miRTarBase - #MIRT570167


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pre-miRNA Information
pre-miRNA hsa-mir-2909   
Genomic Coordinates chr17: 37033745 - 37033813
Description Homo sapiens miR-2909 stem-loop
Comment This miRNA was referred to as hmiR-che-1 in .
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-2909
Sequence 4| GUUAGGGCCAACAUCUCUUGG |24
Evidence Experimental
Experiments QPCR
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs187707102 7 dbSNP
rs1375183104 8 dbSNP
rs1174848003 11 dbSNP
rs576577155 21 dbSNP
Putative Targets

Gene Information
Gene Symbol LIPG   
Synonyms EDL, EL, PRO719
Description lipase G, endothelial type
Transcript NM_006033   
Expression
Putative miRNA Targets on LIPG
3'UTR of LIPG
(miRNA target sites are highlighted)		 
>LIPG|NM_006033|3'UTR
   1 GGGTGCCCGGGCAAGTCTTGCCAGCAAGGCAGCAAGACTTCCTGCTATCCAAGCCCATGGAGGAAAGTTACTGCTGAGGA
  81 CCCACCCAATGGAAGGATTCTTCTCAGCCTTGACCCTGGAGCACTGGGAACAACTGGTCTCCTGTGATGGCTGGGACTCC
 161 TCGCGGGAGGGGACTGCGCTGCTATAGCTCTTGCTGCCTCTCTTGAATAGCTCTAACTCCAAACCTCTGTCCACACCTCC
 241 AGAGCACCAAGTCCAGATTTGTGTGTAAGCAGCTGGGTGCCTGGGGCCTCTCGTGCACACTGGATTGGTTTCTCAGTTGC
 321 TGGGCGAGCCTGTACTCTGCCTGACGAGGAACGCTGGCTCCGAAGAGGCCCTGTGTAGAAGGCTGTCAGCTGCTCAGCCT
 401 GCTTTGAGCCTCAGTGAGAAGTCCTTCCGACAGGAGCTGACTCATGTCAGGATGGCAGGCCTGGTATCTTGCTCGGGCCC
 481 TAGCTGTTGGGGTTCTCATGGGTTGCACTGACCATACTGCTTACGTCTTAGCCATTCCGTCCTGCTCCCCAGCTCACTCT
 561 CTGAAGCACACATCATTGGCTTTCCTATTTTTCTGTTCATTTTTTAATTGAGCAAATGTCTATTGAACACTTAAAATTAA
 641 TTAGAATGTGGTAATGGACATATTACTGAGCCTCTCCATTTGGAACCCAGTGGAGTTGGGATTTCTAGACCCTCTTTCTG
 721 TTTGGATGGTGTATGTGTATATGCATGGGGAAAGGCACCTGGGGCCTGGGGGAGGCTATAGGATATAAGCATTAGGGACC
 801 CTGAGGCTTTAAGTGGTTTCTATTTCTTCTTAGTTATTATGTGCCACCTTCTTAGTTATTATGTGCCACCTCCCCTATGA
 881 GTGACGTGTTTGATCACTAGCAGAATAGCAAGCAGAGTATCATTCATGCTGGGGCCAGAATGATGGCCGGTTGCCAGATA
 961 TAACTGCTTTGGAGCAAATCTCTTCTGTTTAGAGAGATAGAAGTTATGACATATGTAATACACATCTGTGTACACAGAAA
1041 CCGGCACCTGCCAGACAGAGCTGGTTCTAAGATTTAATACAGTGCTTTTTTTCCTCTTTGAAATATTTTACTTTAATACC
1121 AGTGCCTTTTCTTGTTGAACTTCTTGGAAAAGCCACCAATTCTAGATCTTGATTTGAATTAATACACACAATATCTGAGA
1201 CACTTACACTTTTCAAAAGATTTGTGTATGCATTGCCTAATTAGAGTAGGGGGAGAAGGGCAACTATTATTATCCCTATT
1281 TTACAAAACTGAGGCTTAGTGAGGTTCAGCCACATGCCTAGACTTATATACTAGTTAGTGGTGCAGCCAGGGAGAGGACT
1361 CAGATTTCCTGGAGGCAAAGTCTATCTCTGAAACTCCATGAAGACTTTTGCAGCCAGTTCCCACCAATATGCCCCAGACG
1441 TGAGACAAACAAGGACTTTTTTTTTTATATAGAGCCATCCATAAAATCCTAAGCCCTTTTATTAATGTATAACCAGGAGA
1521 ACATCTGTGCCAACGGTTGGACTTTTTATGGCTGAGATTCGGGAGGAAGTGTGACACCAAGCAGGAGAGGAAGAATGATT
1601 TTCTTTGTACTTAGGTTTTCTAAGGACATTGTTTTAATCTGTATCGTGCCAAAGTTGTATCACTGTTAAACTTCTGAAGA
1681 CATAACCAGTTGAGTCTTATTTCAAGATATGTTCTCAAGCCAATTGTGTGCTTCTCTTGTTTCTGTGATTGCTTTCTAGC
1761 CAAAGCGAAGCTTGTACAGGTTGAGTATCCCTTATCCAAAATGCTTGGAACCAGAAGTGTTTCAAATTTTAGATTATTTT
1841 CAGATTTTGGAATGTTTGCATATACATAATGAGATATTTTGGGAATAGGACCCGAGCCTAAACACAAAATTCATTGATGT
1921 GTCAGTTACACCTTATCCACATAGCCTGAGGGTAATTTTATACGATATTTTAAATAGTTGTGTACATGAAGCATGGTTTG
2001 TGGTAACTTATGTGAGGGGTTTTCCCATTTTTTGTCTTGTTGGTGCTCAAAAAGTTTTGGATTTTGGAGCATTTCGGATT
2081 TTGGATTTTTGGATTAGGGTTGCTCAACCCATATTATTGGCTGTACATCCTGGTCACTTCTGACTTCTGTTTTTACTAAT
2161 GGAAGCTTTGCAAATTGAATTCTCAGTGAGTTGTATATTTATACACCTGGCTTGAAGCCTTAATTGTATATAATGATGCT
2241 TTTTAAAAAATGCTATTTGGAAGACTATTTATTTCTCGTGTATATAATGTATATAAAAAAATATGGTTAGTGTTTACCTA
2321 AGGTTAACCAATTTCAAGATTAAAATTTTTAAATAGTAAAATAATAAAAAATTATAAAGTTCTTAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gguuCUCUACAA-----CCGGGAUUg 5'
              |: || ||     |||||||: 
Target 5' gcctGGTATCTTGCTCGGGCCCTAGc 3'
 459 - 484 133.00 -17.20
2 
miRNA  3' ggUUCUCUACAACCGGGAUUg 5'
            :| ||| | |||::|||| 
Target 5' caGACAGA-GCTGGTTCTAAg 3'
 1052 - 1071 130.00 -11.30
3 
miRNA  3' gguUCUCUAC--AAC--CGGGAUUg 5'
             | |  ||  |||  |||:||| 
Target 5' tatACACCTGGCTTGAAGCCTTAAt 3'
 2200 - 2224 130.00 -9.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN9336380 34 COSMIC
COSN31575288 36 COSMIC
COSN30506848 40 COSMIC
COSN30487507 61 COSMIC
COSN31544941 69 COSMIC
COSN30174456 179 COSMIC
COSN28765924 283 COSMIC
COSN32156915 413 COSMIC
COSN1745472 421 COSMIC
COSN26827425 949 COSMIC
COSN26239041 1022 COSMIC
COSN25580474 1036 COSMIC
COSN16484839 1189 COSMIC
COSN29171015 1303 COSMIC
COSN9336381 1538 COSMIC
COSN6125657 1582 COSMIC
COSN31961432 1866 COSMIC
COSN19005783 1931 COSMIC
COSN9839709 1964 COSMIC
COSN24977754 2042 COSMIC
COSN1745473 2355 COSMIC
COSN26897646 2491 COSMIC
COSN9336382 3143 COSMIC
COSN29157941 3360 COSMIC
COSN27035630 3572 COSMIC
COSN21099862 3649 COSMIC
COSN8251921 3896 COSMIC
COSN9336383 4215 COSMIC
COSN23337059 4634 COSMIC
COSN5428036 4949 COSMIC
COSN22028321 5029 COSMIC
COSN8251922 5075 COSMIC
COSN25924048 5110 COSMIC
COSN17119965 5385 COSMIC
COSN21636462 5531 COSMIC
COSN20618784 5633 COSMIC
COSN8251923 5879 COSMIC
COSN14941576 5906 COSMIC
COSN24977755 6000 COSMIC
COSN27809867 6770 COSMIC
COSN1745474 6868 COSMIC
COSN28990526 7054 COSMIC
COSN22789387 7060 COSMIC
COSN6125659 7201 COSMIC
COSN9336384 7262 COSMIC
COSN1745475 7367 COSMIC
COSN9839711 7511 COSMIC
COSN28470545 7674 COSMIC
COSN24593371 7848 COSMIC
COSN6125660 7948 COSMIC
COSN9336385 8288 COSMIC
COSN29277608 8463 COSMIC
COSN17961636 8481 COSMIC
rs9958734 1507 GWAS
rs3786247 2032 GWAS
rs11082764 2688 GWAS
rs17798991 4425 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs775524172 2 dbSNP
rs748290292 6 dbSNP
rs772247956 9 dbSNP
rs773636934 10 dbSNP
rs760967588 11 dbSNP
rs1252924369 13 dbSNP
rs1166765078 15 dbSNP
rs766567286 15 dbSNP
rs933450814 16 dbSNP
rs1187260979 19 dbSNP
rs776888911 21 dbSNP
rs1278959257 23 dbSNP
rs1419263219 25 dbSNP
rs1476492317 26 dbSNP
rs1169098253 30 dbSNP
rs1422304302 42 dbSNP
rs1351023919 44 dbSNP
rs1193878250 48 dbSNP
rs199640102 51 dbSNP
rs1255053223 71 dbSNP
rs928823584 80 dbSNP
rs1177429755 83 dbSNP
rs1350261725 88 dbSNP
rs908115132 90 dbSNP
rs940974832 91 dbSNP
rs1214030547 92 dbSNP
rs1337589057 96 dbSNP
rs1055575218 110 dbSNP
rs1037972232 124 dbSNP
rs549851979 126 dbSNP
rs1311383685 127 dbSNP
rs761895435 129 dbSNP
rs894208857 141 dbSNP
rs1375642011 142 dbSNP
rs1327822795 148 dbSNP
rs570066367 151 dbSNP
rs185084282 163 dbSNP
rs1427311569 164 dbSNP
rs551677971 165 dbSNP
rs540552068 166 dbSNP
rs1333368264 167 dbSNP
rs897461396 170 dbSNP
rs1204163658 171 dbSNP
rs1436152417 172 dbSNP
rs61756092 177 dbSNP
rs533987003 178 dbSNP
rs1292019312 179 dbSNP
rs1003118880 182 dbSNP
rs1035553833 194 dbSNP
rs890330512 199 dbSNP
rs773351327 201 dbSNP
rs1375666676 209 dbSNP
rs149266608 213 dbSNP
rs144502842 225 dbSNP
rs1018395045 226 dbSNP
rs1021513519 227 dbSNP
rs968649141 238 dbSNP
rs1475405472 241 dbSNP
rs78005569 243 dbSNP
rs1218133249 249 dbSNP
rs1468748210 261 dbSNP
rs1234838554 265 dbSNP
rs1199310512 271 dbSNP
rs1468127721 274 dbSNP
rs990207327 276 dbSNP
rs1029025428 280 dbSNP
rs954855636 282 dbSNP
rs3744843 283 dbSNP
rs908063035 286 dbSNP
rs940875332 293 dbSNP
rs1222445446 294 dbSNP
rs1375013536 305 dbSNP
rs1309586418 308 dbSNP
rs973612861 309 dbSNP
rs977743107 315 dbSNP
rs35968328 316 dbSNP
rs951002308 326 dbSNP
rs1199793689 327 dbSNP
rs1344553106 330 dbSNP
rs1156611025 334 dbSNP
rs1044126312 337 dbSNP
rs905592785 345 dbSNP
rs1179556315 346 dbSNP
rs41495445 347 dbSNP
rs1251143031 353 dbSNP
rs1195591687 354 dbSNP
rs1489065060 357 dbSNP
rs1260683506 358 dbSNP
rs3744842 362 dbSNP
rs572601953 363 dbSNP
rs764590627 372 dbSNP
rs897534432 381 dbSNP
rs1304922769 391 dbSNP
rs1399227561 393 dbSNP
rs183420721 396 dbSNP
rs1325037208 399 dbSNP
rs1021461119 402 dbSNP
rs1278574587 409 dbSNP
rs773720256 413 dbSNP
rs928956644 417 dbSNP
rs1329061431 420 dbSNP
rs561186423 424 dbSNP
rs186755159 429 dbSNP
rs116186267 430 dbSNP
rs1261612635 435 dbSNP
rs41418147 449 dbSNP
rs1487051497 453 dbSNP
rs954943583 461 dbSNP
rs893612168 465 dbSNP
rs1008961574 467 dbSNP
rs1011672806 469 dbSNP
rs1015427050 473 dbSNP
rs552248785 475 dbSNP
rs1292287842 476 dbSNP
rs1306469958 477 dbSNP
rs1293343256 478 dbSNP
rs973602770 479 dbSNP
rs61756095 480 dbSNP
rs3744841 483 dbSNP
rs3744840 485 dbSNP
rs1478863374 487 dbSNP
rs1373832587 492 dbSNP
rs926952234 494 dbSNP
rs1191341402 499 dbSNP
rs938363559 503 dbSNP
rs1458213789 507 dbSNP
rs1035669573 509 dbSNP
rs960580155 514 dbSNP
rs1280983137 525 dbSNP
rs547687709 526 dbSNP
rs1056841885 534 dbSNP
rs536432768 539 dbSNP
rs912979534 540 dbSNP
rs1361839745 549 dbSNP
rs1480108001 552 dbSNP
rs35424068 557 dbSNP
rs780571315 562 dbSNP
rs540062223 564 dbSNP
rs1292637662 570 dbSNP
rs1245968676 571 dbSNP
rs1357196092 580 dbSNP
rs781093568 583 dbSNP
rs1286379371 600 dbSNP
rs904430045 600 dbSNP
rs576011671 621 dbSNP
rs538629035 623 dbSNP
rs1401626490 624 dbSNP
rs1287040949 630 dbSNP
rs1164896804 633 dbSNP
rs911533685 651 dbSNP
rs1050783703 655 dbSNP
rs1262366745 667 dbSNP
rs890423447 669 dbSNP
rs1009322371 672 dbSNP
rs1015002876 676 dbSNP
rs1199946637 678 dbSNP
rs1189321685 686 dbSNP
rs1457862411 690 dbSNP
rs1272457481 697 dbSNP
rs1211815058 698 dbSNP
rs1010739078 706 dbSNP
rs1265753490 710 dbSNP
rs1238091483 711 dbSNP
rs1335359380 717 dbSNP
rs140610924 720 dbSNP
rs117316234 725 dbSNP
rs541359475 726 dbSNP
rs1381786043 730 dbSNP
rs1393540295 740 dbSNP
rs1036106196 741 dbSNP
rs144548133 746 dbSNP
rs1417315445 756 dbSNP
rs969559865 761 dbSNP
rs117827128 764 dbSNP
rs1361682317 776 dbSNP
rs928207833 777 dbSNP
rs1180186566 779 dbSNP
rs1439767616 784 dbSNP
rs959697979 812 dbSNP
rs1397168080 826 dbSNP
rs1453207879 830 dbSNP
rs1268012082 832 dbSNP
rs539204249 847 dbSNP
rs1336758761 867 dbSNP
rs992935793 870 dbSNP
rs1204299669 875 dbSNP
rs912975894 878 dbSNP
rs12456413 879 dbSNP
rs41404447 886 dbSNP
rs772097375 887 dbSNP
rs1245703599 889 dbSNP
rs1438838741 894 dbSNP
rs41529848 909 dbSNP
rs747294966 916 dbSNP
rs1324834923 918 dbSNP
rs1050328821 920 dbSNP
rs1356187863 927 dbSNP
rs1381995434 928 dbSNP
rs890403133 931 dbSNP
rs1160828691 933 dbSNP
rs1419867658 935 dbSNP
rs377272360 941 dbSNP
rs1171157734 949 dbSNP
rs770641712 950 dbSNP
rs1036797156 954 dbSNP
rs1192459735 959 dbSNP
rs1202059553 960 dbSNP
rs987206257 962 dbSNP
rs1488715597 967 dbSNP
rs35230281 983 dbSNP
rs78113949 983 dbSNP
rs1279928149 987 dbSNP
rs1217524973 991 dbSNP
rs1347287472 1001 dbSNP
rs897901075 1004 dbSNP
rs1275957422 1007 dbSNP
rs1227253493 1011 dbSNP
rs532454744 1014 dbSNP
rs994895577 1015 dbSNP
rs1179096481 1016 dbSNP
rs3826578 1018 dbSNP
rs557693225 1022 dbSNP
rs1374447124 1023 dbSNP
rs867417333 1026 dbSNP
rs1415674325 1030 dbSNP
rs776421985 1036 dbSNP
rs41486750 1043 dbSNP
rs528481164 1044 dbSNP
rs1377662768 1057 dbSNP
rs961285849 1057 dbSNP
rs114058301 1061 dbSNP
rs567531265 1064 dbSNP
rs1474785417 1073 dbSNP
rs1257056836 1076 dbSNP
rs1208365413 1080 dbSNP
rs775327607 1081 dbSNP
rs548132483 1082 dbSNP
rs1332518526 1085 dbSNP
rs1316553512 1086 dbSNP
rs3826577 1088 dbSNP
rs1444784751 1107 dbSNP
rs925714552 1108 dbSNP
rs1042256224 1111 dbSNP
rs1355290643 1115 dbSNP
rs931827498 1126 dbSNP
rs902307331 1137 dbSNP
rs999347123 1141 dbSNP
rs774967828 1149 dbSNP
rs1359400169 1157 dbSNP
rs1327551330 1160 dbSNP
rs986408385 1164 dbSNP
rs911795467 1170 dbSNP
rs1235521018 1174 dbSNP
rs751191062 1192 dbSNP
rs1171366329 1193 dbSNP
rs1254172748 1195 dbSNP
rs1322809107 1196 dbSNP
rs767048839 1202 dbSNP
rs1238301213 1203 dbSNP
rs41423445 1208 dbSNP
rs538394694 1226 dbSNP
rs1239824520 1229 dbSNP
rs1456302491 1239 dbSNP
rs1176221800 1242 dbSNP
rs1260541097 1246 dbSNP
rs558604667 1251 dbSNP
rs1288104070 1257 dbSNP
rs1230414789 1265 dbSNP
rs1379400683 1275 dbSNP
rs59866846 1279 dbSNP
rs114581962 1285 dbSNP
rs905310227 1291 dbSNP
rs1002371859 1295 dbSNP
rs754287603 1297 dbSNP
rs995021441 1300 dbSNP
rs1035619047 1301 dbSNP
rs1376403312 1302 dbSNP
rs1469772151 1304 dbSNP
rs192005561 1308 dbSNP
rs1414775314 1310 dbSNP
rs1158273823 1318 dbSNP
rs974865147 1327 dbSNP
rs3786248 1328 dbSNP
rs987668705 1339 dbSNP
rs41371047 1342 dbSNP
rs978433171 1352 dbSNP
rs964405174 1360 dbSNP
rs974422743 1373 dbSNP
rs1032721253 1381 dbSNP
rs375285765 1382 dbSNP
rs946621587 1385 dbSNP
rs977993228 1399 dbSNP
rs985970741 1400 dbSNP
rs923809249 1401 dbSNP
rs547902941 1405 dbSNP
rs577362361 1410 dbSNP
rs1295273675 1415 dbSNP
rs376403135 1417 dbSNP
rs971937783 1418 dbSNP
rs1436917985 1423 dbSNP
rs552750566 1424 dbSNP
rs895886147 1425 dbSNP
rs566527672 1427 dbSNP
rs1044390359 1428 dbSNP
rs1418038207 1430 dbSNP
rs1382428255 1437 dbSNP
rs748665466 1438 dbSNP
rs775989075 1440 dbSNP
rs899137937 1441 dbSNP
rs995055613 1446 dbSNP
rs1026567780 1457 dbSNP
rs140562476 1457 dbSNP
rs1049128652 1459 dbSNP
rs1214936174 1462 dbSNP
rs146861047 1467 dbSNP
rs938122865 1470 dbSNP
rs760739860 1473 dbSNP
rs1303315674 1475 dbSNP
rs528519252 1481 dbSNP
rs1056565013 1487 dbSNP
rs1296068626 1497 dbSNP
rs1401654825 1506 dbSNP
rs9958734 1507 dbSNP
rs1009739978 1508 dbSNP
rs183322828 1511 dbSNP
rs967702714 1515 dbSNP
rs978448522 1516 dbSNP
rs777830129 1519 dbSNP
rs1357431651 1520 dbSNP
rs1178339654 1523 dbSNP
rs530060296 1526 dbSNP
rs747174388 1528 dbSNP
rs550037767 1535 dbSNP
rs878965875 1536 dbSNP
rs1479035886 1538 dbSNP
rs1263440068 1541 dbSNP
rs569784755 1543 dbSNP
rs776368627 1561 dbSNP
rs1007701044 1562 dbSNP
rs1210238825 1583 dbSNP
rs1306813007 1597 dbSNP
rs1276278992 1598 dbSNP
rs1220220341 1610 dbSNP
rs369074679 1613 dbSNP
rs868150709 1622 dbSNP
rs1292451874 1637 dbSNP
rs1018700794 1646 dbSNP
rs532312340 1647 dbSNP
rs1377273474 1673 dbSNP
rs1194957444 1675 dbSNP
rs1466652391 1677 dbSNP
rs948814818 1684 dbSNP
rs966238602 1704 dbSNP
rs140704597 1705 dbSNP
rs919172208 1706 dbSNP
rs73959571 1708 dbSNP
rs1048479494 1711 dbSNP
rs886677914 1724 dbSNP
rs534327327 1727 dbSNP
rs112998120 1729 dbSNP
rs552175518 1731 dbSNP
rs926587915 1733 dbSNP
rs1256086865 1736 dbSNP
rs1200526933 1738 dbSNP
rs1318500557 1740 dbSNP
rs1272373412 1752 dbSNP
rs567715925 1761 dbSNP
rs537386573 1767 dbSNP
rs900630387 1768 dbSNP
rs1364989555 1772 dbSNP
rs1376164702 1775 dbSNP
rs1400707639 1778 dbSNP
rs995964047 1783 dbSNP
rs1056911907 1786 dbSNP
rs918015331 1790 dbSNP
rs977766087 1791 dbSNP
rs1031060446 1795 dbSNP
rs960671089 1802 dbSNP
rs992453155 1804 dbSNP
rs1313205180 1815 dbSNP
rs61762478 1815 dbSNP
rs1458190802 1817 dbSNP
rs1266539167 1818 dbSNP
rs1207865112 1841 dbSNP
rs1358130332 1844 dbSNP
rs1323313867 1854 dbSNP
rs1245885201 1860 dbSNP
rs1218862102 1865 dbSNP
rs41373845 1867 dbSNP
rs1042558857 1870 dbSNP
rs969193692 1876 dbSNP
rs980192945 1889 dbSNP
rs904100741 1893 dbSNP
rs1218245933 1894 dbSNP
rs1001045976 1895 dbSNP
rs1393421727 1898 dbSNP
rs1294477656 1903 dbSNP
rs1049987954 1908 dbSNP
rs1265959620 1910 dbSNP
rs1378064643 1914 dbSNP
rs888741270 1915 dbSNP
rs1007236604 1918 dbSNP
rs577395778 1925 dbSNP
rs1019101471 1930 dbSNP
rs1047734477 1932 dbSNP
rs965859663 1936 dbSNP
rs546352808 1937 dbSNP
rs1414926911 1951 dbSNP
rs187765727 1964 dbSNP
rs1026179043 1965 dbSNP
rs1425952097 1975 dbSNP
rs951872001 1977 dbSNP
rs1242429247 1981 dbSNP
rs984683044 1983 dbSNP
rs926562438 1984 dbSNP
rs1384854127 1989 dbSNP
rs1040644718 1994 dbSNP
rs138509756 2000 dbSNP
rs79516737 2004 dbSNP
rs1358510370 2013 dbSNP
rs562103340 2019 dbSNP
rs1419780989 2020 dbSNP
rs917977861 2026 dbSNP
rs945492417 2027 dbSNP
rs3786247 2032 dbSNP
rs1378099363 2035 dbSNP
rs1476687645 2037 dbSNP
rs925434059 2037 dbSNP
rs1261314755 2038 dbSNP
rs543380384 2040 dbSNP
rs1380996542 2043 dbSNP
rs532879552 2054 dbSNP
rs1313916629 2055 dbSNP
rs1354041940 2061 dbSNP
rs563569529 2063 dbSNP
rs532222197 2072 dbSNP
rs1030675519 2079 dbSNP
rs1264247817 2090 dbSNP
rs960612330 2099 dbSNP
rs1338814086 2104 dbSNP
rs1315846760 2111 dbSNP
rs1013543122 2128 dbSNP
rs552309633 2132 dbSNP
rs1339485820 2133 dbSNP
rs1331673168 2146 dbSNP
rs969224620 2155 dbSNP
rs973860279 2158 dbSNP
rs919739508 2165 dbSNP
rs1238574324 2172 dbSNP
rs1484405287 2174 dbSNP
rs559028196 2176 dbSNP
rs1194091960 2187 dbSNP
rs1475888731 2198 dbSNP
rs1237080877 2200 dbSNP
rs1050399259 2201 dbSNP
rs952169496 2205 dbSNP
rs890080479 2207 dbSNP
rs1264308951 2218 dbSNP
rs983899600 2236 dbSNP
rs1316579767 2245 dbSNP
rs1260446570 2251 dbSNP
rs1160709944 2266 dbSNP
rs943024902 2271 dbSNP
rs1405817078 2277 dbSNP
rs907907265 2278 dbSNP
rs762804081 2279 dbSNP
rs944694765 2282 dbSNP
rs1171007895 2283 dbSNP
rs199879783 2295 dbSNP
rs192589839 2305 dbSNP
rs932198401 2314 dbSNP
rs1450165889 2319 dbSNP
rs1335898111 2322 dbSNP
rs1043930382 2327 dbSNP
rs1413363728 2355 dbSNP
rs1161613352 2358 dbSNP
rs1473895017 2365 dbSNP
rs1243886957 2366 dbSNP
rs1456854515 2366 dbSNP
rs903986543 2366 dbSNP
rs1240525051 2371 dbSNP
rs901577317 2377 dbSNP
rs1451332090 2383 dbSNP
rs538139160 2387 dbSNP
rs993216289 2388 dbSNP
rs1359686664 2389 dbSNP
rs1307953564 2392 dbSNP
rs1026087713 2394 dbSNP
rs887571213 2397 dbSNP
rs116819921 2398 dbSNP
rs1435505571 2402 dbSNP
rs1023534320 2403 dbSNP
rs1158152768 2403 dbSNP
rs1178211591 2403 dbSNP
rs1224201804 2403 dbSNP
rs1245398643 2403 dbSNP
rs1347971306 2403 dbSNP
rs1386058669 2403 dbSNP
rs1397729786 2403 dbSNP
rs1437850993 2403 dbSNP
rs1034005957 2405 dbSNP
rs1490421339 2410 dbSNP
rs1314528054 2421 dbSNP
rs959343079 2426 dbSNP
rs1284807524 2429 dbSNP
rs1440152144 2430 dbSNP
rs1160218133 2431 dbSNP
rs1358242082 2432 dbSNP
rs1307080174 2434 dbSNP
rs1355143058 2434 dbSNP
rs969297939 2435 dbSNP
rs1365379578 2439 dbSNP
rs1180676911 2451 dbSNP
rs1231399697 2452 dbSNP
rs34524107 2453 dbSNP
rs1191901850 2460 dbSNP
rs1405285218 2468 dbSNP
rs1366449871 2471 dbSNP
rs1024947116 2474 dbSNP
rs1297755894 2476 dbSNP
rs966702877 2479 dbSNP
rs796895474 2483 dbSNP
rs1159904081 2485 dbSNP
rs1400697710 2492 dbSNP
rs1423638182 2501 dbSNP
rs537031413 2506 dbSNP
rs1467007346 2510 dbSNP
rs1326374850 2511 dbSNP
rs1262025081 2513 dbSNP
rs925379507 2514 dbSNP
rs1334875470 2516 dbSNP
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rs62101702 6052 dbSNP
rs1483683477 6054 dbSNP
rs972833203 6056 dbSNP
rs919672520 6058 dbSNP
rs1435570860 6063 dbSNP
rs931027117 6070 dbSNP
rs754819082 6071 dbSNP
rs753526807 6072 dbSNP
rs1179077867 6074 dbSNP
rs1427670924 6077 dbSNP
rs1465699223 6085 dbSNP
rs938524532 6086 dbSNP
rs1370634766 6100 dbSNP
rs1292930197 6101 dbSNP
rs1456310608 6105 dbSNP
rs1351445626 6109 dbSNP
rs1165168717 6111 dbSNP
rs1163529958 6114 dbSNP
rs1209808283 6114 dbSNP
rs1222703321 6114 dbSNP
rs1229840907 6114 dbSNP
rs1251306710 6114 dbSNP
rs1267635092 6114 dbSNP
rs1286145975 6114 dbSNP
rs1299953999 6114 dbSNP
rs1328057524 6114 dbSNP
rs1332905213 6114 dbSNP
rs1487766489 6114 dbSNP
rs35773018 6114 dbSNP
rs1298968765 6116 dbSNP
rs1398659596 6117 dbSNP
rs1389809564 6120 dbSNP
rs994293751 6123 dbSNP
rs541185713 6132 dbSNP
rs1293900385 6134 dbSNP
rs1157275392 6137 dbSNP
rs891756167 6137 dbSNP
rs1307337285 6138 dbSNP
rs1346115812 6139 dbSNP
rs1225095429 6145 dbSNP
rs1364487529 6148 dbSNP
rs1198185289 6152 dbSNP
rs1281086498 6154 dbSNP
rs1270015842 6155 dbSNP
rs946052347 6159 dbSNP
rs1311422269 6161 dbSNP
rs1043481504 6163 dbSNP
rs1227614536 6168 dbSNP
rs1464776267 6170 dbSNP
rs187527730 6170 dbSNP
rs996642511 6180 dbSNP
rs1329374505 6184 dbSNP
rs1029085491 6186 dbSNP
rs890595381 6187 dbSNP
rs964648024 6188 dbSNP
rs543566025 6191 dbSNP
rs1301964720 6196 dbSNP
rs748036655 6197 dbSNP
rs1009104110 6200 dbSNP
rs758429258 6206 dbSNP
rs962636413 6225 dbSNP
rs1202270862 6228 dbSNP
rs12604221 6231 dbSNP
rs1385875590 6232 dbSNP
rs11659356 6233 dbSNP
rs192781552 6234 dbSNP
rs755003792 6238 dbSNP
rs979785904 6240 dbSNP
rs927078104 6244 dbSNP
rs1168094544 6249 dbSNP
rs561926625 6263 dbSNP
rs1055392693 6269 dbSNP
rs1447221903 6275 dbSNP
rs915546709 6293 dbSNP
rs1280375749 6297 dbSNP
rs1346566134 6297 dbSNP
rs992646600 6297 dbSNP
rs913140302 6298 dbSNP
rs1227610057 6300 dbSNP
rs945927126 6302 dbSNP
rs532517016 6303 dbSNP
rs1037622758 6304 dbSNP
rs1333829529 6306 dbSNP
rs1382626762 6307 dbSNP
rs1394490929 6316 dbSNP
rs897678001 6335 dbSNP
rs1313517587 6337 dbSNP
rs12606544 6346 dbSNP
rs1324359379 6350 dbSNP
rs1051568025 6357 dbSNP
rs891233702 6368 dbSNP
rs370519123 6378 dbSNP
rs932009336 6380 dbSNP
rs1185011794 6396 dbSNP
rs1050492500 6399 dbSNP
rs1008275943 6406 dbSNP
rs115898387 6407 dbSNP
rs374968243 6440 dbSNP
rs1009056089 6448 dbSNP
rs1225297254 6459 dbSNP
rs1036502535 6468 dbSNP
rs1355443839 6474 dbSNP
rs964069088 6485 dbSNP
rs1488357390 6488 dbSNP
rs1242923607 6498 dbSNP
rs182632989 6499 dbSNP
rs1293997766 6500 dbSNP
rs138799470 6501 dbSNP
rs142806888 6505 dbSNP
rs1410986221 6520 dbSNP
rs1390501992 6521 dbSNP
rs762268982 6544 dbSNP
rs1188198533 6547 dbSNP
rs1418037774 6550 dbSNP
rs1181007863 6552 dbSNP
rs977570078 6559 dbSNP
rs1471359362 6563 dbSNP
rs1001193138 6571 dbSNP
rs767880989 6572 dbSNP
rs1385869195 6577 dbSNP
rs1426637366 6580 dbSNP
rs1161580039 6582 dbSNP
rs959792483 6589 dbSNP
rs1337232432 6593 dbSNP
rs1274104270 6594 dbSNP
rs1227993094 6603 dbSNP
rs547341438 6605 dbSNP
rs188148492 6606 dbSNP
rs1330969649 6607 dbSNP
rs913035127 6624 dbSNP
rs866813038 6630 dbSNP
rs1290460579 6633 dbSNP
rs1407498703 6635 dbSNP
rs967241612 6637 dbSNP
rs1433818238 6641 dbSNP
rs973758225 6643 dbSNP
rs1384350118 6644 dbSNP
rs979053569 6648 dbSNP
rs1243229524 6652 dbSNP
rs1177229653 6657 dbSNP
rs1477664907 6658 dbSNP
rs1244842482 6661 dbSNP
rs1468787770 6676 dbSNP
rs1267223639 6677 dbSNP
rs1311172410 6679 dbSNP
rs569568947 6680 dbSNP
rs868812971 6682 dbSNP
rs1327275640 6685 dbSNP
rs191682403 6692 dbSNP
rs929184636 6696 dbSNP
rs1344388766 6697 dbSNP
rs1051600304 6704 dbSNP
rs1443730460 6704 dbSNP
rs931973598 6713 dbSNP
rs1320264369 6714 dbSNP
rs1432478580 6717 dbSNP
rs1346542896 6720 dbSNP
rs1159203117 6725 dbSNP
rs944137595 6731 dbSNP
rs1422418252 6732 dbSNP
rs1174288207 6733 dbSNP
rs1454629128 6735 dbSNP
rs1039787188 6744 dbSNP
rs147420611 6765 dbSNP
rs1463715089 6774 dbSNP
rs1463826758 6779 dbSNP
rs1244118018 6782 dbSNP
rs572355327 6784 dbSNP
rs899853924 6785 dbSNP
rs1441969735 6786 dbSNP
rs541321296 6787 dbSNP
rs911909178 6793 dbSNP
rs138082123 6794 dbSNP
rs1349169566 6798 dbSNP
rs1297342211 6800 dbSNP
rs1226562539 6809 dbSNP
rs574960415 6811 dbSNP
rs897953664 6812 dbSNP
rs995048688 6827 dbSNP
rs1049772704 6842 dbSNP
rs1256401266 6843 dbSNP
rs543580490 6844 dbSNP
rs755267951 6850 dbSNP
rs1033949663 6854 dbSNP
rs1166631274 6855 dbSNP
rs1419547458 6856 dbSNP
rs563775498 6862 dbSNP
rs1430141331 6868 dbSNP
rs1419941862 6870 dbSNP
rs4939585 6872 dbSNP
rs960197689 6873 dbSNP
rs546180289 6877 dbSNP
rs72642488 6890 dbSNP
rs1022700829 6903 dbSNP
rs1486288668 6913 dbSNP
rs963430842 6919 dbSNP
rs1309674277 6933 dbSNP
rs1020040820 6941 dbSNP
rs973110907 6943 dbSNP
rs918886485 6946 dbSNP
rs1449808712 6947 dbSNP
rs1301700733 6969 dbSNP
rs929215654 6972 dbSNP
rs527634173 6980 dbSNP
rs78810361 6981 dbSNP
rs967608967 6982 dbSNP
rs777041602 6983 dbSNP
rs1294598286 6985 dbSNP
rs1414934725 6989 dbSNP
rs1369383786 6999 dbSNP
rs1306156444 7001 dbSNP
rs1463436970 7002 dbSNP
rs1224760331 7004 dbSNP
rs1163752473 7006 dbSNP
rs752566804 7008 dbSNP
rs1190325864 7018 dbSNP
rs1309803399 7020 dbSNP
rs911766922 7023 dbSNP
rs1180684832 7031 dbSNP
rs1481878333 7035 dbSNP
rs1375213143 7045 dbSNP
rs777546469 7051 dbSNP
rs1040220734 7053 dbSNP
rs547707254 7054 dbSNP
rs184189651 7055 dbSNP
rs986063185 7058 dbSNP
rs146504028 7059 dbSNP
rs762529719 7059 dbSNP
rs911855394 7059 dbSNP
rs747023681 7060 dbSNP
rs1393095287 7062 dbSNP
rs1373900164 7063 dbSNP
rs1292736734 7064 dbSNP
rs999103743 7073 dbSNP
rs1396393812 7077 dbSNP
rs1035887364 7087 dbSNP
rs116980487 7113 dbSNP
rs1411354005 7114 dbSNP
rs919386959 7128 dbSNP
rs149548726 7135 dbSNP
rs58456601 7147 dbSNP
rs1023531486 7154 dbSNP
rs1251948889 7184 dbSNP
rs1191105297 7189 dbSNP
rs773109970 7192 dbSNP
rs72913967 7200 dbSNP
rs763116943 7204 dbSNP
rs1056647350 7205 dbSNP
rs1176954984 7214 dbSNP
rs769467930 7215 dbSNP
rs1372949685 7218 dbSNP
rs1326276490 7220 dbSNP
rs1431190027 7237 dbSNP
rs911797871 7238 dbSNP
rs551800931 7242 dbSNP
rs1455461104 7248 dbSNP
rs1174919709 7250 dbSNP
rs1013911263 7254 dbSNP
rs565327256 7262 dbSNP
rs1397298686 7269 dbSNP
rs1194598161 7272 dbSNP
rs947530137 7281 dbSNP
rs1206513170 7291 dbSNP
rs1485938013 7297 dbSNP
rs1443813426 7301 dbSNP
rs1020451002 7304 dbSNP
rs535019785 7306 dbSNP
rs1254874581 7310 dbSNP
rs902957395 7311 dbSNP
rs1303883025 7313 dbSNP
rs1227478277 7317 dbSNP
rs1310382375 7335 dbSNP
rs1362747094 7341 dbSNP
rs779722290 7345 dbSNP
rs1316557305 7350 dbSNP
rs1384103305 7352 dbSNP
rs1385800090 7353 dbSNP
rs1433419369 7366 dbSNP
rs1000366022 7368 dbSNP
rs924640236 7372 dbSNP
rs1032821963 7375 dbSNP
rs934650936 7379 dbSNP
rs1449305099 7383 dbSNP
rs144221267 7393 dbSNP
rs1194931106 7395 dbSNP
rs1428691946 7402 dbSNP
rs1326136565 7406 dbSNP
rs953192645 7409 dbSNP
rs574955819 7414 dbSNP
rs1278262633 7415 dbSNP
rs1308149700 7419 dbSNP
rs896090758 7435 dbSNP
rs1271671839 7441 dbSNP
rs1229920075 7451 dbSNP
rs1206768035 7453 dbSNP
rs748491435 7461 dbSNP
rs368914714 7462 dbSNP
rs772547293 7482 dbSNP
rs1314076621 7484 dbSNP
rs1429642214 7491 dbSNP
rs1200100787 7499 dbSNP
rs1169949082 7503 dbSNP
rs773590630 7511 dbSNP
rs1462181545 7513 dbSNP
rs1367598964 7515 dbSNP
rs1270694578 7521 dbSNP
rs1185329148 7535 dbSNP
rs1475928572 7536 dbSNP
rs1257563050 7539 dbSNP
rs899320835 7540 dbSNP
rs1435954713 7542 dbSNP
rs537618458 7546 dbSNP
rs1476926036 7555 dbSNP
rs994634724 7555 dbSNP
rs1171626326 7557 dbSNP
rs1355376398 7560 dbSNP
rs1272854412 7570 dbSNP
rs1419869689 7593 dbSNP
rs1411121374 7596 dbSNP
rs1026050153 7599 dbSNP
rs1166224922 7600 dbSNP
rs189089682 7607 dbSNP
rs1334434900 7620 dbSNP
rs950390180 7636 dbSNP
rs1008580068 7660 dbSNP
rs1392394150 7660 dbSNP
rs773528401 7660 dbSNP
rs774110817 7660 dbSNP
rs34510767 7661 dbSNP
rs1156749063 7666 dbSNP
rs972111980 7676 dbSNP
rs761252891 7679 dbSNP
rs919320196 7680 dbSNP
rs1304282405 7682 dbSNP
rs1333181278 7683 dbSNP
rs975060176 7685 dbSNP
rs114814405 7690 dbSNP
rs985301237 7692 dbSNP
rs148726080 7697 dbSNP
rs192473048 7698 dbSNP
rs924712706 7699 dbSNP
rs559829411 7701 dbSNP
rs1223354939 7702 dbSNP
rs1348612662 7706 dbSNP
rs938190957 7712 dbSNP
rs1272525256 7715 dbSNP
rs1341551991 7728 dbSNP
rs934724013 7730 dbSNP
rs1057062740 7731 dbSNP
rs1442664413 7733 dbSNP
rs569911874 7734 dbSNP
rs573261412 7735 dbSNP
rs1409508472 7737 dbSNP
rs1159116751 7745 dbSNP
rs541356761 7747 dbSNP
rs118119731 7750 dbSNP
rs1041353852 7752 dbSNP
rs1393062628 7758 dbSNP
rs529856334 7759 dbSNP
rs1253930384 7762 dbSNP
rs1476160463 7766 dbSNP
rs1445387789 7768 dbSNP
rs999907827 7773 dbSNP
rs555547562 7784 dbSNP
rs549899778 7787 dbSNP
rs1224844977 7798 dbSNP
rs1347718504 7799 dbSNP
rs1033182763 7807 dbSNP
rs1388938054 7808 dbSNP
rs1444781006 7815 dbSNP
rs1047895058 7824 dbSNP
rs1372170561 7829 dbSNP
rs1269285554 7836 dbSNP
rs752649469 7841 dbSNP
rs563334446 7845 dbSNP
rs185807497 7847 dbSNP
rs1323250731 7863 dbSNP
rs1018628002 7871 dbSNP
rs1018853657 7875 dbSNP
rs900166507 7880 dbSNP
rs965978908 7884 dbSNP
rs1437467159 7890 dbSNP
rs972406474 7900 dbSNP
rs1022622010 7909 dbSNP
rs551839666 7913 dbSNP
rs1026294163 7924 dbSNP
rs1485384764 7925 dbSNP
rs952145569 7933 dbSNP
rs764014715 7941 dbSNP
rs1349105940 7943 dbSNP
rs956132562 7944 dbSNP
rs1212466636 7951 dbSNP
rs1363564589 7957 dbSNP
rs1270278995 7960 dbSNP
rs1246887943 7963 dbSNP
rs1285847354 7966 dbSNP
rs1352996656 7969 dbSNP
rs1354223330 7970 dbSNP
rs1314700241 7971 dbSNP
rs984860703 7972 dbSNP
rs539672607 7976 dbSNP
rs992864396 7977 dbSNP
rs1353726455 7980 dbSNP
rs926743934 7985 dbSNP
rs917295848 7987 dbSNP
rs948709888 8002 dbSNP
rs1422003911 8008 dbSNP
rs751384885 8016 dbSNP
rs115491639 8017 dbSNP
rs1474951477 8025 dbSNP
rs1255456799 8028 dbSNP
rs1284641837 8034 dbSNP
rs796868699 8034 dbSNP
rs1251120960 8038 dbSNP
rs920856467 8041 dbSNP
rs1309616831 8044 dbSNP
rs992310091 8045 dbSNP
rs918155718 8046 dbSNP
rs1232267905 8049 dbSNP
rs945624506 8051 dbSNP
rs1332070654 8052 dbSNP
rs780528798 8058 dbSNP
rs930857088 8059 dbSNP
rs1415335189 8060 dbSNP
rs1047925218 8063 dbSNP
rs1043035116 8070 dbSNP
rs1296377996 8085 dbSNP
rs1247103178 8086 dbSNP
rs78349695 8091 dbSNP
rs935699430 8094 dbSNP
rs189117310 8095 dbSNP
rs1415799314 8097 dbSNP
rs755671023 8098 dbSNP
rs1184958039 8100 dbSNP
rs1054201324 8107 dbSNP
rs1167127135 8109 dbSNP
rs944479769 8116 dbSNP
rs1366231281 8130 dbSNP
rs888890392 8132 dbSNP
rs1163193741 8133 dbSNP
rs900195704 8141 dbSNP
rs1007384465 8148 dbSNP
rs369315491 8149 dbSNP
rs1040200703 8160 dbSNP
rs568697973 8164 dbSNP
rs1021938908 8176 dbSNP
rs143657111 8177 dbSNP
rs1233436431 8180 dbSNP
rs146338917 8181 dbSNP
rs1304849790 8184 dbSNP
rs1030826875 8187 dbSNP
rs1373825381 8188 dbSNP
rs575819535 8192 dbSNP
rs1440467957 8193 dbSNP
rs1392474041 8195 dbSNP
rs1336191187 8202 dbSNP
rs577506263 8203 dbSNP
rs1024796965 8210 dbSNP
rs1006674283 8220 dbSNP
rs1033707600 8222 dbSNP
rs959477744 8227 dbSNP
rs1280075057 8242 dbSNP
rs1381332554 8249 dbSNP
rs980527134 8251 dbSNP
rs1467412158 8258 dbSNP
rs920566241 8287 dbSNP
rs992220296 8288 dbSNP
rs1210043592 8294 dbSNP
rs1485282956 8295 dbSNP
rs918045989 8296 dbSNP
rs1317389544 8300 dbSNP
rs1302423133 8301 dbSNP
rs967286869 8313 dbSNP
rs539975394 8316 dbSNP
rs978358512 8321 dbSNP
rs983694139 8330 dbSNP
rs1267080889 8331 dbSNP
rs925563706 8336 dbSNP
rs944846047 8341 dbSNP
rs1387522616 8358 dbSNP
rs1201856575 8360 dbSNP
rs1287132244 8363 dbSNP
rs1253378787 8376 dbSNP
rs1361811873 8380 dbSNP
rs1173545557 8384 dbSNP
rs1040519457 8388 dbSNP
rs1441350803 8392 dbSNP
rs778647619 8398 dbSNP
rs1199169181 8399 dbSNP
rs1187447510 8404 dbSNP
rs1259077020 8405 dbSNP
rs935661090 8407 dbSNP
rs1488331273 8420 dbSNP
rs1279596057 8422 dbSNP
rs900269649 8428 dbSNP
rs931711635 8443 dbSNP
rs1280711543 8452 dbSNP
rs1234252102 8455 dbSNP
rs371680041 8463 dbSNP
rs1326008359 8464 dbSNP
rs910230113 8480 dbSNP
rs2156500 8481 dbSNP
rs543896615 8483 dbSNP
rs563815936 8486 dbSNP
rs1312851846 8498 dbSNP
rs1411715383 8499 dbSNP
rs1377676773 8515 dbSNP
rs1470400175 8526 dbSNP
rs180751165 8534 dbSNP
rs1371056692 8537 dbSNP
rs1194864807 8541 dbSNP
rs1477891505 8545 dbSNP
rs368744894 8553 dbSNP
rs1047639084 8554 dbSNP
rs542164273 8559 dbSNP
rs896352295 8568 dbSNP
rs1185736779 8578 dbSNP
rs887715801 8579 dbSNP
rs747429105 8585 dbSNP
rs779483805 8597 dbSNP
rs1033612568 8613 dbSNP
rs959368057 8623 dbSNP
rs1195077183 8627 dbSNP
rs1337186181 8634 dbSNP
rs1013589281 8655 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545215. RNA binding protein: AGO4. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545215
Method / RBP PAR-CLIP / AGO4
Cell line / Condition HEK293 / Control
Location of target site ENST00000261292.4 | 3UTR | UCUUCUAAUCGAGGCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
33 hsa-miR-2909 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT254788 XRCC6 X-ray repair cross complementing 6 2 4
MIRT464426 UHMK1 U2AF homology motif kinase 1 2 2
MIRT478185 DDX6 DEAD-box helicase 6 2 6
MIRT481768 APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 2 2
MIRT489915 RTKN rhotekin 2 2
MIRT500566 VPS4A vacuolar protein sorting 4 homolog A 2 8
MIRT510700 SREK1IP1 SREK1 interacting protein 1 2 6
MIRT513331 CDK2 cyclin dependent kinase 2 2 4
MIRT524310 CTC1 CST telomere replication complex component 1 2 4
MIRT533571 TOMM40L translocase of outer mitochondrial membrane 40 like 2 2
MIRT537784 EIF4E3 eukaryotic translation initiation factor 4E family member 3 2 2
MIRT540489 ZMAT4 zinc finger matrin-type 4 2 8
MIRT547020 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT549561 C19orf12 chromosome 19 open reading frame 12 2 2
MIRT557346 HBP1 HMG-box transcription factor 1 2 4
MIRT564692 ZNF322P1 zinc finger protein 322 pseudogene 1 2 2
MIRT570167 LIPG lipase G, endothelial type 2 2
MIRT621677 UBE2QL1 ubiquitin conjugating enzyme E2 Q family like 1 2 2
MIRT629121 APPL1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 2 4
MIRT633745 MCM9 minichromosome maintenance 9 homologous recombination repair factor 2 2
MIRT634178 TXNDC16 thioredoxin domain containing 16 2 2
MIRT646387 SLC22A6 solute carrier family 22 member 6 2 2
MIRT651181 ZNF281 zinc finger protein 281 2 2
MIRT651892 UFD1L ubiquitin recognition factor in ER associated degradation 1 2 2
MIRT675180 KIF1C kinesin family member 1C 2 2
MIRT682670 CPM carboxypeptidase M 2 2
MIRT685990 NEK4 NIMA related kinase 4 2 2
MIRT698850 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT699396 SLC2A1 solute carrier family 2 member 1 2 2
MIRT723260 SREK1 splicing regulatory glutamic acid and lysine rich protein 1 2 2
MIRT725320 NFASC neurofascin 2 2
MIRT734596 CD276 CD276 molecule 2 0
MIRT734938 PTEN phosphatase and tensin homolog 2 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-2909 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-2909 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide sensitive cell line (Bads-200)

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