pre-miRNA Information
pre-miRNA hsa-mir-7161   
Genomic Coordinates chr6: 158609707 - 158609790
Description Homo sapiens miR-7161 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-7161-5p
Sequence 1| UAAAGACUGUAGAGGCAACUGGU |23
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1198027002 1 dbSNP
rs530077902 10 dbSNP
rs1446817450 13 dbSNP
rs774892048 14 dbSNP
rs1438482648 16 dbSNP
rs1167166990 19 dbSNP
rs760372681 19 dbSNP
Putative Targets

Gene Information
Gene Symbol YRDC   
Synonyms DRIP3, IRIP, SUA5
Description yrdC N6-threonylcarbamoyltransferase domain containing
Transcript NM_024640   
Expression
Putative miRNA Targets on YRDC
3'UTR of YRDC
(miRNA target sites are highlighted)
>YRDC|NM_024640|3'UTR
   1 AACTCTGGGAAGCAGGAAGGCCCAAGACCTGGTGCTGGATACTATGTGTCTGTCCACTGACGACTGTCAAGGCCTCATTT
  81 GCAGAGGCCACCGGAGCTAGGGCACTAGCCTGACTTTTAAGGCAGTGTGTCTTTCTGAGCACTGTAGACCAAGCCCTTGG
 161 AGCTGCTGGTTTAGCCTTGCACCTGGGGAAAGGATGTATTTATTTGTATTTTCATATATCAGCCAAAAGCTGAATGGAAA
 241 AGTTAAGAACATTCCTAGGTGGCCTTATTCTAATAAGTTTCTTCTGTCTGTTTTGTTTTTCAATTGAAAAGTAATTAAAT
 321 AACAGATTTAGAATCTAGTGAGAGCCTCCTCTCTGGTGGGTGGTGGCATTTAAGGTTCAAACCAGCCAGAAGTGCTGGTG
 401 CTGTTTAAAAAGTCTCAGGTGGCTGCGTGTGGTGGCTCATGCCTGTAATCCCAACATTCTGGGAGGCCCAGGCGGGAGAA
 481 CTGCTTGAGCCCAGGAGTTCAGAATCAGCCTGGGCAACATAGCAATACTCCGTCTCATAAAAATTAATAAATAAAAAGTC
 561 TCAGGTGACCAAAGGCTCCTGAAGCTAGAACCAGGTTTGGATAAAGATTGAAGAGCCACAGGCCACTCTTCCCTCTGAGC
 641 CATTGGGCCTAGTGGTGTCATGTATTGTAATTGCTCGCAGGGAGAGCAGTCTTTTTGGTGTAATAGTGGGATGTCTGCTT
 721 AGTTGGCAGGGGTTCAGTCCAAATGGAAGAATATTGGGAAATAAACCTCCACTATCCTTTATAGCCAGGGACTTTTTTCT
 801 TATTTATTCATAAAATAAATTATAGTTAATTATACCCATAACACCTTTATTTAAATCCAGTGTTCTCCGCAGCCTTTTGT
 881 CTATTTATATGTGTACCAAGTGTTAAACATAATTATTATTGGGCATTTGAACTTTGTTTTTCTTTAAAGAAATGCTGCTA
 961 TTAAACATATTTGTAAATGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugGUCAACG-GAG------AUGUCAGAAAu 5'
            :| |||| | |       :|||||||| 
Target 5' tgTAATTGCTCGCAGGGAGAGCAGTCTTTt 3'
666 - 695 147.00 -11.70
2
miRNA  3' ugGUCAACGGAGAUGUCAGAAAu 5'
            ||||  :||| :||| |||| 
Target 5' tcCAGTGTTCTCCGCAGCCTTTt 3'
856 - 878 141.00 -18.70
3
miRNA  3' uggucaacggagauguCAGAAAu 5'
                          |||||| 
Target 5' acttttaaggcagtgtGTCTTTc 3'
113 - 135 120.00 -9.06
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30450073 15 COSMIC
COSN31587435 20 COSMIC
COSN30179598 38 COSMIC
COSN31492786 39 COSMIC
COSN19003373 61 COSMIC
COSN6035151 122 COSMIC
COSN15720035 138 COSMIC
COSN31522777 147 COSMIC
COSN31595149 186 COSMIC
COSN31959412 679 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1474327672 6 dbSNP
rs745626718 9 dbSNP
rs757033765 20 dbSNP
rs753760956 29 dbSNP
rs116663798 32 dbSNP
rs755668390 38 dbSNP
rs752319475 41 dbSNP
rs767044057 45 dbSNP
rs912033196 56 dbSNP
rs987524394 61 dbSNP
rs932029497 62 dbSNP
rs1452491664 76 dbSNP
rs921978285 92 dbSNP
rs1342600914 93 dbSNP
rs1225777171 102 dbSNP
rs1327602565 113 dbSNP
rs1269212139 116 dbSNP
rs979164835 118 dbSNP
rs752985444 120 dbSNP
rs543992314 127 dbSNP
rs1260660027 131 dbSNP
rs187139243 138 dbSNP
rs955625138 139 dbSNP
rs1220357565 140 dbSNP
rs1366966292 142 dbSNP
rs1273173319 148 dbSNP
rs1445055618 156 dbSNP
rs1192132716 169 dbSNP
rs1433101866 179 dbSNP
rs1389658069 180 dbSNP
rs1022617149 183 dbSNP
rs1427269850 184 dbSNP
rs988049650 185 dbSNP
rs1177776867 188 dbSNP
rs975238156 190 dbSNP
rs1381034763 212 dbSNP
rs956536187 213 dbSNP
rs1034816210 216 dbSNP
rs541641405 217 dbSNP
rs1022142099 221 dbSNP
rs1456496310 230 dbSNP
rs1281022370 234 dbSNP
rs1003294692 237 dbSNP
rs969123074 242 dbSNP
rs766213294 255 dbSNP
rs1223658805 256 dbSNP
rs1023332530 273 dbSNP
rs1178103379 281 dbSNP
rs1433725898 290 dbSNP
rs570641323 292 dbSNP
rs1196070959 294 dbSNP
rs1267114931 297 dbSNP
rs1199596033 299 dbSNP
rs1480141309 299 dbSNP
rs1379447902 303 dbSNP
rs1188958074 304 dbSNP
rs994897894 315 dbSNP
rs529826597 319 dbSNP
rs956661899 322 dbSNP
rs1421978976 323 dbSNP
rs1031058967 325 dbSNP
rs1300890004 325 dbSNP
rs1405185383 331 dbSNP
rs559251123 339 dbSNP
rs1302716036 343 dbSNP
rs182505472 344 dbSNP
rs577209437 347 dbSNP
rs1261287893 352 dbSNP
rs1355574215 353 dbSNP
rs1220047971 359 dbSNP
rs1290773577 398 dbSNP
rs899438037 403 dbSNP
rs745489469 406 dbSNP
rs1005057484 414 dbSNP
rs1417456634 416 dbSNP
rs190483363 425 dbSNP
rs890627651 426 dbSNP
rs1051877697 427 dbSNP
rs1442100798 429 dbSNP
rs932104720 431 dbSNP
rs1365381107 436 dbSNP
rs1023375528 445 dbSNP
rs1013036432 455 dbSNP
rs894608146 456 dbSNP
rs1038542575 459 dbSNP
rs1307598086 461 dbSNP
rs1378942155 471 dbSNP
rs941585311 472 dbSNP
rs887391056 473 dbSNP
rs543770485 474 dbSNP
rs1043088330 475 dbSNP
rs1222555444 479 dbSNP
rs947395098 484 dbSNP
rs913200636 489 dbSNP
rs1479691266 490 dbSNP
rs988468534 493 dbSNP
rs576474350 522 dbSNP
rs927820060 525 dbSNP
rs1459453861 530 dbSNP
rs758302036 531 dbSNP
rs1384981976 532 dbSNP
rs969154193 537 dbSNP
rs1433218159 539 dbSNP
rs776394949 546 dbSNP
rs770513640 547 dbSNP
rs1166473445 550 dbSNP
rs1362709203 550 dbSNP
rs1023786803 551 dbSNP
rs1371039276 554 dbSNP
rs1466426779 555 dbSNP
rs1461182059 556 dbSNP
rs774646946 556 dbSNP
rs558163376 557 dbSNP
rs1173942699 559 dbSNP
rs1431104382 562 dbSNP
rs975457672 562 dbSNP
rs1336059176 563 dbSNP
rs942771901 566 dbSNP
rs1167550458 569 dbSNP
rs1447304501 572 dbSNP
rs555085335 579 dbSNP
rs1182806562 584 dbSNP
rs1483174503 600 dbSNP
rs963382994 616 dbSNP
rs1208004357 619 dbSNP
rs765050575 627 dbSNP
rs1258736943 629 dbSNP
rs1320153041 631 dbSNP
rs1202293893 638 dbSNP
rs1243135705 641 dbSNP
rs75464904 642 dbSNP
rs530024611 643 dbSNP
rs1260094566 659 dbSNP
rs1226409493 660 dbSNP
rs572671331 661 dbSNP
rs890702140 663 dbSNP
rs989345311 667 dbSNP
rs956813819 668 dbSNP
rs1175614245 669 dbSNP
rs1359612910 674 dbSNP
rs1314540515 676 dbSNP
rs1396382336 677 dbSNP
rs1030943957 678 dbSNP
rs7686 679 dbSNP
rs1279122041 684 dbSNP
rs1320084961 685 dbSNP
rs1484731347 686 dbSNP
rs184228046 697 dbSNP
rs1313235170 698 dbSNP
rs1212902883 710 dbSNP
rs1411642799 711 dbSNP
rs181554343 718 dbSNP
rs1167447571 722 dbSNP
rs1479259550 725 dbSNP
rs900647268 730 dbSNP
rs1011917004 732 dbSNP
rs1416049528 736 dbSNP
rs1043545790 742 dbSNP
rs947458297 743 dbSNP
rs1420145933 754 dbSNP
rs12395 761 dbSNP
rs148951967 768 dbSNP
rs1342550508 771 dbSNP
rs1412130483 771 dbSNP
rs1053104251 775 dbSNP
rs935268935 776 dbSNP
rs1368428346 780 dbSNP
rs1184941443 789 dbSNP
rs375505058 790 dbSNP
rs1005748565 791 dbSNP
rs1316693889 792 dbSNP
rs1217880947 797 dbSNP
rs1047801 799 dbSNP
rs14614 800 dbSNP
rs981965300 801 dbSNP
rs1047804 802 dbSNP
rs778978467 802 dbSNP
rs1221308955 803 dbSNP
rs1203130679 806 dbSNP
rs969645725 807 dbSNP
rs1489540504 809 dbSNP
rs1175405296 819 dbSNP
rs540166672 823 dbSNP
rs916382666 833 dbSNP
rs1320870420 838 dbSNP
rs147311863 838 dbSNP
rs973564649 844 dbSNP
rs963158181 850 dbSNP
rs1230106332 865 dbSNP
rs1328289768 867 dbSNP
rs141678587 868 dbSNP
rs1350511868 869 dbSNP
rs942737484 872 dbSNP
rs1278281712 883 dbSNP
rs1306808326 889 dbSNP
rs983067968 889 dbSNP
rs796491658 892 dbSNP
rs954984167 897 dbSNP
rs1392338521 900 dbSNP
rs989704999 909 dbSNP
rs1227350467 913 dbSNP
rs1293720326 914 dbSNP
rs1271402911 917 dbSNP
rs1452816743 917 dbSNP
rs935211102 920 dbSNP
rs1231821738 921 dbSNP
rs1457136608 936 dbSNP
rs1458130199 936 dbSNP
rs529885137 937 dbSNP
rs1161832137 940 dbSNP
rs1473171954 941 dbSNP
rs10015 942 dbSNP
rs377551518 960 dbSNP
rs559113176 960 dbSNP
rs71671712 960 dbSNP
rs1407308303 963 dbSNP
rs916218412 973 dbSNP
rs1399673102 979 dbSNP
rs900673780 981 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uggucaacggagauGUCAGAAAu 5'
                        |||||||| 
Target 5' --------------CAGUCUUUu 3'
1 - 9
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000373044.2 | 3UTR | CAGUCUUUUUGGUGUAAUAGUGGGAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
94 hsa-miR-7161-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT131193 INCENP inner centromere protein 2 4
MIRT318016 CENPQ centromere protein Q 2 2
MIRT405275 ZNF678 zinc finger protein 678 2 2
MIRT442570 CCDC59 coiled-coil domain containing 59 2 2
MIRT442611 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT444013 GOLGA8H golgin A8 family member H 2 2
MIRT444024 GOLGA8M golgin A8 family member M 2 2
MIRT444339 GOLGA6L4 golgin A6 family-like 4 2 2
MIRT444611 GOLGA6L10 golgin A6 family-like 10 2 2
MIRT446342 MAN1A2 mannosidase alpha class 1A member 2 2 2
MIRT446558 GOLGA8J golgin A8 family member J 2 2
MIRT447671 PACSIN2 protein kinase C and casein kinase substrate in neurons 2 2 2
MIRT447975 MSH6 mutS homolog 6 2 2
MIRT448895 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT448936 CHD7 chromodomain helicase DNA binding protein 7 2 2
MIRT449414 TRIM5 tripartite motif containing 5 2 2
MIRT450291 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT454877 PCNA proliferating cell nuclear antigen 2 4
MIRT456615 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT462108 TMEM214 transmembrane protein 214 2 2
MIRT471923 NRAS NRAS proto-oncogene, GTPase 2 4
MIRT474437 KLHL21 kelch like family member 21 2 2
MIRT476600 G3BP1 G3BP stress granule assembly factor 1 2 2
MIRT480573 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT483890 IL20RB interleukin 20 receptor subunit beta 2 6
MIRT493363 KIF5B kinesin family member 5B 2 2
MIRT494934 TMEM167A transmembrane protein 167A 2 2
MIRT495915 CLDN1 claudin 1 2 2
MIRT501574 PLEKHF2 pleckstrin homology and FYVE domain containing 2 2 4
MIRT502193 IGF1R insulin like growth factor 1 receptor 2 4
MIRT502928 CDC42SE1 CDC42 small effector 1 2 4
MIRT506393 NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 2 4
MIRT506570 MNX1 motor neuron and pancreas homeobox 1 2 4
MIRT509478 GNL3L G protein nucleolar 3 like 2 6
MIRT518537 FLCN folliculin 2 6
MIRT519577 ZNFX1 zinc finger NFX1-type containing 1 2 4
MIRT524088 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 4
MIRT524146 LDHD lactate dehydrogenase D 2 4
MIRT524659 C1orf50 chromosome 1 open reading frame 50 2 10
MIRT526324 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526566 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT526612 ZNF780A zinc finger protein 780A 2 4
MIRT526889 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT527115 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT528023 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT529589 TMEM220 transmembrane protein 220 2 2
MIRT532797 STYK1 serine/threonine/tyrosine kinase 1 2 2
MIRT537099 GPC6 glypican 6 2 2
MIRT539070 ATP6V1C1 ATPase H+ transporting V1 subunit C1 2 2
MIRT545495 DAPK2 death associated protein kinase 2 2 2
MIRT545814 ZNF608 zinc finger protein 608 2 4
MIRT553533 TMEM185B transmembrane protein 185B 2 4
MIRT557285 HIST2H2BE histone cluster 2 H2B family member e 2 2
MIRT559552 ARGLU1 arginine and glutamate rich 1 2 4
MIRT561069 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT561710 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT561995 LRRC58 leucine rich repeat containing 58 2 2
MIRT565896 NHS NHS actin remodeling regulator 2 2
MIRT567333 HMGB1 high mobility group box 1 2 2
MIRT568042 CLDN12 claudin 12 2 2
MIRT568315 BAG4 BCL2 associated athanogene 4 2 2
MIRT570677 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 2
MIRT571047 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT571359 SFT2D2 SFT2 domain containing 2 2 2
MIRT571935 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT572786 ZNF277 zinc finger protein 277 2 2
MIRT573936 CNTNAP2 contactin associated protein like 2 2 2
MIRT576962 Anxa4 annexin A4 2 3
MIRT608297 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT613342 AFF1 AF4/FMR2 family member 1 2 2
MIRT613529 ANAPC7 anaphase promoting complex subunit 7 2 2
MIRT614705 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT616658 ORAI1 ORAI calcium release-activated calcium modulator 1 2 2
MIRT624731 ANXA4 annexin A4 2 3
MIRT626525 TSC1 TSC complex subunit 1 2 2
MIRT627647 SCN1A sodium voltage-gated channel alpha subunit 1 2 2
MIRT637423 EPB41L3 erythrocyte membrane protein band 4.1 like 3 2 2
MIRT641059 TCP11L1 t-complex 11 like 1 2 4
MIRT645591 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT646455 ZNF705A zinc finger protein 705A 2 2
MIRT656454 MAPK6 mitogen-activated protein kinase 6 2 2
MIRT676551 TMPPE transmembrane protein with metallophosphoesterase domain 2 4
MIRT682720 KIAA1456 KIAA1456 2 2
MIRT698307 TMEM2 transmembrane protein 2 2 2
MIRT701906 MMGT1 membrane magnesium transporter 1 2 2
MIRT702228 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT708642 UBE2W ubiquitin conjugating enzyme E2 W 2 2
MIRT709326 HMBOX1 homeobox containing 1 2 2
MIRT711400 RANBP2 RAN binding protein 2 2 2
MIRT712130 TGFBR2 transforming growth factor beta receptor 2 2 2
MIRT714226 ARMC10 armadillo repeat containing 10 2 2
MIRT716914 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT723060 FGD6 FYVE, RhoGEF and PH domain containing 6 2 2
MIRT723846 MN1 MN1 proto-oncogene, transcriptional regulator 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-7161-5p Paclitaxel 36314 NSC125973 approved resistant High Ovarian Cancer cell line (HEYA8)

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