pre-miRNA Information
pre-miRNA hsa-mir-3622a   
Genomic Coordinates chr8: 27701677 - 27701759
Description Homo sapiens miR-3622a stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3622a-5p
Sequence 14| CAGGCACGGGAGCUCAGGUGAG |35
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 8 + 27701691 29233923 MiREDiBase
A-to-I 6 8 + 27701695 29233923 MiREDiBase
A-to-I 16 8 + 27701705 28550310, 29233923 MiREDiBase
A-to-I 21 8 + 27701710 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs551845360 1 dbSNP
rs946438979 3 dbSNP
rs1044808718 7 dbSNP
rs66683138 8 dbSNP
rs1157333896 10 dbSNP
rs1439657384 12 dbSNP
rs530939348 17 dbSNP
rs1232922758 20 dbSNP
rs1448152954 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol C3orf62   
Synonyms -
Description chromosome 3 open reading frame 62
Transcript NM_198562   
Expression
Putative miRNA Targets on C3orf62
3'UTR of C3orf62
(miRNA target sites are highlighted)
>C3orf62|NM_198562|3'UTR
   1 GGACAGTTATCTAAGCTTTGATTCCTTACAGCAGGAGGCTGCCCTTGAGCCTGAGCAGAAGCAGCTACAATGGCCGTCAG
  81 GGGCCACATTTCTCAAAAGGTTGGCAGAACCTGAATTACCAGACCCTTTTTAAATCCCAGTTGTGTCCCTTTTTAAGCTG
 161 TGAGACCAGTTTTTTGAATTCCATTGCTTTGAAATGTTTCCTATTACTGATTTTTTTTTTTAACTTTCCTTGACATCTTG
 241 AATGTGTTTTTTTGATTGATGTTCAATATACCCAGTACCCATGGTAGGTGTGGGTCATGGGCCTCTGCTGTGTCTCTTAG
 321 TGTTCTTTTCCACGGGCCCCTAAAAAAGTACAGGAGTGGCCAGGCACAGTGGCTCACGTCTGTAATCCCAGCACTTTGGG
 401 AGGCCAAGGCGAGTGGATCACTTGAGGTTAGGAGTTTGAGACCAGCCTGGCCAACATGGCGAAACCCCATCTCCACTAAA
 481 AATACAAAAATTAGCCAGGAGTGGTGGTGTGCACCTGTAGTCCCAGCTACTTTGGAGGCTGAGGTAGGAGAATTGCTTGA
 561 ACCTGGAGGCGGAGGTTGCAATGAGCCGAGATGGCACCGCTCCCCTCCATCCTGAGTGACAGAGCAAGACTCTGTCTCAA
 641 AAAAATAATAATTTAGCTGGTCATGGTGGTTCGTGCCTGTAGTTCCAGCTACTTGGGTAGGGACTGAGGCGAAAGGATCA
 721 CTTGAGGCCAGGAGGCAGAGATTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCATGAGTGACAGAGTGAGACCCTG
 801 TCTCAAAAAAAAAAAGAAAAAAAAAGGGAAGAAAGGAAACTGAATCTCAGGGAAGTGCCCACCTCCTGAGCTAATAAGAG
 881 GAAGGAATATGGGGGTGAGGCAGAGCTGGCAAAAGGCTGTTTTTTGTTTTGATTGTTTTTAAAGACCAAGTGAAGTATAG
 961 TATAAGAAGTGGGGAAGGAGTGGAACAAGGAGTTAGATCTGTAACTGTGAGTAGTCAATTGAGATAACTCAATACCTTTG
1041 GACCTGATTGTTTTTAAAGACTGAGGGTAGTATAAGAAGAGGGGAAGGAGTAGAACAAGGAGTTAGATCTGAAACTGTGA
1121 GTAGTCGATTGAGATAACTCACTACCTTTGGACCAGCCAGGGCTGTTTATAAGTGCTAAAGCCCGAACAAACCAAAGAGT
1201 TGGGGAGAAAGGCCTAACTAACAGCTGAGTGATTGTCTAACAGACTGTCTTTTAGGCCAGTGACTCTGGCATAGGGCAGG
1281 CTGCATAGCCAGCAACATCCCTTACCACAGGTCTAGTGATTCCTCTGGGCTCAAATGTGGAGGCTACACACCCACTCCTT
1361 AGCAGAGGTTGGCCTGGCACCTGCTGGTGCCCCAAGAACTATGGCATGGTTAGACCCTGGCCACTTGATTGCATGTGCCT
1441 CCCCAGTGGGCGTGCCCTGGTTCCCAACCAGTTGTGGCCACTGCCACTGCCCTGCCTGGGGCAGGAGTTGAGGTTAAGGC
1521 TAACTACAGGCTCCTTCCAGGCCACCTACCACTCAGACCCTGCAGGAGGTAGCACAAAGCATTCACAGCCTGTGGAGTCA
1601 GAGGCCAATTTCTTCTCCCTGAGCAAGAAGAATGGAAGCAAATGAAAAGTGCTCACAGTATGCTCAACTGCCCCTGCTCA
1681 GGTGAAGAATAGCCTGTCTGGATGGAGAGATGTCAGGCTACTTGATACTCAGAAAAACAGGTCTCAAAACAGTGCCTTCC
1761 AAATAATACATGTGGATGTGGACACTCTTCTATAGACGAGGTGGAGCTTAATTCCTGTCCTTACCCCCATATTCCCACCT
1841 CATTACCACCCTTTGAAGGTGAACTAGACTTAATGATACTTCCCACGACTAAAGTAGGGAAAGGGAAAAGTCACAAACTT
1921 ATAGTGGGGAAGCCTGGCAGACACCTAACCAAGTGATGTCATGTATATGTCATGAGAGGGGTGCATCACTTCCCTGGTAT
2001 TCCTACCAAAAACCCAAATTCCCAGTGTATGATCTTGAGACAAATGTTAGACAAATCCAGACGTGGGGTACATTCTACAA
2081 GATACCTGGCCAGAACTCAAGACTGTTGAGATGGCCGGGTGCAGTGGCTCATGCCTATAATCCCCGACACTTTGGGAGGC
2161 TGAGGCGGGCAGATCACTTGAGGTCAGAAGTTCGAGACCAGCCTGGCAAACATGGTGAAACCCCATCTCTGCTAAAAATA
2241 CAAAAATTAGCCAGGCATCATGGCATGTGCCTTTAGTCATAGCTACACAGGAGGCTGAGGCAGGAGAATTGCTTGAACCC
2321 AGGAGGTGGAGGTTGCAGTGAGCCAAGATCGCATCACTGCACTCCAGCCTGGGCAACAAGCAAGACTCCACCTCAAAAAG
2401 AAAAAAAAAGACTGTTGAGGTCATGAAAAATAAGGAAAGACTCAAAAACTATCAACAGACCACTAAAGACCAAGAAGACA
2481 CAATGGCTAAATGCAACATGGAATCCTGGAGTGCATCCTGGAAGAGAAAGAGAACATTATTGGAAAAACTGATAAAACTT
2561 GAATAAAAACTAGTGTTTAATGT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaGUGGACUCGAGGGCACGGAc 5'
            |||:||| : | :|||||| 
Target 5' gcCACTTGATTGCATGTGCCTc 3'
1420 - 1441 152.00 -19.10
2
miRNA  3' gaguGGACUCGAGGGCACGGAc 5'
              | ||:   ::||||||| 
Target 5' tggtCATGGTGGTTCGTGCCTg 3'
658 - 679 146.00 -19.40
3
miRNA  3' gaGUGG-ACUCGAGGGCACGGAc 5'
            ||:| ||:   | :|||||| 
Target 5' ggCATCATGG---CATGTGCCTt 3'
2254 - 2273 133.00 -16.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30501221 73 COSMIC
COSN30452511 76 COSMIC
COSN30180183 118 COSMIC
COSN14070235 127 COSMIC
COSN15997546 141 COSMIC
COSN17294857 181 COSMIC
COSN27202072 211 COSMIC
COSN6769446 334 COSMIC
COSN17183729 408 COSMIC
COSN25662660 484 COSMIC
COSN22981883 711 COSMIC
COSN30442643 1690 COSMIC
COSN1278012 1766 COSMIC
COSN28893049 1981 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs768758168 1 dbSNP
rs1303321996 6 dbSNP
rs760509674 8 dbSNP
rs775374041 11 dbSNP
rs552018660 12 dbSNP
rs746104541 24 dbSNP
rs377448076 28 dbSNP
rs770983130 29 dbSNP
rs749419668 31 dbSNP
rs1257338626 35 dbSNP
rs539474343 38 dbSNP
rs1479931536 44 dbSNP
rs756638064 46 dbSNP
rs1322274571 56 dbSNP
rs868362670 58 dbSNP
rs1204360632 70 dbSNP
rs1442715196 73 dbSNP
rs1007386943 75 dbSNP
rs914889789 76 dbSNP
rs889061736 85 dbSNP
rs754873789 86 dbSNP
rs536809501 88 dbSNP
rs923810982 98 dbSNP
rs981929829 99 dbSNP
rs971229294 103 dbSNP
rs1241944774 117 dbSNP
rs1403197955 124 dbSNP
rs765426839 125 dbSNP
rs1023692104 134 dbSNP
rs1320796191 138 dbSNP
rs551129883 144 dbSNP
rs1410954749 160 dbSNP
rs1041362660 164 dbSNP
rs1303101927 166 dbSNP
rs1329960333 167 dbSNP
rs529397636 176 dbSNP
rs757483526 176 dbSNP
rs1026934375 183 dbSNP
rs994417260 202 dbSNP
rs897365680 221 dbSNP
rs1008364578 222 dbSNP
rs1041616473 222 dbSNP
rs1307292117 223 dbSNP
rs1229809399 224 dbSNP
rs1349022958 240 dbSNP
rs890218316 246 dbSNP
rs1378351782 254 dbSNP
rs1475192279 254 dbSNP
rs561115619 255 dbSNP
rs914314379 258 dbSNP
rs931704609 259 dbSNP
rs1457454869 261 dbSNP
rs893512718 261 dbSNP
rs1345818997 266 dbSNP
rs1054390956 268 dbSNP
rs938173950 271 dbSNP
rs1161557120 284 dbSNP
rs926759847 299 dbSNP
rs1433873683 300 dbSNP
rs548912831 316 dbSNP
rs1409552064 331 dbSNP
rs982398711 333 dbSNP
rs527446074 334 dbSNP
rs1228884277 335 dbSNP
rs1264701800 352 dbSNP
rs923848550 356 dbSNP
rs1269346000 364 dbSNP
rs982367079 370 dbSNP
rs919263353 376 dbSNP
rs754166845 377 dbSNP
rs963466432 378 dbSNP
rs1186864623 382 dbSNP
rs1250136261 391 dbSNP
rs1450411383 392 dbSNP
rs560208865 394 dbSNP
rs1163322847 411 dbSNP
rs1260733421 415 dbSNP
rs916382877 440 dbSNP
rs990893811 443 dbSNP
rs952795315 448 dbSNP
rs1016290696 456 dbSNP
rs1456254980 458 dbSNP
rs1318055697 460 dbSNP
rs986395012 461 dbSNP
rs1224474826 463 dbSNP
rs953259126 465 dbSNP
rs1030552569 466 dbSNP
rs1299854294 476 dbSNP
rs997442420 479 dbSNP
rs545266548 498 dbSNP
rs972673796 511 dbSNP
rs1265990465 519 dbSNP
rs903097465 530 dbSNP
rs1362763029 533 dbSNP
rs1328487493 544 dbSNP
rs1206914652 545 dbSNP
rs1019994484 550 dbSNP
rs1465510177 555 dbSNP
rs961941421 556 dbSNP
rs1011233177 557 dbSNP
rs1425947461 563 dbSNP
rs577250090 568 dbSNP
rs1363744890 569 dbSNP
rs185733885 570 dbSNP
rs543948087 571 dbSNP
rs1390259477 575 dbSNP
rs1457425774 578 dbSNP
rs112370052 581 dbSNP
rs905367842 587 dbSNP
rs555401706 588 dbSNP
rs534146492 591 dbSNP
rs573358669 598 dbSNP
rs1313266244 599 dbSNP
rs144694808 603 dbSNP
rs919502523 604 dbSNP
rs141330633 607 dbSNP
rs1290255740 613 dbSNP
rs1329981730 636 dbSNP
rs566276166 646 dbSNP
rs1432470000 653 dbSNP
rs1261891828 662 dbSNP
rs1254515815 664 dbSNP
rs893522906 672 dbSNP
rs146603295 673 dbSNP
rs368066415 679 dbSNP
rs1251634197 683 dbSNP
rs1463301809 688 dbSNP
rs1471881025 702 dbSNP
rs1267079193 710 dbSNP
rs934984701 711 dbSNP
rs1472652523 716 dbSNP
rs180688401 717 dbSNP
rs1375582953 740 dbSNP
rs11130187 741 dbSNP
rs1369761119 749 dbSNP
rs953555108 761 dbSNP
rs1254567402 762 dbSNP
rs1407897956 767 dbSNP
rs916454006 769 dbSNP
rs1351136123 778 dbSNP
rs1030201241 788 dbSNP
rs1233229177 796 dbSNP
rs1327522800 804 dbSNP
rs1207874470 816 dbSNP
rs1234293845 816 dbSNP
rs1314160080 816 dbSNP
rs1482294088 816 dbSNP
rs879389086 816 dbSNP
rs1299964920 819 dbSNP
rs1264731211 826 dbSNP
rs551648533 826 dbSNP
rs771064466 826 dbSNP
rs990573077 826 dbSNP
rs1173932806 828 dbSNP
rs188480367 843 dbSNP
rs967315631 847 dbSNP
rs1020194027 852 dbSNP
rs547041582 856 dbSNP
rs973160745 892 dbSNP
rs751734752 894 dbSNP
rs892819241 898 dbSNP
rs1486110747 901 dbSNP
rs1170336340 909 dbSNP
rs1364484811 915 dbSNP
rs1371075144 920 dbSNP
rs1034395875 926 dbSNP
rs1435757220 927 dbSNP
rs1291828569 930 dbSNP
rs1020018370 936 dbSNP
rs987103133 955 dbSNP
rs954441092 956 dbSNP
rs1204507619 958 dbSNP
rs1028499775 960 dbSNP
rs1397938456 963 dbSNP
rs1011720430 970 dbSNP
rs527518719 982 dbSNP
rs1220054072 992 dbSNP
rs1244450792 992 dbSNP
rs1489187144 995 dbSNP
rs1193835733 998 dbSNP
rs768013000 1002 dbSNP
rs759984571 1007 dbSNP
rs1465545562 1008 dbSNP
rs1190268175 1010 dbSNP
rs773812309 1017 dbSNP
rs893574785 1018 dbSNP
rs1169997096 1032 dbSNP
rs1351651229 1033 dbSNP
rs1462039689 1039 dbSNP
rs1320077281 1046 dbSNP
rs949544066 1048 dbSNP
rs898106956 1067 dbSNP
rs1036593599 1070 dbSNP
rs999664294 1072 dbSNP
rs771909248 1073 dbSNP
rs1378959732 1079 dbSNP
rs865907097 1099 dbSNP
rs1227055301 1112 dbSNP
rs1292679135 1121 dbSNP
rs1322931448 1122 dbSNP
rs1447160366 1126 dbSNP
rs1213784623 1127 dbSNP
rs770467932 1137 dbSNP
rs1246802559 1154 dbSNP
rs902207256 1155 dbSNP
rs1187827253 1165 dbSNP
rs1463244575 1166 dbSNP
rs942260123 1184 dbSNP
rs909225072 1185 dbSNP
rs1472363354 1191 dbSNP
rs145829132 1194 dbSNP
rs1415896564 1198 dbSNP
rs551427045 1202 dbSNP
rs1158510739 1204 dbSNP
rs1262249412 1207 dbSNP
rs1277423523 1212 dbSNP
rs1013505423 1220 dbSNP
rs764396186 1223 dbSNP
rs932117113 1230 dbSNP
rs1319251576 1245 dbSNP
rs1226785633 1249 dbSNP
rs149007013 1272 dbSNP
rs117198029 1273 dbSNP
rs1446285775 1278 dbSNP
rs1315749930 1285 dbSNP
rs748916659 1286 dbSNP
rs543815877 1304 dbSNP
rs967220936 1307 dbSNP
rs1247334124 1308 dbSNP
rs1054897314 1311 dbSNP
rs1287135498 1323 dbSNP
rs931123283 1329 dbSNP
rs919739668 1331 dbSNP
rs573267905 1336 dbSNP
rs1441579621 1348 dbSNP
rs990073783 1352 dbSNP
rs1207745530 1362 dbSNP
rs957476202 1388 dbSNP
rs1239051648 1391 dbSNP
rs1034058120 1392 dbSNP
rs772906056 1399 dbSNP
rs1395218716 1414 dbSNP
rs1370890822 1415 dbSNP
rs1473631046 1433 dbSNP
rs532443066 1434 dbSNP
rs1424739516 1435 dbSNP
rs561651373 1444 dbSNP
rs1413038747 1446 dbSNP
rs1336523664 1450 dbSNP
rs747907660 1451 dbSNP
rs540301702 1452 dbSNP
rs1389073346 1455 dbSNP
rs573394263 1465 dbSNP
rs1473596351 1471 dbSNP
rs912605116 1483 dbSNP
rs1343842372 1484 dbSNP
rs1186338301 1487 dbSNP
rs184147448 1490 dbSNP
rs1217153171 1494 dbSNP
rs1280444162 1498 dbSNP
rs1483604283 1500 dbSNP
rs1204300078 1505 dbSNP
rs546568707 1511 dbSNP
rs1484043896 1513 dbSNP
rs1182601263 1517 dbSNP
rs1246241711 1518 dbSNP
rs1477150155 1534 dbSNP
rs1036457786 1537 dbSNP
rs1006433458 1542 dbSNP
rs1174560040 1545 dbSNP
rs1203652221 1549 dbSNP
rs954287824 1551 dbSNP
rs1483008774 1559 dbSNP
rs921489335 1562 dbSNP
rs576013795 1566 dbSNP
rs1392553205 1568 dbSNP
rs1328907598 1569 dbSNP
rs1211687176 1573 dbSNP
rs1330048866 1579 dbSNP
rs748042703 1582 dbSNP
rs1354575229 1584 dbSNP
rs957549889 1588 dbSNP
rs1348243756 1593 dbSNP
rs1227409509 1594 dbSNP
rs557650867 1606 dbSNP
rs1031831127 1612 dbSNP
rs1239986714 1616 dbSNP
rs778874860 1619 dbSNP
rs780860186 1633 dbSNP
rs1196362320 1638 dbSNP
rs1050477142 1643 dbSNP
rs1449972424 1646 dbSNP
rs191893248 1649 dbSNP
rs1289963881 1654 dbSNP
rs1449159135 1665 dbSNP
rs999317925 1670 dbSNP
rs114753442 1673 dbSNP
rs1462922430 1681 dbSNP
rs768585446 1693 dbSNP
rs1013641800 1694 dbSNP
rs1371260389 1696 dbSNP
rs895084451 1696 dbSNP
rs1369836815 1697 dbSNP
rs1295101452 1721 dbSNP
rs1328004050 1722 dbSNP
rs1054988381 1725 dbSNP
rs1323699984 1727 dbSNP
rs995368190 1738 dbSNP
rs898366885 1750 dbSNP
rs1215625026 1753 dbSNP
rs1037267566 1757 dbSNP
rs1040493369 1759 dbSNP
rs1464592287 1763 dbSNP
rs1207110877 1771 dbSNP
rs1387900922 1778 dbSNP
rs1429510491 1785 dbSNP
rs940124431 1787 dbSNP
rs1474091415 1792 dbSNP
rs754782496 1792 dbSNP
rs913072135 1797 dbSNP
rs912606091 1798 dbSNP
rs989980347 1801 dbSNP
rs932617160 1802 dbSNP
rs921247676 1808 dbSNP
rs1311815164 1813 dbSNP
rs1338625791 1824 dbSNP
rs990430022 1828 dbSNP
rs1328606502 1829 dbSNP
rs1226752571 1839 dbSNP
rs957602407 1847 dbSNP
rs553222019 1848 dbSNP
rs1486363745 1864 dbSNP
rs924844011 1865 dbSNP
rs1254594465 1870 dbSNP
rs1486922544 1875 dbSNP
rs1189299895 1880 dbSNP
rs957345019 1884 dbSNP
rs1414726481 1886 dbSNP
rs535108868 1887 dbSNP
rs966499164 1893 dbSNP
rs1472575131 1903 dbSNP
rs1025121208 1910 dbSNP
rs1247780533 1914 dbSNP
rs1313437707 1916 dbSNP
rs1013267877 1919 dbSNP
rs979817472 1922 dbSNP
rs1408092700 1924 dbSNP
rs1309316404 1930 dbSNP
rs971490727 1933 dbSNP
rs959057294 1934 dbSNP
rs1224366863 1938 dbSNP
rs1449974616 1943 dbSNP
rs1289160915 1949 dbSNP
rs566596215 1952 dbSNP
rs993887689 1956 dbSNP
rs1212141883 1959 dbSNP
rs961074883 1966 dbSNP
rs1331472463 1969 dbSNP
rs551163912 1971 dbSNP
rs779118130 1980 dbSNP
rs1174972659 1983 dbSNP
rs1033297312 1996 dbSNP
rs1226319374 2005 dbSNP
rs1349596807 2009 dbSNP
rs1275397433 2013 dbSNP
rs995420683 2017 dbSNP
rs1436356027 2031 dbSNP
rs1174118501 2035 dbSNP
rs1006785567 2037 dbSNP
rs1015436619 2040 dbSNP
rs1004427470 2045 dbSNP
rs1038247919 2057 dbSNP
rs1386387480 2057 dbSNP
rs888057221 2061 dbSNP
rs1051133825 2062 dbSNP
rs1373573887 2063 dbSNP
rs1235466521 2065 dbSNP
rs190155519 2066 dbSNP
rs996419941 2068 dbSNP
rs1274458563 2072 dbSNP
rs1322291765 2081 dbSNP
rs1207307904 2083 dbSNP
rs1051639790 2088 dbSNP
rs1480689188 2101 dbSNP
rs1190202867 2102 dbSNP
rs535860926 2104 dbSNP
rs932710562 2112 dbSNP
rs1390347233 2116 dbSNP
rs901844589 2117 dbSNP
rs1389368293 2124 dbSNP
rs1408118504 2142 dbSNP
rs1457069215 2145 dbSNP
rs371636254 2149 dbSNP
rs1426268348 2150 dbSNP
rs528910844 2159 dbSNP
rs1193433787 2166 dbSNP
rs1477316329 2167 dbSNP
rs1396952244 2173 dbSNP
rs1441965699 2180 dbSNP
rs757471916 2193 dbSNP
rs1363488895 2194 dbSNP
rs868454772 2198 dbSNP
rs149761192 2223 dbSNP
rs936245168 2235 dbSNP
rs1307511025 2239 dbSNP
rs924828022 2248 dbSNP
rs754111794 2254 dbSNP
rs753656715 2256 dbSNP
rs1469510406 2265 dbSNP
rs376854522 2269 dbSNP
rs935818760 2271 dbSNP
rs1247131591 2278 dbSNP
rs1474306458 2287 dbSNP
rs571601429 2293 dbSNP
rs927118802 2297 dbSNP
rs539996339 2300 dbSNP
rs1188139883 2303 dbSNP
rs917408701 2310 dbSNP
rs991902222 2313 dbSNP
rs1162839212 2320 dbSNP
rs185064542 2323 dbSNP
rs1246446285 2326 dbSNP
rs1320174989 2333 dbSNP
rs1343737577 2334 dbSNP
rs34780694 2335 dbSNP
rs193171374 2337 dbSNP
rs756306403 2340 dbSNP
rs1379078991 2344 dbSNP
rs962672929 2348 dbSNP
rs972361972 2350 dbSNP
rs961138015 2351 dbSNP
rs1233481796 2358 dbSNP
rs1267116711 2362 dbSNP
rs1444980977 2365 dbSNP
rs1217671022 2373 dbSNP
rs1015905537 2381 dbSNP
rs1004116864 2386 dbSNP
rs890982454 2391 dbSNP
rs1220933374 2392 dbSNP
rs1342780949 2393 dbSNP
rs1273775433 2394 dbSNP
rs1435163482 2400 dbSNP
rs1029489972 2405 dbSNP
rs546433704 2408 dbSNP
rs1406049873 2410 dbSNP
rs996973698 2410 dbSNP
rs1160251272 2426 dbSNP
rs1016628021 2434 dbSNP
rs1413424502 2437 dbSNP
rs1315396232 2438 dbSNP
rs1356751251 2458 dbSNP
rs1414849686 2464 dbSNP
rs899879556 2496 dbSNP
rs983860510 2501 dbSNP
rs757491243 2515 dbSNP
rs952332450 2540 dbSNP
rs575876695 2553 dbSNP
rs996840873 2557 dbSNP
rs751653129 2558 dbSNP
rs1042389107 2560 dbSNP
rs1485993884 2563 dbSNP
rs1413303265 2565 dbSNP
rs1018995691 2566 dbSNP
rs1010222054 2570 dbSNP
rs1471269231 2571 dbSNP
rs891913643 2576 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545215. RNA binding protein: AGO4. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gaguggACUCGAGGGCACGGAc 5'
                ||:   ::||||||| 
Target 5' ------UGGUGGUUCGUGCCU- 3'
1 - 15
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545215
Method / RBP PAR-CLIP / AGO4
Cell line / Condition HEK293 / Control
Location of target site ENST00000343010.3 | 3UTR | UGGUGGUUCGUGCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
THCA -0.479 0.11 -0.310 0.23 8 Click to see details
THCA -0.479 0.11 -0.310 0.23 8 Click to see details
THCA -0.479 0.11 -0.310 0.23 8 Click to see details
THCA -0.479 0.11 -0.310 0.23 8 Click to see details
THCA -0.479 0.11 -0.310 0.23 8 Click to see details
THCA -0.479 0.11 -0.310 0.23 8 Click to see details
THCA -0.479 0.11 -0.310 0.23 8 Click to see details
61 hsa-miR-3622a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT166678 ZSWIM6 zinc finger SWIM-type containing 6 2 2
MIRT452081 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT457039 S1PR3 sphingosine-1-phosphate receptor 3 2 2
MIRT471975 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474065 LMNB2 lamin B2 2 2
MIRT475862 H6PD hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase 2 2
MIRT476191 GOLGA8A golgin A8 family member A 2 2
MIRT476521 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT483046 C15orf52 chromosome 15 open reading frame 52 2 4
MIRT495541 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT495892 CLOCK clock circadian regulator 2 2
MIRT495992 LTBP2 latent transforming growth factor beta binding protein 2 2 2
MIRT496001 EMP1 epithelial membrane protein 1 2 2
MIRT496208 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT496427 ACTRT3 actin related protein T3 2 2
MIRT496438 ZNF704 zinc finger protein 704 2 2
MIRT496473 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT496555 TBX15 T-box 15 2 2
MIRT497202 CECR1 adenosine deaminase 2 2 2
MIRT507632 CREBZF CREB/ATF bZIP transcription factor 2 2
MIRT513377 MGAT4A mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A 2 2
MIRT523460 GOLGA8J golgin A8 family member J 2 2
MIRT523465 GOLGA8I golgin A8 family member I, pseudogene 1 1
MIRT526049 GMDS GDP-mannose 4,6-dehydratase 2 2
MIRT533122 YIPF4 Yip1 domain family member 4 2 2
MIRT534183 SLC8A1 solute carrier family 8 member A1 2 2
MIRT556618 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT563361 WHSC1 nuclear receptor binding SET domain protein 2 2 2
MIRT563868 FAM206A family with sequence similarity 206 member A 2 2
MIRT564360 PPWD1 peptidylprolyl isomerase domain and WD repeat containing 1 2 2
MIRT564661 ZNF449 zinc finger protein 449 2 2
MIRT564805 ZBTB33 zinc finger and BTB domain containing 33 2 2
MIRT564867 ZBED3 zinc finger BED-type containing 3 2 2
MIRT565340 TMEM104 transmembrane protein 104 2 2
MIRT566439 PHF16 jade family PHD finger 3 2 2
MIRT567587 FCHSD2 FCH and double SH3 domains 2 2 2
MIRT569597 C3orf62 chromosome 3 open reading frame 62 2 2
MIRT569700 FMNL3 formin like 3 2 2
MIRT575957 Nanos1 nanos homolog 1 (Drosophila) 2 3
MIRT576516 Slc35e2 solute carrier family 35, member E2 2 2
MIRT608480 RRP36 ribosomal RNA processing 36 2 2
MIRT614335 NANOS1 nanos C2HC-type zinc finger 1 2 3
MIRT630816 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT631708 C1QTNF6 C1q and TNF related 6 2 2
MIRT632369 SRRD SRR1 domain containing 2 2
MIRT633471 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT634478 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 2
MIRT667336 MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like 2 2
MIRT667654 LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase 2 2
MIRT671046 SS18 SS18, nBAF chromatin remodeling complex subunit 2 2
MIRT672823 VEZT vezatin, adherens junctions transmembrane protein 2 2
MIRT673049 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT673435 APAF1 apoptotic peptidase activating factor 1 2 2
MIRT676096 DPP9 dipeptidyl peptidase 9 2 2
MIRT678059 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT679783 GOLGA2 golgin A2 2 2
MIRT684219 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT697642 WRN Werner syndrome RecQ like helicase 2 2
MIRT706595 C1RL complement C1r subcomponent like 2 2
MIRT706603 CCS copper chaperone for superoxide dismutase 2 2
MIRT717647 HLX H2.0 like homeobox 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3622a Doxorubicin 31703 NSC123127 approved resistant High Hepatocellular Carcinoma cell line (HepG2)
hsa-mir-3622a Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-miR-3622a-5p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-3622a-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3622a-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3622a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3622a-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-3622a-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-3622a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)
hsa-miR-3622a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3622a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-3622a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-3622a-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (Panc1-GR3)
hsa-miR-3622a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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