miRTarBase - #MIRT569944


—
pre-miRNA Information
pre-miRNA hsa-mir-4747   
Genomic Coordinates chr19: 4932687 - 4932740
Description Homo sapiens miR-4747 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4747-5p
Sequence 1| AGGGAAGGAGGCUUGGUCUUAG |22
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs560927363 4 dbSNP
rs1471226927 10 dbSNP
rs763137545 12 dbSNP
rs767337154 15 dbSNP
rs775298039 16 dbSNP
rs760472311 19 dbSNP
rs1207950315 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PRRT2   
Synonyms BFIC2, BFIS2, DSPB3, DYT10, EKD1, FICCA, ICCA, IFITMD1, PKC
Description proline rich transmembrane protein 2
Transcript NM_145239   
Expression
Putative miRNA Targets on PRRT2
3'UTR of PRRT2
(miRNA target sites are highlighted)		 
>PRRT2|NM_145239|3'UTR
   1 GGGGCTCTGCCCCGCATCCCAAGACTTTTCTTCCTGTTGGGAGCTGCCTTGGGCCCATCCCTCCCCTGGGGGGAGCCCAA
  81 CTGATGGCCCTGGCCCCCACCCCTAAGGACCAAGGGAGCCTGAGCGGCCTTGTTTACAGCTTCTGTCCTGCTCCTGCATC
 161 TTGCCAGGCTCCTCTGCCAACTGTAGGCCTGCCTCATCCCTGCACTGGTTCCAACCTCCCTGCACTAATGCCTGCATCCC
 241 CTCCGGCCTCTTGGCCCCCTATCCCTGCACTTCTGGAAACCTCCCTGCACTCTGGAAACCTCCCTGAACACCTCCCCAAC
 321 TCTGCGCTCTCAGCCTCCCTGCATCTCTCCTGGCCTCCCTGCACTTCTTCCAGCCCCCCAAATTCTCTGGACCTCCACCC
 401 TGGCCGCCTCCTCCCAACTTTCATTGTCTTGGCATCTCTCAACCCTCAGTCCTCTCTTCCTTCCCTTCTTTATCATCTCC
 481 CCTTTCCTCTCCACGTCCCGCCCCCTTCCTCTTCCTGCCTCCTCATCTCCCTTAAGCATCCTCTTCTCCAACCTCCCGTC
 561 ACCGTTTACTCTGCAAAATTGACAGCACTTAGACGAGGCTTGGGGGCAGGGAGCAGTGTTGGGAGAGGGCTCCCCAACCC
 641 CAGGCTCGGACTGTTCTCTGCTGGGACCACCCAGGGTCGGACACCCAAGGGTGCCTGGCAGGTCGCAGAGTTGGCAAGCC
 721 GGGCCTCGTATGGGGACTCGGGTGAGGGTGGCGAGTACTGGTTCCGAACGCACGCAGGGGAGAAGGGAGGGACGCGGCGC
 801 TGACCCTTCCAGGTCAGCTGGAGTTGACCCGCCCACCTGGGCTTTTCAACCCCAGTCCGCGAGTTTCTTTCTTGAAGGTG
 881 TGGGGGCTAGATTCATTCACGTGCTTCGTAATGAAATAATCCAAAAAATAGGACCAAAGCGCCCACTGGCAGGAGCGAGG
 961 GCGGGGCGCCGCGCTCTATAATTATTTTCTAAGATGATGGGGGAGGTTTGTTGCACGCGACAGCCCGCTGAGGAGGCGGG
1041 GACCGAGCTACAACGCGGTTCGGATTTGGCGGGGGTTTTTTTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAGTCTGGG
1121 GGAAGAAAAAAACTAAAATTCTTAAAAAAAAAAAAAAAAGGCTATTATCAAACTGATTTCTCCCTTTTTGTATGCCGGAT
1201 GCTGCATGAGTCTGAAACACCAATAAACGGAGACTGCATGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1281 AA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gauUCUGGUUCGGAGGAAGGGa 5'
             || ||   |:|||||||| 
Target 5' ctcAGTCCTCTCTTCCTTCCCt 3'
 445 - 466 159.00 -21.60
2 
miRNA  3' gauUCUGGUUCGGAGGAAGGGa 5'
             | ::|  ||| ||||||: 
Target 5' tccACGTCCCGCCCCCTTCCTc 3'
 490 - 511 139.00 -15.50
3 
miRNA  3' gaUUCUGGUUCG-GA---GGAAGGga 5'
            ::|||  :|| ||   ||||||  
Target 5' gaGGGACGCGGCGCTGACCCTTCCag 3'
 787 - 812 132.00 -16.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
378434 12 ClinVar
1200061 56 ClinVar
COSN20051858 4 COSMIC
COSN26990558 11 COSMIC
COSN30524329 14 COSMIC
COSN20078690 15 COSMIC
COSN31519186 24 COSMIC
COSN31486234 77 COSMIC
COSN30532467 86 COSMIC
COSN30185589 123 COSMIC
COSN26990559 125 COSMIC
COSN31574497 144 COSMIC
COSN216839 260 COSMIC
COSN25312321 326 COSMIC
COSN32058361 648 COSMIC
COSN30173217 671 COSMIC
COSN6645288 771 COSMIC
COSN26602999 886 COSMIC
COSN25377005 1035 COSMIC
COSN24925569 1115 COSMIC
COSN28117830 1126 COSMIC
COSN27949235 1142 COSMIC
COSN27425211 1160 COSMIC
COSN27460132 1160 COSMIC
rs10204 580 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs373716171 2 dbSNP
rs754628808 4 dbSNP
rs750772830 10 dbSNP
rs201814968 12 dbSNP
rs958943570 13 dbSNP
rs375179846 14 dbSNP
rs779272799 15 dbSNP
rs750990704 18 dbSNP
rs758380665 22 dbSNP
rs1261217017 23 dbSNP
rs780145405 31 dbSNP
rs1199410329 38 dbSNP
rs747115023 42 dbSNP
rs1436327744 44 dbSNP
rs1201251150 45 dbSNP
rs1247458543 48 dbSNP
rs768812014 49 dbSNP
rs781400401 50 dbSNP
rs747935468 52 dbSNP
rs954283162 54 dbSNP
rs141436390 56 dbSNP
rs1265310377 62 dbSNP
rs930185810 64 dbSNP
rs1258044740 68 dbSNP
rs536838612 70 dbSNP
rs915309003 72 dbSNP
rs983374957 73 dbSNP
rs945385699 74 dbSNP
rs1347630633 91 dbSNP
rs1256204922 94 dbSNP
rs1232018441 106 dbSNP
rs907589860 111 dbSNP
rs748737077 114 dbSNP
rs1376051693 116 dbSNP
rs1039978094 119 dbSNP
rs978077611 121 dbSNP
rs768426046 126 dbSNP
rs555728263 127 dbSNP
rs1470819810 133 dbSNP
rs1402580743 147 dbSNP
rs1171814279 150 dbSNP
rs1465672335 153 dbSNP
rs1376145327 169 dbSNP
rs1440472047 169 dbSNP
rs939587943 172 dbSNP
rs1238072629 175 dbSNP
rs1055716271 181 dbSNP
rs771750988 183 dbSNP
rs1257257762 184 dbSNP
rs763902645 192 dbSNP
rs893060240 198 dbSNP
rs1342416352 203 dbSNP
rs1010041049 207 dbSNP
rs1240200103 218 dbSNP
rs895294186 219 dbSNP
rs573973093 220 dbSNP
rs1209729188 221 dbSNP
rs1048834016 225 dbSNP
rs1490938367 232 dbSNP
rs1200682359 238 dbSNP
rs886181933 242 dbSNP
rs1004544963 245 dbSNP
rs147452651 246 dbSNP
rs901776225 247 dbSNP
rs1300327431 250 dbSNP
rs1420362426 255 dbSNP
rs553405687 258 dbSNP
rs1379720555 259 dbSNP
rs866868022 260 dbSNP
rs1474023491 265 dbSNP
rs958726650 266 dbSNP
rs959215781 272 dbSNP
rs773883043 273 dbSNP
rs1029260145 279 dbSNP
rs1264848066 281 dbSNP
rs577929744 282 dbSNP
rs1283177991 285 dbSNP
rs1229551566 286 dbSNP
rs1011810153 292 dbSNP
rs1283594912 301 dbSNP
rs1161574567 306 dbSNP
rs1367438334 313 dbSNP
rs545497623 316 dbSNP
rs1342198949 323 dbSNP
rs1278636338 326 dbSNP
rs1400798676 327 dbSNP
rs1316244955 329 dbSNP
rs1425225917 333 dbSNP
rs1392037464 340 dbSNP
rs563613260 346 dbSNP
rs1297289536 353 dbSNP
rs1472107858 355 dbSNP
rs1426176796 360 dbSNP
rs1194849817 361 dbSNP
rs1477257737 363 dbSNP
rs1359631515 364 dbSNP
rs1223121418 374 dbSNP
rs1383517315 375 dbSNP
rs1289035104 376 dbSNP
rs982936858 379 dbSNP
rs1319959679 382 dbSNP
rs1278532942 383 dbSNP
rs912725345 386 dbSNP
rs531159923 399 dbSNP
rs1045968 407 dbSNP
rs1331700352 420 dbSNP
rs1438671236 420 dbSNP
rs757428927 421 dbSNP
rs1323004853 422 dbSNP
rs978097319 424 dbSNP
rs975833148 431 dbSNP
rs1403102097 440 dbSNP
rs921582235 446 dbSNP
rs931625556 451 dbSNP
rs1054061052 457 dbSNP
rs927923844 460 dbSNP
rs1192619956 461 dbSNP
rs1478165435 465 dbSNP
rs1245585757 466 dbSNP
rs561289183 467 dbSNP
rs990993241 479 dbSNP
rs1258701497 480 dbSNP
rs991111938 482 dbSNP
rs1223903000 484 dbSNP
rs916805226 484 dbSNP
rs1315884281 488 dbSNP
rs930863003 491 dbSNP
rs1285700034 503 dbSNP
rs1280497069 505 dbSNP
rs1485117840 508 dbSNP
rs1041546882 509 dbSNP
rs1207088542 510 dbSNP
rs746098311 518 dbSNP
rs138569579 522 dbSNP
rs907633026 525 dbSNP
rs1181898186 526 dbSNP
rs940410203 527 dbSNP
rs546845459 530 dbSNP
rs1379756227 531 dbSNP
rs1332677595 543 dbSNP
rs1040028859 544 dbSNP
rs1387174880 556 dbSNP
rs901485743 557 dbSNP
rs894583417 558 dbSNP
rs376303663 559 dbSNP
rs1177875395 563 dbSNP
rs1027409041 566 dbSNP
rs1238919613 569 dbSNP
rs1158001273 575 dbSNP
rs1210573107 576 dbSNP
rs10204 580 dbSNP
rs1455198720 595 dbSNP
rs551490853 596 dbSNP
rs1019767428 603 dbSNP
rs965952879 606 dbSNP
rs1240009327 608 dbSNP
rs1050391574 613 dbSNP
rs1371820787 615 dbSNP
rs1401138281 617 dbSNP
rs527813656 619 dbSNP
rs1011445373 624 dbSNP
rs1450015885 631 dbSNP
rs1358218810 633 dbSNP
rs1316462037 634 dbSNP
rs1020097589 636 dbSNP
rs537291438 638 dbSNP
rs1380330727 639 dbSNP
rs1157530086 642 dbSNP
rs1415945457 644 dbSNP
rs752878183 649 dbSNP
rs1035086930 658 dbSNP
rs960768179 669 dbSNP
rs989733590 671 dbSNP
rs555610108 681 dbSNP
rs1181581673 685 dbSNP
rs1306964262 690 dbSNP
rs991221992 694 dbSNP
rs1315485998 695 dbSNP
rs914259754 700 dbSNP
rs1218457706 709 dbSNP
rs1229238867 716 dbSNP
rs945975704 718 dbSNP
rs1291832423 719 dbSNP
rs1401421718 723 dbSNP
rs916877886 728 dbSNP
rs1202030083 729 dbSNP
rs1244998038 732 dbSNP
rs1451047355 736 dbSNP
rs952357111 742 dbSNP
rs1461857251 744 dbSNP
rs928472186 752 dbSNP
rs1423186684 755 dbSNP
rs984931701 763 dbSNP
rs938473457 766 dbSNP
rs1478896065 767 dbSNP
rs1055651251 770 dbSNP
rs117430740 771 dbSNP
rs144117747 775 dbSNP
rs1267321334 779 dbSNP
rs553267373 780 dbSNP
rs1334804192 783 dbSNP
rs975827638 784 dbSNP
rs1271610665 787 dbSNP
rs887135766 794 dbSNP
rs1004449390 795 dbSNP
rs1380014051 797 dbSNP
rs1159478089 800 dbSNP
rs1293609110 820 dbSNP
rs745754189 828 dbSNP
rs1467860306 829 dbSNP
rs1392227121 832 dbSNP
rs1172522667 834 dbSNP
rs1465979288 835 dbSNP
rs931699879 841 dbSNP
rs1192814502 843 dbSNP
rs1426970413 849 dbSNP
rs1050509522 861 dbSNP
rs1191872629 864 dbSNP
rs1468412733 872 dbSNP
rs1028449279 874 dbSNP
rs1200909830 880 dbSNP
rs1319108035 882 dbSNP
rs953128134 882 dbSNP
rs1224703983 885 dbSNP
rs1445470521 888 dbSNP
rs549042185 894 dbSNP
rs751753087 895 dbSNP
rs1371895226 901 dbSNP
rs1368655153 902 dbSNP
rs947260377 908 dbSNP
rs1041594508 909 dbSNP
rs977134191 910 dbSNP
rs1308091395 917 dbSNP
rs928516238 918 dbSNP
rs1176843965 923 dbSNP
rs760882598 923 dbSNP
rs991282402 930 dbSNP
rs1221877478 934 dbSNP
rs1251667730 936 dbSNP
rs1180990055 944 dbSNP
rs1458610211 952 dbSNP
rs1250207819 954 dbSNP
rs28459735 956 dbSNP
rs1002696915 957 dbSNP
rs1484015643 963 dbSNP
rs550056814 964 dbSNP
rs545049399 969 dbSNP
rs1035137726 972 dbSNP
rs896560084 973 dbSNP
rs887218315 977 dbSNP
rs939985724 977 dbSNP
rs1335125117 979 dbSNP
rs184964471 979 dbSNP
rs1326585338 980 dbSNP
rs901391985 982 dbSNP
rs1046047 990 dbSNP
rs1404618243 991 dbSNP
rs997091117 998 dbSNP
rs1434354215 999 dbSNP
rs575643282 1003 dbSNP
rs1266361787 1004 dbSNP
rs1024022396 1010 dbSNP
rs1440794599 1011 dbSNP
rs1028438031 1015 dbSNP
rs757516596 1020 dbSNP
rs984984190 1022 dbSNP
rs1015110772 1025 dbSNP
rs1425992519 1026 dbSNP
rs1046055 1028 dbSNP
rs1256401005 1031 dbSNP
rs962212455 1035 dbSNP
rs1484506071 1041 dbSNP
rs1287483660 1042 dbSNP
rs1216769809 1043 dbSNP
rs773145769 1046 dbSNP
rs1349835103 1050 dbSNP
rs1277774401 1057 dbSNP
rs565494681 1058 dbSNP
rs10401 1063 dbSNP
rs1167623623 1064 dbSNP
rs905445528 1071 dbSNP
rs1444939500 1073 dbSNP
rs1300087500 1075 dbSNP
rs1401398060 1075 dbSNP
rs1299278249 1076 dbSNP
rs1384864356 1076 dbSNP
rs1474064515 1076 dbSNP
rs868688962 1077 dbSNP
rs1187711042 1082 dbSNP
rs1056660445 1084 dbSNP
rs1193753713 1085 dbSNP
rs1264935909 1085 dbSNP
rs1491568564 1086 dbSNP
rs10569553 1087 dbSNP
rs1164624881 1087 dbSNP
rs1200400155 1087 dbSNP
rs1239823471 1087 dbSNP
rs1280403477 1087 dbSNP
rs1281545221 1087 dbSNP
rs1301264129 1087 dbSNP
rs1316312577 1087 dbSNP
rs1325866916 1087 dbSNP
rs1353761258 1087 dbSNP
rs1395920289 1087 dbSNP
rs1407532908 1087 dbSNP
rs1425311743 1087 dbSNP
rs1452086511 1087 dbSNP
rs1460271480 1087 dbSNP
rs1474880510 1087 dbSNP
rs1491159658 1087 dbSNP
rs763781195 1087 dbSNP
rs778130121 1087 dbSNP
rs894004453 1088 dbSNP
rs1285425018 1090 dbSNP
rs1211583381 1099 dbSNP
rs1319799388 1104 dbSNP
rs1258479012 1108 dbSNP
rs1215313314 1112 dbSNP
rs1339012593 1112 dbSNP
rs1268474101 1113 dbSNP
rs1372360059 1114 dbSNP
rs1438756788 1114 dbSNP
rs1325899202 1115 dbSNP
rs1324454487 1116 dbSNP
rs1330006814 1117 dbSNP
rs1408961636 1118 dbSNP
rs1417009793 1122 dbSNP
rs1454385954 1123 dbSNP
rs1394388293 1124 dbSNP
rs1214215843 1125 dbSNP
rs1459034362 1126 dbSNP
rs892542147 1126 dbSNP
rs1309368902 1127 dbSNP
rs1203624439 1129 dbSNP
rs1011307945 1131 dbSNP
rs1271232222 1132 dbSNP
rs1221006924 1133 dbSNP
rs1009679290 1134 dbSNP
rs1291009929 1134 dbSNP
rs1022716766 1135 dbSNP
rs1379794045 1140 dbSNP
rs903888922 1142 dbSNP
rs1171231325 1144 dbSNP
rs1239004920 1144 dbSNP
rs1408684719 1144 dbSNP
rs1441409436 1144 dbSNP
rs1441986313 1144 dbSNP
rs1468464187 1144 dbSNP
rs537889784 1144 dbSNP
rs71389600 1144 dbSNP
rs74392972 1144 dbSNP
rs75903129 1144 dbSNP
rs775602506 1144 dbSNP
rs1489795896 1157 dbSNP
rs1212428117 1158 dbSNP
rs1201404032 1160 dbSNP
rs1410312461 1162 dbSNP
rs1486140640 1165 dbSNP
rs1279641323 1167 dbSNP
rs1208884505 1174 dbSNP
rs1356428756 1175 dbSNP
rs1308420510 1181 dbSNP
rs1269341287 1182 dbSNP
rs374439334 1197 dbSNP
rs1286323067 1224 dbSNP
rs985829053 1239 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545215. RNA binding protein: AGO4. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gauucuGGUUCGG--AGGAAGgga 5'
                ||  |:|  ||||||   
Target 5' ------CCCCGUCUGUCCUUC--- 3'
 		1 - 15
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545215
Method / RBP PAR-CLIP / AGO4
Cell line / Condition HEK293 / Control
Location of target site ENST00000300797.6 | 3UTR | ccccgucuguccuuc
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
215 hsa-miR-4747-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061689 BTG2 BTG anti-proliferation factor 2 2 2
MIRT062834 BCL7A BCL tumor suppressor 7A 2 2
MIRT079371 CCDC137 coiled-coil domain containing 137 2 2
MIRT081190 MIDN midnolin 2 4
MIRT081724 ZNF507 zinc finger protein 507 2 2
MIRT110565 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT133724 SKI SKI proto-oncogene 2 4
MIRT146689 MINK1 misshapen like kinase 1 2 2
MIRT150676 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159196 NRBP1 nuclear receptor binding protein 1 2 2
MIRT180865 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT190659 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196111 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT232390 SP1 Sp1 transcription factor 2 2
MIRT331070 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT338632 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT407441 CTDSP1 CTD small phosphatase 1 2 2
MIRT444276 NKX6-1 NK6 homeobox 1 2 2
MIRT444834 PDE6D phosphodiesterase 6D 2 2
MIRT445452 EXT1 exostosin glycosyltransferase 1 2 2
MIRT445644 NPY4R neuropeptide Y receptor Y4 2 2
MIRT446157 RPL12 ribosomal protein L12 2 2
MIRT446608 HIP1 huntingtin interacting protein 1 2 2
MIRT447108 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT449314 MRO maestro 2 2
MIRT450305 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT451245 ZNF444 zinc finger protein 444 2 2
MIRT451714 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451908 ILK integrin linked kinase 2 2
MIRT452183 KIAA1456 KIAA1456 2 2
MIRT452610 REPIN1 replication initiator 1 2 2
MIRT453422 GLG1 golgi glycoprotein 1 2 2
MIRT454006 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT455072 ARHGAP39 Rho GTPase activating protein 39 2 2
MIRT455319 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT455357 KDM5C lysine demethylase 5C 2 2
MIRT455589 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT455711 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT455860 TMEM254 transmembrane protein 254 2 2
MIRT455919 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT455946 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT456935 LRP10 LDL receptor related protein 10 2 2
MIRT457223 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT457431 NOL10 nucleolar protein 10 2 2
MIRT457470 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457907 ZNF212 zinc finger protein 212 2 2
MIRT458046 TSEN54 tRNA splicing endonuclease subunit 54 2 2
MIRT458073 RNLS renalase, FAD dependent amine oxidase 2 2
MIRT458234 NXPH3 neurexophilin 3 2 2
MIRT458307 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458378 ITM2C integral membrane protein 2C 2 2
MIRT458967 ZNF436 zinc finger protein 436 2 2
MIRT459099 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT459446 TMEM37 transmembrane protein 37 2 2
MIRT459671 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT460727 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT460744 SRP14 signal recognition particle 14 2 2
MIRT461531 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461752 DDX11 DEAD/H-box helicase 11 2 2
MIRT461837 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT462019 RIF1 replication timing regulatory factor 1 2 2
MIRT462631 PHF5A PHD finger protein 5A 2 2
MIRT462772 ZNF8 zinc finger protein 8 2 2
MIRT463032 ZNF689 zinc finger protein 689 2 2
MIRT463886 WNT7B Wnt family member 7B 2 2
MIRT463995 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464371 URM1 ubiquitin related modifier 1 2 2
MIRT465342 TPM3 tropomyosin 3 2 4
MIRT465515 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465602 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT465697 TNPO2 transportin 2 2 10
MIRT466988 SSRP1 structure specific recognition protein 1 2 4
MIRT467630 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468132 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468322 SF3B3 splicing factor 3b subunit 3 2 2
MIRT468502 SESN2 sestrin 2 2 2
MIRT468881 RREB1 ras responsive element binding protein 1 2 2
MIRT469322 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469562 RARA retinoic acid receptor alpha 2 2
MIRT469898 PTRF caveolae associated protein 1 2 2
MIRT470045 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT470068 PTGES2 prostaglandin E synthase 2 2 2
MIRT470238 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470390 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT470500 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT470689 POLR2D RNA polymerase II subunit D 2 2
MIRT470704 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471083 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472482 NACC2 NACC family member 2 2 2
MIRT473583 MAT2A methionine adenosyltransferase 2A 2 2
MIRT474554 KLHDC3 kelch domain containing 3 2 2
MIRT474651 KLF13 Kruppel like factor 13 2 2
MIRT474843 KHSRP KH-type splicing regulatory protein 2 2
MIRT474934 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475573 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT476045 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476080 GRB2 growth factor receptor bound protein 2 2 2
MIRT476440 GBA2 glucosylceramidase beta 2 2 2
MIRT476764 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT478785 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479287 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT479505 CDH6 cadherin 6 2 2
MIRT479732 CCND1 cyclin D1 2 6
MIRT480352 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480407 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480859 BHLHB9 basic helix-loop-helix family member b9 2 2
MIRT481445 ARRB2 arrestin beta 2 2 2
MIRT481732 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT481824 AP2M1 adaptor related protein complex 2 mu 1 subunit 2 2
MIRT482566 ABHD2 abhydrolase domain containing 2 2 2
MIRT482607 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483144 SYCE1L synaptonemal complex central element protein 1 like 2 2
MIRT483214 APOA1 apolipoprotein A1 2 6
MIRT483878 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483917 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483939 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484420 SNX19 sorting nexin 19 2 2
MIRT484489 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484612 SIX3 SIX homeobox 3 2 6
MIRT484705 RNF11 ring finger protein 11 2 2
MIRT485107 SHISA6 shisa family member 6 2 2
MIRT485354 MYO1C myosin IC 2 4
MIRT485609 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT487311 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487417 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487695 CDK14 cyclin dependent kinase 14 2 2
MIRT487791 GPR20 G protein-coupled receptor 20 2 4
MIRT488042 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488058 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488237 DNLZ DNL-type zinc finger 2 4
MIRT488764 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489401 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489777 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490099 FN3K fructosamine 3 kinase 2 2
MIRT490290 ISL2 ISL LIM homeobox 2 2 2
MIRT490378 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491329 GFER growth factor, augmenter of liver regeneration 2 2
MIRT491435 MSX2 msh homeobox 2 2 2
MIRT491769 ZNF385A zinc finger protein 385A 2 2
MIRT491922 WNK2 WNK lysine deficient protein kinase 2 2 2
MIRT491983 UNK unkempt family zinc finger 2 2
MIRT492228 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492404 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT492767 PDGFB platelet derived growth factor subunit B 2 2
MIRT492966 NCS1 neuronal calcium sensor 1 2 2
MIRT493295 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT493650 HDLBP high density lipoprotein binding protein 2 2
MIRT493913 FAM127B retrotransposon Gag like 8A 2 4
MIRT495601 NKX2-5 NK2 homeobox 5 2 2
MIRT496875 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT498514 MYH14 myosin heavy chain 14 2 2
MIRT499178 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT502143 KIF5B kinesin family member 5B 2 8
MIRT502692 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT508460 HOXB6 homeobox B6 2 4
MIRT510430 ZNF207 zinc finger protein 207 2 6
MIRT511837 GPATCH8 G-patch domain containing 8 2 4
MIRT512368 CPM carboxypeptidase M 2 2
MIRT512506 BTBD19 BTB domain containing 19 2 2
MIRT513065 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513267 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 2 4
MIRT513575 EVX1 even-skipped homeobox 1 2 2
MIRT515051 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515790 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT521657 PRKD3 protein kinase D3 2 2
MIRT522679 LUZP1 leucine zipper protein 1 2 6
MIRT528845 RAB32 RAB32, member RAS oncogene family 2 2
MIRT533569 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT543738 DHCR7 7-dehydrocholesterol reductase 2 2
MIRT544295 TSPYL1 TSPY like 1 2 2
MIRT544857 MYH2 myosin heavy chain 2 2 4
MIRT557323 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT560522 TMEM98 transmembrane protein 98 2 2
MIRT561565 SLC6A9 solute carrier family 6 member 9 2 2
MIRT562374 ERI2 ERI1 exoribonuclease family member 2 2 2
MIRT565780 SEMA6D semaphorin 6D 2 2
MIRT569548 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT569944 PRRT2 proline rich transmembrane protein 2 2 2
MIRT570016 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572163 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT572322 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573495 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574139 MARVELD1 MARVEL domain containing 1 2 2
MIRT609449 CCDC149 coiled-coil domain containing 149 2 2
MIRT610619 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT623355 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT629854 ACOX1 acyl-CoA oxidase 1 2 2
MIRT630516 CDC73 cell division cycle 73 2 2
MIRT632535 PSMB2 proteasome subunit beta 2 2 2
MIRT633975 SLC35E2 solute carrier family 35 member E2 2 2
MIRT636408 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT641722 LTBR lymphotoxin beta receptor 2 2
MIRT642661 RGS6 regulator of G protein signaling 6 2 2
MIRT649649 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT650367 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT651355 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT664840 HUS1 HUS1 checkpoint clamp component 2 2
MIRT667322 MYH9 myosin heavy chain 9 2 2
MIRT670680 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT674922 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT675919 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT676493 GJD3 gap junction protein delta 3 2 2
MIRT680162 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT688008 GSN gelsolin 2 2
MIRT688997 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT700337 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT701344 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT703519 FKBP15 FK506 binding protein 15 2 2
MIRT703901 EPT1 selenoprotein I 2 2
MIRT705565 ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 2 2
MIRT709709 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT713108 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT718426 ZNF85 zinc finger protein 85 2 2
MIRT719236 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719326 STAC SH3 and cysteine rich domain 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4747 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4747-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4747-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4747-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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