miRTarBase - #MIRT569136


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pre-miRNA Information
pre-miRNA hsa-mir-3120   
Genomic Coordinates chr1: 172138808 - 172138888
Description Homo sapiens miR-3120 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3120-5p
Sequence 13| CCUGUCUGUGCCUGCUGUACA |33
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 19 1 + 172138838 26449202, 27587585 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26637643 8 COSMIC
COSN31603497 11 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs750386761 8 dbSNP
rs760725207 9 dbSNP
rs766486759 10 dbSNP
rs754055278 12 dbSNP
rs755288536 19 dbSNP
rs754726014 21 dbSNP
Putative Targets

Gene Information
Gene Symbol KATNAL1   
Synonyms -
Description katanin catalytic subunit A1 like 1
Transcript NM_001014380   
Other Transcripts NM_032116   
Expression
Putative miRNA Targets on KATNAL1
3'UTR of KATNAL1
(miRNA target sites are highlighted)		 
>KATNAL1|NM_001014380|3'UTR
   1 ATTTCTGTCAGCTCTTTAATTTCTGGTATTTTTGTTGATAAAATACGAAGAAATTCCTGCAATTTTTAAAAAACAAGTTT
  81 GGAATTTTTTTCAGTGGAGTGGTTTTCGCTTAAAGGAAAAAAAAATCTAAAACTGCGAAGAATACTAAATGTAGTTGAGA
 161 AATAATTGATGGCGAGAGTTTGCTAGTCTCCCTCCCCGGCTTTGTGCTGGTATTCCACGTATTCCTGCATTAATATTGCA
 241 CACCCAAACCAGTCTATCAGGGAGGCTGAAGCAAGGGCGCAGTGTGATATTTTAGGAATACAGAAGATTTAGAAATACCC
 321 CTATTTCTCATTTGCAGTTTTTTTTTCCAATTCTGTGCTCTGTCAACATGAGGGACCTATCTATGTATGTTGACTTTTAA
 401 CATCAAAATTGGATTTGTGTCAAACATTCATTGTTAAGAGAAGAATGACAGTATATTTTGGAGGAAATAATGAATTTACT
 481 AATTAAACCTTTAGAATTTATGACTTACTGTTAGAGTCTGTCATATGGTTAGAATTTTTACTTCCGCTACCCCTGCCATT
 561 TCTTCTGCTAGCTACTTCATAATATCTTGAGCTTTACTGAGGAATATTCTCACGCTCTGTGGTATTTGAATCATTTTGCC
 641 AGGTCATTTCTCTGTCTTTAGTATTTTTTGCTGGTGCTTCTTACATTTAATATGGAAAGGTGGGAAGAATATTACTGCAT
 721 TAGATGTAATTCTTCATTCTAGACTTCCAAGTTTGTTTTCACTTTTTTGTGTGTGCGTGAAGGAGTCTGTGTCACCCAGG
 801 CTGTGTAGTGCAGTGGTTGATCTTGGCTCACTGCAACCTCTGCCTCCTAGATTCAAGCAATTCTCCTGTCTCAGCCTCCC
 881 AAGTAGCTGGGATTACAGGTGCGCACCACCATGCCTGGCTGTGTTTTCACTTTTCTTTCAACATGTTCAACCAGATATAT
 961 AGCCATTATTTTTCTCAGCTCCAGCATTGTTTGATTTTTCTTGAGTTTGATTTTAGTATTTGAGATAAATACTTTTACAT
1041 TCTAAACAAGTCCACTCTCTGTGGCTAACGCAAAACAAATGAAATCTTTATTGTTTTCCAAACAGCTAGTTTAACAAAAC
1121 AGCATCATACATAGTGAATGATGTTCATTGGAAAATTCTAAAATTTGTCCTTGTCTAGGTTGAGAACTTTTACACACACT
1201 AAGATAAAGATAGAAATCTGACATGCTCACTCAATTCAGCAGGAATTACACATTAGAAAGAAGCCAGAAAAATAAATGGC
1281 ATATATCCAATCACAAGTAAATGATCCTGGCGTTAGTTTTTATGATTACATGTGTCTCATTAGGCAATTTATGCTTTAAT
1361 GGTCAAGCTTTTAAAAATTTGTATTTGATAACATCCTGAATTCTCAGTTTCGAATAGTGCCTACTGGTTTAAAACTAAAA
1441 ATAATACAGCTTTTTGGACATTTAACCAAGATACTAAGAAGGTTTTTTTTAAAAAAAGAGATTTGATTATTTTTCCCTGC
1521 TAAAAACTGTAAATGCCTTATGTTCTTTTCAGATAACTTAAGTCTGACCTAAACTCCAGTATTCATCTGATGCTGTAAAT
1601 TGCCCTTCTTTCTGAGACACAGATTATAAGATGCCAGATCATAAGACATCATGATTTTATTGTAATTGAATTCTTCCTAA
1681 AAATTGAGAGGTTTCCTTTTATTAACTTTTAAAATAAAGAAATAAGTAGTTTCATTACGATTATTTTGCAAACTATTGCC
1761 AGTCAGAAATGCACTTTTTTTTTCCCTGAAGTTTTAGGAGCCGTCACTAAAACATTAGTCTTGTGATTGTTAAAACTTGT
1841 TTGTAATGGGTTGGTGCAAAAGTAATTGTGGTTTTTCCATTACTTTCAATGGCAAAAACCGCAATTACTTTTGCACCAGC
1921 CTAACAATAGTTGATTAGTTAGACCTTTTCTGGGTTTTGTATTGATTATCTTGGTGTGCATTTAATTATTTTTCTGAATT
2001 CTTCATGGATAATGACATAGTAATTGTGATTCTTTTAATACCAGTTAAGCAGTATTTGGCAACTTAAACTTCCTGGGAGC
2081 CTAACTTTACTATGTTAAGTGAGTCAGGTGTGCTTTTTATTTCCCTTGTTTCTCATTTTGCCCTGTCAGTGGATGGTAGA
2161 TGCTTTGTATATCTTAAATCCCTTAAAGGATCTTAAAGACATCCCTCAGGTGTTCTATTTAACTTTTATTTTATTTTATT
2241 TTATTTATTTATTTATTTTGAGACTGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGC
2321 AACTTCTGCCTCCCAGGTTCAAGCCATTCTCCTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGTTGCCGCCACACCCGG
2401 CTTATTTTTTTGTATTTTTAGTAGAGGCAGAGTTTCACCATGTTGGCCAGGCTAGTCTCGAACTCCTGACCTCAGATGAT
2481 CCGCCCACATTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGATCCACCGCACCTGGCCCTAACTTTTAATATACAACAC
2561 ACACACACACACACACACACACACACACACACACACACACACACACACACACACTATTTCAGAAGACAGTGTGTTGCCTT
2641 ACCCAGAATGAGTGCTAGGATTACAGGCGTGAGACAGACACACATACACACACATACACACACACAGAGTCTTTATTGCA
2721 GAAGACAGTGTGTTGCCTTATAGGCGTGAGACACACACACACACACACACACACACACACACACACACAGTCTTTATTGC
2801 AGAAGACAGTGTGTTGCCTTACCAGAATGAGTGCTTGGATTACAGGCGTGAGCCACTGTGCCCAGCCCTAACTTTTAATG
2881 TACATCACACACACACTCACACTCACATACACACACACACACACACTCTGACTGTCTTTATTGCAGAAGACAGTGTGTTG
2961 CCTTACCCAGAATGAGATTGAATTGTTTTGCTTCGTTTTGTTTTGTTATTCAGTGTTGCGGTAGCAGATGCATTATCAAA
3041 GGAAAAATATTTGGCTCCTTTAATTCCTCTGAAAACATGAGTATTTTGAGTTCTGCAGCACAATGACTGTAGGACTAAGC
3121 TAAGTCTGCTTTGCAGATATCTGATCAGATAGTCCCTTCATTCTGTAGACGTGTATTGGTTGGTCCAAGACACAGTGAGT
3201 AGGAGCTCTGTGGACCAAGACAAAGCTGGACTAGAGAGTACAGTTCAAACTTGGCAGTTTCTCTAACGACTCTGTATAGC
3281 TTCTGGCTTCTACTACTGAAACAAGAGTTTAGATCACTGATGGAGAGGCATAGTAATCTGTTTGTGCTTTGGAAAAATAT
3361 ATAAAAGTTTTTTTCCCCTATTTTTTGCACTTTAAATCTGTTTTGAAATTAGAACTGATATACATTTATTTGAATAATGT
3441 GTAACTATTATGGATCTATTTTAATGAACAATTTTTACCATTTCCCAAGCTGCCTGTTTATTATAAGCATGACATGTTTA
3521 CTATAAACCTTTTGCCCCCATAATTTCTTTTTTTAAAGGAAATTAATATTAGTAAAATAAACACCTCTTTAATGGAAGCT
3601 GCAACCTTCTAGTGATCCAAGTAGACAATAGATGGTGGCATCACAGACTTTATCTACACACTTTCGGGTCTGACCACTAC
3681 CTCCCACAATACCTAGCCATTTTGGAAGGGGAAAACATGCGGTGGTCTAGCTGTATAGCTCAGGGCTTAATTTCAGCTTC
3761 TGAGATTGTGATGTCATATTTCACTCTCAAAACATAGGCTGAAAGCACGAATTACTCAAAAAGTAAGCAAACCAATACCT
3841 GGTGAATCTATGGACAGTCATACACATACATCAGGGGAAAATGTGTGTGTACAACCCAAATTTACAGTATGATTGTCATT
3921 CTTTGACTTTGTTTTGTATAGCCTGACTCTGTTGAACATGAAATTATTAGTACTCTAGGTTTTGGACAGCTTGAGTTCAT
4001 TTGAATTCCTTCCTTAGGAATAAGTTTTTATATACACTGCTAAATGTGTGATGAGAATCATAAAACACTAACCAGCTGAG
4081 GTAGCTGTGATTCACTTTCCCCCCACCCTAACTTGAGATAAAATGAAGGACTAGGCAAGTATTTCATGTTGTGTGAGTGG
4161 ACTTCGGTTCCTTCAGTATTGTCTAGGTTATTGAGTCTTTCTTTGCCTAATAGTGGATTCCCACTCTTAAGATAACTTTT
4241 ATTAGTGATAAATCAGTTTAGGGTATATTCTGTATGACAGGCATAAAATGTTAAGGGTGAATGCTGGCCTTTTCCAAGAA
4321 AAGGCCACCTTAACTTGTATGAGGAAAAAATCCTAACTATTCTCTTTTTTGTATCTTTTTTTCCGTAACTGTTTTGATTG
4401 TATATTTTAAAGAAACCACTTAATTTGTGATGCACGTAATATTTGTGTGAACCTGAGAATATGTCACAATAGGAAAAAGC
4481 AGAAATTATACTTAGGGGACATGTTAGGGGGGTAAAAATATTTAAGCCTCGAATGTTTTACTGTCATCTCCACTAACTAT
4561 TTTTACAGAAAAAGCTAAAAACTCTGTTGTAATTATTGTAAGTTTACTTATTTATACTTTTAAATTAGGCTTTTCATACT
4641 TAAATTTTTTTGACATTTGCTTTTAATATTTGTTTCTTAATGTGGAAATTGTGTATTTTAATAATCAAATTATTAGGATA
4721 ATAGATATATTTTTAAACATTCACCTCATTAACAAATAGATCTTTGAATTTTTATTAGGTTTTTTGGCTCCAGACAACTG
4801 TTTAGCTTTAATGATATTTCTAAATTCCCAGTGACTTATTAATAAAAACAGGAAAAATATTTAGGTAATGTCATAAAATT
4881 TATTTTACCTTTCTCATTTTCTGAGAAAATAAATGAAAAAAACCCTAGATATTGCTTTATTACCAACAGTGTGTAGGTTT
4961 TTGTACATATGGAAATTTGACACAAAAAAATAGGGAATTTGTATAGAGAAGTTTCCCTCTTATAAAAGGACTCCCATTTG
5041 ATTGTTCGAAACTATAAAATGCACTTTTACTTTACCATATCTGAAATGACAAAATATCGCCCTTTGGAAAACCTGACTCT
5121 TTGCACGTGTAATTCCCAGAGTCTACCTCAGTTAACCAGGCTTAGTTTTAGGCAGGAATGAATTGAATTAAATTCAGTTC
5201 ATCATCTATGCAGATTTGTTTCTTTTAAGCACATCCTTCCCTCCTGCTGTTGCCCTCCTCCCATTAACTTTTCTTTTTAA
5281 TCTTGAAATTGTTTAAAATATTCCATCTTTCTTTCTCTAGCAAAGTGTTTGTATTCCAAATAAGGCCTCTGTGAAATGTC
5361 TGAATTACTTTTCCCGTCTTTGTTATGGTCAGCTTCATTATTTGGATGTATTGCATTCAAAGCAGCAGTTCCAAACATAA
5441 CACACATCTATTTTCTTAGAGTTTTGTAAATACAAACTAACCTGATGACATTAAAAATTGTGGATCCTACATGTTCCTAT
5521 GTTCATTCTCTAAAAACCTGAGTAACTTTATGAAAACACACAAACCTGGAAAAACATCACATTTTTGTCACATTTTTACT
5601 GACAAATGTATATTCATATGATGGTACGGCAGCAGGGAGTGGCCCCCAGTTAACATGGCTGTGAGTGGACACAGTGTCTC
5681 GCAGGATCACTGCATGTTATGATGGCTTGTAAGTGCGTTGTTAAGACTTTTGTTTCAGTGTTTGTCTCCCAGTATTTGAA
5761 CCTAATTTAAAGAAAAAGACGTTTCCAAGTTGTATTTATTAAATGTGTTTTTCCTTACCTTTTGTGCTGCTACTTTGCTA
5841 ATCTCATTAGCTTAGCTGTGTTTGTGCATAGGTTATATTTGGTAATAAATTTATAGAGTGTTGGTTGTCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' acAUGU-CGU-CCGUGUCUGUcc 5'
            |||| ||: |  |||||||  
Target 5' atTACAGGCGTGAGACAGACAca 3'
 2660 - 2682 139.00 -17.52
2 
miRNA  3' acaUGUCGUCCGUGUCUGUCc 5'
             ||| ||  |||| |||| 
Target 5' cacACA-CACACACACACAGt 3'
 2772 - 2791 129.00 -8.60
3 
miRNA  3' acAUGUC-GU--CCGUGUCUGUCc 5'
            |:||| :|   |  ||||:|| 
Target 5' ttTGCAGATATCTGATCAGATAGt 3'
 3130 - 3153 129.00 -10.56
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31590629 19 COSMIC
COSN30472968 37 COSMIC
COSN8407361 47 COSMIC
COSN15667430 85 COSMIC
COSN508819 86 COSMIC
COSN30102286 88 COSMIC
COSN16673734 99 COSMIC
COSN32065290 321 COSMIC
COSN17011863 345 COSMIC
COSN7398181 808 COSMIC
COSN24834893 1069 COSMIC
COSN6622164 1566 COSMIC
COSN31960895 2051 COSMIC
COSN15091613 2222 COSMIC
COSN25959868 2236 COSMIC
COSN6622163 2460 COSMIC
COSN6622162 2594 COSMIC
COSN32063623 2789 COSMIC
COSN20110530 2892 COSMIC
COSN19680543 2897 COSMIC
COSN20110534 2902 COSMIC
COSN32064317 2903 COSMIC
COSN20110533 2904 COSMIC
COSN20515393 2908 COSMIC
COSN20584491 2974 COSMIC
COSN8778886 3595 COSMIC
COSN5723517 3639 COSMIC
COSN17181611 3646 COSMIC
COSN16446765 3692 COSMIC
COSN17814207 3741 COSMIC
COSN5336628 3852 COSMIC
COSN20110529 4110 COSMIC
COSN26271647 4370 COSMIC
COSN15660991 4391 COSMIC
COSN32057935 4473 COSMIC
COSN1605757 4718 COSMIC
COSN30020415 4844 COSMIC
COSN28313148 4915 COSMIC
COSN24819871 5100 COSMIC
COSN25377616 5113 COSMIC
COSN1157411 5172 COSMIC
COSN6622161 5475 COSMIC
COSN20929552 5717 COSMIC
rs17074418 4822 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1383934561 3 dbSNP
rs914781916 5 dbSNP
rs941074525 11 dbSNP
rs1302279322 14 dbSNP
rs1226416868 17 dbSNP
rs561690192 18 dbSNP
rs1402630859 24 dbSNP
rs1171968474 26 dbSNP
rs61435763 28 dbSNP
rs765841328 33 dbSNP
rs745975629 34 dbSNP
rs937635608 34 dbSNP
rs1245892829 41 dbSNP
rs760140811 46 dbSNP
rs780389913 47 dbSNP
rs1392319746 50 dbSNP
rs1261782835 58 dbSNP
rs879814029 58 dbSNP
rs981692405 71 dbSNP
rs1370343349 77 dbSNP
rs939012788 83 dbSNP
rs1196197898 84 dbSNP
rs927662235 87 dbSNP
rs867209332 91 dbSNP
rs1164005786 92 dbSNP
rs371093818 92 dbSNP
rs1366704901 94 dbSNP
rs918551411 96 dbSNP
rs977957671 104 dbSNP
rs945330657 107 dbSNP
rs1433210247 114 dbSNP
rs1016087773 117 dbSNP
rs192823702 121 dbSNP
rs1311027332 122 dbSNP
rs1029344622 124 dbSNP
rs1240364306 126 dbSNP
rs1260828204 126 dbSNP
rs1327818586 127 dbSNP
rs1206441557 128 dbSNP
rs150008908 136 dbSNP
rs989333318 137 dbSNP
rs546000878 140 dbSNP
rs997414472 144 dbSNP
rs1198313871 149 dbSNP
rs367586745 160 dbSNP
rs1420854610 162 dbSNP
rs748752160 167 dbSNP
rs901518051 170 dbSNP
rs112246249 173 dbSNP
rs954675319 174 dbSNP
rs777573947 177 dbSNP
rs557571197 183 dbSNP
rs1026337230 192 dbSNP
rs1407204285 196 dbSNP
rs187969037 197 dbSNP
rs139592620 198 dbSNP
rs182453378 200 dbSNP
rs1306826953 207 dbSNP
rs535387148 210 dbSNP
rs1226098632 212 dbSNP
rs1264453913 216 dbSNP
rs566360133 218 dbSNP
rs546647384 219 dbSNP
rs569295495 223 dbSNP
rs1470341818 226 dbSNP
rs1208961573 239 dbSNP
rs1254051131 243 dbSNP
rs554114600 256 dbSNP
rs150980382 260 dbSNP
rs939125816 264 dbSNP
rs1471567794 274 dbSNP
rs906182878 277 dbSNP
rs748014178 278 dbSNP
rs945250824 279 dbSNP
rs918628343 286 dbSNP
rs1356642282 299 dbSNP
rs1462759854 300 dbSNP
rs1440621484 302 dbSNP
rs45507700 320 dbSNP
rs34240895 322 dbSNP
rs941480631 322 dbSNP
rs1407262390 332 dbSNP
rs1284702720 336 dbSNP
rs565395100 337 dbSNP
rs1351673972 338 dbSNP
rs1218309652 340 dbSNP
rs577834825 346 dbSNP
rs561605212 347 dbSNP
rs71747871 347 dbSNP
rs953347851 347 dbSNP
rs1238089122 349 dbSNP
rs1028793350 369 dbSNP
rs1224569786 374 dbSNP
rs1269738298 379 dbSNP
rs910413049 383 dbSNP
rs145313021 384 dbSNP
rs1315787298 385 dbSNP
rs987530506 390 dbSNP
rs1429331718 391 dbSNP
rs1448029430 401 dbSNP
rs1168393248 402 dbSNP
rs1427135458 412 dbSNP
rs752389513 416 dbSNP
rs754910691 419 dbSNP
rs1435203177 423 dbSNP
rs1291285952 425 dbSNP
rs1019989607 430 dbSNP
rs1228658031 433 dbSNP
rs1296630809 445 dbSNP
rs1339762299 448 dbSNP
rs1009888423 450 dbSNP
rs1401582100 451 dbSNP
rs751545793 453 dbSNP
rs972094090 456 dbSNP
rs528455767 466 dbSNP
rs892783116 483 dbSNP
rs1450946866 487 dbSNP
rs1156508351 490 dbSNP
rs1243885303 492 dbSNP
rs1426131571 497 dbSNP
rs1486343457 499 dbSNP
rs1188110234 510 dbSNP
rs1033186184 514 dbSNP
rs1446753389 523 dbSNP
rs1164593373 528 dbSNP
rs879130141 545 dbSNP
rs559464100 546 dbSNP
rs965053201 549 dbSNP
rs1162149874 550 dbSNP
rs1016507786 555 dbSNP
rs906027422 562 dbSNP
rs1045895855 566 dbSNP
rs1471775061 574 dbSNP
rs139791391 575 dbSNP
rs7328946 578 dbSNP
rs897400816 579 dbSNP
rs1286456044 581 dbSNP
rs529599976 582 dbSNP
rs894629298 585 dbSNP
rs1037019908 586 dbSNP
rs1246485019 590 dbSNP
rs868539183 595 dbSNP
rs941386196 602 dbSNP
rs909855424 603 dbSNP
rs371743453 604 dbSNP
rs1237242513 605 dbSNP
rs758485779 613 dbSNP
rs55836900 614 dbSNP
rs765508121 617 dbSNP
rs45484093 618 dbSNP
rs945055768 620 dbSNP
rs191377082 629 dbSNP
rs1339598097 634 dbSNP
rs1445772708 637 dbSNP
rs555209704 638 dbSNP
rs1351197541 645 dbSNP
rs988696464 646 dbSNP
rs1272395198 659 dbSNP
rs943286771 667 dbSNP
rs1032638073 670 dbSNP
rs1201203480 674 dbSNP
rs1432080955 676 dbSNP
rs188015132 679 dbSNP
rs1440986200 684 dbSNP
rs910359048 685 dbSNP
rs969828022 688 dbSNP
rs1472546415 690 dbSNP
rs1051606817 691 dbSNP
rs933353912 693 dbSNP
rs1481224770 726 dbSNP
rs572727210 743 dbSNP
rs897308136 757 dbSNP
rs147421618 759 dbSNP
rs1403053993 761 dbSNP
rs919346771 762 dbSNP
rs550431378 776 dbSNP
rs539088523 777 dbSNP
rs1260849259 779 dbSNP
rs1005724924 781 dbSNP
rs1286558083 783 dbSNP
rs963397562 791 dbSNP
rs909227861 800 dbSNP
rs1201301734 808 dbSNP
rs1490905911 810 dbSNP
rs1234249170 821 dbSNP
rs1274429762 822 dbSNP
rs1343125325 823 dbSNP
rs1197991209 828 dbSNP
rs888449084 830 dbSNP
rs183287312 837 dbSNP
rs1220969882 838 dbSNP
rs1320047077 854 dbSNP
rs1249021350 857 dbSNP
rs142701940 859 dbSNP
rs1199145887 860 dbSNP
rs1376772889 865 dbSNP
rs1035784527 869 dbSNP
rs536811774 877 dbSNP
rs1215738755 878 dbSNP
rs1317828958 879 dbSNP
rs760901574 882 dbSNP
rs531634376 884 dbSNP
rs922690650 887 dbSNP
rs1002997691 889 dbSNP
rs967555783 890 dbSNP
rs776081279 894 dbSNP
rs1041127494 902 dbSNP
rs191656009 903 dbSNP
rs1367547099 911 dbSNP
rs913033015 918 dbSNP
rs1322974037 928 dbSNP
rs1329602855 941 dbSNP
rs1345784077 945 dbSNP
rs868273915 951 dbSNP
rs988727612 952 dbSNP
rs1292529377 957 dbSNP
rs1294511657 958 dbSNP
rs1489085603 965 dbSNP
rs893451446 976 dbSNP
rs1053876700 978 dbSNP
rs1007448586 981 dbSNP
rs1433829773 994 dbSNP
rs548389861 995 dbSNP
rs1051722352 1002 dbSNP
rs979781554 1015 dbSNP
rs186795070 1016 dbSNP
rs1328947962 1024 dbSNP
rs933131597 1025 dbSNP
rs1024078913 1029 dbSNP
rs3825533 1035 dbSNP
rs1036429931 1036 dbSNP
rs568265498 1042 dbSNP
rs866120580 1046 dbSNP
rs1433421591 1051 dbSNP
rs868634684 1057 dbSNP
rs1317607209 1059 dbSNP
rs909184192 1069 dbSNP
rs1015676716 1070 dbSNP
rs1264385401 1072 dbSNP
rs1426167971 1075 dbSNP
rs552283762 1084 dbSNP
rs1190869160 1090 dbSNP
rs991454885 1093 dbSNP
rs772835112 1094 dbSNP
rs958907227 1098 dbSNP
rs769621032 1101 dbSNP
rs1464160364 1106 dbSNP
rs981689896 1109 dbSNP
rs1257979316 1116 dbSNP
rs1424347042 1117 dbSNP
rs532552098 1147 dbSNP
rs1186698927 1148 dbSNP
rs1366799552 1151 dbSNP
rs1159982117 1167 dbSNP
rs1234731718 1167 dbSNP
rs1458833725 1167 dbSNP
rs1199284132 1173 dbSNP
rs563731425 1177 dbSNP
rs888690106 1184 dbSNP
rs148598743 1187 dbSNP
rs1311136513 1190 dbSNP
rs1338038695 1194 dbSNP
rs967556126 1196 dbSNP
rs758651918 1209 dbSNP
rs1020892595 1210 dbSNP
rs1009289548 1226 dbSNP
rs958035795 1234 dbSNP
rs143978228 1241 dbSNP
rs1206379832 1243 dbSNP
rs996876143 1249 dbSNP
rs183006904 1252 dbSNP
rs1199815919 1264 dbSNP
rs1254066321 1265 dbSNP
rs1375058251 1266 dbSNP
rs1473528987 1273 dbSNP
rs1183035709 1280 dbSNP
rs1041156535 1289 dbSNP
rs1471751906 1299 dbSNP
rs1178423889 1307 dbSNP
rs1360122238 1309 dbSNP
rs1465903344 1309 dbSNP
rs888818197 1311 dbSNP
rs758519075 1312 dbSNP
rs997458087 1315 dbSNP
rs527799036 1322 dbSNP
rs1288458270 1323 dbSNP
rs1445315272 1329 dbSNP
rs897633692 1330 dbSNP
rs1036615922 1332 dbSNP
rs1338572536 1337 dbSNP
rs1312399084 1339 dbSNP
rs1232349735 1344 dbSNP
rs149481473 1345 dbSNP
rs780668159 1347 dbSNP
rs1205734983 1350 dbSNP
rs935947336 1351 dbSNP
rs1055844303 1354 dbSNP
rs937330486 1361 dbSNP
rs1426217824 1364 dbSNP
rs925875818 1366 dbSNP
rs138291048 1368 dbSNP
rs980406033 1376 dbSNP
rs879208278 1382 dbSNP
rs1431672484 1383 dbSNP
rs1410348661 1387 dbSNP
rs928664786 1392 dbSNP
rs559250241 1398 dbSNP
rs754821874 1407 dbSNP
rs539003046 1411 dbSNP
rs576443047 1412 dbSNP
rs1294772667 1421 dbSNP
rs1367915944 1431 dbSNP
rs1218256966 1433 dbSNP
rs981637394 1441 dbSNP
rs992539298 1444 dbSNP
rs961110319 1458 dbSNP
rs150449930 1481 dbSNP
rs984287394 1482 dbSNP
rs1223914505 1483 dbSNP
rs952967085 1486 dbSNP
rs913365778 1489 dbSNP
rs780042210 1490 dbSNP
rs1019621890 1491 dbSNP
rs1168340868 1491 dbSNP
rs45561234 1491 dbSNP
rs901173669 1491 dbSNP
rs1208392712 1494 dbSNP
rs1318359437 1498 dbSNP
rs200560932 1498 dbSNP
rs892539074 1499 dbSNP
rs1052966291 1500 dbSNP
rs1349906181 1502 dbSNP
rs1286238711 1506 dbSNP
rs1032087159 1512 dbSNP
rs1366899002 1515 dbSNP
rs904328271 1517 dbSNP
rs985905582 1521 dbSNP
rs1229909117 1523 dbSNP
rs1290722960 1528 dbSNP
rs1321132706 1529 dbSNP
rs1396593460 1530 dbSNP
rs1270319414 1540 dbSNP
rs1465512491 1542 dbSNP
rs953005323 1551 dbSNP
rs1300869512 1552 dbSNP
rs1246550287 1562 dbSNP
rs1455113525 1564 dbSNP
rs9506275 1566 dbSNP
rs1159526113 1571 dbSNP
rs762252008 1574 dbSNP
rs1182883481 1581 dbSNP
rs997405695 1585 dbSNP
rs1378622539 1605 dbSNP
rs765274843 1606 dbSNP
rs1185487622 1610 dbSNP
rs1162163227 1611 dbSNP
rs1424920723 1612 dbSNP
rs1457420589 1619 dbSNP
rs897741921 1623 dbSNP
rs548069871 1626 dbSNP
rs1450139056 1629 dbSNP
rs1180510586 1631 dbSNP
rs1378334855 1632 dbSNP
rs1006462375 1636 dbSNP
rs534863618 1641 dbSNP
rs1290258615 1648 dbSNP
rs1330138362 1666 dbSNP
rs140260324 1673 dbSNP
rs1282636233 1683 dbSNP
rs1444432275 1685 dbSNP
rs1211246052 1692 dbSNP
rs565787864 1699 dbSNP
rs191599525 1700 dbSNP
rs1472076850 1719 dbSNP
rs887650703 1722 dbSNP
rs1185218644 1723 dbSNP
rs754116872 1723 dbSNP
rs1472729502 1724 dbSNP
rs532513744 1734 dbSNP
rs563694722 1738 dbSNP
rs1045716248 1739 dbSNP
rs761108228 1740 dbSNP
rs913473219 1743 dbSNP
rs952918016 1748 dbSNP
rs990451974 1749 dbSNP
rs936153221 1750 dbSNP
rs775715731 1756 dbSNP
rs1347391801 1757 dbSNP
rs1278329808 1774 dbSNP
rs965609802 1774 dbSNP
rs985854672 1783 dbSNP
rs1009555033 1784 dbSNP
rs1019654444 1784 dbSNP
rs1483066008 1786 dbSNP
rs1180813956 1787 dbSNP
rs9508678 1794 dbSNP
rs185424447 1802 dbSNP
rs561474471 1803 dbSNP
rs1001325392 1810 dbSNP
rs1165558587 1812 dbSNP
rs1170338948 1814 dbSNP
rs1371072746 1815 dbSNP
rs180966784 1817 dbSNP
rs760098685 1819 dbSNP
rs772890090 1820 dbSNP
rs77772670 1821 dbSNP
rs565400634 1826 dbSNP
rs1437392053 1830 dbSNP
rs1274660443 1836 dbSNP
rs1006162527 1839 dbSNP
rs1012871595 1844 dbSNP
rs951860066 1850 dbSNP
rs1247780569 1851 dbSNP
rs1452998103 1852 dbSNP
rs1199083029 1853 dbSNP
rs895724561 1855 dbSNP
rs1452407027 1860 dbSNP
rs1430782522 1861 dbSNP
rs1424859426 1866 dbSNP
rs1056953318 1871 dbSNP
rs1193323516 1884 dbSNP
rs939702741 1888 dbSNP
rs1034160810 1889 dbSNP
rs1001542683 1900 dbSNP
rs931051608 1901 dbSNP
rs373898740 1904 dbSNP
rs1045832049 1907 dbSNP
rs188065499 1915 dbSNP
rs1437813229 1916 dbSNP
rs1298760546 1919 dbSNP
rs891824311 1925 dbSNP
rs1229612023 1927 dbSNP
rs1055097033 1928 dbSNP
rs1357769376 1929 dbSNP
rs912837846 1930 dbSNP
rs1272227825 1932 dbSNP
rs1277347511 1933 dbSNP
rs988364649 1934 dbSNP
rs1190325272 1937 dbSNP
rs748668349 1943 dbSNP
rs1325721984 1944 dbSNP
rs1427877496 1959 dbSNP
rs1190848681 1961 dbSNP
rs956701484 1964 dbSNP
rs936284797 1967 dbSNP
rs911364429 1970 dbSNP
rs1164303460 1980 dbSNP
rs556521645 1983 dbSNP
rs1291843117 1986 dbSNP
rs548682204 1992 dbSNP
rs543052432 1993 dbSNP
rs1170444672 1998 dbSNP
rs1381027821 2001 dbSNP
rs969870079 2002 dbSNP
rs931678279 2004 dbSNP
rs1477018073 2007 dbSNP
rs1244933710 2008 dbSNP
rs113998014 2014 dbSNP
rs554650603 2015 dbSNP
rs1210158129 2020 dbSNP
rs1432228602 2020 dbSNP
rs961999681 2020 dbSNP
rs1264727538 2026 dbSNP
rs895623630 2030 dbSNP
rs1056984139 2032 dbSNP
rs1004046711 2062 dbSNP
rs1187376020 2069 dbSNP
rs886811932 2073 dbSNP
rs17074420 2075 dbSNP
rs1325487699 2079 dbSNP
rs1363598906 2080 dbSNP
rs17632858 2089 dbSNP
rs920992990 2090 dbSNP
rs1403603502 2092 dbSNP
rs1395906016 2094 dbSNP
rs772042069 2097 dbSNP
rs944203348 2101 dbSNP
rs1229863082 2110 dbSNP
rs1288648615 2128 dbSNP
rs1315964882 2140 dbSNP
rs1236671132 2143 dbSNP
rs912704216 2149 dbSNP
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rs1255499993 2154 dbSNP
rs1240207524 2157 dbSNP
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rs988397222 2167 dbSNP
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rs956941319 2187 dbSNP
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rs930743557 3123 dbSNP
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rs1284848632 3211 dbSNP
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rs1266689512 3280 dbSNP
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rs1200029710 3361 dbSNP
rs78144532 3362 dbSNP
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rs375852811 3494 dbSNP
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rs978384850 3767 dbSNP
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rs1328638639 3778 dbSNP
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rs1438011618 3995 dbSNP
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rs1233014999 4296 dbSNP
rs918156873 4305 dbSNP
rs150505276 4307 dbSNP
rs1056747092 4315 dbSNP
rs935480335 4321 dbSNP
rs764414887 4324 dbSNP
rs114110114 4325 dbSNP
rs1443394974 4327 dbSNP
rs1400198055 4334 dbSNP
rs1054942882 4336 dbSNP
rs937694980 4339 dbSNP
rs193205561 4340 dbSNP
rs1159938617 4342 dbSNP
rs1380319087 4351 dbSNP
rs1315530827 4354 dbSNP
rs977142777 4355 dbSNP
rs78699770 4356 dbSNP
rs536232977 4360 dbSNP
rs914203143 4362 dbSNP
rs1338628731 4371 dbSNP
rs1163972270 4380 dbSNP
rs919460279 4382 dbSNP
rs1425466929 4383 dbSNP
rs1353160112 4384 dbSNP
rs527261772 4385 dbSNP
rs763476627 4390 dbSNP
rs1019933254 4392 dbSNP
rs1241610513 4394 dbSNP
rs910817679 4411 dbSNP
rs188751235 4414 dbSNP
rs1474117194 4417 dbSNP
rs183813574 4425 dbSNP
rs951265390 4431 dbSNP
rs1213594305 4432 dbSNP
rs1025489657 4433 dbSNP
rs995514996 4434 dbSNP
rs1466169108 4435 dbSNP
rs898587641 4436 dbSNP
rs998984528 4439 dbSNP
rs1403708390 4441 dbSNP
rs1448711362 4445 dbSNP
rs564899787 4450 dbSNP
rs1332004395 4455 dbSNP
rs1376045863 4457 dbSNP
rs1444672588 4461 dbSNP
rs967854510 4463 dbSNP
rs1313030489 4465 dbSNP
rs551416275 4469 dbSNP
rs61946916 4473 dbSNP
rs140196071 4475 dbSNP
rs1360752651 4482 dbSNP
rs1199654934 4489 dbSNP
rs1267927418 4490 dbSNP
rs1258040461 4502 dbSNP
rs1456778374 4504 dbSNP
rs1175008940 4507 dbSNP
rs1437924896 4509 dbSNP
rs1268784235 4510 dbSNP
rs893613628 4513 dbSNP
rs1197775025 4527 dbSNP
rs1012190520 4530 dbSNP
rs1325182893 4531 dbSNP
rs1467043392 4541 dbSNP
rs562449101 4543 dbSNP
rs1171052278 4546 dbSNP
rs1402266429 4554 dbSNP
rs1057095973 4558 dbSNP
rs1460365823 4559 dbSNP
rs1171054646 4560 dbSNP
rs935612100 4562 dbSNP
rs1410751313 4570 dbSNP
rs1419025845 4575 dbSNP
rs1368458134 4589 dbSNP
rs376615655 4595 dbSNP
rs1281687521 4601 dbSNP
rs1342593545 4603 dbSNP
rs187110608 4616 dbSNP
rs1479077662 4617 dbSNP
rs1046031227 4618 dbSNP
rs1043922260 4630 dbSNP
rs897586338 4636 dbSNP
rs1224496221 4642 dbSNP
rs10655695 4643 dbSNP
rs182429037 4644 dbSNP
rs9551867 4645 dbSNP
rs1478559875 4656 dbSNP
rs1160285865 4661 dbSNP
rs1205612001 4665 dbSNP
rs910683710 4666 dbSNP
rs1166875815 4670 dbSNP
rs1270504726 4674 dbSNP
rs1220564702 4677 dbSNP
rs1301304260 4679 dbSNP
rs1362729136 4688 dbSNP
rs1400789336 4701 dbSNP
rs1277785065 4705 dbSNP
rs986419254 4706 dbSNP
rs914315727 4708 dbSNP
rs7997090 4712 dbSNP
rs1321582531 4716 dbSNP
rs1302047248 4718 dbSNP
rs964030070 4726 dbSNP
rs912247710 4728 dbSNP
rs987093010 4731 dbSNP
rs951337216 4735 dbSNP
rs1025392316 4740 dbSNP
rs995293039 4743 dbSNP
rs962548762 4755 dbSNP
rs1484807296 4756 dbSNP
rs557696320 4761 dbSNP
rs1414456996 4762 dbSNP
rs1423138194 4774 dbSNP
rs1022141701 4777 dbSNP
rs774120581 4780 dbSNP
rs1382303115 4785 dbSNP
rs1420353086 4792 dbSNP
rs561403258 4793 dbSNP
rs748081091 4794 dbSNP
rs896451243 4796 dbSNP
rs1450651350 4804 dbSNP
rs990218532 4804 dbSNP
rs957871768 4805 dbSNP
rs1379122366 4809 dbSNP
rs1244355056 4811 dbSNP
rs17074418 4822 dbSNP
rs1355275571 4826 dbSNP
rs1441152507 4830 dbSNP
rs1000148475 4842 dbSNP
rs1283187402 4842 dbSNP
rs1168657193 4864 dbSNP
rs906440031 4865 dbSNP
rs1482794949 4871 dbSNP
rs1181725445 4883 dbSNP
rs1416381373 4887 dbSNP
rs1395835494 4893 dbSNP
rs1286503284 4905 dbSNP
rs1206880330 4906 dbSNP
rs1440463074 4923 dbSNP
rs549688984 4923 dbSNP
rs993580638 4929 dbSNP
rs1406069420 4935 dbSNP
rs1416342964 4948 dbSNP
rs1382647127 4953 dbSNP
rs1358996229 4957 dbSNP
rs575287413 4963 dbSNP
rs1334026381 4967 dbSNP
rs1378275718 4969 dbSNP
rs148434553 4970 dbSNP
rs902746714 4973 dbSNP
rs184894472 4982 dbSNP
rs1231525027 4983 dbSNP
rs900692622 4985 dbSNP
rs1201525314 4991 dbSNP
rs1278857019 4991 dbSNP
rs1322636360 4991 dbSNP
rs1259932743 4992 dbSNP
rs1458106515 5001 dbSNP
rs773163342 5003 dbSNP
rs769784823 5004 dbSNP
rs1485761588 5013 dbSNP
rs1050571353 5017 dbSNP
rs933585507 5019 dbSNP
rs549705959 5022 dbSNP
rs923536614 5023 dbSNP
rs1465522944 5027 dbSNP
rs1355798734 5040 dbSNP
rs1307680287 5043 dbSNP
rs977674304 5047 dbSNP
rs748198803 5048 dbSNP
rs1437984762 5054 dbSNP
rs1304358679 5059 dbSNP
rs1450466050 5065 dbSNP
rs1376246738 5067 dbSNP
rs11839654 5072 dbSNP
rs929670359 5074 dbSNP
rs1344414442 5084 dbSNP
rs1221470254 5086 dbSNP
rs990680612 5087 dbSNP
rs1279814879 5092 dbSNP
rs1318545154 5094 dbSNP
rs566985785 5097 dbSNP
rs4572235 5098 dbSNP
rs973986018 5099 dbSNP
rs563223399 5102 dbSNP
rs962494516 5119 dbSNP
rs1160556112 5121 dbSNP
rs1023438055 5126 dbSNP
rs991280871 5127 dbSNP
rs746750827 5130 dbSNP
rs1479538787 5132 dbSNP
rs1196332602 5134 dbSNP
rs534220373 5136 dbSNP
rs370839918 5137 dbSNP
rs1424855584 5138 dbSNP
rs571174345 5156 dbSNP
rs755245493 5163 dbSNP
rs1475349092 5165 dbSNP
rs1393504445 5171 dbSNP
rs1406617149 5174 dbSNP
rs1256307296 5176 dbSNP
rs747431815 5182 dbSNP
rs980590065 5196 dbSNP
rs1402664960 5200 dbSNP
rs1489009299 5204 dbSNP
rs1340939755 5208 dbSNP
rs551352992 5210 dbSNP
rs531384353 5223 dbSNP
rs180848896 5224 dbSNP
rs1358304925 5237 dbSNP
rs1228965779 5243 dbSNP
rs1291075432 5245 dbSNP
rs999523886 5249 dbSNP
rs1489926444 5257 dbSNP
rs1219127536 5272 dbSNP
rs1264169397 5285 dbSNP
rs1446846037 5287 dbSNP
rs902542904 5298 dbSNP
rs1370709634 5301 dbSNP
rs780540562 5302 dbSNP
rs1473390536 5308 dbSNP
rs1022533880 5309 dbSNP
rs1163691997 5313 dbSNP
rs548841206 5315 dbSNP
rs1422180292 5316 dbSNP
rs529065660 5332 dbSNP
rs1360750644 5334 dbSNP
rs1381449857 5335 dbSNP
rs1315875245 5340 dbSNP
rs1314644475 5345 dbSNP
rs1448601196 5346 dbSNP
rs1011179251 5347 dbSNP
rs192469971 5349 dbSNP
rs1357463663 5352 dbSNP
rs1242392286 5354 dbSNP
rs900643301 5358 dbSNP
rs1287031189 5363 dbSNP
rs1350143641 5366 dbSNP
rs1015922439 5375 dbSNP
rs1023104 5376 dbSNP
rs1413160154 5380 dbSNP
rs1443332496 5382 dbSNP
rs1183556751 5385 dbSNP
rs1241829587 5386 dbSNP
rs533018790 5399 dbSNP
rs1342512951 5413 dbSNP
rs796351273 5423 dbSNP
rs942403182 5428 dbSNP
rs1159872284 5429 dbSNP
rs146201247 5437 dbSNP
rs890875853 5438 dbSNP
rs1343908141 5446 dbSNP
rs1262308795 5447 dbSNP
rs142148380 5450 dbSNP
rs1462340794 5459 dbSNP
rs997698565 5459 dbSNP
rs1417555491 5460 dbSNP
rs929640758 5472 dbSNP
rs1185442426 5473 dbSNP
rs10478 5475 dbSNP
rs1261840948 5487 dbSNP
rs533474449 5494 dbSNP
rs1449100598 5497 dbSNP
rs555814601 5498 dbSNP
rs1310027965 5504 dbSNP
rs1335423947 5505 dbSNP
rs1237218512 5510 dbSNP
rs1042366441 5511 dbSNP
rs1185368126 5513 dbSNP
rs1346234297 5519 dbSNP
rs1203419266 5533 dbSNP
rs765721573 5537 dbSNP
rs541985430 5539 dbSNP
rs573307663 5570 dbSNP
rs914593038 5579 dbSNP
rs1250549443 5586 dbSNP
rs916378689 5590 dbSNP
rs941824066 5598 dbSNP
rs553567339 5600 dbSNP
rs1179309153 5601 dbSNP
rs540044701 5603 dbSNP
rs990666926 5604 dbSNP
rs571161809 5605 dbSNP
rs960859235 5606 dbSNP
rs1267196400 5607 dbSNP
rs1035096355 5608 dbSNP
rs1298660568 5610 dbSNP
rs978603745 5628 dbSNP
rs927394271 5629 dbSNP
rs557730158 5632 dbSNP
rs1303750206 5648 dbSNP
rs1331839682 5673 dbSNP
rs1223286418 5679 dbSNP
rs1281725901 5680 dbSNP
rs1320649376 5681 dbSNP
rs981455538 5686 dbSNP
rs966674543 5694 dbSNP
rs562793987 5700 dbSNP
rs1011128591 5704 dbSNP
rs1480060569 5708 dbSNP
rs534763401 5716 dbSNP
rs1193515091 5717 dbSNP
rs1269031271 5723 dbSNP
rs1480539050 5724 dbSNP
rs2149972 5725 dbSNP
rs1198449619 5730 dbSNP
rs1427002562 5732 dbSNP
rs1478663751 5733 dbSNP
rs900757958 5748 dbSNP
rs1460538911 5752 dbSNP
rs1295297631 5758 dbSNP
rs1271021795 5761 dbSNP
rs1018312183 5780 dbSNP
rs548985794 5781 dbSNP
rs972424636 5789 dbSNP
rs879029502 5793 dbSNP
rs961974083 5794 dbSNP
rs1295520190 5801 dbSNP
rs1306202496 5802 dbSNP
rs1287249447 5806 dbSNP
rs1266646167 5807 dbSNP
rs1490364280 5808 dbSNP
rs1328355326 5818 dbSNP
rs528947998 5832 dbSNP
rs1266326158 5833 dbSNP
rs1489181168 5836 dbSNP
rs890643436 5844 dbSNP
rs1050843685 5855 dbSNP
rs1426622948 5857 dbSNP
rs1167025178 5858 dbSNP
rs993891038 5864 dbSNP
rs1385989049 5867 dbSNP
rs549994536 5868 dbSNP
rs1038005451 5872 dbSNP
rs767218578 5873 dbSNP
rs187133921 5877 dbSNP
rs1055481971 5883 dbSNP
rs566572180 5896 dbSNP
rs1431941328 5898 dbSNP
rs952996886 5899 dbSNP
rs1394285617 5900 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545215. RNA binding protein: AGO4. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' acAUGUCGUCCGUGUCUGUcc 5'
            |||| ||  |||| |||  
Target 5' caUACA-CA--CACAUACA-- 3'
 		7 - 22
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545215
Method / RBP PAR-CLIP / AGO4
Cell line / Condition HEK293 / Control
Location of target site ENST00000380615.3 | 3UTR | GACACACAUACACACACAUACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
134 hsa-miR-3120-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT096972 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 2 2
MIRT442624 LOX lysyl oxidase 2 2
MIRT473438 MDM4 MDM4, p53 regulator 2 2
MIRT490011 KIFC2 kinesin family member C2 2 2
MIRT496449 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 2 2
MIRT496752 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT497721 CYP1A1 cytochrome P450 family 1 subfamily A member 1 2 2
MIRT498287 PADI3 peptidyl arginine deiminase 3 2 2
MIRT503195 ACVR1B activin A receptor type 1B 2 4
MIRT504760 TEP1 telomerase associated protein 1 2 4
MIRT517810 UGDH UDP-glucose 6-dehydrogenase 2 6
MIRT519686 ZNF622 zinc finger protein 622 2 4
MIRT520263 URGCP upregulator of cell proliferation 2 2
MIRT523051 ICMT isoprenylcysteine carboxyl methyltransferase 2 2
MIRT525601 OLR1 oxidized low density lipoprotein receptor 1 2 4
MIRT526995 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT528699 TRAF3IP2 TRAF3 interacting protein 2 2 4
MIRT533142 WNT10A Wnt family member 10A 2 2
MIRT537618 ERI1 exoribonuclease 1 2 2
MIRT539707 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT539752 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT539808 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT539941 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT540424 FAM83F family with sequence similarity 83 member F 2 2
MIRT540509 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT540720 GUF1 GUF1 homolog, GTPase 2 2
MIRT541630 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT542286 POLR3K RNA polymerase III subunit K 2 2
MIRT542456 AKR7A2 aldo-keto reductase family 7 member A2 2 2
MIRT542550 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT542771 PPAP2B phospholipid phosphatase 3 2 2
MIRT550085 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT551458 CARKD NAD(P)HX dehydratase 2 2
MIRT555622 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT569136 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT572328 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT574607 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT575583 Mcm8 minichromosome maintenance 8 homologous recombination repair factor 2 4
MIRT576125 Hrk harakiri, BCL2 interacting protein (contains only BH3 domain) 2 5
MIRT576657 Fam216a family with sequence similarity 216, member A 2 2
MIRT607222 ACSM2A acyl-CoA synthetase medium chain family member 2A 2 4
MIRT607292 CD300E CD300e molecule 2 6
MIRT607746 ANGPT4 angiopoietin 4 2 2
MIRT607905 SPRYD4 SPRY domain containing 4 2 2
MIRT608159 HRK harakiri, BCL2 interacting protein 2 7
MIRT608657 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT609115 ZNF703 zinc finger protein 703 2 6
MIRT610231 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT610870 NUDCD3 NudC domain containing 3 2 2
MIRT611217 MC2R melanocortin 2 receptor 2 2
MIRT614858 PLEKHA6 pleckstrin homology domain containing A6 2 2
MIRT616966 LMX1A LIM homeobox transcription factor 1 alpha 2 2
MIRT617258 GLIPR1L2 GLI pathogenesis related 1 like 2 2 2
MIRT618009 SLC9A3R2 SLC9A3 regulator 2 2 2
MIRT619067 BSND barttin CLCNK type accessory beta subunit 2 4
MIRT619295 FAM26E calcium homeostasis modulator family member 5 2 2
MIRT619348 GINM1 glycoprotein integral membrane 1 2 2
MIRT619362 CFHR5 complement factor H related 5 2 2
MIRT619541 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT619782 NRIP2 nuclear receptor interacting protein 2 2 2
MIRT619994 NPAP1 nuclear pore associated protein 1 2 2
MIRT621030 CDC14B cell division cycle 14B 2 2
MIRT622033 STAT5A signal transducer and activator of transcription 5A 2 2
MIRT622728 PITPNM3 PITPNM family member 3 2 2
MIRT623144 NAV2 neuron navigator 2 2 2
MIRT623600 IPO9 importin 9 2 2
MIRT624608 B3GALT5 beta-1,3-galactosyltransferase 5 2 2
MIRT624905 CTCFL CCCTC-binding factor like 2 2
MIRT625030 SPC24 SPC24, NDC80 kinetochore complex component 2 2
MIRT625688 MCM8 minichromosome maintenance 8 homologous recombination repair factor 2 5
MIRT626531 EMCN endomucin 2 2
MIRT627204 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT628033 LSAMP limbic system-associated membrane protein 2 2
MIRT628203 FREM2 FRAS1 related extracellular matrix protein 2 2 2
MIRT631012 LINS lines homolog 1 2 2
MIRT633195 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT633890 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT634023 MOB4 MOB family member 4, phocein 2 2
MIRT634416 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 2
MIRT636866 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT642527 ANKRD9 ankyrin repeat domain 9 2 2
MIRT645408 FAM110A family with sequence similarity 110 member A 2 2
MIRT645635 SYTL4 synaptotagmin like 4 2 2
MIRT646013 TNFAIP8L2 TNF alpha induced protein 8 like 2 2 2
MIRT646686 ASGR2 asialoglycoprotein receptor 2 2 2
MIRT652838 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT655156 PHF21B PHD finger protein 21B 2 2
MIRT658491 EXOC7 exocyst complex component 7 2 2
MIRT659398 CORO2A coronin 2A 2 2
MIRT666825 PRCP prolylcarboxypeptidase 2 2
MIRT666866 POU2F2 POU class 2 homeobox 2 2 2
MIRT668224 GABRA1 gamma-aminobutyric acid type A receptor alpha1 subunit 2 2
MIRT673288 PDE3A phosphodiesterase 3A 2 2
MIRT673878 KLF2 Kruppel like factor 2 2 2
MIRT681721 KCNE4 potassium voltage-gated channel subfamily E regulatory subunit 4 2 2
MIRT682406 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT684109 MCM10 minichromosome maintenance 10 replication initiation factor 2 2
MIRT684423 TUFT1 tuftelin 1 2 2
MIRT684684 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT686638 TMEM184C transmembrane protein 184C 2 2
MIRT689457 NXN nucleoredoxin 2 2
MIRT689627 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT690773 PLA2G2C phospholipase A2 group IIC 2 2
MIRT690822 SGSM2 small G protein signaling modulator 2 2 2
MIRT693669 MXRA7 matrix remodeling associated 7 2 2
MIRT695553 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT695872 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT698160 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT699933 RUFY2 RUN and FYVE domain containing 2 2 2
MIRT708639 UBE2W ubiquitin conjugating enzyme E2 W 2 2
MIRT710816 RAB11FIP4 RAB11 family interacting protein 4 2 2
MIRT711242 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT711542 MSH3 mutS homolog 3 2 2
MIRT711749 DTX1 deltex E3 ubiquitin ligase 1 2 2
MIRT712303 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT712922 RPF2 ribosome production factor 2 homolog 2 2
MIRT714027 SYDE2 synapse defective Rho GTPase homolog 2 2 2
MIRT714768 TERF1 telomeric repeat binding factor 1 2 2
MIRT714844 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 2 2
MIRT715223 NPVF neuropeptide VF precursor 2 2
MIRT716110 GMPS guanine monophosphate synthase 2 2
MIRT716174 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT716383 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT716527 KSR2 kinase suppressor of ras 2 2 2
MIRT716962 P2RY6 pyrimidinergic receptor P2Y6 2 2
MIRT717605 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT717696 PTGS1 prostaglandin-endoperoxide synthase 1 2 2
MIRT721360 ENTHD1 ENTH domain containing 1 2 2
MIRT721381 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT721935 RASSF2 Ras association domain family member 2 2 2
MIRT722094 SUSD1 sushi domain containing 1 2 2
MIRT722837 C17orf102 chromosome 17 open reading frame 102 2 2
MIRT722990 TOR1A torsin family 1 member A 2 2
MIRT724174 ABCF2 ATP binding cassette subfamily F member 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3120-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-3120-5p Prednisone/Azathioprine/Methotrexate/Cyclophosphamide/Mycophenolate mofetil sensitive tissue (myasthenia gravis)
hsa-miR-3120-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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