pre-miRNA Information
pre-miRNA hsa-mir-6787   
Genomic Coordinates chr17: 82236668 - 82236728
Description Homo sapiens miR-6787 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6787-5p
Sequence 6| UGGCGGGGGUAGAGCUGGCUGC |27
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs778888046 4 dbSNP
rs772018061 5 dbSNP
rs760886644 6 dbSNP
rs776925052 7 dbSNP
rs760060985 8 dbSNP
rs1432528063 9 dbSNP
rs778772390 10 dbSNP
rs924024166 11 dbSNP
rs201523090 13 dbSNP
rs1451075810 17 dbSNP
rs1378844609 18 dbSNP
Putative Targets

Gene Information
Gene Symbol CTTN   
Synonyms EMS1
Description cortactin
Transcript NM_005231   
Other Transcripts NM_001184740 , NM_138565   
Expression
Putative miRNA Targets on CTTN
3'UTR of CTTN
(miRNA target sites are highlighted)
>CTTN|NM_005231|3'UTR
   1 GGCCCCCAGCCCCCCCCCGGAGCTGCGCCCTGGATCCTCACACTACAGATCAGGCCTTCTTTGGTTCTTGGGTGGTTTTG
  81 GGTTTTTTCTGTTTTTTTTTTTTTTTTTTTTTTTTTGAAGGTGGGGAGGGGAATATACACATTGCTTTTATATTTAATAC
 161 TTTTGCTGATGCTTTTGAAAATGTTTATGCCACAGAATTTGCTAATATATTGTAATCACATTCCTTAGGAGGACTTTGGT
 241 AATTGGTTTTATGCATTGATGGTTTTTTTTTTCTTTTTTGCCAAATTGACTGTCACGCGGCAGCTTCAGGGAGCTCGCAT
 321 TCTCTTGTGTTCGTGTTGCCCTCGTGCCCATCAAGTGCAGTCGGGACCTCCCAGGACAAGCACGAGGCCTCAGGTCGGCC
 401 CTGTGGCGGGTAGGCAGGAAGGACTGTCCCAGACGAGGGGCTTCCTCTAGAGTCTCACTGCTGGGGAGGAGAGGACTGGG
 481 CCTGATGGAAGTTAACCCGGAGCTAAGTCACCCAGAGCACAGGAGCTGCCATGTCAGATGGGAAATCTGCCTATGTCATA
 561 CCGTGACAGCCCGCAGGATCAGGTGACTTCTAGCAGAGACCCTGGTTTTTTTCCTGTGCCCACTCCGGCTTGTCCTCATC
 641 TCTACCCATCCCCTGATGCCCAGGTCACCGGGAGGGCTGCTGGGAGCCTCTCCTGTCCCCGCCGGGCAGTGTCACTGAGT
 721 CCTTGAAATCCTCCCCTGCCCCGCGGGTCTCTGGATTGGGACGCACAGTGCAGTTGAGGTCTGCGTCGGGCTTGGCTTTT
 801 CACAAAGGCTGATGTCTTAACTGTCACCCATATGGTCCCTGGGCCACCGGGCAGCCTGGGGCGGTGTGTGTGCCATGTCA
 881 CAGCATGGCCTCTCGGCCTTGGGAAGGAAGGCAGTGCCTGCTCTGCTGTGAGCCGCCAGGAACCCTCCTCCTGTCAATGG
 961 GGGTGTAGTATTTTTGCCAAAATATCATGTTCAATTTCAGTAGTTTGATCAGTTGAAGGCTAGAAGTGTGAAGTGCAGAT
1041 GAGTGTGTGTTCTTCCCCAAGGTCCCCCCACAGCTCCAGGACACCGCTGTCCTGGCATTTGTGGCCACTCACTTTGTAGG
1121 AAACTCATCTCCTTCCTGAGGAGCCGGGAGGCTGGACCAGTCCCGTCGTGCAGTCAGGTGGGCGGTGTGTCTTTCCAGAA
1201 GGTCACGTGGAAATGTCTCGGGACTTGGGTCCCGGAGTGCCCGTGAAGCGTGTTTTTGCTCCTGAGGTGCATTTTCTCAT
1281 CATCCTTGCTTTACCACAATGAGCAATGAGGTCGGGTTTTATATGCAACTTATTGTATCTGAATTCCTGTAGCACACCTC
1361 ATAGGTATGATTTTTTTAAATTAAAGAATTCAGAATAAACATTTTTTGATCCACTTGCGTGAAAAAAAAAAAAAAAAAAA
1441 AAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' cgUCGGUCGAGAUGGGGGCGGu 5'
            ||||  : ||::||||||| 
Target 5' ggAGCCTCTCCTGTCCCCGCCg 3'
683 - 704 164.00 -29.60
2
miRNA  3' cgUCGG----UCGAGAUGGGGGCGGu 5'
            ||:|    |  ||  ||||:||| 
Target 5' tgAGTCCTTGAAATCCTCCCCTGCCc 3'
716 - 741 134.00 -19.20
3
miRNA  3' cgUCGGUCGAGAUGGGGGCGGu 5'
            :|||  | | :||||| || 
Target 5' --GGCC--CCCAGCCCCCCCCc 3'
1 - 18 124.00 -23.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
634459 325 ClinVar
721344 398 ClinVar
COSN30490376 15 COSMIC
COSN30531529 24 COSMIC
COSN30164910 29 COSMIC
COSN26554192 65 COSMIC
COSN18750936 90 COSMIC
COSN20070912 90 COSMIC
COSN30094959 92 COSMIC
COSN15664988 128 COSMIC
COSN31571849 166 COSMIC
COSN31551594 244 COSMIC
COSN28859783 263 COSMIC
COSN18735718 273 COSMIC
COSN18746889 273 COSMIC
COSN26571961 274 COSMIC
COSM8195439 298 COSMIC
COSM5785251 317 COSMIC
COSM6552363 318 COSMIC
COSM6996425 318 COSMIC
COSM9225088 334 COSMIC
COSM5438596 340 COSMIC
COSM8530245 345 COSMIC
COSM9367760 358 COSMIC
COSM9782623 371 COSMIC
COSM5728771 401 COSMIC
COSM3788042 409 COSMIC
COSM6552364 415 COSMIC
COSM5428781 457 COSMIC
COSM6399836 459 COSMIC
COSM8379046 470 COSMIC
COSM5713687 488 COSMIC
COSM7897763 492 COSMIC
COSM9857861 499 COSMIC
COSM8254895 500 COSMIC
COSM8901636 506 COSMIC
COSM6457030 512 COSMIC
COSM7972858 523 COSMIC
COSM9399043 524 COSMIC
COSM7795829 530 COSMIC
COSM7323563 548 COSMIC
COSM8450521 556 COSMIC
COSM7341218 564 COSMIC
COSM9743383 572 COSMIC
COSM8233033 573 COSMIC
COSM4146253 578 COSMIC
COSM7939254 591 COSMIC
COSN7018341 605 COSMIC
COSN30525115 606 COSMIC
COSN28539272 607 COSMIC
COSN20077427 628 COSMIC
COSN32059425 638 COSMIC
COSN19621533 737 COSMIC
COSN31590154 746 COSMIC
COSN31484583 987 COSMIC
COSN31485577 1015 COSMIC
COSN27423712 1049 COSMIC
COSN26553645 1050 COSMIC
COSN30161147 1056 COSMIC
COSN30486162 1058 COSMIC
COSN26972390 1086 COSMIC
COSN19671700 1093 COSMIC
COSN30506376 1096 COSMIC
COSM8247329 1113 COSMIC
COSM8311965 1130 COSMIC
COSM8130141 1139 COSMIC
COSM8676077 1142 COSMIC
COSM9765553 1142 COSMIC
COSM4392342 1146 COSMIC
COSM6570325 1154 COSMIC
COSM1192972 1165 COSMIC
COSM8018639 1165 COSMIC
COSM9168873 1166 COSMIC
COSM7816686 1169 COSMIC
COSM6637866 1185 COSMIC
COSM6637891 1209 COSMIC
COSM7790498 1210 COSMIC
COSM6315501 1211 COSMIC
COSM9786229 1220 COSMIC
COSM9414705 1221 COSMIC
COSM8215884 1225 COSMIC
COSM2044015 1235 COSMIC
COSM3368545 1241 COSMIC
COSM6637862 1243 COSMIC
COSN30511272 1254 COSMIC
COSN31490396 1279 COSMIC
COSN26972394 1301 COSMIC
COSN31598370 1313 COSMIC
COSN30499821 1314 COSMIC
COSN30105073 1345 COSMIC
COSN30494931 1355 COSMIC
COSN8863582 1362 COSMIC
COSN30115059 1387 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1233595546 3 dbSNP
rs1436356629 3 dbSNP
rs747445153 4 dbSNP
rs368080048 5 dbSNP
rs1217105624 6 dbSNP
rs770524097 8 dbSNP
rs1335249693 9 dbSNP
rs553369355 10 dbSNP
rs745604725 10 dbSNP
rs771134703 10 dbSNP
rs769578467 11 dbSNP
rs199842991 12 dbSNP
rs543537964 13 dbSNP
rs111380669 14 dbSNP
rs112108792 15 dbSNP
rs200256430 16 dbSNP
rs192809533 17 dbSNP
rs185470349 18 dbSNP
rs747909707 19 dbSNP
rs773153107 20 dbSNP
rs759643721 21 dbSNP
rs374041724 23 dbSNP
rs775739225 25 dbSNP
rs763150116 27 dbSNP
rs1405357015 28 dbSNP
rs1409265139 29 dbSNP
rs1319552514 30 dbSNP
rs1362544845 33 dbSNP
rs536934781 34 dbSNP
rs1438158839 37 dbSNP
rs768117056 38 dbSNP
rs931433021 38 dbSNP
rs753300161 39 dbSNP
rs990322837 42 dbSNP
rs368163972 43 dbSNP
rs537018772 44 dbSNP
rs1283043554 46 dbSNP
rs761192172 46 dbSNP
rs757585907 47 dbSNP
rs1221877237 48 dbSNP
rs1355357890 48 dbSNP
rs1205710619 52 dbSNP
rs890018322 56 dbSNP
rs1440056314 57 dbSNP
rs913310642 68 dbSNP
rs549131671 69 dbSNP
rs755029640 70 dbSNP
rs1007565993 79 dbSNP
rs1346026924 80 dbSNP
rs1158596319 83 dbSNP
rs1418290779 83 dbSNP
rs1397244396 88 dbSNP
rs573514183 88 dbSNP
rs1174881284 89 dbSNP
rs375234792 89 dbSNP
rs1265803639 90 dbSNP
rs1485878964 90 dbSNP
rs567332793 90 dbSNP
rs1241187000 91 dbSNP
rs369558151 91 dbSNP
rs1173113391 92 dbSNP
rs1174657174 92 dbSNP
rs1191138287 92 dbSNP
rs1209911236 92 dbSNP
rs1253041240 92 dbSNP
rs1257698585 92 dbSNP
rs1288555226 92 dbSNP
rs1347149600 92 dbSNP
rs1349850788 92 dbSNP
rs1376454344 92 dbSNP
rs1398366328 92 dbSNP
rs1418141119 92 dbSNP
rs1428634718 92 dbSNP
rs1434422895 92 dbSNP
rs1482127764 92 dbSNP
rs1486446717 92 dbSNP
rs370623790 92 dbSNP
rs534537288 92 dbSNP
rs1228029674 93 dbSNP
rs1038682736 94 dbSNP
rs1224629482 95 dbSNP
rs1216799824 96 dbSNP
rs1284211448 97 dbSNP
rs901540574 98 dbSNP
rs1395840109 101 dbSNP
rs1400475147 101 dbSNP
rs1300469729 102 dbSNP
rs1462934789 103 dbSNP
rs1353487038 104 dbSNP
rs1327651801 106 dbSNP
rs1418155765 108 dbSNP
rs997218014 108 dbSNP
rs1186736242 110 dbSNP
rs1206091212 117 dbSNP
rs1421880756 117 dbSNP
rs1158342006 118 dbSNP
rs1460921852 119 dbSNP
rs904542107 123 dbSNP
rs1234753481 124 dbSNP
rs1196376142 127 dbSNP
rs937228339 128 dbSNP
rs1256007649 133 dbSNP
rs1031349742 147 dbSNP
rs1176360778 151 dbSNP
rs955794048 153 dbSNP
rs1339140175 157 dbSNP
rs1309602210 159 dbSNP
rs553093996 165 dbSNP
rs1400231011 168 dbSNP
rs1329852343 170 dbSNP
rs1462593952 173 dbSNP
rs1394538180 182 dbSNP
rs1011341416 185 dbSNP
rs1456058172 191 dbSNP
rs571346659 202 dbSNP
rs1021890358 210 dbSNP
rs1418235417 218 dbSNP
rs538973171 225 dbSNP
rs969989803 231 dbSNP
rs1195390685 235 dbSNP
rs970602309 251 dbSNP
rs556819188 252 dbSNP
rs979893437 257 dbSNP
rs767936018 258 dbSNP
rs1487037628 259 dbSNP
rs1215215313 260 dbSNP
rs1262654357 263 dbSNP
rs60846336 263 dbSNP
rs746683506 263 dbSNP
rs764829435 263 dbSNP
rs750905522 264 dbSNP
rs1376580118 266 dbSNP
rs1425242373 269 dbSNP
rs1184944137 271 dbSNP
rs1367156221 272 dbSNP
rs972735473 273 dbSNP
rs1054340 274 dbSNP
rs1159801118 276 dbSNP
rs1156686298 280 dbSNP
rs1362950739 281 dbSNP
rs1417969941 282 dbSNP
rs1297702231 286 dbSNP
rs918634334 287 dbSNP
rs1158744023 291 dbSNP
rs779693956 292 dbSNP
rs1398063040 294 dbSNP
rs576062992 297 dbSNP
rs754679851 298 dbSNP
rs1239442916 299 dbSNP
rs767521791 300 dbSNP
rs928396163 301 dbSNP
rs1252228001 303 dbSNP
rs1198268637 304 dbSNP
rs1351477068 305 dbSNP
rs778569626 309 dbSNP
rs767254828 310 dbSNP
rs1264166589 312 dbSNP
rs1483944718 315 dbSNP
rs371695758 317 dbSNP
rs752846770 318 dbSNP
rs1286419135 319 dbSNP
rs1041732331 323 dbSNP
rs758070018 325 dbSNP
rs1442227798 329 dbSNP
rs1179605961 330 dbSNP
rs907533003 333 dbSNP
rs769920155 334 dbSNP
rs762955254 336 dbSNP
rs867834963 340 dbSNP
rs764238947 341 dbSNP
rs1467588294 342 dbSNP
rs1171047082 344 dbSNP
rs12858 345 dbSNP
rs1447759515 351 dbSNP
rs1333182014 356 dbSNP
rs762120184 358 dbSNP
rs1318619040 361 dbSNP
rs767896485 363 dbSNP
rs750947022 364 dbSNP
rs1313456449 365 dbSNP
rs1230375647 370 dbSNP
rs868384478 372 dbSNP
rs779635477 373 dbSNP
rs1339703892 381 dbSNP
rs756681897 384 dbSNP
rs766922817 385 dbSNP
rs1456711078 387 dbSNP
rs751338803 388 dbSNP
rs753410373 395 dbSNP
rs1435015595 396 dbSNP
rs1477106795 397 dbSNP
rs754487720 398 dbSNP
rs778461077 402 dbSNP
rs747805385 403 dbSNP
rs1011772457 406 dbSNP
rs758177843 407 dbSNP
rs777612042 408 dbSNP
rs1008264060 409 dbSNP
rs1294068419 410 dbSNP
rs747018962 411 dbSNP
rs770860602 412 dbSNP
rs1361027214 416 dbSNP
rs781053306 421 dbSNP
rs555464916 422 dbSNP
rs1340581502 423 dbSNP
rs1220156125 430 dbSNP
rs768745062 431 dbSNP
rs774480318 435 dbSNP
rs762078691 436 dbSNP
rs1266375820 438 dbSNP
rs772381317 441 dbSNP
rs1189973851 442 dbSNP
rs773714716 445 dbSNP
rs1478151212 446 dbSNP
rs1196134177 453 dbSNP
rs1294693912 453 dbSNP
rs1415204109 457 dbSNP
rs1421696090 459 dbSNP
rs541279335 463 dbSNP
rs200616030 466 dbSNP
rs756164892 467 dbSNP
rs113099964 469 dbSNP
rs12280329 472 dbSNP
rs759007497 473 dbSNP
rs1292864514 474 dbSNP
rs764781150 475 dbSNP
rs1401232195 476 dbSNP
rs777867052 487 dbSNP
rs970316901 489 dbSNP
rs1339397661 490 dbSNP
rs1228516403 491 dbSNP
rs1421794387 492 dbSNP
rs1190285696 493 dbSNP
rs752350707 499 dbSNP
rs367662526 500 dbSNP
rs777226026 501 dbSNP
rs980704130 503 dbSNP
rs751371204 504 dbSNP
rs1488672191 507 dbSNP
rs781141281 509 dbSNP
rs1261080097 511 dbSNP
rs745777702 512 dbSNP
rs768671600 521 dbSNP
rs1415777655 525 dbSNP
rs1421761009 527 dbSNP
rs779042199 529 dbSNP
rs748105655 530 dbSNP
rs372839185 539 dbSNP
rs754157996 541 dbSNP
rs1295865996 543 dbSNP
rs907554873 546 dbSNP
rs1448392392 547 dbSNP
rs1304157449 554 dbSNP
rs1381816434 555 dbSNP
rs1168076894 556 dbSNP
rs941656182 559 dbSNP
rs1315006182 560 dbSNP
rs773518395 561 dbSNP
rs761150029 563 dbSNP
rs202066566 564 dbSNP
rs760075698 569 dbSNP
rs921874654 570 dbSNP
rs1211092428 572 dbSNP
rs764720796 573 dbSNP
rs756356449 574 dbSNP
rs762314203 576 dbSNP
rs77162934 578 dbSNP
rs571028124 582 dbSNP
rs780946934 588 dbSNP
rs1444027228 590 dbSNP
rs1414689663 594 dbSNP
rs750390405 599 dbSNP
rs1052073172 601 dbSNP
rs756078282 602 dbSNP
rs754813996 606 dbSNP
rs779795316 606 dbSNP
rs61430373 607 dbSNP
rs758368130 615 dbSNP
rs778179758 617 dbSNP
rs1336538982 620 dbSNP
rs1378091591 621 dbSNP
rs563953766 622 dbSNP
rs1307625679 624 dbSNP
rs1471334356 625 dbSNP
rs1350058012 627 dbSNP
rs1219834043 628 dbSNP
rs372245816 630 dbSNP
rs777132341 633 dbSNP
rs1203259698 636 dbSNP
rs746152205 637 dbSNP
rs1320751798 641 dbSNP
rs1287239777 643 dbSNP
rs1225283917 644 dbSNP
rs1351085840 652 dbSNP
rs548970096 654 dbSNP
rs891487996 659 dbSNP
rs757348596 664 dbSNP
rs1444460121 668 dbSNP
rs1012014392 670 dbSNP
rs1386649463 671 dbSNP
rs367804569 677 dbSNP
rs1043232827 687 dbSNP
rs779463316 701 dbSNP
rs1304085781 702 dbSNP
rs1381289596 704 dbSNP
rs567379761 705 dbSNP
rs1035861532 710 dbSNP
rs1385638703 718 dbSNP
rs1255372130 734 dbSNP
rs960168853 735 dbSNP
rs1487849111 737 dbSNP
rs1320832806 739 dbSNP
rs1327168420 743 dbSNP
rs983219857 744 dbSNP
rs115120216 745 dbSNP
rs1237607832 757 dbSNP
rs1361811038 758 dbSNP
rs963148515 763 dbSNP
rs973512664 765 dbSNP
rs1246948730 768 dbSNP
rs1366962797 772 dbSNP
rs994114093 779 dbSNP
rs1433141915 782 dbSNP
rs1025631863 783 dbSNP
rs952860998 785 dbSNP
rs921612546 786 dbSNP
rs1177381708 788 dbSNP
rs1432137635 789 dbSNP
rs1018736501 791 dbSNP
rs964181083 793 dbSNP
rs1488415645 810 dbSNP
rs372664229 812 dbSNP
rs1262264009 815 dbSNP
rs1445935117 828 dbSNP
rs546377083 834 dbSNP
rs1244626398 839 dbSNP
rs114309294 840 dbSNP
rs1256558257 846 dbSNP
rs538440123 849 dbSNP
rs1311739639 850 dbSNP
rs1299282390 852 dbSNP
rs911738852 853 dbSNP
rs1341381993 859 dbSNP
rs935141931 860 dbSNP
rs988394737 861 dbSNP
rs1368309794 862 dbSNP
rs1377625017 864 dbSNP
rs912893287 864 dbSNP
rs1303989903 865 dbSNP
rs1465972951 876 dbSNP
rs1052201443 889 dbSNP
rs1456708947 890 dbSNP
rs913346736 892 dbSNP
rs543051711 895 dbSNP
rs145280944 896 dbSNP
rs905822174 898 dbSNP
rs1054381 899 dbSNP
rs1318668072 911 dbSNP
rs1191020952 916 dbSNP
rs1002199393 921 dbSNP
rs775796530 922 dbSNP
rs1057376550 925 dbSNP
rs1453729461 935 dbSNP
rs1482239891 936 dbSNP
rs147222758 938 dbSNP
rs1252946555 951 dbSNP
rs1200630703 954 dbSNP
rs140642420 958 dbSNP
rs1005084464 966 dbSNP
rs1342703334 981 dbSNP
rs1313887644 984 dbSNP
rs1015094055 986 dbSNP
rs994082978 987 dbSNP
rs1377651145 988 dbSNP
rs963500179 1013 dbSNP
rs994558052 1017 dbSNP
rs1047045427 1023 dbSNP
rs183695190 1026 dbSNP
rs1398894281 1028 dbSNP
rs1168168964 1036 dbSNP
rs1462689533 1038 dbSNP
rs1029083506 1044 dbSNP
rs953045827 1045 dbSNP
rs1368619940 1050 dbSNP
rs534953093 1065 dbSNP
rs116399359 1066 dbSNP
rs1252623688 1067 dbSNP
rs1179149539 1068 dbSNP
rs770350238 1071 dbSNP
rs1176719666 1077 dbSNP
rs1232183579 1078 dbSNP
rs775813879 1084 dbSNP
rs762558565 1086 dbSNP
rs1422420226 1087 dbSNP
rs1237632281 1089 dbSNP
rs1413611555 1096 dbSNP
rs763566875 1100 dbSNP
rs781073979 1106 dbSNP
rs1401485605 1109 dbSNP
rs578147334 1111 dbSNP
rs761446124 1113 dbSNP
rs767085678 1117 dbSNP
rs1437765891 1120 dbSNP
rs188165945 1127 dbSNP
rs563990812 1145 dbSNP
rs200495186 1146 dbSNP
rs753686629 1147 dbSNP
rs758599881 1151 dbSNP
rs777986823 1155 dbSNP
rs1460130170 1156 dbSNP
rs1319763725 1157 dbSNP
rs1375604853 1161 dbSNP
rs769365803 1162 dbSNP
rs1328693822 1164 dbSNP
rs372830860 1165 dbSNP
rs375900415 1166 dbSNP
rs781509428 1168 dbSNP
rs1057142804 1169 dbSNP
rs1244541192 1171 dbSNP
rs746268916 1174 dbSNP
rs1193952998 1177 dbSNP
rs1425260659 1178 dbSNP
rs200675557 1179 dbSNP
rs776107939 1184 dbSNP
rs1396194802 1185 dbSNP
rs779295230 1186 dbSNP
rs773851443 1197 dbSNP
rs1176880055 1199 dbSNP
rs3209195 1199 dbSNP
rs761252399 1202 dbSNP
rs767175804 1207 dbSNP
rs772697525 1208 dbSNP
rs1342656893 1214 dbSNP
rs1056940776 1220 dbSNP
rs760556194 1221 dbSNP
rs766063811 1224 dbSNP
rs368918291 1227 dbSNP
rs1287571290 1232 dbSNP
rs1490050082 1233 dbSNP
rs759542068 1234 dbSNP
rs765200388 1235 dbSNP
rs751702670 1241 dbSNP
rs1382888358 1242 dbSNP
rs757365171 1243 dbSNP
rs762509520 1244 dbSNP
rs1028718002 1246 dbSNP
rs756553535 1250 dbSNP
rs749864731 1251 dbSNP
rs1383887225 1254 dbSNP
rs1174217294 1258 dbSNP
rs769161176 1260 dbSNP
rs1298934860 1261 dbSNP
rs1479076050 1264 dbSNP
rs1362526885 1266 dbSNP
rs1803536 1267 dbSNP
rs953229480 1268 dbSNP
rs748113416 1272 dbSNP
rs779340012 1272 dbSNP
rs747685375 1276 dbSNP
rs1005496593 1281 dbSNP
rs771537052 1288 dbSNP
rs1265539390 1291 dbSNP
rs867621755 1295 dbSNP
rs1488146624 1297 dbSNP
rs180921087 1306 dbSNP
rs554975914 1306 dbSNP
rs746197944 1308 dbSNP
rs563424094 1311 dbSNP
rs1345190046 1312 dbSNP
rs530937755 1314 dbSNP
rs1230359232 1315 dbSNP
rs1018557122 1317 dbSNP
rs1342013557 1322 dbSNP
rs1278388397 1327 dbSNP
rs1226558475 1330 dbSNP
rs543335147 1334 dbSNP
rs1323630341 1342 dbSNP
rs186202595 1347 dbSNP
rs564342805 1348 dbSNP
rs772594756 1348 dbSNP
rs915064488 1350 dbSNP
rs1401329495 1352 dbSNP
rs780487009 1353 dbSNP
rs1172082694 1358 dbSNP
rs1009665341 1359 dbSNP
rs1481387776 1360 dbSNP
rs1426090794 1361 dbSNP
rs6894 1362 dbSNP
rs570787583 1363 dbSNP
rs1261468551 1371 dbSNP
rs981068254 1372 dbSNP
rs147013400 1376 dbSNP
rs867956698 1376 dbSNP
rs1278474510 1378 dbSNP
rs1472467543 1378 dbSNP
rs1180655634 1379 dbSNP
rs1258358798 1387 dbSNP
rs1217618825 1394 dbSNP
rs1338233940 1402 dbSNP
rs1285738671 1404 dbSNP
rs980996966 1412 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545215. RNA binding protein: AGO4. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' cgucGGUCGAGAUGGGGGCGGu 5'
              ||  : ||::||||||| 
Target 5' ----CCUCUCCUGUCCCCGCCg 3'
1 - 18
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545215
Method / RBP PAR-CLIP / AGO4
Cell line / Condition HEK293 / Control
Location of target site ENST00000346329.3 | 3UTR | CCUCUCCUGUCCCCGCCGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
90 hsa-miR-6787-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT449091 XPO6 exportin 6 2 2
MIRT449991 PSMG1 proteasome assembly chaperone 1 2 2
MIRT454608 MYADM myeloid associated differentiation marker 2 2
MIRT456116 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT457064 TOR4A torsin family 4 member A 2 2
MIRT461023 SDF4 stromal cell derived factor 4 2 2
MIRT467197 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT471711 OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 2 2
MIRT472566 NACC1 nucleus accumbens associated 1 2 2
MIRT476079 GRB2 growth factor receptor bound protein 2 2 2
MIRT480150 CALR calreticulin 2 2
MIRT483027 KHSRP KH-type splicing regulatory protein 2 4
MIRT483498 STMN3 stathmin 3 2 4
MIRT483728 THSD4 thrombospondin type 1 domain containing 4 2 2
MIRT484550 BARHL1 BarH like homeobox 1 2 6
MIRT484684 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT486059 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT486116 INO80E INO80 complex subunit E 2 2
MIRT486313 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486525 CLCN7 chloride voltage-gated channel 7 2 2
MIRT486857 DPF1 double PHD fingers 1 2 2
MIRT487352 PHF15 jade family PHD finger 2 1 1
MIRT487582 FAM83H family with sequence similarity 83 member H 2 4
MIRT487792 GPR20 G protein-coupled receptor 20 2 4
MIRT488104 POU3F1 POU class 3 homeobox 1 2 2
MIRT488786 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT489361 SYNGR1 synaptogyrin 1 2 4
MIRT489387 RAB11B RAB11B, member RAS oncogene family 2 2
MIRT489680 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT489731 GNAI2 G protein subunit alpha i2 2 4
MIRT489750 TACC3 transforming acidic coiled-coil containing protein 3 2 2
MIRT490029 PCSK4 proprotein convertase subtilisin/kexin type 4 2 2
MIRT490379 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT490580 SLC47A1 solute carrier family 47 member 1 2 2
MIRT490753 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT491187 JUND JunD proto-oncogene, AP-1 transcription factor subunit 2 4
MIRT491301 VGF VGF nerve growth factor inducible 2 2
MIRT491462 HOXB8 homeobox B8 2 2
MIRT491702 PDZD4 PDZ domain containing 4 2 2
MIRT491724 RTN4R reticulon 4 receptor 2 2
MIRT491737 SEMA3F semaphorin 3F 2 2
MIRT491984 UNK unkempt family zinc finger 2 2
MIRT492844 NRGN neurogranin 2 2
MIRT492936 NEUROD2 neuronal differentiation 2 2 4
MIRT493713 H2AFX H2A histone family member X 2 2
MIRT494623 ASB6 ankyrin repeat and SOCS box containing 6 2 4
MIRT494703 ARHGAP31 Rho GTPase activating protein 31 2 2
MIRT495602 NKX2-5 NK2 homeobox 5 2 2
MIRT495750 PDE4C phosphodiesterase 4C 2 4
MIRT500367 ZNF385A zinc finger protein 385A 2 2
MIRT501161 SLC10A7 solute carrier family 10 member 7 2 6
MIRT501702 PCGF3 polycomb group ring finger 3 2 6
MIRT504922 PDRG1 p53 and DNA damage regulated 1 2 2
MIRT517945 TRIM59 tripartite motif containing 59 2 2
MIRT524212 DDI2 DNA damage inducible 1 homolog 2 2 6
MIRT531186 SIGLEC12 sialic acid binding Ig like lectin 12 (gene/pseudogene) 2 2
MIRT531972 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT558055 EVI5L ecotropic viral integration site 5 like 2 2
MIRT560482 LACE1 AFG1 like ATPase 2 2
MIRT563217 FXN frataxin 2 2
MIRT569095 FSCN1 fascin actin-bundling protein 1 2 2
MIRT569522 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 2
MIRT569531 CTTN cortactin 2 2
MIRT569848 RGS5 regulator of G protein signaling 5 2 2
MIRT570738 ANKRD52 ankyrin repeat domain 52 2 2
MIRT574140 MARVELD1 MARVEL domain containing 1 2 2
MIRT615994 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 2 2
MIRT628493 ZNF556 zinc finger protein 556 2 2
MIRT633451 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT649054 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649340 HEXA hexosaminidase subunit alpha 2 2
MIRT670226 PTCHD1 patched domain containing 1 2 2
MIRT670666 KIAA1551 KIAA1551 2 2
MIRT671452 CDH7 cadherin 7 2 2
MIRT671729 ZNF451 zinc finger protein 451 2 2
MIRT690285 ZNF154 zinc finger protein 154 2 2
MIRT700575 PRSS22 protease, serine 22 2 2
MIRT701411 NKRF NFKB repressing factor 2 2
MIRT711877 VASP vasodilator stimulated phosphoprotein 2 2
MIRT712082 UNC13A unc-13 homolog A 2 2
MIRT712523 CYTH2 cytohesin 2 2 2
MIRT712751 GMDS GDP-mannose 4,6-dehydratase 2 2
MIRT714681 PRX periaxin 2 2
MIRT714718 VPS8 VPS8, CORVET complex subunit 2 2
MIRT717508 HRNR hornerin 2 2
MIRT717650 THBS2 thrombospondin 2 2 2
MIRT719592 PIAS4 protein inhibitor of activated STAT 4 2 2
MIRT720521 PTGR2 prostaglandin reductase 2 2 2
MIRT721295 C3orf36 chromosome 3 open reading frame 36 2 2
MIRT724922 VPS18 VPS18, CORVET/HOPS core subunit 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6787 Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-6787-5p Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-6787-5p Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-6787-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-6787-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6787-5p Tamoxifen 2733525 NSC180973 approved sensitive cell line (LCC2)
hsa-miR-6787-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-6787-5p Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-6787-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-6787-5p Docetaxel+Cisplatin+5-Fluorouracil resistant tissue (hypopharyngeal squamous cell carcinoma)

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