pre-miRNA Information
pre-miRNA hsa-mir-4260   
Genomic Coordinates chr1: 209623444 - 209623510
Description Homo sapiens miR-4260 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4260
Sequence 11| CUUGGGGCAUGGAGUCCCA |29
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM7908770 6 COSMIC
COSN30117883 7 COSMIC
COSN26730871 12 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs372999583 2 dbSNP
rs1367351910 8 dbSNP
rs1266505194 15 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol IL21R   
Synonyms CD360, NILR
Description interleukin 21 receptor
Transcript NM_021798   
Other Transcripts NM_181078 , NM_181079   
Expression
Putative miRNA Targets on IL21R
3'UTR of IL21R
(miRNA target sites are highlighted)
>IL21R|NM_021798|3'UTR
   1 TGAGGCTGACTGGATGTCCAGAGCTGGCCAGGCCACTGGGCCCTGAGCCAGAGACAAGGTCACCTGGGCTGTGATGTGAA
  81 GACACCTGCAGCCTTTGGTCTCCTGGATGGGCCTTTGAGCCTGATGTTTACAGTGTCTGTGTGTGTGTGTGCATATGTGT
 161 GTGTGTGCATATGCATGTGTGTGTGTGTGTGTGTCTTAGGTGCGCAGTGGCATGTCCACGTGTGTGTGTGATTGCACGTG
 241 CCTGTGGGCCTGGGATAATGCCCATGGTACTCCATGCATTCACCTGCCCTGTGCATGTCTGGACTCACGGAGCTCACCCA
 321 TGTGCACAAGTGTGCACAGTAAACGTGTTTGTGGTCAACAGATGACAACAGCCGTCCTCCCTCCTAGGGTCTTGTGTTGC
 401 AAGTTGGTCCACAGCATCTCCGGGGCTTTGTGGGATCAGGGCATTGCCTGTGACTGAGGCGGAGCCCAGCCCTCCAGCGT
 481 CTGCCTCCAGGAGCTGCAAGAAGTCCATATTGTTCCTTATCACCTGCCAACAGGAAGCGAAAGGGGATGGAGTGAGCCCA
 561 TGGTGACCTCGGGAATGGCAATTTTTTGGGCGGCCCCTGGACGAAGGTCTGAATCCCGACTCTGATACCTTCTGGCTGTG
 641 CTACCTGAGCCAAGTCGCCTCCCCTCTCTGGGCTAGAGTTTCCTTATCCAGACAGTGGGGAAGGCATGACACACCTGGGG
 721 GAAATTGGCGATGTCACCCGTGTACGGTACGCAGCCCAGAGCAGACCCTCAATAAACGTCAGCTTCCTTCCTTCTGCGGC
 801 CAGAGCCGAGGCGGGCGGGGGTGAGAACATCAATCGTCAGCGACAGCCTGGGCACCCGCGGGGCCGTCCCGCCTGCAGAG
 881 GGCCACTCGGGGGGGTTTCCAGGCTTAAAATCAGTCCGTTTCGTCTCTTGGAAACAGCTCCCCACCAACCAAGATTTCTT
 961 TTTCTAACTTCTGCTACTAAGTTTTTAAAAATTCCCTTTATGCACCCAAGAGATATTTATTAAACACCAATTACGTAGCA
1041 GGCCATGGCTCATGGGACCCACCCCCCGTGGCACTCATGGAGGGGGCTGCAGGTTGGAACTATGCAGTGTGCTCCGGCCA
1121 CACATCCTGCTGGGCCCCCTACCCTGCCCCAATTCAATCCTGCCAATAAATCCTGTCTTATTTGTTCATCCTGGAGAATT
1201 GAAGGGAGGTCAAGTTGTTTGTCAATGATTTGTCAGAGAACCTGTTGAAATGTGAATTAAGAAGCTAAGAAAATATTTCT
1281 TAGCAACATTTTCTTTTTCTTTTTTTTTTTTTTCTTTTGAGACAGAGTCTCACTCTCGTCGCCCAGGCTGGAATGCAGTG
1361 GTGCGATCTCGGCTCTCTGCAACCTCTGTCTCCCGGGTTCAAGCGATTTCCTGCGTCAGCCCCAGAGTAGCTGGAATTAC
1441 AGGCACACACCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGCTGGGGCCACCCTGGCCCGGCCCCGTCTTCCTCC
1521 CCAAAGGTCAGACTGCAGGCTGCAGGGCTGTGCTGGAGGAGCCAGCTCTAGCTCACCCATGCTTTTGCAACAGGGTCGGG
1601 TTGGAAGTCAGCACAGGTCAGTCCTGCGGAAGGTTCCTTCGTGACTCATCTGTGAAGTGGGGTGGTTGGGAGAGGTAGCT
1681 GAGAGAATGCATGAGAGTCCTCGGTGCCTGGCAGGAGGCTGGAAGGTTCTAGAACACTGATGGTTATAAGAGTGGGACTG
1761 TGAGCCTGGGATCGGGGGGTGTGAGACTTGGATGGGAGCACAAGAGTGGAAACACAGCTTCTGCACGGAGCAGGCGCAGC
1841 CCTCAACACCCCGTGCACCTGCACCCTAGGGACTCTTGGGTCCAGATGTGCTGTGGTTTTCACACCTTCTTGGGGGCAAC
1921 AGGTTCCAGGAGCCACCTGTGGGTGCCACCTGAGCCACAGGCTCCCAGGAAAGCAGCACAGCTCTCCTGCACCCAGAGCT
2001 TGCTGGGTGGCGGAGGGGAACACAGATGGTTGGGGAAGGCCTGAGGCCAGATTGGGGGACTCTGGACTGGGGCAGATGAG
2081 GCTCCTCAGAATCCCACCTTTGAAGGGAACTCAGCTTATAAACACAGAGGAGCAAAGTTGGAGGGCCGGGCGTAGTGGCT
2161 CACACCTGTGATCTCAGCACTTTGGGAGGCCAAGGAAGGTGGATCACTTGAGGCCAGGAGTTCGAGACCAGCCTGGGCAA
2241 CATAGCAAGGCCCCATCTCTACAAAAATTATTATTTTTTAAAAAAATTAGCCAGGTGTGGTGGTGCTTGCCTATAGTCCC
2321 AGCTACTCGGGAGGCTAAGGTGGGAGGATCGCTGGAGCCCAGGAATTTGAGGCTGCAGTGAGCTGTGATTACACCGTTGC
2401 ACTCCAGCCTGGGTCACAGATCAAGACCCTGTCTCTTAAAAATAAAAGTTGGAGACAAGAGCTGGCTCACCTGAAAGGAG
2481 GGATTAGTAGGTAGGAGGGTGGATGGAGGATGGATGGATGTGTGGGTGGATAGGAAGATGGTATTAAGTTGGTGCAAAAG
2561 TCTTTGATATTACTCTTAATGGCTTTAATAAAAAGCTTGAAGGAAGAATGATTGGTTGGATAGACAGAGATAAATGCATA
2641 CTGGAAACAAAGATAAAGATAAAACACAAGTTATACCAGGCCAGCAACTCTATTTTGTTCACTGCCTTTAGTCCCAGCCT
2721 GGCACATAGTAGGCACTCAATAAAGCCTGATTTGTAGCAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' acccuGA-GGUACGGGGUUc 5'
               || || |||||||| 
Target 5' gccccCTACCCTGCCCCAAt 3'
1134 - 1153 154.00 -15.30
2
miRNA  3' acccuGAGGUA--CGGGGUUc 5'
               || |:|  ||||||: 
Target 5' atttcCTGCGTCAGCCCCAGa 3'
1406 - 1426 132.00 -14.10
3
miRNA  3' acccuGAGGUACG-GGGUUc 5'
               ||::|||| ||||| 
Target 5' attccCTTTATGCACCCAAg 3'
991 - 1010 130.00 -18.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30149414 3 COSMIC
COSN30175510 7 COSMIC
COSN30457236 8 COSMIC
COSN19662542 14 COSMIC
COSN19671777 43 COSMIC
COSN30108162 48 COSMIC
COSN31507753 60 COSMIC
COSN30492486 72 COSMIC
COSN30187196 97 COSMIC
COSN30487953 98 COSMIC
COSN26440700 140 COSMIC
COSN23092020 194 COSMIC
COSN9645186 208 COSMIC
COSN1184895 304 COSMIC
COSN17557430 330 COSMIC
COSN17999982 823 COSMIC
COSN27616728 855 COSMIC
COSN8496868 1224 COSMIC
COSN6083186 1504 COSMIC
COSN21757520 1569 COSMIC
COSN19354314 1599 COSMIC
COSN5759492 1669 COSMIC
COSN8231306 1836 COSMIC
COSN8231307 1863 COSMIC
COSN29589825 1935 COSMIC
COSN7303501 2007 COSMIC
COSN1696685 2216 COSMIC
COSN20631450 2228 COSMIC
COSN22038078 2280 COSMIC
COSN22206942 2397 COSMIC
COSN8496870 2563 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs920321683 6 dbSNP
rs771983722 15 dbSNP
rs56235678 20 dbSNP
rs1317656708 23 dbSNP
rs1247144630 31 dbSNP
rs929098860 35 dbSNP
rs371520460 38 dbSNP
rs1214333395 45 dbSNP
rs1254951251 46 dbSNP
rs1437823302 48 dbSNP
rs775515407 49 dbSNP
rs983573651 50 dbSNP
rs3093409 56 dbSNP
rs920541395 58 dbSNP
rs912068385 82 dbSNP
rs1300546209 89 dbSNP
rs1423021035 103 dbSNP
rs1367660864 106 dbSNP
rs1165268952 114 dbSNP
rs796522509 119 dbSNP
rs140357653 122 dbSNP
rs550346426 123 dbSNP
rs916631403 124 dbSNP
rs944917691 126 dbSNP
rs771289394 136 dbSNP
rs1223729392 138 dbSNP
rs1419573990 138 dbSNP
rs1489747789 138 dbSNP
rs376985254 138 dbSNP
rs1023231626 140 dbSNP
rs900471839 140 dbSNP
rs1266644884 147 dbSNP
rs1241894948 153 dbSNP
rs1282783936 156 dbSNP
rs935525065 156 dbSNP
rs1053950842 159 dbSNP
rs1367726116 160 dbSNP
rs1303920288 162 dbSNP
rs1405748589 162 dbSNP
rs1384042476 164 dbSNP
rs1487235232 169 dbSNP
rs1156587535 170 dbSNP
rs1208501491 172 dbSNP
rs1491231805 174 dbSNP
rs1491459849 175 dbSNP
rs770366293 175 dbSNP
rs1029076951 176 dbSNP
rs1207241222 176 dbSNP
rs1263023530 176 dbSNP
rs147165457 176 dbSNP
rs35044665 176 dbSNP
rs935986739 176 dbSNP
rs568031233 178 dbSNP
rs1190982931 186 dbSNP
rs386384562 186 dbSNP
rs1283983484 191 dbSNP
rs1430356457 193 dbSNP
rs1324876370 196 dbSNP
rs1009052678 203 dbSNP
rs891882569 204 dbSNP
rs1010334559 205 dbSNP
rs546817713 209 dbSNP
rs566627093 212 dbSNP
rs117123151 220 dbSNP
rs961862211 220 dbSNP
rs185275129 221 dbSNP
rs569159992 225 dbSNP
rs906382593 231 dbSNP
rs550364520 233 dbSNP
rs57456215 238 dbSNP
rs1292815211 239 dbSNP
rs1034002884 240 dbSNP
rs959344710 242 dbSNP
rs973478003 256 dbSNP
rs1202386279 257 dbSNP
rs568918215 265 dbSNP
rs1326269369 266 dbSNP
rs1279468546 267 dbSNP
rs143557611 275 dbSNP
rs1337719893 278 dbSNP
rs1272107077 287 dbSNP
rs188590547 289 dbSNP
rs116420278 292 dbSNP
rs2285452 294 dbSNP
rs1335835409 299 dbSNP
rs1314431837 309 dbSNP
rs770150603 310 dbSNP
rs1334267957 313 dbSNP
rs1053898889 314 dbSNP
rs557968085 327 dbSNP
rs1449688721 331 dbSNP
rs944886717 335 dbSNP
rs541998112 337 dbSNP
rs574966814 346 dbSNP
rs932231781 373 dbSNP
rs1203953577 374 dbSNP
rs192781264 375 dbSNP
rs1275400415 380 dbSNP
rs1229498536 381 dbSNP
rs1358956048 395 dbSNP
rs1426742336 398 dbSNP
rs936306093 407 dbSNP
rs544301639 422 dbSNP
rs1054855350 423 dbSNP
rs1381286629 425 dbSNP
rs890113528 435 dbSNP
rs564456793 438 dbSNP
rs1008595194 441 dbSNP
rs763154541 442 dbSNP
rs891804811 443 dbSNP
rs1485764619 444 dbSNP
rs1162089388 457 dbSNP
rs1446784294 461 dbSNP
rs533273973 462 dbSNP
rs3093387 465 dbSNP
rs1416251379 479 dbSNP
rs907317059 480 dbSNP
rs1205929459 494 dbSNP
rs1003770701 497 dbSNP
rs1033559548 500 dbSNP
rs1219978219 511 dbSNP
rs1164219604 514 dbSNP
rs560563265 526 dbSNP
rs1412590874 528 dbSNP
rs895049678 529 dbSNP
rs1223220037 531 dbSNP
rs1371057328 539 dbSNP
rs1289735701 540 dbSNP
rs1409854032 544 dbSNP
rs1344511240 545 dbSNP
rs1458703838 547 dbSNP
rs958600646 564 dbSNP
rs1013246995 566 dbSNP
rs529125869 567 dbSNP
rs3093388 571 dbSNP
rs184150559 572 dbSNP
rs924002793 575 dbSNP
rs1480111050 581 dbSNP
rs1394919179 582 dbSNP
rs983133276 584 dbSNP
rs1201934617 590 dbSNP
rs116214834 592 dbSNP
rs965790815 594 dbSNP
rs555770972 596 dbSNP
rs922157829 597 dbSNP
rs2239928 598 dbSNP
rs1266787759 600 dbSNP
rs571262828 603 dbSNP
rs544877059 604 dbSNP
rs1367841334 612 dbSNP
rs1288678598 616 dbSNP
rs912162903 619 dbSNP
rs946018275 625 dbSNP
rs779376064 626 dbSNP
rs944350339 630 dbSNP
rs1469723133 637 dbSNP
rs1187526706 640 dbSNP
rs1045787020 643 dbSNP
rs1261243559 646 dbSNP
rs1185750106 648 dbSNP
rs1036034191 650 dbSNP
rs1252579420 657 dbSNP
rs928703520 658 dbSNP
rs1460814216 659 dbSNP
rs753216554 661 dbSNP
rs937478267 670 dbSNP
rs897546347 676 dbSNP
rs148105665 688 dbSNP
rs199730886 698 dbSNP
rs1294323102 709 dbSNP
rs1414819444 711 dbSNP
rs1048881141 712 dbSNP
rs1367864443 714 dbSNP
rs758997634 720 dbSNP
rs1404516037 722 dbSNP
rs368414418 726 dbSNP
rs1465193022 728 dbSNP
rs1308297069 730 dbSNP
rs1048978916 731 dbSNP
rs553478944 740 dbSNP
rs1372727504 746 dbSNP
rs1168532058 747 dbSNP
rs1451546047 749 dbSNP
rs1391857822 751 dbSNP
rs1012781373 752 dbSNP
rs886384963 755 dbSNP
rs971357700 756 dbSNP
rs1241153391 759 dbSNP
rs1201676909 773 dbSNP
rs1003458964 778 dbSNP
rs140996394 779 dbSNP
rs1202083277 783 dbSNP
rs1030967437 784 dbSNP
rs1298869467 790 dbSNP
rs1281105412 791 dbSNP
rs747088245 798 dbSNP
rs3093410 799 dbSNP
rs1275633223 800 dbSNP
rs1431906413 801 dbSNP
rs1371346109 802 dbSNP
rs74016080 808 dbSNP
rs995947016 809 dbSNP
rs1180188631 813 dbSNP
rs986336953 814 dbSNP
rs1029552510 816 dbSNP
rs1179355280 817 dbSNP
rs1249251835 817 dbSNP
rs1483846854 818 dbSNP
rs1192876182 821 dbSNP
rs923274231 823 dbSNP
rs1357671897 834 dbSNP
rs188480593 836 dbSNP
rs564613095 837 dbSNP
rs957575345 842 dbSNP
rs1305021386 843 dbSNP
rs578004579 847 dbSNP
rs913469380 849 dbSNP
rs1351342873 857 dbSNP
rs1302719103 858 dbSNP
rs972343947 859 dbSNP
rs967663434 860 dbSNP
rs981435329 861 dbSNP
rs928630014 866 dbSNP
rs1179436281 867 dbSNP
rs3093411 871 dbSNP
rs1055899179 872 dbSNP
rs1198313620 873 dbSNP
rs545471150 877 dbSNP
rs191475638 880 dbSNP
rs1437756783 881 dbSNP
rs1210787929 882 dbSNP
rs1277123886 888 dbSNP
rs1045570872 889 dbSNP
rs1048904315 889 dbSNP
rs1230315909 890 dbSNP
rs143296470 891 dbSNP
rs1282717486 892 dbSNP
rs1403377747 894 dbSNP
rs1333023344 897 dbSNP
rs998719279 907 dbSNP
rs562665378 909 dbSNP
rs1031586878 916 dbSNP
rs3093412 918 dbSNP
rs1156790786 923 dbSNP
rs1458741482 924 dbSNP
rs901528331 950 dbSNP
rs1344626364 951 dbSNP
rs1175049522 959 dbSNP
rs1203080644 972 dbSNP
rs996300086 974 dbSNP
rs75657259 983 dbSNP
rs1200031668 988 dbSNP
rs1446724657 999 dbSNP
rs1246557144 1006 dbSNP
rs957372654 1008 dbSNP
rs571429764 1009 dbSNP
rs1452290392 1013 dbSNP
rs1011751438 1018 dbSNP
rs1262640134 1028 dbSNP
rs1020499802 1032 dbSNP
rs1217493984 1035 dbSNP
rs370849990 1036 dbSNP
rs1244923646 1039 dbSNP
rs1325703394 1043 dbSNP
rs1019106093 1048 dbSNP
rs966240468 1055 dbSNP
rs1189052046 1062 dbSNP
rs375253984 1063 dbSNP
rs774341580 1064 dbSNP
rs1166994241 1065 dbSNP
rs1036075026 1066 dbSNP
rs958745057 1068 dbSNP
rs1474874100 1075 dbSNP
rs1388747436 1077 dbSNP
rs1326089251 1078 dbSNP
rs1450658420 1082 dbSNP
rs764903541 1082 dbSNP
rs1208121539 1083 dbSNP
rs991926419 1085 dbSNP
rs1195517051 1087 dbSNP
rs2096 1088 dbSNP
rs931427229 1094 dbSNP
rs984579660 1097 dbSNP
rs1226411135 1116 dbSNP
rs183672980 1117 dbSNP
rs948504573 1130 dbSNP
rs1357077136 1132 dbSNP
rs567043052 1138 dbSNP
rs1037488867 1142 dbSNP
rs1360456381 1146 dbSNP
rs1334210786 1150 dbSNP
rs907721614 1153 dbSNP
rs907031933 1156 dbSNP
rs371347856 1167 dbSNP
rs934515682 1177 dbSNP
rs1385177095 1195 dbSNP
rs767107303 1209 dbSNP
rs1040281781 1211 dbSNP
rs1474059355 1214 dbSNP
rs1238164369 1215 dbSNP
rs1181147474 1223 dbSNP
rs1287637332 1232 dbSNP
rs1468010850 1235 dbSNP
rs893076000 1247 dbSNP
rs1342679387 1248 dbSNP
rs1288873988 1257 dbSNP
rs1249620720 1258 dbSNP
rs901787317 1261 dbSNP
rs1381221292 1269 dbSNP
rs1284297402 1273 dbSNP
rs1408643347 1277 dbSNP
rs1348244220 1282 dbSNP
rs1309411706 1286 dbSNP
rs1429988560 1289 dbSNP
rs1365423299 1291 dbSNP
rs1463379926 1293 dbSNP
rs931649255 1295 dbSNP
rs1407623157 1299 dbSNP
rs1010826231 1300 dbSNP
rs1183246743 1300 dbSNP
rs1245960928 1300 dbSNP
rs1254050640 1300 dbSNP
rs1471613592 1300 dbSNP
rs553596346 1300 dbSNP
rs1191951596 1303 dbSNP
rs1022304932 1304 dbSNP
rs1323459209 1305 dbSNP
rs535895482 1306 dbSNP
rs892879522 1307 dbSNP
rs1160988524 1308 dbSNP
rs1007641187 1309 dbSNP
rs61105101 1314 dbSNP
rs905712152 1315 dbSNP
rs1160598245 1320 dbSNP
rs1391212114 1321 dbSNP
rs1292169154 1326 dbSNP
rs190481439 1338 dbSNP
rs138558226 1339 dbSNP
rs1320538788 1340 dbSNP
rs538050302 1341 dbSNP
rs1414332649 1346 dbSNP
rs1026544442 1347 dbSNP
rs1480243437 1356 dbSNP
rs1003095149 1365 dbSNP
rs750012669 1366 dbSNP
rs182303418 1371 dbSNP
rs1247055348 1372 dbSNP
rs1208106420 1381 dbSNP
rs1291569317 1383 dbSNP
rs1269531763 1384 dbSNP
rs1334299028 1385 dbSNP
rs1311284037 1395 dbSNP
rs1221309863 1396 dbSNP
rs1228859485 1397 dbSNP
rs952277415 1406 dbSNP
rs760407005 1415 dbSNP
rs1321331403 1416 dbSNP
rs796918310 1420 dbSNP
rs1465546914 1430 dbSNP
rs1027433442 1437 dbSNP
rs578174129 1443 dbSNP
rs1178573655 1444 dbSNP
rs952764338 1445 dbSNP
rs1425661131 1449 dbSNP
rs540655288 1457 dbSNP
rs758027597 1458 dbSNP
rs981194711 1462 dbSNP
rs982832223 1463 dbSNP
rs2239929 1467 dbSNP
rs1256148832 1473 dbSNP
rs1208816601 1475 dbSNP
rs1472637521 1475 dbSNP
rs1183465937 1480 dbSNP
rs1253735253 1492 dbSNP
rs879744745 1493 dbSNP
rs1211846594 1505 dbSNP
rs753126865 1506 dbSNP
rs1297351356 1509 dbSNP
rs940514953 1511 dbSNP
rs976345639 1512 dbSNP
rs1452075516 1515 dbSNP
rs1395940682 1522 dbSNP
rs923211839 1534 dbSNP
rs1158393409 1543 dbSNP
rs574193116 1557 dbSNP
rs1466792283 1564 dbSNP
rs1370139444 1569 dbSNP
rs1167763055 1583 dbSNP
rs1416336044 1588 dbSNP
rs1427509009 1591 dbSNP
rs1052888078 1594 dbSNP
rs1050061698 1595 dbSNP
rs947299964 1597 dbSNP
rs1410576738 1598 dbSNP
rs543185947 1599 dbSNP
rs947098573 1600 dbSNP
rs1041498941 1601 dbSNP
rs1273375700 1602 dbSNP
rs1203467470 1605 dbSNP
rs902961382 1606 dbSNP
rs1344825050 1613 dbSNP
rs1275788465 1614 dbSNP
rs1003021568 1615 dbSNP
rs1256317093 1616 dbSNP
rs1244754241 1618 dbSNP
rs1320424918 1620 dbSNP
rs562838986 1628 dbSNP
rs1036306617 1629 dbSNP
rs894718168 1634 dbSNP
rs1013592789 1639 dbSNP
rs1026947816 1641 dbSNP
rs1350107969 1642 dbSNP
rs1306347717 1649 dbSNP
rs1411886720 1654 dbSNP
rs1008003660 1656 dbSNP
rs1040431361 1663 dbSNP
rs952733191 1673 dbSNP
rs746501114 1690 dbSNP
rs764691774 1691 dbSNP
rs59642848 1696 dbSNP
rs1004198790 1716 dbSNP
rs531563086 1719 dbSNP
rs1366604193 1727 dbSNP
rs1206764944 1737 dbSNP
rs544861181 1740 dbSNP
rs1026492333 1742 dbSNP
rs1483816325 1748 dbSNP
rs965473990 1751 dbSNP
rs1181749308 1753 dbSNP
rs1378502284 1756 dbSNP
rs975934278 1761 dbSNP
rs1479215841 1763 dbSNP
rs952223498 1765 dbSNP
rs1354906528 1770 dbSNP
rs565200247 1773 dbSNP
rs1023660859 1774 dbSNP
rs953284872 1775 dbSNP
rs1286527855 1776 dbSNP
rs752169830 1778 dbSNP
rs1230514534 1780 dbSNP
rs969735024 1781 dbSNP
rs981526234 1789 dbSNP
rs527554616 1802 dbSNP
rs1385946291 1811 dbSNP
rs1394444326 1820 dbSNP
rs1390707757 1822 dbSNP
rs986473865 1825 dbSNP
rs563774950 1827 dbSNP
rs947020075 1828 dbSNP
rs1041426079 1834 dbSNP
rs924353110 1835 dbSNP
rs938444520 1836 dbSNP
rs144340591 1837 dbSNP
rs1206654589 1848 dbSNP
rs1214934147 1851 dbSNP
rs529630828 1852 dbSNP
rs1057265476 1853 dbSNP
rs894638309 1854 dbSNP
rs1195670100 1858 dbSNP
rs1268731796 1859 dbSNP
rs1453677376 1861 dbSNP
rs1330089064 1862 dbSNP
rs1274422624 1863 dbSNP
rs1192193035 1864 dbSNP
rs549893562 1866 dbSNP
rs1450271051 1880 dbSNP
rs943361224 1883 dbSNP
rs1317997394 1894 dbSNP
rs1458301452 1905 dbSNP
rs1040779761 1906 dbSNP
rs901894430 1907 dbSNP
rs768642156 1911 dbSNP
rs1371338231 1912 dbSNP
rs993572919 1915 dbSNP
rs79583660 1917 dbSNP
rs1194601394 1918 dbSNP
rs1047880673 1926 dbSNP
rs781369102 1930 dbSNP
rs888722395 1931 dbSNP
rs1447709672 1933 dbSNP
rs1294029603 1944 dbSNP
rs1198985862 1952 dbSNP
rs186921342 1960 dbSNP
rs1023185276 1961 dbSNP
rs1234703986 1974 dbSNP
rs1438407522 1975 dbSNP
rs906125128 1978 dbSNP
rs1437173305 1983 dbSNP
rs1002511090 1985 dbSNP
rs746034778 1986 dbSNP
rs756377860 1994 dbSNP
rs538464237 2003 dbSNP
rs1004167875 2012 dbSNP
rs1015583475 2013 dbSNP
rs955746094 2016 dbSNP
rs1429449377 2027 dbSNP
rs1388687943 2032 dbSNP
rs988504589 2032 dbSNP
rs1191122418 2035 dbSNP
rs558042868 2053 dbSNP
rs1237025149 2054 dbSNP
rs968554105 2060 dbSNP
rs571975774 2064 dbSNP
rs911102696 2070 dbSNP
rs1211349940 2082 dbSNP
rs943959859 2083 dbSNP
rs571992810 2098 dbSNP
rs1266511900 2099 dbSNP
rs576826198 2120 dbSNP
rs923263513 2126 dbSNP
rs749079269 2139 dbSNP
rs190206259 2140 dbSNP
rs1404837198 2144 dbSNP
rs1030143733 2146 dbSNP
rs768500672 2148 dbSNP
rs986008205 2149 dbSNP
rs1190694736 2152 dbSNP
rs1259985819 2153 dbSNP
rs942186983 2171 dbSNP
rs1427992235 2174 dbSNP
rs1165622599 2181 dbSNP
rs1370100139 2190 dbSNP
rs1258298780 2196 dbSNP
rs1459768453 2197 dbSNP
rs1181822081 2211 dbSNP
rs1164168215 2214 dbSNP
rs774253473 2224 dbSNP
rs561303011 2225 dbSNP
rs1206303730 2237 dbSNP
rs529161686 2247 dbSNP
rs968660780 2250 dbSNP
rs748127719 2257 dbSNP
rs1286748366 2258 dbSNP
rs879837174 2260 dbSNP
rs1293334080 2272 dbSNP
rs1227452486 2273 dbSNP
rs977075721 2280 dbSNP
rs574130140 2281 dbSNP
rs1443303101 2287 dbSNP
rs1035928065 2291 dbSNP
rs1322210337 2297 dbSNP
rs891449771 2303 dbSNP
rs1418721093 2304 dbSNP
rs35384759 2318 dbSNP
rs1009872491 2329 dbSNP
rs542636343 2330 dbSNP
rs1057302230 2333 dbSNP
rs1231925293 2338 dbSNP
rs1470420956 2350 dbSNP
rs771443509 2351 dbSNP
rs1219332449 2352 dbSNP
rs1469746463 2358 dbSNP
rs948882535 2365 dbSNP
rs985276253 2366 dbSNP
rs1330227375 2369 dbSNP
rs1048583981 2384 dbSNP
rs1308625597 2385 dbSNP
rs965279248 2385 dbSNP
rs976646636 2387 dbSNP
rs918534562 2391 dbSNP
rs3179917 2392 dbSNP
rs929261360 2396 dbSNP
rs772802651 2397 dbSNP
rs148418113 2405 dbSNP
rs1259661751 2409 dbSNP
rs1474271004 2411 dbSNP
rs576425432 2416 dbSNP
rs1160189254 2425 dbSNP
rs901202156 2434 dbSNP
rs1412699457 2448 dbSNP
rs1189193380 2449 dbSNP
rs1253476645 2457 dbSNP
rs545209410 2457 dbSNP
rs942104090 2468 dbSNP
rs1463206542 2474 dbSNP
rs1028810531 2482 dbSNP
rs1216118931 2483 dbSNP
rs889899274 2487 dbSNP
rs1311232848 2498 dbSNP
rs760189200 2499 dbSNP
rs371453703 2513 dbSNP
rs766062102 2515 dbSNP
rs1372376377 2521 dbSNP
rs1466195051 2531 dbSNP
rs1304229860 2539 dbSNP
rs1297584666 2552 dbSNP
rs1433517425 2555 dbSNP
rs1364216124 2576 dbSNP
rs1352952907 2581 dbSNP
rs968587878 2600 dbSNP
rs1357602225 2602 dbSNP
rs369091968 2603 dbSNP
rs1231074101 2604 dbSNP
rs1351690680 2609 dbSNP
rs1395445515 2613 dbSNP
rs1225809951 2618 dbSNP
rs375940961 2620 dbSNP
rs527588537 2629 dbSNP
rs992530520 2630 dbSNP
rs550452050 2637 dbSNP
rs7191461 2639 dbSNP
rs181354696 2643 dbSNP
rs1235321508 2653 dbSNP
rs1349130638 2661 dbSNP
rs1274322198 2672 dbSNP
rs984221208 2675 dbSNP
rs1309728569 2681 dbSNP
rs776492029 2684 dbSNP
rs1395458055 2685 dbSNP
rs1377265879 2691 dbSNP
rs940254690 2699 dbSNP
rs3093389 2711 dbSNP
rs901456648 2721 dbSNP
rs529667385 2723 dbSNP
rs549493863 2726 dbSNP
rs569745243 2741 dbSNP
rs1307511278 2743 dbSNP
rs531578780 2749 dbSNP
rs998030307 2757 dbSNP
rs1175443653 2759 dbSNP
rs1010997488 2760 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control PAR-CLIP data was present in GSM545215. RNA binding protein: AGO4. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000395755.1 | 3UTR | GGCCCCGUCUUCCUCCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000395755.1 | 3UTR | GGCCCCGUCUUCCUCCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM545215
Method / RBP PAR-CLIP / AGO4
Cell line / Condition HEK293 / Control
Location of target site ENST00000395755.1 | 3UTR | GGCCCCGUCUUCCUCCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
66 hsa-miR-4260 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074404 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT289774 PER1 period circadian clock 1 2 2
MIRT442576 HOXD9 homeobox D9 2 2
MIRT443878 CNKSR3 CNKSR family member 3 2 2
MIRT449080 XPO6 exportin 6 2 2
MIRT450294 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT461785 FXR2 FMR1 autosomal homolog 2 2 2
MIRT463931 WNT10B Wnt family member 10B 2 2
MIRT464860 UBB ubiquitin B 2 8
MIRT467619 SLC7A5 solute carrier family 7 member 5 2 2
MIRT469649 RAC1 Rac family small GTPase 1 2 2
MIRT473421 MDM4 MDM4, p53 regulator 2 2
MIRT473646 MARCKSL1 MARCKS like 1 2 2
MIRT474213 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT474335 KMT2D lysine methyltransferase 2D 2 2
MIRT474871 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT477440 ELOVL5 ELOVL fatty acid elongase 5 2 2
MIRT478432 DAZAP2 DAZ associated protein 2 2 2
MIRT479851 CCDC6 coiled-coil domain containing 6 2 2
MIRT482507 ACTB actin beta 2 2
MIRT485473 IGF1R insulin like growth factor 1 receptor 2 8
MIRT485670 CCDC64 BICD family like cargo adaptor 1 2 4
MIRT485902 PGPEP1 pyroglutamyl-peptidase I 2 4
MIRT488143 PRRC2B proline rich coiled-coil 2B 2 4
MIRT489455 MSC musculin 2 2
MIRT509568 HIST2H2AB histone cluster 2 H2A family member b 2 4
MIRT513093 DYNAP dynactin associated protein 2 2
MIRT513256 CALM3 calmodulin 3 2 2
MIRT514356 UBBP4 ubiquitin B pseudogene 4 2 6
MIRT522019 PAQR3 progestin and adipoQ receptor family member 3 2 4
MIRT523164 HIST3H3 histone cluster 3 H3 2 2
MIRT523297 HIST1H1B histone cluster 1 H1 family member b 2 2
MIRT524782 BAG5 BCL2 associated athanogene 5 2 2
MIRT530921 SCIN scinderin 2 2
MIRT533302 USP44 ubiquitin specific peptidase 44 2 2
MIRT552782 YIPF4 Yip1 domain family member 4 2 4
MIRT553981 SRPR SRP receptor alpha subunit 2 2
MIRT563126 ZNF215 zinc finger protein 215 2 2
MIRT569025 IL21R interleukin 21 receptor 2 2
MIRT573413 RPL18A ribosomal protein L18a 2 2
MIRT574877 Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 2 3
MIRT607538 GLI2 GLI family zinc finger 2 2 2
MIRT607682 MAPK10 mitogen-activated protein kinase 10 2 3
MIRT623791 GK5 glycerol kinase 5 (putative) 2 2
MIRT628834 FAM151B family with sequence similarity 151 member B 2 2
MIRT635547 LEPREL1 prolyl 3-hydroxylase 2 2 2
MIRT635698 NMNAT2 nicotinamide nucleotide adenylyltransferase 2 2 2
MIRT635906 ARPC1B actin related protein 2/3 complex subunit 1B 2 2
MIRT649985 MSI1 musashi RNA binding protein 1 2 2
MIRT654900 POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) 2 2
MIRT655116 PHF7 PHD finger protein 7 2 2
MIRT658958 DNAJC6 DnaJ heat shock protein family (Hsp40) member C6 2 3
MIRT659665 CDC42EP4 CDC42 effector protein 4 2 2
MIRT668946 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT691164 APOL6 apolipoprotein L6 2 2
MIRT692696 MEAF6 MYST/Esa1 associated factor 6 2 2
MIRT693245 HBS1L HBS1 like translational GTPase 2 2
MIRT695203 SCAMP3 secretory carrier membrane protein 3 2 2
MIRT701957 MINK1 misshapen like kinase 1 2 2
MIRT706802 APOL4 apolipoprotein L4 2 2
MIRT716899 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT717632 HLX H2.0 like homeobox 2 2
MIRT719052 ZNF281 zinc finger protein 281 2 2
MIRT722973 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT723643 RPTN repetin 2 2
MIRT734708 NR3C2 nuclear receptor subfamily 3 group C member 2 4 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4260 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4260 Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-4260 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-4260 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-4260 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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