miRTarBase - #MIRT571098


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pre-miRNA Information
pre-miRNA hsa-mir-3689d-1   
Genomic Coordinates chr9: 134849609 - 134849682
Description Homo sapiens miR-3689d-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3689d-2   
Genomic Coordinates chr9: 134850277 - 134850356
Description Homo sapiens miR-3689d-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3689d
Sequence 2| GGGAGGUGUGAUCUCACACUCG |23
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs551722268 8 dbSNP
rs143142996 8 dbSNP
rs1236297052 12 dbSNP
rs573148947 14 dbSNP
rs1210004979 14 dbSNP
rs1217460444 14 dbSNP
rs762590109 18 dbSNP
rs574332265 18 dbSNP
rs1164353021 21 dbSNP
rs963741171 21 dbSNP
rs1177416877 22 dbSNP
rs765777344 22 dbSNP
Putative Targets

Gene Information
Gene Symbol ISLR2   
Synonyms LINX
Description immunoglobulin superfamily containing leucine rich repeat 2
Transcript NM_001130136   
Other Transcripts NM_001130137 , NM_001130138 , NM_020851   
Expression
Putative miRNA Targets on ISLR2
3'UTR of ISLR2
(miRNA target sites are highlighted)		 
>ISLR2|NM_001130136|3'UTR
   1 ACCTCCGCCCGTCCGGCCCGCCCATTCCCGACCTCCACCTAGGGTGCCTGGGAGCAGCAGTCTAGGGCTGGCAGGACTTA
  81 TGTCCCCCGTCCCCAACCTTCACCTACTCCTCCCCCTTACTACTCCCCAACCTTGACTACCAGGGACTTCTATTAGGGAG
 161 TGGGCCGATTTCACCAGTCCCTGCTACCCACGGCTGCCATTCTCCCTGCGGGCTGAATCCCCTTCCCCGCCAAGCACAGT
 241 GTTTATCTTACCCCATGCAAGACTCCACCCGCAGACGGTGGGCGATATCTATGTCCCTCCATTCCCGTCGCGATTATCTG
 321 CGAAATCCACCCCGCAGCCCGCCCCACCGTGGGCTCTGGAGCCAGAGGAAACGAGCGAAGACTTTGGAAACCTCGCGGTA
 401 ACGCGGTGGTTTCGGGGGCCAGCCAAGGCCAGTGGAGTGCTGTGGGGTCCCACCTCGACCCCTCCTCCTCCCTTTCTTTC
 481 TTTCCTTTTTTTTTATTTTTTAATTTTATTTATTTATTTATTTATTTTTTGACGGAGTCTTGGTCTGTCGCCAGGCTGGA
 561 GTGCAGTGGCGCGATCTCGGCTCACTGCATCTTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTGCCTAGTAG
 641 CTGGGACTACAGGCGCGCGCCACCACGACCAGCTAATTTCTTCTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCA
 721 GGATGGTCTGGATCTCTTGACCTCAGGTGATCCATCTGCCTCGGCCTCTCAAAGTGCTGGGATTACAGGCGTGAGGCACC
 801 GCGCCCGGCCCCTCCTCCCTTTCAATCCCTACTCCCAGAAGCCGGGATTCGTGGCAACCCCTAGTTTTTAGTTCCAAAGC
 881 CTCCTGCCGGCAGGGAACCAAATCCTTCTGTCCTCCCACCCCCACCCCACTTCTGGCCAGTTGGAGTCCAGCCCGGTGCC
 961 TGGGGCGCCTTTCAGCTCCGCGCTCAGATTTTCCTGTTTTCGTTGTTTTCAAAGACAGCGACATTTCGGGTCTGGTGCTA
1041 ACACCCCCTTCCCAGCCTCTGGGAAAATCGAGTGTGTGTGTCGGGGGGTAGGGAGGGAATGCGTTTTCTGTCGTCTCTCT
1121 CCTAACTTAAAGCGCCGCAGGACCGCGCGCCCCTTGGCGGCTGAGCCTGTGGACTTGGTCGCGGGCCAATTTCGTTGTCC
1201 GTGTGTTGGGCTTTCCGGAGGTCTGTGCGCCCAACAGCGCCGCTCCCGCGGCTCCACCCGACCCAGACCCTAGCTGGAAA
1281 GCGCCGGAGGCGGAGGAAGCTGACTGTGGCCTCCCGGGCCGCGGCTCTCTGGAGGGCTCGCGCCCTAGTTCGCACAAAGC
1361 CTGCTCGTGACTGTGCGACTGTGCGACGGGATCCGGATGGAGCCGAGCCCCTCCGTCCTCGCGTCTCGGTCCTCGCGTCG
1441 CCCCGCCCCACCCGCCCCTGCTTCGGCGGGAATCGTGTTTGCCCGGCGTGTAGTCCCTGACAAGCGTGCCCTGTAGGAGA
1521 AAAGTCTGTGTCCTGTGAAGTGTGACCGTGTAGTGTAGGGGGGCGGGCGGGGGGGCGGATGGGCGGGGAGGGAGGGAAGG
1601 GGAGGGGCGCGGCGCGGCGACTCGGGGCGGGGTTCTTTTTTCCATTTTGAAAGAAAGCGTCGGGGTTGGGGTGGGGGGAG
1681 TTTCAGTCCTCGGGATCAGCCCTCTCCGCGAAGCGCAGCACAAGCGCGGGCCTGGGACGGAGTAGCCCCCCGGAGCCCGT
1761 GCCCTTTTCTAAACGCGTCTGTATGCAGTCAATAAAACAATCGATTTGAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gcucACACUCUAGUGUGGAGgg 5'
              ||||:|:|| ||||||  
Target 5' gtgcTGTGGGGTCCCACCTCga 3'
 437 - 458 154.00 -21.70
2 
miRNA  3' gcucacAC-UCUAGUGUGGAGGg 5'
                || |  |: |:||||| 
Target 5' gctcacTGCATCTTCCGCCTCCc 3'
 580 - 602 128.00 -15.30
3 
miRNA  3' gcUCACACU-CUAGUGUGGAGGg 5'
            :|| ||: | | ||||| || 
Target 5' cgGGTCTGGTGCTAACACCCCCt 3'
 1027 - 1049 128.00 -19.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN20078316 9 COSMIC
COSN30497423 15 COSMIC
COSN18738881 21 COSMIC
COSN30456264 30 COSMIC
COSN28797822 35 COSMIC
COSN30521210 50 COSMIC
COSN30461149 76 COSMIC
COSN8590341 113 COSMIC
COSN26958012 153 COSMIC
COSN15624598 226 COSMIC
COSN30133621 278 COSMIC
COSN15624599 305 COSMIC
COSN30119722 362 COSMIC
COSN30540256 404 COSMIC
COSN30134037 405 COSMIC
COSN6279864 439 COSMIC
COSN15624600 462 COSMIC
COSN15624601 486 COSMIC
COSN30531909 510 COSMIC
COSN5865390 550 COSMIC
COSN27837709 551 COSMIC
COSN16879787 660 COSMIC
COSN30117822 804 COSMIC
COSN30127147 836 COSMIC
COSN31608184 867 COSMIC
COSN30112118 1002 COSMIC
COSN30121312 1039 COSMIC
COSN29561559 1048 COSMIC
COSN30140315 1092 COSMIC
COSN15624602 1097 COSMIC
COSN30132050 1111 COSMIC
COSN30120371 1151 COSMIC
COSN15662666 1183 COSMIC
COSN27269400 1207 COSMIC
COSN30138018 1248 COSMIC
COSN30132281 1376 COSMIC
COSN30119650 1377 COSMIC
COSN30112392 1378 COSMIC
COSN24849239 1416 COSMIC
COSN30116684 1422 COSMIC
COSN30143696 1426 COSMIC
COSN30133802 1709 COSMIC
COSN30128066 1752 COSMIC
COSN30133718 1752 COSMIC
COSN30541925 1757 COSMIC
COSN24620883 1792 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs770260917 8 dbSNP
rs1027017171 11 dbSNP
rs776180277 12 dbSNP
rs749773881 14 dbSNP
rs771730616 15 dbSNP
rs772540270 20 dbSNP
rs1463858251 21 dbSNP
rs760380510 22 dbSNP
rs766016409 23 dbSNP
rs1360722937 24 dbSNP
rs776336631 25 dbSNP
rs759380125 28 dbSNP
rs1355415557 33 dbSNP
rs910707426 34 dbSNP
rs1401070738 35 dbSNP
rs200510276 37 dbSNP
rs752649766 41 dbSNP
rs1316504858 43 dbSNP
rs758271111 45 dbSNP
rs1192072252 64 dbSNP
rs1422523025 74 dbSNP
rs1468548113 82 dbSNP
rs551936805 85 dbSNP
rs1169532143 88 dbSNP
rs943475323 89 dbSNP
rs976099243 97 dbSNP
rs1475767197 104 dbSNP
rs1172267117 111 dbSNP
rs1489063708 112 dbSNP
rs1246650081 114 dbSNP
rs1220633994 116 dbSNP
rs1484278964 124 dbSNP
rs114366458 133 dbSNP
rs1205478327 143 dbSNP
rs945403060 147 dbSNP
rs936289761 157 dbSNP
rs1212450348 162 dbSNP
rs1416026985 168 dbSNP
rs1042387000 172 dbSNP
rs1282642411 177 dbSNP
rs1402861996 181 dbSNP
rs924544820 182 dbSNP
rs1251095104 184 dbSNP
rs1039908042 188 dbSNP
rs921276463 191 dbSNP
rs1313268173 192 dbSNP
rs933957980 199 dbSNP
rs1051126326 200 dbSNP
rs1178251296 205 dbSNP
rs935918861 207 dbSNP
rs887228394 212 dbSNP
rs747745399 224 dbSNP
rs894291862 230 dbSNP
rs1197960286 235 dbSNP
rs1473758968 238 dbSNP
rs1038231603 239 dbSNP
rs1204923284 246 dbSNP
rs1249263412 248 dbSNP
rs1326543664 251 dbSNP
rs1312321238 253 dbSNP
rs1262404213 256 dbSNP
rs1221658914 262 dbSNP
rs1012677324 272 dbSNP
rs1390622734 274 dbSNP
rs1272773499 275 dbSNP
rs544879379 277 dbSNP
rs1304881903 278 dbSNP
rs1466605879 286 dbSNP
rs1405503742 288 dbSNP
rs1045476777 290 dbSNP
rs906943704 294 dbSNP
rs563166736 296 dbSNP
rs1002141237 297 dbSNP
rs533413489 308 dbSNP
rs960363306 310 dbSNP
rs1183282879 312 dbSNP
rs545400269 313 dbSNP
rs1013297813 314 dbSNP
rs1241947964 317 dbSNP
rs952427646 328 dbSNP
rs1331064411 329 dbSNP
rs1020624150 330 dbSNP
rs74023417 338 dbSNP
rs779082317 342 dbSNP
rs979572903 343 dbSNP
rs887376783 344 dbSNP
rs1396784723 346 dbSNP
rs1382337922 349 dbSNP
rs964815160 350 dbSNP
rs1390009913 361 dbSNP
rs976213723 364 dbSNP
rs1455758108 366 dbSNP
rs926160332 382 dbSNP
rs1165971818 384 dbSNP
rs923387210 388 dbSNP
rs1423984883 395 dbSNP
rs572944522 405 dbSNP
rs966798695 407 dbSNP
rs1417597721 409 dbSNP
rs189600111 412 dbSNP
rs1248555709 415 dbSNP
rs1204537841 417 dbSNP
rs921475065 419 dbSNP
rs1266937548 422 dbSNP
rs1245260562 423 dbSNP
rs935937448 430 dbSNP
rs1313273746 432 dbSNP
rs934239501 433 dbSNP
rs1054335914 436 dbSNP
rs1366082301 444 dbSNP
rs1051076486 446 dbSNP
rs746399937 464 dbSNP
rs1393549212 468 dbSNP
rs1294431294 472 dbSNP
rs1385796013 472 dbSNP
rs772409994 472 dbSNP
rs1161345199 478 dbSNP
rs915758256 486 dbSNP
rs948571486 486 dbSNP
rs940139508 490 dbSNP
rs1191874459 496 dbSNP
rs1038833973 501 dbSNP
rs906970858 502 dbSNP
rs898336979 503 dbSNP
rs1047863882 505 dbSNP
rs1490140911 505 dbSNP
rs370363634 505 dbSNP
rs1343173200 508 dbSNP
rs180853442 514 dbSNP
rs529194276 521 dbSNP
rs1006435071 525 dbSNP
rs185894474 529 dbSNP
rs1353505313 531 dbSNP
rs964928388 550 dbSNP
rs1238419268 552 dbSNP
rs751150742 553 dbSNP
rs776108791 559 dbSNP
rs1013495244 560 dbSNP
rs1352038734 563 dbSNP
rs568806680 564 dbSNP
rs767003172 569 dbSNP
rs752220045 579 dbSNP
rs1379282454 581 dbSNP
rs967208205 586 dbSNP
rs1194545501 587 dbSNP
rs1479968617 588 dbSNP
rs1266454329 592 dbSNP
rs539082589 594 dbSNP
rs1237777375 595 dbSNP
rs978176251 602 dbSNP
rs966753819 608 dbSNP
rs1000633208 614 dbSNP
rs1194150909 615 dbSNP
rs1272571172 615 dbSNP
rs957993756 619 dbSNP
rs990814235 620 dbSNP
rs1437655317 622 dbSNP
rs1344204830 629 dbSNP
rs1290534035 635 dbSNP
rs1410831945 639 dbSNP
rs1335975110 642 dbSNP
rs1327834923 648 dbSNP
rs1183713206 669 dbSNP
rs1403766537 669 dbSNP
rs915871100 672 dbSNP
rs1469181403 673 dbSNP
rs1427135195 675 dbSNP
rs1364088569 681 dbSNP
rs1457355348 684 dbSNP
rs1032471312 685 dbSNP
rs957562257 686 dbSNP
rs975589080 692 dbSNP
rs768842053 698 dbSNP
rs138692523 700 dbSNP
rs777056942 701 dbSNP
rs1243780840 721 dbSNP
rs1461489988 743 dbSNP
rs1203139900 763 dbSNP
rs986991132 770 dbSNP
rs908555234 772 dbSNP
rs939983719 780 dbSNP
rs974189207 781 dbSNP
rs929049778 794 dbSNP
rs920044631 799 dbSNP
rs1278556358 800 dbSNP
rs149315385 801 dbSNP
rs1448447381 803 dbSNP
rs1341912183 805 dbSNP
rs1309624272 807 dbSNP
rs1336747174 811 dbSNP
rs560094405 815 dbSNP
rs896302276 818 dbSNP
rs941739227 819 dbSNP
rs769062626 820 dbSNP
rs1264170330 821 dbSNP
rs1156628262 824 dbSNP
rs540770005 826 dbSNP
rs1337105921 828 dbSNP
rs374534908 832 dbSNP
rs1386099544 837 dbSNP
rs1183058623 838 dbSNP
rs1214384972 842 dbSNP
rs765089789 846 dbSNP
rs1250422291 852 dbSNP
rs900790090 852 dbSNP
rs574193653 862 dbSNP
rs544817982 865 dbSNP
rs1282528281 884 dbSNP
rs1197712448 886 dbSNP
rs1230398987 889 dbSNP
rs1361074721 897 dbSNP
rs1315392345 900 dbSNP
rs1250998637 903 dbSNP
rs1244588519 906 dbSNP
rs1000898350 909 dbSNP
rs1030932187 915 dbSNP
rs1322427889 916 dbSNP
rs1422998159 919 dbSNP
rs556926357 924 dbSNP
rs1419929498 925 dbSNP
rs902642354 925 dbSNP
rs1406941659 926 dbSNP
rs772830330 928 dbSNP
rs1475289327 930 dbSNP
rs1169346567 932 dbSNP
rs1163230032 934 dbSNP
rs777802735 939 dbSNP
rs1000027460 945 dbSNP
rs1397428349 948 dbSNP
rs1032001599 949 dbSNP
rs1187206212 953 dbSNP
rs368780444 955 dbSNP
rs1298356441 956 dbSNP
rs995866287 957 dbSNP
rs1490633469 960 dbSNP
rs1292025459 967 dbSNP
rs1221338314 969 dbSNP
rs1356867876 973 dbSNP
rs958108413 981 dbSNP
rs1214660404 983 dbSNP
rs1361178117 984 dbSNP
rs1268403354 986 dbSNP
rs762982514 987 dbSNP
rs1438318989 989 dbSNP
rs1397707728 990 dbSNP
rs144623171 996 dbSNP
rs1302339998 1005 dbSNP
rs1422919443 1015 dbSNP
rs545433515 1018 dbSNP
rs969977188 1019 dbSNP
rs987022296 1031 dbSNP
rs928465218 1040 dbSNP
rs529160404 1048 dbSNP
rs961647981 1049 dbSNP
rs549025246 1061 dbSNP
rs908990161 1062 dbSNP
rs560258951 1064 dbSNP
rs1489687132 1072 dbSNP
rs747261530 1075 dbSNP
rs1229923405 1077 dbSNP
rs1038687012 1078 dbSNP
rs527788363 1080 dbSNP
rs1252090913 1083 dbSNP
rs919926374 1083 dbSNP
rs938099728 1084 dbSNP
rs542712211 1085 dbSNP
rs1299020690 1086 dbSNP
rs1051990112 1087 dbSNP
rs917768218 1088 dbSNP
rs949164783 1089 dbSNP
rs1470562658 1091 dbSNP
rs1429218918 1092 dbSNP
rs1042307988 1093 dbSNP
rs1473815337 1104 dbSNP
rs1252201881 1114 dbSNP
rs1177467055 1118 dbSNP
rs902466279 1134 dbSNP
rs1480124294 1145 dbSNP
rs1230623986 1149 dbSNP
rs902757313 1150 dbSNP
rs999740080 1151 dbSNP
rs1032906540 1157 dbSNP
rs372359809 1165 dbSNP
rs1429740406 1168 dbSNP
rs936591919 1173 dbSNP
rs1307944026 1183 dbSNP
rs1053889793 1194 dbSNP
rs893924260 1195 dbSNP
rs1376702800 1197 dbSNP
rs1465912673 1200 dbSNP
rs900155577 1201 dbSNP
rs1377588865 1202 dbSNP
rs1415958950 1206 dbSNP
rs868234809 1213 dbSNP
rs1298079215 1219 dbSNP
rs995897379 1220 dbSNP
rs1030004834 1222 dbSNP
rs891297982 1224 dbSNP
rs1216393461 1226 dbSNP
rs1296648058 1227 dbSNP
rs1311835625 1229 dbSNP
rs1364699055 1235 dbSNP
rs529098513 1243 dbSNP
rs562478804 1252 dbSNP
rs1282230378 1253 dbSNP
rs550337585 1264 dbSNP
rs1215858710 1275 dbSNP
rs982512352 1278 dbSNP
rs1461422412 1285 dbSNP
rs1242433407 1286 dbSNP
rs1201738155 1287 dbSNP
rs1486827294 1297 dbSNP
rs28742086 1300 dbSNP
rs752400236 1312 dbSNP
rs961960260 1313 dbSNP
rs974333191 1314 dbSNP
rs1027418660 1316 dbSNP
rs959330361 1317 dbSNP
rs1313049034 1324 dbSNP
rs1384370427 1328 dbSNP
rs974422638 1332 dbSNP
rs1288583921 1333 dbSNP
rs990909456 1337 dbSNP
rs1431104081 1340 dbSNP
rs1358214550 1342 dbSNP
rs533030841 1353 dbSNP
rs1165139623 1362 dbSNP
rs1444688327 1364 dbSNP
rs917966132 1367 dbSNP
rs1181245095 1368 dbSNP
rs1397304073 1369 dbSNP
rs1430176601 1369 dbSNP
rs1435691160 1372 dbSNP
rs970798189 1373 dbSNP
rs1051867545 1374 dbSNP
rs551362383 1378 dbSNP
rs1359022685 1381 dbSNP
rs1289608981 1385 dbSNP
rs755665614 1388 dbSNP
rs1289540997 1391 dbSNP
rs1053970713 1396 dbSNP
rs893956913 1415 dbSNP
rs1366938810 1424 dbSNP
rs1335030464 1426 dbSNP
rs1439025391 1433 dbSNP
rs936605456 1434 dbSNP
rs1053683661 1435 dbSNP
rs1304167490 1438 dbSNP
rs921613171 1440 dbSNP
rs1424852553 1448 dbSNP
rs1364592035 1449 dbSNP
rs1000964323 1451 dbSNP
rs1160881805 1453 dbSNP
rs931612391 1456 dbSNP
rs1051376621 1460 dbSNP
rs1371518996 1462 dbSNP
rs1373562653 1462 dbSNP
rs1239139977 1465 dbSNP
rs1192444078 1467 dbSNP
rs890238556 1469 dbSNP
rs1283877570 1470 dbSNP
rs1199896533 1471 dbSNP
rs188700830 1485 dbSNP
rs1289945488 1490 dbSNP
rs906612967 1515 dbSNP
rs1216333491 1516 dbSNP
rs1264370829 1518 dbSNP
rs1340205821 1520 dbSNP
rs1251216853 1526 dbSNP
rs1003570231 1530 dbSNP
rs1225828529 1536 dbSNP
rs1037630519 1537 dbSNP
rs1487194407 1538 dbSNP
rs1195152337 1541 dbSNP
rs1404725997 1544 dbSNP
rs1253228325 1545 dbSNP
rs897297485 1546 dbSNP
rs1026052824 1549 dbSNP
rs1178420365 1558 dbSNP
rs1406170632 1559 dbSNP
rs1431359024 1562 dbSNP
rs761924766 1564 dbSNP
rs1402974784 1565 dbSNP
rs1031131189 1569 dbSNP
rs1245176361 1569 dbSNP
rs1438643549 1570 dbSNP
rs1249848413 1574 dbSNP
rs1462997757 1575 dbSNP
rs1264379628 1576 dbSNP
rs1160418721 1577 dbSNP
rs1272687467 1578 dbSNP
rs1240677873 1579 dbSNP
rs1335994169 1581 dbSNP
rs1327521880 1584 dbSNP
rs1444018601 1585 dbSNP
rs533773399 1588 dbSNP
rs1337362156 1590 dbSNP
rs1459922408 1594 dbSNP
rs1422754835 1597 dbSNP
rs555219121 1600 dbSNP
rs1027204460 1602 dbSNP
rs956917301 1604 dbSNP
rs1363448848 1606 dbSNP
rs1176853036 1607 dbSNP
rs1462758484 1609 dbSNP
rs959362594 1624 dbSNP
rs1012291108 1625 dbSNP
rs1441213400 1629 dbSNP
rs976394113 1634 dbSNP
rs1375188332 1645 dbSNP
rs1224299060 1650 dbSNP
rs1311877563 1653 dbSNP
rs1332091953 1654 dbSNP
rs1350939394 1658 dbSNP
rs1024971863 1659 dbSNP
rs971245994 1660 dbSNP
rs567334185 1663 dbSNP
rs1384410948 1667 dbSNP
rs1315175575 1671 dbSNP
rs1451767934 1673 dbSNP
rs922926065 1673 dbSNP
rs1357375865 1674 dbSNP
rs201346055 1678 dbSNP
rs963145980 1678 dbSNP
rs1401146207 1681 dbSNP
rs974541923 1683 dbSNP
rs1457054675 1685 dbSNP
rs923786230 1686 dbSNP
rs1231559504 1693 dbSNP
rs1287185687 1699 dbSNP
rs538476710 1700 dbSNP
rs1183075002 1702 dbSNP
rs1178337363 1703 dbSNP
rs957864291 1705 dbSNP
rs1413684894 1709 dbSNP
rs779357992 1710 dbSNP
rs954596906 1711 dbSNP
rs556759232 1714 dbSNP
rs578255203 1715 dbSNP
rs1446832410 1716 dbSNP
rs1395236263 1718 dbSNP
rs1465317694 1719 dbSNP
rs1327049035 1720 dbSNP
rs935616820 1727 dbSNP
rs1291801321 1731 dbSNP
rs1361181115 1731 dbSNP
rs879251293 1733 dbSNP
rs1227250765 1740 dbSNP
rs931893680 1745 dbSNP
rs1051406863 1746 dbSNP
rs1431170971 1746 dbSNP
rs1442631155 1746 dbSNP
rs1302264439 1747 dbSNP
rs1353492932 1753 dbSNP
rs1296150925 1760 dbSNP
rs545670648 1762 dbSNP
rs1293402732 1763 dbSNP
rs1403733259 1764 dbSNP
rs1316702964 1769 dbSNP
rs1169035830 1775 dbSNP
rs1475390941 1781 dbSNP
rs940453732 1786 dbSNP
rs1212484430 1789 dbSNP
rs75949982 1790 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gcucacacucuagugUGGAGGg 5'
                         |||||| 
Target 5' ---------uucccgACCUCCa 3'
 		1 - 13
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000361742.3 | 3UTR | UUCCCGACCUCCACCUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
231 hsa-miR-3689d Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059166 TXNIP thioredoxin interacting protein 2 4
MIRT080699 KIAA1468 KIAA1468 2 2
MIRT218770 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT278059 KHNYN KH and NYN domain containing 2 2
MIRT345933 EIF4A1 eukaryotic translation initiation factor 4A1 2 2
MIRT366238 VMA21 VMA21, vacuolar ATPase assembly factor 2 2
MIRT449689 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 2 2
MIRT451149 C19orf53 chromosome 19 open reading frame 53 2 2
MIRT451266 NDUFA11 NADH:ubiquinone oxidoreductase subunit A11 2 2
MIRT451375 C19orf43 telomerase RNA component interacting RNase 2 2
MIRT451570 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451585 HIRIP3 HIRA interacting protein 3 2 2
MIRT451614 MEIS3P1 Meis homeobox 3 pseudogene 1 2 2
MIRT451763 ZNF611 zinc finger protein 611 2 6
MIRT452383 LY6E lymphocyte antigen 6 family member E 2 4
MIRT452573 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452735 PTGES3L prostaglandin E synthase 3 like 2 6
MIRT452867 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452975 CABP4 calcium binding protein 4 2 2
MIRT453215 CERS1 ceramide synthase 1 2 2
MIRT453259 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT453449 GLG1 golgi glycoprotein 1 2 2
MIRT453479 PITPNM3 PITPNM family member 3 2 2
MIRT453663 CD207 CD207 molecule 2 6
MIRT453724 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 2 2
MIRT453760 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT454181 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 6
MIRT454330 PPARA peroxisome proliferator activated receptor alpha 2 2
MIRT454338 CDKL1 cyclin dependent kinase like 1 2 2
MIRT454427 GTF2F1 general transcription factor IIF subunit 1 2 2
MIRT454665 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454825 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT455130 TBC1D25 TBC1 domain family member 25 2 2
MIRT455166 SUV39H1 suppressor of variegation 3-9 homolog 1 2 2
MIRT455416 RXRB retinoid X receptor beta 2 2
MIRT455668 GLO1 glyoxalase I 2 2
MIRT455999 CYP2C19 cytochrome P450 family 2 subfamily C member 19 2 2
MIRT456446 TMEM81 transmembrane protein 81 2 2
MIRT456642 NOS1AP nitric oxide synthase 1 adaptor protein 2 2
MIRT456728 TMEM239 transmembrane protein 239 2 2
MIRT457131 ASPH aspartate beta-hydroxylase 2 2
MIRT457157 MXRA7 matrix remodeling associated 7 2 2
MIRT457358 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT457458 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT457619 UPK3BL uroplakin 3B like 1 2 2
MIRT457692 ZNF587 zinc finger protein 587 2 2
MIRT457727 SMOX spermine oxidase 2 2
MIRT457788 VWA1 von Willebrand factor A domain containing 1 2 2
MIRT457875 THEM6 thioesterase superfamily member 6 2 4
MIRT457909 ZNF212 zinc finger protein 212 2 2
MIRT458395 ABCF1 ATP binding cassette subfamily F member 1 2 2
MIRT458496 MARVELD2 MARVEL domain containing 2 2 2
MIRT458544 CYP2B6 cytochrome P450 family 2 subfamily B member 6 2 2
MIRT458577 TCOF1 treacle ribosome biogenesis factor 1 2 2
MIRT458732 CES2 carboxylesterase 2 2 2
MIRT458814 ZNF843 zinc finger protein 843 2 2
MIRT458931 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT459341 ZNF17 zinc finger protein 17 2 2
MIRT459365 MPLKIP M-phase specific PLK1 interacting protein 2 6
MIRT459572 NLGN2 neuroligin 2 2 2
MIRT460015 DTX3L deltex E3 ubiquitin ligase 3L 2 4
MIRT460144 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT460653 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT460798 VPS33A VPS33A, CORVET/HOPS core subunit 2 2
MIRT461058 KCNK6 potassium two pore domain channel subfamily K member 6 2 4
MIRT461458 SLC19A3 solute carrier family 19 member 3 2 2
MIRT461572 SCO1 SCO1, cytochrome c oxidase assembly protein 2 4
MIRT461927 TNFSF14 TNF superfamily member 14 2 2
MIRT461953 C3 complement C3 2 2
MIRT462278 KRR1 KRR1, small subunit processome component homolog 2 2
MIRT462744 EFNB1 ephrin B1 2 2
MIRT463136 ZNF451 zinc finger protein 451 2 4
MIRT463566 ZBTB39 zinc finger and BTB domain containing 39 2 6
MIRT463866 WNT7B Wnt family member 7B 2 2
MIRT464326 UST uronyl 2-sulfotransferase 2 2
MIRT464796 UBE2F ubiquitin conjugating enzyme E2 F (putative) 2 2
MIRT465034 TTC39C tetratricopeptide repeat domain 39C 2 2
MIRT466207 TMED10 transmembrane p24 trafficking protein 10 2 2
MIRT467007 SSBP2 single stranded DNA binding protein 2 2 2
MIRT467029 SRSF1 serine and arginine rich splicing factor 1 2 4
MIRT468001 SKI SKI proto-oncogene 2 2
MIRT468031 SIKE1 suppressor of IKBKE 1 2 6
MIRT468575 SERBP1 SERPINE1 mRNA binding protein 1 2 6
MIRT468834 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
MIRT468970 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT469450 REL REL proto-oncogene, NF-kB subunit 2 6
MIRT470888 PLXND1 plexin D1 2 2
MIRT470953 PKM pyruvate kinase, muscle 2 2
MIRT471828 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT472590 NACC1 nucleus accumbens associated 1 2 2
MIRT472805 MTMR12 myotubularin related protein 12 2 2
MIRT472818 MTMR10 myotubularin related protein 10 2 6
MIRT472914 MSN moesin 2 2
MIRT474558 KLHDC3 kelch domain containing 3 2 2
MIRT474716 KIF13A kinesin family member 13A 2 6
MIRT475279 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT475300 IFNLR1 interferon lambda receptor 1 2 2
MIRT475759 HDLBP high density lipoprotein binding protein 2 2
MIRT475786 HDGF heparin binding growth factor 2 2
MIRT475933 GXYLT2 glucoside xylosyltransferase 2 2 8
MIRT476212 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT476238 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 2 4
MIRT476799 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT477988 DNAL1 dynein axonemal light chain 1 2 2
MIRT478317 DDN dendrin 2 2
MIRT479257 CHSY1 chondroitin sulfate synthase 1 2 2
MIRT479344 CEP97 centrosomal protein 97 2 2
MIRT479522 CDCA4 cell division cycle associated 4 2 2
MIRT479906 CCDC117 coiled-coil domain containing 117 2 6
MIRT481147 AVL9 AVL9 cell migration associated 2 6
MIRT481735 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT482089 ALG8 ALG8, alpha-1,3-glucosyltransferase 2 2
MIRT482389 AEN apoptosis enhancing nuclease 2 2
MIRT483093 TFPI tissue factor pathway inhibitor 2 2
MIRT484246 ANK1 ankyrin 1 2 2
MIRT484342 EPN1 epsin 1 2 4
MIRT489141 C5orf38 chromosome 5 open reading frame 38 2 2
MIRT489163 MRPL12 mitochondrial ribosomal protein L12 2 4
MIRT489547 SOX11 SRY-box 11 2 4
MIRT489780 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT489799 KRT80 keratin 80 2 6
MIRT490535 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT492198 SOCS1 suppressor of cytokine signaling 1 2 2
MIRT492283 SHISA6 shisa family member 6 2 4
MIRT501059 SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 2 4
MIRT501094 SLC5A6 solute carrier family 5 member 6 2 4
MIRT503870 CBS cystathionine-beta-synthase 2 2
MIRT507981 BCL2L13 BCL2 like 13 2 4
MIRT508125 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT508205 SLC35E1 solute carrier family 35 member E1 2 2
MIRT508385 SPTBN2 spectrin beta, non-erythrocytic 2 2 4
MIRT510308 PDRG1 p53 and DNA damage regulated 1 2 2
MIRT510462 ZDHHC18 zinc finger DHHC-type containing 18 2 2
MIRT512227 ATXN3 ataxin 3 2 8
MIRT512665 STEAP3 STEAP3 metalloreductase 2 2
MIRT514184 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT515053 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515138 ZNF799 zinc finger protein 799 2 4
MIRT515452 ZNF747 zinc finger protein 747 2 2
MIRT515791 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT515905 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT516129 MRPS16 mitochondrial ribosomal protein S16 2 6
MIRT516679 ZNF860 zinc finger protein 860 2 4
MIRT516750 ZNF100 zinc finger protein 100 2 2
MIRT516971 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT517491 NPAP1 nuclear pore associated protein 1 2 2
MIRT517774 PROM2 prominin 2 2 2
MIRT517938 ZNF431 zinc finger protein 431 2 4
MIRT518386 ZNF250 zinc finger protein 250 2 2
MIRT520621 TMEM41B transmembrane protein 41B 2 2
MIRT521028 SLC30A5 solute carrier family 30 member 5 2 2
MIRT521454 RAD51 RAD51 recombinase 2 2
MIRT521564 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT521581 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT522263 NKRF NFKB repressing factor 2 2
MIRT522410 MXI1 MAX interactor 1, dimerization protein 2 2
MIRT522543 MED28 mediator complex subunit 28 2 6
MIRT522915 KCNE3 potassium voltage-gated channel subfamily E regulatory subunit 3 2 2
MIRT523029 IGF1 insulin like growth factor 1 2 2
MIRT523854 ESPL1 extra spindle pole bodies like 1, separase 2 4
MIRT524184 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524520 CDK19 cyclin dependent kinase 19 2 2
MIRT524674 C12orf5 TP53 induced glycolysis regulatory phosphatase 2 2
MIRT530257 ZNF620 zinc finger protein 620 2 2
MIRT540691 BMP3 bone morphogenetic protein 3 2 2
MIRT540976 C17orf85 nuclear cap binding subunit 3 2 2
MIRT545505 NAP1L1 nucleosome assembly protein 1 like 1 2 2
MIRT545631 GGCX gamma-glutamyl carboxylase 2 2
MIRT547358 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit 2 2
MIRT550701 MPL MPL proto-oncogene, thrombopoietin receptor 2 4
MIRT550717 PMPCA peptidase, mitochondrial processing alpha subunit 2 4
MIRT551203 NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 2 2
MIRT553999 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 2 4
MIRT561081 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT563523 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT564463 SLC35E2 solute carrier family 35 member E2 2 2
MIRT565233 TRAF6 TNF receptor associated factor 6 2 2
MIRT566618 NKAP NFKB activating protein 2 2
MIRT569527 AP5Z1 adaptor related protein complex 5 zeta 1 subunit 2 2
MIRT569639 QPCT glutaminyl-peptide cyclotransferase 2 2
MIRT570253 SSPN sarcospan 2 2
MIRT570570 OTUD7B OTU deubiquitinase 7B 2 2
MIRT570621 MTF2 metal response element binding transcription factor 2 2 2
MIRT571098 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 2
MIRT575196 Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT575554 Cd99 CD99 antigen 2 2
MIRT575634 Gnl3l guanine nucleotide binding protein-like 3 (nucleolar)-like 2 2
MIRT608267 NOP14 NOP14 nucleolar protein 2 2
MIRT609314 FXYD6 FXYD domain containing ion transport regulator 6 2 2
MIRT627670 RPL28 ribosomal protein L28 2 2
MIRT631185 TSPAN14 tetraspanin 14 2 2
MIRT631964 YIPF5 Yip1 domain family member 5 2 2
MIRT632885 GINM1 glycoprotein integral membrane 1 2 2
MIRT642618 CDKN3 cyclin dependent kinase inhibitor 3 2 2
MIRT645609 TSPAN6 tetraspanin 6 2 2
MIRT662227 PGBD4 piggyBac transposable element derived 4 2 2
MIRT662329 MYLK3 myosin light chain kinase 3 2 2
MIRT662725 LRRC3C leucine rich repeat containing 3C 2 2
MIRT665520 USP14 ubiquitin specific peptidase 14 2 2
MIRT666634 RBMS2 RNA binding motif single stranded interacting protein 2 2 2
MIRT668969 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT670925 DESI1 desumoylating isopeptidase 1 2 2
MIRT673939 ZNF500 zinc finger protein 500 2 2
MIRT674675 PLCE1 phospholipase C epsilon 1 2 2
MIRT675230 MAK male germ cell associated kinase 2 2
MIRT680864 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT681047 ZDBF2 zinc finger DBF-type containing 2 2 2
MIRT681105 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT683553 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT684508 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684812 BRIX1 BRX1, biogenesis of ribosomes 2 2
MIRT685981 CCDC77 coiled-coil domain containing 77 2 2
MIRT686709 TBC1D19 TBC1 domain family member 19 2 2
MIRT686867 SLC25A32 solute carrier family 25 member 32 2 2
MIRT688908 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT691208 KLHL30 kelch like family member 30 2 2
MIRT692298 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT694380 MTA1 metastasis associated 1 2 2
MIRT696497 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT700686 POLR3D RNA polymerase III subunit D 2 2
MIRT701088 PAPOLG poly(A) polymerase gamma 2 2
MIRT703373 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT706189 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT706648 SMIM19 small integral membrane protein 19 2 2
MIRT709466 KRTAP19-1 keratin associated protein 19-1 2 2
MIRT709699 DMWD DM1 locus, WD repeat containing 2 2
MIRT710693 LYRM4 LYR motif containing 4 2 2
MIRT713457 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT722409 RARS2 arginyl-tRNA synthetase 2, mitochondrial 2 2
MIRT725391 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT725548 DNMT3A DNA methyltransferase 3 alpha 2 2

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