Gene Symbol |
PCSK9
|
Synonyms |
FH3, HCHOLA3, LDLCQ1, NARC-1, NARC1, PC9 |
Description |
proprotein convertase subtilisin/kexin type 9 |
Transcript |
NM_174936
|
Expression |
|
Putative miRNA Targets on PCSK9 |
|
3'UTR of PCSK9 (miRNA target sites are highlighted) |
>PCSK9|NM_174936|3'UTR
1 CAGCCCCATCCCAGGATGGGTGTCTGGGGAGGGTCAAGGGCTGGGGCTGAGCTTTAAAATGGTTCCGACTTGTCCCTCTC
81 TCAGCCCTCCATGGCCTGGCACGAGGGGATGGGGATGCTTCCGCCTTTCCGGGGCTGCTGGCCTGGCCCTTGAGTGGGGC
161 AGCCTCCTTGCCTGGAACTCACTCACTCTGGGTGCCTCCTCCCCAGGTGGAGGTGCCAGGAAGCTCCCTCCCTCACTGTG
241 GGGCATTTCACCATTCAAACAGGTCGAGCTGTGCTCGGGTGCTGCCAGCTGCTCCCAATGTGCCGATGTCCGTGGGCAGA
321 ATGACTTTTATTGAGCTCTTGTTCCGTGCCAGGCATTCAATCCTCAGGTCTCCACCAAGGAGGCAGGATTCTTCCCATGG
401 ATAGGGGAGGGGGCGGTAGGGGCTGCAGGGACAAACATCGTTGGGGGGTGAGTGTGAAAGGTGCTGATGGCCCTCATCTC
481 CAGCTAACTGTGGAGAAGCCCCTGGGGGCTCCCTGATTAATGGAGGCTTAGCTTTCTGGATGGCATCTAGCCAGAGGCTG
561 GAGACAGGTGCGCCCCTGGTGGTCACAGGCTGTGCCTTGGTTTCCTGAGCCACCTTTACTCTGCTCTATGCCAGGCTGTG
641 CTAGCAACACCCAAAGGTGGCCTGCGGGGAGCCATCACCTAGGACTGACTCGGCAGTGTGCAGTGGTGCATGCACTGTCT
721 CAGCCAACCCGCTCCACTACCCGGCAGGGTACACATTCGCACCCCTACTTCACAGAGGAAGAAACCTGGAACCAGAGGGG
801 GCGTGCCTGCCAAGCTCACACAGCAGGAACTGAGCCAGAAACGCAGATTGGGCTGGCTCTGAAGCCAAGCCTCTTCTTAC
881 TTCACCCGGCTGGGCTCCTCATTTTTACGGGTAACAGTGAGGCTGGGAAGGGGAACACAGACCAGGAAGCTCGGTGAGTG
961 ATGGCAGAACGATGCCTGCAGGCATGGAACTTTTTCCGTTATCACCCAGGCCTGATTCACTGGCCTGGCGGAGATGCTTC
1041 TAAGGCATGGTCGGGGGAGAGGGCCAACAACTGTCCCTCCTTGAGCACCAGCCCCACCCAAGCAAGCAGACATTTATCTT
1121 TTGGGTCTGTCCTCTCTGTTGCCTTTTTACAGCCAACTTTTCTAGACCTGTTTTGCTTTTGTAACTTGAAGATATTTATT
1201 CTGGGTTTTGTAGCATTTTTATTAATATGGTGACTTTTTAAAATAAAAACAAACAAACGTTGTCCTAACAAAAAAAAAAA
1281 AAAAAAAAAA
Target sites
Provided by authors
Predicted by miRanda
DRVs
SNPs
DRVs & SNPs
|
miRNA-target interactions (Predicted by miRanda) |
ID |
Duplex structure |
Position |
Score |
MFE |
1
|
miRNA 3' guCUU-AG-GAACG-GACCCACg 5'
||| || || | |||||||
Target 5' tgGAACTCACTCACTCTGGGTGc 3'
|
173 - 195
|
150.00 |
-18.10 |
2
|
miRNA 3' gucUUAGGAA-CGGACCCAcg 5'
:|| :|| :||||||
Target 5' gaaGATATTTATTCTGGGTtt 3'
|
1188 - 1208
|
129.00 |
-10.44 |
3
|
miRNA 3' gucuUAGGAACGGACCCACg 5'
|||| | ||||||
Target 5' ccccATCCCAGGATGGGTGt 3'
|
4 - 23
|
124.00 |
-13.90 |
|
DRVs in gene 3'UTRs |
|
SNPs in gene 3'UTRs |
|