rs1294863630 580 dbSNP
rs951836554 581 dbSNP
rs1325660538 589 dbSNP
rs984907496 596 dbSNP
rs904467670 624 dbSNP
rs781422730 625 dbSNP
rs1402383141 636 dbSNP
rs1211990211 688 dbSNP
rs1392308920 697 dbSNP
rs1164380016 700 dbSNP
rs1462161743 705 dbSNP
rs1263124848 727 dbSNP
rs1420347505 729 dbSNP
rs778227916 733 dbSNP
rs935822206 734 dbSNP
rs1039963204 737 dbSNP
rs1487558690 750 dbSNP
rs1243087214 756 dbSNP
rs899544018 757 dbSNP
rs923232865 761 dbSNP
rs1250591995 765 dbSNP
rs1262503691 766 dbSNP
rs1335046698 779 dbSNP
rs1274604996 789 dbSNP
rs186557162 790 dbSNP
rs998353935 797 dbSNP
rs868786555 814 dbSNP
rs1397077856 819 dbSNP
rs1368785971 835 dbSNP
rs1325270419 844 dbSNP
rs1441799653 849 dbSNP
rs1396812748 850 dbSNP
rs1168553444 855 dbSNP
rs886772771 857 dbSNP
rs913364117 861 dbSNP
rs1420652005 864 dbSNP
rs1435128445 880 dbSNP
rs1453083760 887 dbSNP
rs1194822421 888 dbSNP
rs757979836 888 dbSNP
rs866110170 888 dbSNP
rs1201938831 889 dbSNP
rs1157767173 907 dbSNP
rs1358553616 908 dbSNP
rs1273445406 950 dbSNP
rs1003858718 952 dbSNP
rs779908637 954 dbSNP
rs1345614445 957 dbSNP
rs368820361 962 dbSNP
rs1302527425 965 dbSNP
rs1234971134 966 dbSNP
rs1015100631 978 dbSNP
rs963984278 982 dbSNP
rs925069947 990 dbSNP
rs936788341 995 dbSNP
rs7879097 999 dbSNP
rs1384755234 1000 dbSNP
rs1394884614 1001 dbSNP
rs768608836 1002 dbSNP
rs1455975796 1022 dbSNP
rs1034938596 1035 dbSNP
rs75981565 1051 dbSNP
rs776594946 1058 dbSNP
rs1426650770 1059 dbSNP
rs1175045267 1068 dbSNP
rs958934312 1068 dbSNP
rs1469283680 1071 dbSNP
rs1233153450 1085 dbSNP
rs946197492 1122 dbSNP
rs1305216526 1130 dbSNP
rs190662039 1133 dbSNP
rs769778353 1142 dbSNP
rs917360789 1146 dbSNP
rs949388752 1169 dbSNP
rs1046428217 1171 dbSNP
rs905476867 1183 dbSNP
rs967356813 1202 dbSNP
rs977434012 1218 dbSNP
rs769931167 1230 dbSNP
rs935921208 1244 dbSNP
rs1039507885 1247 dbSNP
rs1313934535 1257 dbSNP
rs1437123228 1264 dbSNP
rs888587763 1319 dbSNP
rs1005980950 1320 dbSNP
rs1408119245 1346 dbSNP
rs1417952851 1346 dbSNP
rs1183814286 1355 dbSNP
rs1015113092 1358 dbSNP
rs921089282 1358 dbSNP
rs1188438714 1365 dbSNP
rs961769113 1376 dbSNP
rs1258841100 1378 dbSNP
rs933879802 1385 dbSNP
rs182900448 1394 dbSNP
rs1242820823 1399 dbSNP
rs1270102302 1408 dbSNP
rs1488216478 1414 dbSNP
rs1029921437 1416 dbSNP
rs953300344 1429 dbSNP
rs749315156 1430 dbSNP
rs1003809651 1437 dbSNP
rs1288757616 1445 dbSNP
rs1177848381 1448 dbSNP
rs1454767273 1450 dbSNP
rs1191064445 1463 dbSNP
rs925154773 1469 dbSNP
rs1160821626 1474 dbSNP
rs763153530 1494 dbSNP
rs1416778957 1495 dbSNP
rs936531148 1497 dbSNP
rs1425292245 1518 dbSNP
rs1259399511 1531 dbSNP
rs1185796595 1532 dbSNP
rs1402423744 1537 dbSNP
rs1249980188 1551 dbSNP
rs1159701540 1575 dbSNP
rs1349186486 1577 dbSNP
rs1455951538 1581 dbSNP
rs899380731 1583 dbSNP
rs73250631 1585 dbSNP
rs766568384 1585 dbSNP
rs914012255 1585 dbSNP
rs760881879 1600 dbSNP
rs1295327728 1618 dbSNP
rs1371370159 1624 dbSNP
rs1034644829 1626 dbSNP
rs1321943006 1631 dbSNP
rs1438017930 1637 dbSNP
rs1309055773 1651 dbSNP
rs143596333 1652 dbSNP
rs1459130207 1652 dbSNP
rs1225792261 1658 dbSNP
rs1014458597 1671 dbSNP
rs1169560802 1679 dbSNP
rs761231066 1679 dbSNP
rs1429020214 1701 dbSNP
rs1046440782 1702 dbSNP
rs1468061929 1729 dbSNP
rs1253709580 1732 dbSNP
rs770818986 1738 dbSNP
rs767821484 1740 dbSNP
rs977381758 1744 dbSNP
rs1469119196 1745 dbSNP
rs5967201 1745 dbSNP
rs1198223764 1746 dbSNP
rs925956833 1753 dbSNP
rs1301827738 1757 dbSNP
rs1471055706 1759 dbSNP
rs938261009 1761 dbSNP
rs1049091896 1767 dbSNP
rs1412991319 1781 dbSNP
rs1421910799 1782 dbSNP
rs957429881 1787 dbSNP
rs1323708580 1788 dbSNP
rs1388144340 1803 dbSNP
rs1166549161 1814 dbSNP
rs888689816 1818 dbSNP
rs1004828870 1820 dbSNP
rs975734034 1824 dbSNP
rs1464817863 1843 dbSNP
rs1171613717 1859 dbSNP
rs1453742775 1862 dbSNP
rs921215643 1869 dbSNP
rs933813822 1870 dbSNP
rs1417529642 1871 dbSNP
rs113280965 1874 dbSNP
rs753119361 1885 dbSNP
rs1484200926 1894 dbSNP
rs1248991749 1910 dbSNP
rs908260135 1915 dbSNP
rs939781236 1924 dbSNP
rs985802757 1935 dbSNP
rs1444834441 1952 dbSNP
rs187121793 1956 dbSNP
rs1038156296 1957 dbSNP
rs1280436205 1967 dbSNP
rs898150114 1978 dbSNP
rs1333502874 1983 dbSNP
rs1305802576 1985 dbSNP
rs1410060439 1994 dbSNP
rs1231985409 2004 dbSNP
rs1352042329 2028 dbSNP
rs1032695800 2034 dbSNP
rs1295253529 2045 dbSNP
rs1434025475 2045 dbSNP
rs1001898965 2075 dbSNP
rs764727889 2078 dbSNP
rs894739409 2080 dbSNP
rs1014409518 2082 dbSNP
rs759428020 2090 dbSNP
rs1183089933 2099 dbSNP
rs967421758 2110 dbSNP
rs998932668 2114 dbSNP
rs1187725377 2117 dbSNP
rs1204956940 2126 dbSNP
rs1486271261 2145 dbSNP
rs1033140061 2149 dbSNP
rs1203929270 2171 dbSNP
rs1236670379 2174 dbSNP
rs868636668 2176 dbSNP
rs957584838 2185 dbSNP
rs1228612410 2195 dbSNP
rs975470283 2196 dbSNP
rs1028631682 2198 dbSNP
rs1413885257 2199 dbSNP
rs955292769 2202 dbSNP
rs1418439358 2211 dbSNP
rs986560873 2216 dbSNP
rs1336015190 2217 dbSNP
rs908373509 2221 dbSNP
rs1384330225 2225 dbSNP
rs749885951 2227 dbSNP
rs1160083383 2232 dbSNP
rs1458988200 2241 dbSNP
rs112627370 2246 dbSNP
rs1164511995 2256 dbSNP
rs1473308177 2259 dbSNP
rs775289253 2268 dbSNP
rs1191593786 2273 dbSNP
rs1446995724 2276 dbSNP
rs1410178898 2277 dbSNP
rs1246882733 2284 dbSNP
rs1208857158 2289 dbSNP
rs1330750047 2292 dbSNP
rs919716104 2299 dbSNP
rs1232303655 2300 dbSNP
rs1356710825 2309 dbSNP
rs937644055 2311 dbSNP
rs765401301 2328 dbSNP
rs1054816583 2329 dbSNP
rs1413512997 2336 dbSNP
rs1321273836 2340 dbSNP
rs1325825273 2340 dbSNP
rs1437303374 2347 dbSNP
rs1315394440 2351 dbSNP
rs1392416247 2367 dbSNP
rs1325395328 2369 dbSNP
rs779818627 2380 dbSNP
rs894692680 2386 dbSNP
rs751211682 2389 dbSNP
rs141629759 2408 dbSNP
rs903348693 2412 dbSNP
rs1268418759 2422 dbSNP
rs1341810480 2425 dbSNP
rs999059643 2432 dbSNP
rs1166589795 2436 dbSNP
rs1475357729 2437 dbSNP
rs1033500778 2445 dbSNP
rs1391381805 2452 dbSNP
rs1191086022 2453 dbSNP
rs1465804580 2461 dbSNP
rs1250609242 2473 dbSNP
rs1220353498 2497 dbSNP
rs893235891 2523 dbSNP
rs997210017 2527 dbSNP
rs1212637069 2531 dbSNP
rs7062004 2547 dbSNP
rs901326554 2561 dbSNP
rs111821384 2587 dbSNP
rs955406730 2596 dbSNP
rs748045325 2607 dbSNP
rs1437456866 2614 dbSNP
rs1051489957 2630 dbSNP
rs1487884672 2635 dbSNP
rs763721458 2651 dbSNP
rs961182623 2653 dbSNP
rs973945663 2663 dbSNP
rs1392714432 2670 dbSNP
rs1475565243 2673 dbSNP
rs1190168600 2674 dbSNP
rs1478138563 2687 dbSNP
rs1007676543 2694 dbSNP
rs111425079 2703 dbSNP
rs1392833602 2706 dbSNP
rs1275108245 2712 dbSNP
rs1433270655 2722 dbSNP
rs1175853534 2727 dbSNP
rs1345728219 2740 dbSNP
rs777816815 2743 dbSNP
rs1219941738 2756 dbSNP
rs1376595333 2761 dbSNP
rs1369852316 2778 dbSNP
rs1277930679 2781 dbSNP
rs1441764910 2787 dbSNP
rs990858933 2794 dbSNP
rs1351468876 2824 dbSNP
rs373189427 2829 dbSNP
rs1433366289 2830 dbSNP
rs949072538 2835 dbSNP
rs758988598 2840 dbSNP
rs1375425078 2856 dbSNP
rs903467716 2858 dbSNP
rs1316383241 2874 dbSNP
rs1414502703 2883 dbSNP
rs183028366 2903 dbSNP
rs1431524514 2906 dbSNP
rs1472093765 2910 dbSNP
rs1252271055 2936 dbSNP
rs1184132489 2943 dbSNP
rs1484639727 2947 dbSNP
rs958203077 2948 dbSNP
rs1009446742 2949 dbSNP
rs1313962070 2951 dbSNP
rs1054650278 2974 dbSNP
rs1228007685 2975 dbSNP
rs138737369 2976 dbSNP
rs187652717 2978 dbSNP
rs1413269283 2984 dbSNP
rs996931259 2986 dbSNP
rs1378938188 2992 dbSNP
rs1236229045 2995 dbSNP
rs1303869028 3020 dbSNP
rs755338291 3024 dbSNP
rs1360378295 3043 dbSNP
rs1156399166 3061 dbSNP
rs781332722 3068 dbSNP
rs1352973382 3073 dbSNP
rs1203288946 3075 dbSNP
rs926716334 3085 dbSNP
rs1285792769 3086 dbSNP
rs1182359611 3100 dbSNP
rs891105243 3110 dbSNP
rs1008211588 3113 dbSNP
rs1484230951 3115 dbSNP
rs1447108606 3126 dbSNP
rs1208240424 3130 dbSNP
rs959478255 3132 dbSNP
rs1270202623 3153 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000415585.2 | 3UTR | AUAUUUUCUGUGACUUGAAAUAAACUUUGAACACAAUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

Error report submission