pre-miRNA Information
pre-miRNA hsa-mir-3689d-1   
Genomic Coordinates chr9: 134849609 - 134849682
Description Homo sapiens miR-3689d-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3689d-2   
Genomic Coordinates chr9: 134850277 - 134850356
Description Homo sapiens miR-3689d-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3689d
Sequence 2| GGGAGGUGUGAUCUCACACUCG |23
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs551722268 8 dbSNP
rs143142996 8 dbSNP
rs1236297052 12 dbSNP
rs573148947 14 dbSNP
rs1210004979 14 dbSNP
rs1217460444 14 dbSNP
rs762590109 18 dbSNP
rs574332265 18 dbSNP
rs1164353021 21 dbSNP
rs963741171 21 dbSNP
rs1177416877 22 dbSNP
rs765777344 22 dbSNP
Putative Targets

Gene Information
Gene Symbol SSPN   
Synonyms DAGA5, KRAG, NSPN, SPN1, SPN2
Description sarcospan
Transcript NM_001135823   
Other Transcripts NM_005086   
Expression
Putative miRNA Targets on SSPN
3'UTR of SSPN
(miRNA target sites are highlighted)
>SSPN|NM_001135823|3'UTR
   1 CATTCTTGCTCAAAGTTGCGAGAGAAAGTAGCACATGGAGTAGCTGAGGTTAAACAAACAAAAAAAAATTTTAAACAAAG
  81 AAAGGAAAAAAATTGACAATAAAAGTCACTCTTCTAATTGAATATTTTTATATTTTTATGAAACAAAAGAGCATTTCTTC
 161 AGGTTTCTATTGTATTTTTTTTAACATTCTTGCAGAGAAAGCAAGATCCAAATTGATTTTGGGATATTAAAAGTTAACAG
 241 AACACTGAACAAGGAAAGAATGGCATAGATCTATCTTTACAGTCTGGAGTTAATTCCTGTTAACTCATTTTATCCATTCC
 321 TTACATAATCTTCTTTCCTGTTAGTCCAGTTTGATGGTGTGAATGGTGAATTTCAGGCCCAGTTGCTAAATTTTGTGGCA
 401 TCTTCCTCTAGTCCTTCCCACCTCCAGTCATCAGCCCCACTCTGTCTTGGAGACAGGCAGGAGGTGGGGGAAGAGCTGAA
 481 TCTCTTTATTTTCCCTGGTAGAGACATCTTCAAGGCATGAAATAGCTTAAAGAGCAGAGTAGAAACGGAAGAGGCTTTGC
 561 AAAAGGCTAGATAACTAACAACACCTGGGTTGGGGCGGCGGCCTCTTCTCTTCAGCTCCCTTAGCTTGGCTCCGTAAGTG
 641 GATCACTTGCCAAATGCTTTAGATGATTGCCTCTCAATAATTGAAAGGTGGTGGTAGTTGTATTCTAAATGATGTAGAAG
 721 GTTTAAAAATAATTACATTATGCTTCTATTCTATCATCTAAAACAAATCATTAAAACTAATTTCTAGCTAATTGTTAATT
 801 ATAATTATGCTCAGAAGTCTATTTAATGAGCTCTGACTGTACTTACGCTGCACTGTCGGTGTTAAGAGAAATTACTCTCA
 881 CAAGAGCAGAGGCCTGAAGATTCTTTCTTCTGAAAGCCAAGCACCACAAGGAAAAAAAAAATTATTAATAGCTCAGGTTA
 961 AAAACACCCATTTAAACAAAAACAAGAGCATTTGTAATAGGAAGTGTTTATACAAACAGCACATTTGTGATATGTTGAAA
1041 AGCATCTCTCTTGGCAACCAATCTATGTTTGAGGAAGATTGGGTAATGCTGATGTGTTCCATTCATGAAACTGTATTTGA
1121 TACATAATCCTATTATTAATTCGTATGCTTAGTCAACCTAGGAAATCAAAATAATGTTTTGAAGTTCTTATTTGAGCAAT
1201 ATGGCCTTGACTTGGAGGGTAGTTTTAGTTGTTTTGTTTTTAAGTGACTGTGGTTTAAAGCACAAATGCCCCAAGGTGGG
1281 GAGACTTCTCTCTGTGATTATTGTTGCTATTAAATTCTGAACTGTATCCATATTTTAAGGAAGGAGCTAAAAATGGAAAT
1361 TCATGAAACATAAATGGTATCAAGAACTTTATCAGTATGCTTTGTTGAAAGCAGAAATTAAGATAATAATTGAGTTCAAT
1441 TCGCCTCTCCGCATTGCCTATTGATACACTTTACTAATCATGAAATTCTAACCTAAAAGGAAAACATTTTCCTGCTTGTC
1521 TTAGAAGAAAGTGGAATAATTCCACTGATTGTGATAATGGTTTCAATTTCTACACAATATAAATATCCAGTATAAAGGAA
1601 AGCGTTAAGTCGGTAAGCTAGAGGATTGTAAATATCTTTTATGTCCTCTAGATAAAACACCCGATTAACAGATGTTAAAC
1681 CTTTTAATGTTTTGATTTGCTTTAAAAATGGCCTTCCTACACATTAGCTCCAGCTAAAAAGACACATTGGAGAGCTTAGA
1761 GGATAAGTCTCTGGAGCAGAATTTATCACACACAAAAGTTACACCAACAGAATACCAAGCAGAATGATGAGGACCTGTAA
1841 AATACCTTGTGCCCTATTAAAAAAAAAAAAAAAAAAAAAGCCAGTAACTGAATCCATTTTGATTTTTGGTTGAGTTTCCT
1921 ACACAAAGAAGAAAATAACTGAGAATCTGGAATGTTGTAGTCCATCCTTTAAAGAGTAAGAAAGTAGCAGTTAATGCTAG
2001 TAACCGTGAATTAGGCACCACTGAAAGCACATCCCGAATTTCTTTAACAACAACATTTTATAGTGAACACTACAAGTTTT
2081 TATATTTAAAAATTAAGACTCTGTATATCCTTAAGGTGCTCTATGCTTTACCAGTAATTCACAGGGTATTTCAAATGGTA
2161 GAATCATTTTAGCTTCTGTGCTTCCTTTTTCTAAATAATGCAACTTGTAAGAGTTGACATTGTAATAAGCTTTATAATAG
2241 TATAACCGTCAGGAGATATATATATATATATATACACATACACACACACACACACATATATACTATACATATATAAAATG
2321 GGGATATTACTATTGTATGATTAAATCATTCTTAAGTCCCCAAGGAAAAAAAATCATAAACAAATAGAAAGAACTAAACA
2401 GAAAAGAAAGAAAGAAAAGATCCCTTTGCTATGAGCTCGCTGTATATTGATAAGTGTAAGAATTGTGTTGCATGAATAAC
2481 CGCTTTGGGCTGGATTTGAAGTATTTTGATGTTGTGTTTTGCAAATATTGAAGTTACAATAATGGCAACAGAAAAGGAAC
2561 AGATACACAGCTTTACACTTAGCAGAATGTTACATTTAAAATCTGACAAGGCGCCAAGATGGTGACTGTCTCCTCTAAAC
2641 CACGAAAGAGTAAGATTTGTGCAACCCTCCTCCTCTTCCACCTCCTTCAGGAGAATTAAATGAATCAAGACTTTGGAAAG
2721 ACGGGGAAGAGCCGGGACTTGGCAGTACTTGAAACAGGAGGAATACACCAGCCTAAATGTACAGACTTTGTAGCCGAGCC
2801 CACTCGATCGGTCTGTGCCTTCACGTGACCACCATCTGTGCCTCCCTCGCTCCATCCAAATTTGTGTAGGCTGCTCCTTG
2881 GAGCTATGCCTAAAATATAGCTACACCAGAGCCCTGGAAACTGTAGTCAAGTAACAGGCCTCACTGTTTTTTTTCTTTGG
2961 ATTAAAAGTGTATATCTCTCTACTGAGGGGTTTCCAGCTTTACACTTCTATAGGTTGTTCTGACAGTGAGAACACATTAT
3041 GTACATGTTTTCTATTCATGTCCAGGGCATGAGAATCTTAATATTCTTATACTTCCCTTTTTGCATGCAGTATGTCTGGA
3121 ATATGTTTATAAAATTTTAGCAAGGGGTGAGATCAAGGGACAAAGGTAGAGTGGTTATTTAAAGACAATCAGAAATGAAC
3201 TTAAAAGCTGCCCTGCAAAACCAATCCTTTCCTATCATGAAGAGTACCTTCATATTTTCTAGAGATTGTCTCTGAACCGT
3281 TGCTACATAGCCATAAATTTCTGTAAATCATGTTGGCTATCAGTTCTTGCTATTCTCAGAGCACTCTATCATGTTTTTAG
3361 GTGTATATTGTGTATTCAGGATAGCATTAAAAAGAACTGATGGCAAATGTATTGACTCACAGTGGAAACATTCATTTGGA
3441 TGAAGAATTAGTGGTTTAGCCTTTGAAATGAATACCTTGAATCATTTCTTCTGATTTTCTAGTAGTTTATTATCTCAAAT
3521 GATTATTATCCCCTTCAAAAATACTGGTCTGTACTTTGGTGTTGTGGTTTCATTTTTCTGGCATTGATCAAATAGCAAAT
3601 ACAAAATAAAGCATTTCTACATGTTTGAGGTGGTTGTTTTTAAAGGGGATATGTGTAATGCAGATTTTCTTTATTAATAA
3681 AATTTTCATAATCTCTGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gcucacacucuAGUGUGGAGGg 5'
                     || ||||||| 
Target 5' cctctagtcctTCCCACCTCCa 3'
405 - 426 147.00 -13.30
2
miRNA  3' gcucacacucuAGUGUGGAGGg 5'
                     |: ||||||| 
Target 5' ccctcctcctcTTCCACCTCCt 3'
2665 - 2686 143.00 -12.70
3
miRNA  3' gcucacACUCUAGU---GUGGAGGg 5'
                |||| |||   |:||||: 
Target 5' aataatTGAGTTCAATTCGCCTCTc 3'
1425 - 1449 128.00 -16.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30717465 9 COSMIC
COSN30515941 20 COSMIC
COSN31581014 25 COSMIC
COSN31614206 46 COSMIC
COSN31583325 65 COSMIC
COSN13387003 70 COSMIC
COSN24833010 73 COSMIC
COSN31486219 95 COSMIC
COSN30127518 106 COSMIC
COSN30332122 254 COSMIC
COSN14859945 567 COSMIC
COSN24169505 606 COSMIC
COSN5865384 619 COSMIC
COSN24620668 709 COSMIC
COSN20109388 942 COSMIC
COSN30335140 1018 COSMIC
COSN7324737 1216 COSMIC
COSN8707330 1432 COSMIC
COSN7324738 1452 COSMIC
COSN24561915 1604 COSMIC
COSN21444115 1672 COSMIC
COSN20338289 1778 COSMIC
COSN25404790 1922 COSMIC
COSN16434427 2048 COSMIC
COSN8707331 2070 COSMIC
COSN27281402 2275 COSMIC
COSN25708227 2276 COSMIC
COSN1146557 2288 COSMIC
COSN7324739 2340 COSMIC
COSN5939759 2997 COSMIC
COSN26401081 3283 COSMIC
COSN26398937 3284 COSMIC
COSN30331700 3435 COSMIC
COSN1568486 3623 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1158715693 2 dbSNP
rs1384860041 3 dbSNP
rs992904170 9 dbSNP
rs992825559 11 dbSNP
rs1381040129 13 dbSNP
rs1325867637 14 dbSNP
rs532414600 20 dbSNP
rs200971806 21 dbSNP
rs779985562 23 dbSNP
rs749436979 28 dbSNP
rs768732881 29 dbSNP
rs774592083 30 dbSNP
rs1242719327 32 dbSNP
rs746761971 33 dbSNP
rs770713372 35 dbSNP
rs978927164 37 dbSNP
rs1274830432 38 dbSNP
rs1437794007 39 dbSNP
rs559363092 43 dbSNP
rs765265560 47 dbSNP
rs113089509 51 dbSNP
rs761140832 52 dbSNP
rs1250745955 53 dbSNP
rs942922752 56 dbSNP
rs193126907 57 dbSNP
rs202155192 60 dbSNP
rs932234405 60 dbSNP
rs900815204 62 dbSNP
rs1173146438 63 dbSNP
rs548264165 64 dbSNP
rs912126740 69 dbSNP
rs28530577 70 dbSNP
rs1488431209 73 dbSNP
rs886839137 73 dbSNP
rs1005339310 79 dbSNP
rs943739816 81 dbSNP
rs1484930285 84 dbSNP
rs1452485123 100 dbSNP
rs1278360039 106 dbSNP
rs1040706244 108 dbSNP
rs1190506748 113 dbSNP
rs1268510153 114 dbSNP
rs1390522580 120 dbSNP
rs115326344 122 dbSNP
rs905040851 131 dbSNP
rs530565510 139 dbSNP
rs534493298 149 dbSNP
rs1459657576 152 dbSNP
rs1334501272 155 dbSNP
rs185625046 157 dbSNP
rs781421437 158 dbSNP
rs1439307112 159 dbSNP
rs1474639696 175 dbSNP
rs544273341 175 dbSNP
rs1034704431 179 dbSNP
rs895731837 195 dbSNP
rs1366583402 209 dbSNP
rs745457067 210 dbSNP
rs1444662521 241 dbSNP
rs1271548236 251 dbSNP
rs61914488 254 dbSNP
rs1293882629 264 dbSNP
rs1318767449 274 dbSNP
rs1260069312 284 dbSNP
rs967473955 287 dbSNP
rs1378660669 290 dbSNP
rs978812214 296 dbSNP
rs1245140085 298 dbSNP
rs978874655 304 dbSNP
rs535292029 307 dbSNP
rs1333749419 309 dbSNP
rs141663588 321 dbSNP
rs1466074555 325 dbSNP
rs1401853314 329 dbSNP
rs1210079974 330 dbSNP
rs553414645 334 dbSNP
rs1460613826 335 dbSNP
rs1033078972 336 dbSNP
rs953547520 340 dbSNP
rs1183202860 341 dbSNP
rs1248528626 348 dbSNP
rs1485506189 354 dbSNP
rs1474006331 357 dbSNP
rs114210444 360 dbSNP
rs975633791 367 dbSNP
rs922835230 372 dbSNP
rs189336813 394 dbSNP
rs1425781613 399 dbSNP
rs1165979199 410 dbSNP
rs1417227756 413 dbSNP
rs1211853575 420 dbSNP
rs1047165690 426 dbSNP
rs944944771 427 dbSNP
rs1290922049 433 dbSNP
rs1230229896 435 dbSNP
rs1459894503 436 dbSNP
rs556976715 440 dbSNP
rs1447444547 447 dbSNP
rs575332449 449 dbSNP
rs867792778 450 dbSNP
rs1378956117 454 dbSNP
rs779738695 455 dbSNP
rs558968745 456 dbSNP
rs1435175853 457 dbSNP
rs941071243 463 dbSNP
rs35731044 466 dbSNP
rs558684191 467 dbSNP
rs1346235323 468 dbSNP
rs114658262 473 dbSNP
rs1287472401 476 dbSNP
rs1158356717 477 dbSNP
rs888178077 478 dbSNP
rs1440882510 479 dbSNP
rs1240619264 500 dbSNP
rs545864919 501 dbSNP
rs1381879589 508 dbSNP
rs937212158 515 dbSNP
rs1002007693 530 dbSNP
rs1414984866 533 dbSNP
rs1445440694 542 dbSNP
rs11835695 547 dbSNP
rs79307968 548 dbSNP
rs1229630020 554 dbSNP
rs1014147188 555 dbSNP
rs1218561725 556 dbSNP
rs1367775727 561 dbSNP
rs1266283074 564 dbSNP
rs1042124914 567 dbSNP
rs1020696437 570 dbSNP
rs1428230654 571 dbSNP
rs1359458283 572 dbSNP
rs1213640615 578 dbSNP
rs1238959766 583 dbSNP
rs1382544019 588 dbSNP
rs556805990 593 dbSNP
rs1433050622 595 dbSNP
rs530054238 597 dbSNP
rs112120454 598 dbSNP
rs541839999 600 dbSNP
rs964152348 601 dbSNP
rs953433520 602 dbSNP
rs1161383214 606 dbSNP
rs758449892 611 dbSNP
rs1008147342 615 dbSNP
rs1277919054 619 dbSNP
rs1209340781 631 dbSNP
rs1408880980 633 dbSNP
rs114249011 634 dbSNP
rs774491138 635 dbSNP
rs966714954 635 dbSNP
rs1401463581 639 dbSNP
rs1362855125 640 dbSNP
rs1209542978 643 dbSNP
rs972315093 646 dbSNP
rs530610661 647 dbSNP
rs908162750 653 dbSNP
rs78030178 670 dbSNP
rs1435685813 678 dbSNP
rs1242934397 699 dbSNP
rs1422988660 701 dbSNP
rs951075868 708 dbSNP
rs771844769 721 dbSNP
rs983748720 722 dbSNP
rs1253832965 736 dbSNP
rs926363008 738 dbSNP
rs767810519 744 dbSNP
rs909670148 744 dbSNP
rs180871806 745 dbSNP
rs1202340831 750 dbSNP
rs1415226951 752 dbSNP
rs1056051729 753 dbSNP
rs917060941 756 dbSNP
rs184190262 758 dbSNP
rs1411339950 759 dbSNP
rs1220107869 761 dbSNP
rs1353131023 765 dbSNP
rs1056225111 771 dbSNP
rs1380318881 774 dbSNP
rs896355017 782 dbSNP
rs945252565 789 dbSNP
rs949909630 790 dbSNP
rs1041678001 794 dbSNP
rs546851789 798 dbSNP
rs903097306 808 dbSNP
rs1000229361 811 dbSNP
rs1000184821 815 dbSNP
rs568405799 819 dbSNP
rs1348537942 829 dbSNP
rs899915308 831 dbSNP
rs1277937084 843 dbSNP
rs12315501 847 dbSNP
rs775890367 848 dbSNP
rs1007620562 852 dbSNP
rs1030208863 855 dbSNP
rs1264539538 858 dbSNP
rs542371610 859 dbSNP
rs550540504 866 dbSNP
rs569193113 872 dbSNP
rs1175577565 877 dbSNP
rs1427789158 878 dbSNP
rs1019546900 890 dbSNP
rs188523209 900 dbSNP
rs750833741 901 dbSNP
rs1374100070 912 dbSNP
rs1431224708 926 dbSNP
rs1388654915 928 dbSNP
rs994054245 928 dbSNP
rs1015862061 929 dbSNP
rs1458545564 930 dbSNP
rs1439340878 931 dbSNP
rs1156563667 932 dbSNP
rs57504579 932 dbSNP
rs76558009 932 dbSNP
rs796896426 932 dbSNP
rs200842727 933 dbSNP
rs1380889330 934 dbSNP
rs867387031 939 dbSNP
rs112011982 942 dbSNP
rs200582330 942 dbSNP
rs112799650 943 dbSNP
rs539892002 949 dbSNP
rs1233545041 955 dbSNP
rs926331773 966 dbSNP
rs937755627 971 dbSNP
rs1238379292 974 dbSNP
rs557973939 983 dbSNP
rs746840457 984 dbSNP
rs991930873 986 dbSNP
rs576928981 987 dbSNP
rs952291182 989 dbSNP
rs983760042 992 dbSNP
rs1329424151 1002 dbSNP
rs1322909490 1003 dbSNP
rs534506085 1006 dbSNP
rs1064750 1018 dbSNP
rs1296550907 1020 dbSNP
rs1248589151 1021 dbSNP
rs1418917639 1042 dbSNP
rs1380663872 1045 dbSNP
rs903752340 1058 dbSNP
rs1476960496 1067 dbSNP
rs752051750 1077 dbSNP
rs1198890600 1082 dbSNP
rs1193608376 1084 dbSNP
rs1393638036 1088 dbSNP
rs1260641683 1093 dbSNP
rs1215426894 1099 dbSNP
rs1488207146 1100 dbSNP
rs936611598 1104 dbSNP
rs991283438 1106 dbSNP
rs1168889076 1108 dbSNP
rs1234110692 1117 dbSNP
rs1054449999 1118 dbSNP
rs899840421 1125 dbSNP
rs1276602301 1130 dbSNP
rs916967373 1131 dbSNP
rs1360930793 1132 dbSNP
rs541314454 1133 dbSNP
rs996891874 1134 dbSNP
rs949951282 1135 dbSNP
rs1407870562 1139 dbSNP
rs139413034 1143 dbSNP
rs181656845 1144 dbSNP
rs1420830779 1146 dbSNP
rs1192487805 1161 dbSNP
rs1440039150 1161 dbSNP
rs1477911734 1166 dbSNP
rs891261801 1172 dbSNP
rs1195733520 1173 dbSNP
rs1441020943 1176 dbSNP
rs1004373666 1177 dbSNP
rs34923132 1182 dbSNP
rs780717089 1189 dbSNP
rs1054481224 1202 dbSNP
rs962932400 1205 dbSNP
rs1218263488 1209 dbSNP
rs1341307027 1213 dbSNP
rs750740196 1217 dbSNP
rs1445594726 1220 dbSNP
rs1339629133 1228 dbSNP
rs1334830296 1261 dbSNP
rs943353828 1262 dbSNP
rs1397522168 1266 dbSNP
rs1227836300 1268 dbSNP
rs1269392471 1274 dbSNP
rs114782138 1280 dbSNP
rs113880767 1291 dbSNP
rs3832810 1293 dbSNP
rs397840777 1293 dbSNP
rs376375083 1302 dbSNP
rs1469005836 1306 dbSNP
rs1188854585 1308 dbSNP
rs1213171939 1325 dbSNP
rs533065340 1329 dbSNP
rs993660413 1331 dbSNP
rs1318659986 1332 dbSNP
rs1060086 1343 dbSNP
rs1026408440 1345 dbSNP
rs1226807894 1347 dbSNP
rs143964911 1357 dbSNP
rs1284514095 1369 dbSNP
rs1241952585 1375 dbSNP
rs1454536646 1378 dbSNP
rs1006399114 1382 dbSNP
rs1330561799 1393 dbSNP
rs1446949555 1404 dbSNP
rs1355763909 1408 dbSNP
rs936536471 1415 dbSNP
rs1038969665 1418 dbSNP
rs1164675911 1419 dbSNP
rs1413538472 1427 dbSNP
rs921240920 1443 dbSNP
rs545839007 1444 dbSNP
rs1379042748 1451 dbSNP
rs564038312 1452 dbSNP
rs1051564036 1454 dbSNP
rs1234606844 1455 dbSNP
rs1219663360 1461 dbSNP
rs1162206940 1464 dbSNP
rs1451205626 1475 dbSNP
rs1390672792 1479 dbSNP
rs891193916 1481 dbSNP
rs1351208854 1483 dbSNP
rs1308524503 1490 dbSNP
rs991557334 1493 dbSNP
rs1024090305 1502 dbSNP
rs546218680 1506 dbSNP
rs1272511447 1513 dbSNP
rs1435330698 1537 dbSNP
rs1037196479 1539 dbSNP
rs1304547790 1551 dbSNP
rs1426999263 1552 dbSNP
rs971518752 1553 dbSNP
rs528230032 1559 dbSNP
rs1428868090 1560 dbSNP
rs1295303665 1566 dbSNP
rs1410287331 1570 dbSNP
rs1335771022 1575 dbSNP
rs1189511163 1579 dbSNP
rs1232684389 1592 dbSNP
rs995678474 1597 dbSNP
rs17381729 1603 dbSNP
rs1487226620 1604 dbSNP
rs532313758 1605 dbSNP
rs1217259511 1611 dbSNP
rs529528962 1613 dbSNP
rs9850 1631 dbSNP
rs1218170728 1636 dbSNP
rs771903273 1642 dbSNP
rs773262584 1643 dbSNP
rs1397743422 1644 dbSNP
rs1338919381 1651 dbSNP
rs1025101560 1652 dbSNP
rs966478434 1654 dbSNP
rs569184609 1655 dbSNP
rs978250795 1660 dbSNP
rs115340662 1663 dbSNP
rs1190540010 1664 dbSNP
rs1414038517 1665 dbSNP
rs1430071334 1673 dbSNP
rs1257728871 1678 dbSNP
rs957874039 1682 dbSNP
rs1474678335 1685 dbSNP
rs1040770039 1688 dbSNP
rs1194061899 1693 dbSNP
rs370757535 1695 dbSNP
rs1254225561 1696 dbSNP
rs929355468 1697 dbSNP
rs1454221409 1709 dbSNP
rs1312334308 1711 dbSNP
rs1051102980 1718 dbSNP
rs186645370 1720 dbSNP
rs1316879495 1748 dbSNP
rs1278404316 1753 dbSNP
rs1382732593 1759 dbSNP
rs191760141 1760 dbSNP
rs1301677617 1762 dbSNP
rs1415923180 1763 dbSNP
rs553185755 1770 dbSNP
rs1006326904 1772 dbSNP
rs1356269857 1773 dbSNP
rs1464288544 1773 dbSNP
rs1037080447 1775 dbSNP
rs1430144093 1777 dbSNP
rs9214 1778 dbSNP
rs1337648960 1786 dbSNP
rs182271039 1790 dbSNP
rs1260598408 1793 dbSNP
rs34141209 1794 dbSNP
rs1196252682 1810 dbSNP
rs1012590278 1823 dbSNP
rs556980318 1827 dbSNP
rs575138713 1840 dbSNP
rs545476032 1842 dbSNP
rs1349199410 1846 dbSNP
rs1024350635 1847 dbSNP
rs1229154161 1848 dbSNP
rs1309641189 1850 dbSNP
rs1390711240 1850 dbSNP
rs1213381971 1852 dbSNP
rs1281566387 1853 dbSNP
rs1384127083 1855 dbSNP
rs1339227523 1857 dbSNP
rs1321752615 1858 dbSNP
rs1485139483 1858 dbSNP
rs1176689479 1859 dbSNP
rs1197201003 1859 dbSNP
rs1215046617 1859 dbSNP
rs1221343700 1859 dbSNP
rs1250536730 1859 dbSNP
rs1264080923 1859 dbSNP
rs1331251860 1859 dbSNP
rs1491088778 1859 dbSNP
rs34314422 1859 dbSNP
rs370585952 1859 dbSNP
rs386375981 1859 dbSNP
rs72464106 1859 dbSNP
rs1208333582 1860 dbSNP
rs1252023182 1861 dbSNP
rs1419105389 1862 dbSNP
rs1180511358 1863 dbSNP
rs1361929699 1865 dbSNP
rs1055242633 1871 dbSNP
rs1317845383 1877 dbSNP
rs1255738243 1881 dbSNP
rs1457073861 1882 dbSNP
rs1376258660 1884 dbSNP
rs1434304538 1885 dbSNP
rs1311340105 1886 dbSNP
rs1398934179 1891 dbSNP
rs1307720785 1895 dbSNP
rs1393390086 1909 dbSNP
rs971153673 1910 dbSNP
rs1391995593 1912 dbSNP
rs977141308 1913 dbSNP
rs1031414225 1914 dbSNP
rs370917909 1917 dbSNP
rs989982186 1919 dbSNP
rs1367200703 1925 dbSNP
rs1156776461 1926 dbSNP
rs910504318 1929 dbSNP
rs1363897168 1930 dbSNP
rs943247318 1931 dbSNP
rs1430922503 1937 dbSNP
rs1304586436 1940 dbSNP
rs976112971 1948 dbSNP
rs923242027 1950 dbSNP
rs1490635303 1951 dbSNP
rs929294916 1953 dbSNP
rs1014287715 1958 dbSNP
rs1347677311 1962 dbSNP
rs1024608863 1963 dbSNP
rs1047824687 1964 dbSNP
rs1350528875 1980 dbSNP
rs746819203 1985 dbSNP
rs1261794584 1999 dbSNP
rs966778441 2006 dbSNP
rs572829595 2007 dbSNP
rs999257424 2008 dbSNP
rs1252662374 2036 dbSNP
rs373156870 2046 dbSNP
rs1296059295 2049 dbSNP
rs1419050319 2052 dbSNP
rs957800756 2056 dbSNP
rs1160207114 2059 dbSNP
rs909297228 2064 dbSNP
rs1376573056 2069 dbSNP
rs942235347 2073 dbSNP
rs921803719 2074 dbSNP
rs539974177 2077 dbSNP
rs561913840 2078 dbSNP
rs1469758916 2093 dbSNP
rs895400224 2094 dbSNP
rs1192002311 2099 dbSNP
rs1014229273 2101 dbSNP
rs1045416041 2104 dbSNP
rs1263117131 2105 dbSNP
rs1207401907 2116 dbSNP
rs1194226229 2117 dbSNP
rs906898380 2118 dbSNP
rs1262522063 2119 dbSNP
rs113372892 2120 dbSNP
rs1325874306 2124 dbSNP
rs1452285775 2126 dbSNP
rs1429833329 2127 dbSNP
rs140946961 2132 dbSNP
rs112544008 2135 dbSNP
rs111970099 2139 dbSNP
rs1400890867 2143 dbSNP
rs972763742 2145 dbSNP
rs1470769971 2146 dbSNP
rs1297677760 2150 dbSNP
rs775802437 2153 dbSNP
rs919991660 2163 dbSNP
rs763278407 2171 dbSNP
rs976432383 2177 dbSNP
rs923193989 2193 dbSNP
rs1195968315 2200 dbSNP
rs548337033 2201 dbSNP
rs61914489 2208 dbSNP
rs764201006 2210 dbSNP
rs1204426591 2217 dbSNP
rs983408313 2219 dbSNP
rs1256470085 2220 dbSNP
rs1370954007 2233 dbSNP
rs949621044 2236 dbSNP
rs909306755 2238 dbSNP
rs942078792 2248 dbSNP
rs551461963 2249 dbSNP
rs1242545087 2253 dbSNP
rs1381899557 2253 dbSNP
rs10547333 2256 dbSNP
rs1274895633 2256 dbSNP
rs1337286971 2256 dbSNP
rs398018949 2256 dbSNP
rs533257991 2256 dbSNP
rs776615940 2256 dbSNP
rs916705276 2256 dbSNP
rs1207883802 2258 dbSNP
rs949567988 2260 dbSNP
rs71069217 2267 dbSNP
rs1491054468 2268 dbSNP
rs1247994930 2270 dbSNP
rs1315725429 2270 dbSNP
rs1374032000 2272 dbSNP
rs368095043 2274 dbSNP
rs11048437 2276 dbSNP
rs1355954422 2276 dbSNP
rs1249076123 2277 dbSNP
rs1423202731 2278 dbSNP
rs1471698134 2278 dbSNP
rs1272789718 2280 dbSNP
rs34695916 2280 dbSNP
rs550069444 2280 dbSNP
rs766583720 2280 dbSNP
rs1403885357 2282 dbSNP
rs34295709 2282 dbSNP
rs1304082728 2284 dbSNP
rs868702033 2284 dbSNP
rs1011719854 2286 dbSNP
rs1158992084 2289 dbSNP
rs1401425385 2291 dbSNP
rs1213790172 2296 dbSNP
rs1032036697 2297 dbSNP
rs1171048265 2298 dbSNP
rs187365608 2300 dbSNP
rs1269369232 2307 dbSNP
rs375466619 2309 dbSNP
rs1201366427 2310 dbSNP
rs1017452471 2313 dbSNP
rs1252252099 2322 dbSNP
rs1241501262 2330 dbSNP
rs1216409165 2339 dbSNP
rs964925748 2344 dbSNP
rs1318207191 2358 dbSNP
rs1275825893 2359 dbSNP
rs1222552058 2363 dbSNP
rs1323755319 2366 dbSNP
rs893558436 2370 dbSNP
rs1407197956 2372 dbSNP
rs1360306947 2374 dbSNP
rs1288800880 2376 dbSNP
rs1467085963 2382 dbSNP
rs995962613 2386 dbSNP
rs997355639 2391 dbSNP
rs1030239147 2392 dbSNP
rs1430299901 2397 dbSNP
rs1178830692 2403 dbSNP
rs1418451601 2403 dbSNP
rs1426591939 2403 dbSNP
rs367905318 2403 dbSNP
rs754027811 2411 dbSNP
rs1429306555 2423 dbSNP
rs1170069661 2425 dbSNP
rs987382762 2429 dbSNP
rs950602098 2432 dbSNP
rs1015270231 2437 dbSNP
rs774289562 2439 dbSNP
rs983417851 2440 dbSNP
rs1016193918 2451 dbSNP
rs1215700164 2457 dbSNP
rs762009537 2473 dbSNP
rs549523082 2481 dbSNP
rs1364744561 2482 dbSNP
rs144299526 2483 dbSNP
rs919960442 2490 dbSNP
rs1406912118 2507 dbSNP
rs1338954808 2529 dbSNP
rs991343069 2534 dbSNP
rs368748115 2540 dbSNP
rs1460610162 2578 dbSNP
rs535659543 2581 dbSNP
rs1435026948 2582 dbSNP
rs1290991908 2584 dbSNP
rs1363136844 2586 dbSNP
rs1381280151 2588 dbSNP
rs1170836752 2613 dbSNP
rs1292932670 2614 dbSNP
rs557164123 2617 dbSNP
rs949625576 2618 dbSNP
rs982297618 2622 dbSNP
rs1244383853 2638 dbSNP
rs1046587283 2644 dbSNP
rs902744110 2645 dbSNP
rs1205717988 2646 dbSNP
rs935610770 2660 dbSNP
rs1313635554 2675 dbSNP
rs569055039 2677 dbSNP
rs1245801745 2694 dbSNP
rs1233290967 2697 dbSNP
rs1383640748 2698 dbSNP
rs1272001943 2705 dbSNP
rs1389923511 2707 dbSNP
rs1372923461 2723 dbSNP
rs1053443597 2724 dbSNP
rs1463386039 2732 dbSNP
rs1363482883 2734 dbSNP
rs924197702 2735 dbSNP
rs1425168707 2739 dbSNP
rs935530696 2741 dbSNP
rs1261071290 2743 dbSNP
rs1179097703 2757 dbSNP
rs1417975440 2761 dbSNP
rs539749370 2767 dbSNP
rs1178567505 2773 dbSNP
rs1289977394 2780 dbSNP
rs1052789730 2790 dbSNP
rs892778501 2796 dbSNP
rs1485394887 2797 dbSNP
rs947053536 2800 dbSNP
rs1360749696 2807 dbSNP
rs1039233894 2810 dbSNP
rs1029178303 2811 dbSNP
rs900241202 2814 dbSNP
rs890266673 2823 dbSNP
rs145532968 2825 dbSNP
rs1030080299 2841 dbSNP
rs1417332397 2842 dbSNP
rs886374919 2847 dbSNP
rs57376342 2849 dbSNP
rs1161970989 2850 dbSNP
rs1405295391 2867 dbSNP
rs1346327123 2876 dbSNP
rs1367422434 2887 dbSNP
rs750980309 2891 dbSNP
rs961927382 2909 dbSNP
rs963733818 2912 dbSNP
rs756394650 2919 dbSNP
rs990835298 2927 dbSNP
rs1453442860 2933 dbSNP
rs1452506643 2935 dbSNP
rs1024175740 2937 dbSNP
rs970805783 2939 dbSNP
rs952731456 2940 dbSNP
rs1199202022 2941 dbSNP
rs1356910101 2945 dbSNP
rs1490609500 2947 dbSNP
rs982279456 2948 dbSNP
rs76611220 2957 dbSNP
rs115776064 2968 dbSNP
rs1261333957 2971 dbSNP
rs559237446 2971 dbSNP
rs189714574 2973 dbSNP
rs924168733 2974 dbSNP
rs1180584314 2977 dbSNP
rs1347151121 2979 dbSNP
rs915491916 2983 dbSNP
rs1385082674 2989 dbSNP
rs565650567 2999 dbSNP
rs182064804 3003 dbSNP
rs187066494 3006 dbSNP
rs947073454 3010 dbSNP
rs1379667785 3020 dbSNP
rs1316277439 3025 dbSNP
rs1038661925 3027 dbSNP
rs368583312 3028 dbSNP
rs1191683552 3036 dbSNP
rs900249939 3042 dbSNP
rs1054045858 3067 dbSNP
rs933060454 3068 dbSNP
rs1263004940 3082 dbSNP
rs1213319360 3090 dbSNP
rs1282276379 3093 dbSNP
rs1210723267 3105 dbSNP
rs1460024136 3106 dbSNP
rs759852753 3108 dbSNP
rs1224282864 3115 dbSNP
rs1346874584 3120 dbSNP
rs1486776837 3123 dbSNP
rs1051558668 3124 dbSNP
rs1226646276 3126 dbSNP
rs886301450 3139 dbSNP
rs1004656154 3147 dbSNP
rs931649021 3161 dbSNP
rs1449907630 3172 dbSNP
rs1404717839 3175 dbSNP
rs1179054671 3179 dbSNP
rs1409268767 3187 dbSNP
rs1050126883 3192 dbSNP
rs189991455 3197 dbSNP
rs1166554286 3200 dbSNP
rs182448830 3204 dbSNP
rs1374207254 3209 dbSNP
rs1012670071 3217 dbSNP
rs1442858139 3221 dbSNP
rs1242548233 3227 dbSNP
rs111469320 3238 dbSNP
rs765376507 3240 dbSNP
rs1023599107 3248 dbSNP
rs971240894 3251 dbSNP
rs1036569758 3254 dbSNP
rs1195064561 3255 dbSNP
rs1339819031 3264 dbSNP
rs560258574 3268 dbSNP
rs1434925814 3272 dbSNP
rs897665424 3279 dbSNP
rs188510280 3280 dbSNP
rs1357101443 3288 dbSNP
rs549460045 3297 dbSNP
rs958641429 3299 dbSNP
rs956896044 3303 dbSNP
rs567756505 3311 dbSNP
rs1333670687 3312 dbSNP
rs753433270 3320 dbSNP
rs1327749275 3322 dbSNP
rs1409816161 3330 dbSNP
rs1397571665 3335 dbSNP
rs566878946 3338 dbSNP
rs1012642247 3340 dbSNP
rs1384722648 3344 dbSNP
rs1443661815 3347 dbSNP
rs374729548 3349 dbSNP
rs915484844 3350 dbSNP
rs964286570 3364 dbSNP
rs1438188630 3367 dbSNP
rs982227547 3368 dbSNP
rs974832311 3373 dbSNP
rs1358690234 3387 dbSNP
rs1292378611 3395 dbSNP
rs924068597 3400 dbSNP
rs1348379857 3404 dbSNP
rs531891954 3410 dbSNP
rs1351509707 3415 dbSNP
rs550480023 3417 dbSNP
rs778607455 3418 dbSNP
rs932974066 3420 dbSNP
rs569068519 3425 dbSNP
rs1050504873 3426 dbSNP
rs1405797385 3426 dbSNP
rs1158226752 3427 dbSNP
rs907628436 3430 dbSNP
rs386761340 3434 dbSNP
rs7470 3435 dbSNP
rs74072108 3436 dbSNP
rs777527954 3438 dbSNP
rs1197070787 3444 dbSNP
rs1490120892 3451 dbSNP
rs1036131557 3454 dbSNP
rs1223584475 3462 dbSNP
rs899080699 3463 dbSNP
rs1233580388 3477 dbSNP
rs1012144925 3480 dbSNP
rs1282877644 3481 dbSNP
rs1224021571 3482 dbSNP
rs1480589367 3484 dbSNP
rs1045487237 3489 dbSNP
rs1177359367 3495 dbSNP
rs1397453245 3496 dbSNP
rs577304315 3503 dbSNP
rs746985110 3506 dbSNP
rs1003528841 3511 dbSNP
rs193090676 3523 dbSNP
rs1345274139 3527 dbSNP
rs1294636388 3530 dbSNP
rs533534957 3534 dbSNP
rs994614201 3542 dbSNP
rs1343534065 3546 dbSNP
rs1317681833 3547 dbSNP
rs1173412497 3565 dbSNP
rs7299860 3569 dbSNP
rs1479990122 3570 dbSNP
rs1011079582 3573 dbSNP
rs1022435469 3579 dbSNP
rs894392446 3580 dbSNP
rs776570246 3584 dbSNP
rs1241413796 3590 dbSNP
rs964658031 3593 dbSNP
rs1260943210 3596 dbSNP
rs1202573288 3612 dbSNP
rs1323290350 3618 dbSNP
rs745723565 3621 dbSNP
rs922825199 3622 dbSNP
rs1444455372 3623 dbSNP
rs184086101 3632 dbSNP
rs987090762 3638 dbSNP
rs1360541288 3653 dbSNP
rs188872458 3662 dbSNP
rs369140267 3666 dbSNP
rs1439802878 3667 dbSNP
rs1272872025 3670 dbSNP
rs1334984052 3683 dbSNP
rs191469398 3689 dbSNP
rs371330928 3694 dbSNP
rs564254475 3697 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545215. RNA binding protein: AGO4. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gcucacacucuaGUGUGGAGGg 5'
                      | | ||||| 
Target 5' ------------CCCUCCUCCu 3'
1 - 10
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545215
Method / RBP PAR-CLIP / AGO4
Cell line / Condition HEK293 / Control
Location of target site ENST00000242729.2 | 3UTR | CCCUCCUCCUCUUCCACC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
231 hsa-miR-3689d Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059166 TXNIP thioredoxin interacting protein 2 4
MIRT080699 KIAA1468 KIAA1468 2 2
MIRT218770 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT278059 KHNYN KH and NYN domain containing 2 2
MIRT345933 EIF4A1 eukaryotic translation initiation factor 4A1 2 2
MIRT366238 VMA21 VMA21, vacuolar ATPase assembly factor 2 2
MIRT449689 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT451149 C19orf53 chromosome 19 open reading frame 53 2 2
MIRT451266 NDUFA11 NADH:ubiquinone oxidoreductase subunit A11 2 2
MIRT451375 C19orf43 telomerase RNA component interacting RNase 2 2
MIRT451570 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451585 HIRIP3 HIRA interacting protein 3 2 2
MIRT451614 MEIS3P1 Meis homeobox 3 pseudogene 1 2 2
MIRT451763 ZNF611 zinc finger protein 611 2 6
MIRT452383 LY6E lymphocyte antigen 6 family member E 2 4
MIRT452573 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452735 PTGES3L prostaglandin E synthase 3 like 2 6
MIRT452867 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452975 CABP4 calcium binding protein 4 2 2
MIRT453215 CERS1 ceramide synthase 1 2 2
MIRT453259 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT453449 GLG1 golgi glycoprotein 1 2 2
MIRT453479 PITPNM3 PITPNM family member 3 2 2
MIRT453663 CD207 CD207 molecule 2 6
MIRT453724 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 2 2
MIRT453760 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT454181 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 6
MIRT454330 PPARA peroxisome proliferator activated receptor alpha 2 2
MIRT454338 CDKL1 cyclin dependent kinase like 1 2 2
MIRT454427 GTF2F1 general transcription factor IIF subunit 1 2 2
MIRT454665 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454825 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT455130 TBC1D25 TBC1 domain family member 25 2 2
MIRT455166 SUV39H1 suppressor of variegation 3-9 homolog 1 2 2
MIRT455416 RXRB retinoid X receptor beta 2 2
MIRT455668 GLO1 glyoxalase I 2 2
MIRT455999 CYP2C19 cytochrome P450 family 2 subfamily C member 19 2 2
MIRT456446 TMEM81 transmembrane protein 81 2 2
MIRT456642 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT456728 TMEM239 transmembrane protein 239 2 2
MIRT457131 ASPH aspartate beta-hydroxylase 2 2
MIRT457157 MXRA7 matrix remodeling associated 7 2 2
MIRT457358 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT457458 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT457619 UPK3BL uroplakin 3B like 1 2 2
MIRT457692 ZNF587 zinc finger protein 587 2 2
MIRT457727 SMOX spermine oxidase 2 2
MIRT457788 VWA1 von Willebrand factor A domain containing 1 2 2
MIRT457875 THEM6 thioesterase superfamily member 6 2 4
MIRT457909 ZNF212 zinc finger protein 212 2 2
MIRT458395 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT458496 MARVELD2 MARVEL domain containing 2 2 2
MIRT458544 CYP2B6 cytochrome P450 family 2 subfamily B member 6 2 2
MIRT458577 TCOF1 treacle ribosome biogenesis factor 1 2 2
MIRT458732 CES2 carboxylesterase 2 2 2
MIRT458814 ZNF843 zinc finger protein 843 2 2
MIRT458931 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT459341 ZNF17 zinc finger protein 17 2 2
MIRT459365 MPLKIP M-phase specific PLK1 interacting protein 2 6
MIRT459572 NLGN2 neuroligin 2 2 2
MIRT460015 DTX3L deltex E3 ubiquitin ligase 3L 2 4
MIRT460144 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT460653 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT460798 VPS33A VPS33A, CORVET/HOPS core subunit 2 2
MIRT461058 KCNK6 potassium two pore domain channel subfamily K member 6 2 4
MIRT461458 SLC19A3 solute carrier family 19 member 3 2 2
MIRT461572 SCO1 SCO1, cytochrome c oxidase assembly protein 2 4
MIRT461927 TNFSF14 TNF superfamily member 14 2 2
MIRT461953 C3 complement C3 2 2
MIRT462278 KRR1 KRR1, small subunit processome component homolog 2 2
MIRT462744 EFNB1 ephrin B1 2 2
MIRT463136 ZNF451 zinc finger protein 451 2 4
MIRT463566 ZBTB39 zinc finger and BTB domain containing 39 2 6
MIRT463866 WNT7B Wnt family member 7B 2 2
MIRT464326 UST uronyl 2-sulfotransferase 2 2
MIRT464796 UBE2F ubiquitin conjugating enzyme E2 F (putative) 2 2
MIRT465034 TTC39C tetratricopeptide repeat domain 39C 2 2
MIRT466207 TMED10 transmembrane p24 trafficking protein 10 2 2
MIRT467007 SSBP2 single stranded DNA binding protein 2 2 2
MIRT467029 SRSF1 serine and arginine rich splicing factor 1 2 4
MIRT468001 SKI SKI proto-oncogene 2 2
MIRT468031 SIKE1 suppressor of IKBKE 1 2 6
MIRT468575 SERBP1 SERPINE1 mRNA binding protein 1 2 6
MIRT468834 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT468970 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT469450 REL REL proto-oncogene, NF-kB subunit 2 6
MIRT470888 PLXND1 plexin D1 2 2
MIRT470953 PKM pyruvate kinase, muscle 2 2
MIRT471828 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT472590 NACC1 nucleus accumbens associated 1 2 2
MIRT472805 MTMR12 myotubularin related protein 12 2 2
MIRT472818 MTMR10 myotubularin related protein 10 2 6
MIRT472914 MSN moesin 2 2
MIRT474558 KLHDC3 kelch domain containing 3 2 2
MIRT474716 KIF13A kinesin family member 13A 2 6
MIRT475279 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT475300 IFNLR1 interferon lambda receptor 1 2 2
MIRT475759 HDLBP high density lipoprotein binding protein 2 2
MIRT475786 HDGF heparin binding growth factor 2 2
MIRT475933 GXYLT2 glucoside xylosyltransferase 2 2 8
MIRT476212 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT476238 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 2 4
MIRT476799 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT477988 DNAL1 dynein axonemal light chain 1 2 2
MIRT478317 DDN dendrin 2 2
MIRT479257 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT479344 CEP97 centrosomal protein 97 2 2
MIRT479522 CDCA4 cell division cycle associated 4 2 2
MIRT479906 CCDC117 coiled-coil domain containing 117 2 6
MIRT481147 AVL9 AVL9 cell migration associated 2 6
MIRT481735 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT482089 ALG8 ALG8, alpha-1,3-glucosyltransferase 2 2
MIRT482389 AEN apoptosis enhancing nuclease 2 2
MIRT483093 TFPI tissue factor pathway inhibitor 2 2
MIRT484246 ANK1 ankyrin 1 2 2
MIRT484342 EPN1 epsin 1 2 4
MIRT489141 C5orf38 chromosome 5 open reading frame 38 2 2
MIRT489163 MRPL12 mitochondrial ribosomal protein L12 2 4
MIRT489547 SOX11 SRY-box 11 2 4
MIRT489780 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT489799 KRT80 keratin 80 2 6
MIRT490535 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT492198 SOCS1 suppressor of cytokine signaling 1 2 2
MIRT492283 SHISA6 shisa family member 6 2 4
MIRT501059 SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 2 4
MIRT501094 SLC5A6 solute carrier family 5 member 6 2 4
MIRT503870 CBS cystathionine-beta-synthase 2 2
MIRT507981 BCL2L13 BCL2 like 13 2 4
MIRT508125 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT508205 SLC35E1 solute carrier family 35 member E1 2 2
MIRT508385 SPTBN2 spectrin beta, non-erythrocytic 2 2 4
MIRT510308 PDRG1 p53 and DNA damage regulated 1 2 2
MIRT510462 ZDHHC18 zinc finger DHHC-type containing 18 2 2
MIRT512227 ATXN3 ataxin 3 2 8
MIRT512665 STEAP3 STEAP3 metalloreductase 2 2
MIRT514184 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT515053 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515138 ZNF799 zinc finger protein 799 2 4
MIRT515452 ZNF747 zinc finger protein 747 2 2
MIRT515791 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT515905 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT516129 MRPS16 mitochondrial ribosomal protein S16 2 6
MIRT516679 ZNF860 zinc finger protein 860 2 4
MIRT516750 ZNF100 zinc finger protein 100 2 2
MIRT516971 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT517491 NPAP1 nuclear pore associated protein 1 2 2
MIRT517774 PROM2 prominin 2 2 2
MIRT517938 ZNF431 zinc finger protein 431 2 4
MIRT518386 ZNF250 zinc finger protein 250 2 2
MIRT520621 TMEM41B transmembrane protein 41B 2 2
MIRT521028 SLC30A5 solute carrier family 30 member 5 2 2
MIRT521454 RAD51 RAD51 recombinase 2 2
MIRT521564 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT521581 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT522263 NKRF NFKB repressing factor 2 2
MIRT522410 MXI1 MAX interactor 1, dimerization protein 2 2
MIRT522543 MED28 mediator complex subunit 28 2 6
MIRT522915 KCNE3 potassium voltage-gated channel subfamily E regulatory subunit 3 2 2
MIRT523029 IGF1 insulin like growth factor 1 2 2
MIRT523854 ESPL1 extra spindle pole bodies like 1, separase 2 4
MIRT524184 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524520 CDK19 cyclin dependent kinase 19 2 2
MIRT524674 C12orf5 TP53 induced glycolysis regulatory phosphatase 2 2
MIRT530257 ZNF620 zinc finger protein 620 2 2
MIRT540691 BMP3 bone morphogenetic protein 3 2 2
MIRT540976 C17orf85 nuclear cap binding subunit 3 2 2
MIRT545505 NAP1L1 nucleosome assembly protein 1 like 1 2 2
MIRT545631 GGCX gamma-glutamyl carboxylase 2 2
MIRT547358 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT550701 MPL MPL proto-oncogene, thrombopoietin receptor 2 4
MIRT550717 PMPCA peptidase, mitochondrial processing alpha subunit 2 4
MIRT551203 NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 2 2
MIRT553999 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 4
MIRT561081 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT563523 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT564463 SLC35E2 solute carrier family 35 member E2 2 2
MIRT565233 TRAF6 TNF receptor associated factor 6 2 2
MIRT566618 NKAP NFKB activating protein 2 2
MIRT569527 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 2
MIRT569639 QPCT glutaminyl-peptide cyclotransferase 2 2
MIRT570253 SSPN sarcospan 2 2
MIRT570570 OTUD7B OTU deubiquitinase 7B 2 2
MIRT570621 MTF2 metal response element binding transcription factor 2 2 2
MIRT571098 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 2
MIRT575196 Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT575554 Cd99 CD99 antigen 2 2
MIRT575634 Gnl3l guanine nucleotide binding protein-like 3 (nucleolar)-like 2 2
MIRT608267 NOP14 NOP14 nucleolar protein 2 2
MIRT609314 FXYD6 FXYD domain containing ion transport regulator 6 2 2
MIRT627670 RPL28 ribosomal protein L28 2 2
MIRT631185 TSPAN14 tetraspanin 14 2 2
MIRT631964 YIPF5 Yip1 domain family member 5 2 2
MIRT632885 GINM1 glycoprotein integral membrane 1 2 2
MIRT642618 CDKN3 cyclin dependent kinase inhibitor 3 2 2
MIRT645609 TSPAN6 tetraspanin 6 2 2
MIRT662227 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662329 MYLK3 myosin light chain kinase 3 2 2
MIRT662725 LRRC3C leucine rich repeat containing 3C 2 2
MIRT665520 USP14 ubiquitin specific peptidase 14 2 2
MIRT666634 RBMS2 RNA binding motif single stranded interacting protein 2 2 2
MIRT668969 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT670925 DESI1 desumoylating isopeptidase 1 2 2
MIRT673939 ZNF500 zinc finger protein 500 2 2
MIRT674675 PLCE1 phospholipase C epsilon 1 2 2
MIRT675230 MAK male germ cell associated kinase 2 2
MIRT680864 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT681047 ZDBF2 zinc finger DBF-type containing 2 2 2
MIRT681105 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT683553 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT684508 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684812 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT685981 CCDC77 coiled-coil domain containing 77 2 2
MIRT686709 TBC1D19 TBC1 domain family member 19 2 2
MIRT686867 SLC25A32 solute carrier family 25 member 32 2 2
MIRT688908 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT691208 KLHL30 kelch like family member 30 2 2
MIRT692298 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT694380 MTA1 metastasis associated 1 2 2
MIRT696497 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT700686 POLR3D RNA polymerase III subunit D 2 2
MIRT701088 PAPOLG poly(A) polymerase gamma 2 2
MIRT703373 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT706189 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT706648 SMIM19 small integral membrane protein 19 2 2
MIRT709466 KRTAP19-1 keratin associated protein 19-1 2 2
MIRT709699 DMWD DM1 locus, WD repeat containing 2 2
MIRT710693 LYRM4 LYR motif containing 4 2 2
MIRT713457 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT722409 RARS2 arginyl-tRNA synthetase 2, mitochondrial 2 2
MIRT725391 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT725548 DNMT3A DNA methyltransferase 3 alpha 2 2

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