miRTarBase - #MIRT571137


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pre-miRNA Information
pre-miRNA hsa-mir-1284   
Genomic Coordinates chr3: 71541970 - 71542089
Synonyms MIRN1284, hsa-mir-1284, MIR1284
Description Homo sapiens miR-1284 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1284
Sequence 30| UCUAUACAGACCCUGGCUUUUC |51
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30511077 21 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1214878057 1 dbSNP
rs1247879523 2 dbSNP
rs1463875891 2 dbSNP
rs917753908 4 dbSNP
rs370463488 6 dbSNP
rs1423493129 7 dbSNP
rs1471537963 7 dbSNP
rs764647172 11 dbSNP
rs763621942 12 dbSNP
rs775929072 14 dbSNP
rs1461964877 17 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TTC33   
Synonyms OSRF
Description tetratricopeptide repeat domain 33
Transcript NM_012382   
Expression
Putative miRNA Targets on TTC33
3'UTR of TTC33
(miRNA target sites are highlighted)		 
>TTC33|NM_012382|3'UTR
   1 AGCAGTATGCATAGGATTATTTGAATCTGTCTTTTTGATTGCCTCTTGAAGTTTTGACATAGAGACATTTACTCTGGAGA
  81 TAGATAGGAGAACGCCTGGTTGTAAAATATGTTTTTCAGATGAGGCATATAAAAACTAAAATGGCAGGATTATTGTATAG
 161 TGTTTGGAATATGCTTTGATAAGTTATGATTTATATTTCTCAAGGTTAAAATTCTGAGTAAAATGGTCTTTGATTAATAA
 241 ACTTAGTTTAATCTGAATATGTAAATGAATACATTTTAAAGACAAAACTTGAAAAATGTATTCTTGAATAGTGAATAATT
 321 TGATCAATGTTACTGAAATGCTGTCTCAACTTTTGTTTTATGATAAAGGAAGTGTGTGATTTCCCTCCCTCTGAGAAATA
 401 TACTGCGCTTAATATTTGCTGTCTTTTTCTTGCTTCATTAGAGTAAGTCTGTCAGAAAGCTTGAATATTTTTGACATTCA
 481 TTTTGATTCAAAGTTGTCATTTGGTTATATGTGGAATCTTTGAAAGTTTGGCTGAAAATGCACACAAATGTGTACATTCT
 561 GAACATTTTCTGAAGTTTCTCTTAATTCTGATTTGTGTTTCTGTTTTGACTTTGAAGTTGTAACAATGATAGTTGTCTCC
 641 TTCAGTATTTGGTAAAAGTGTAAAGTATTGATAAATATGAGAATGATGGTTTTATTTTTTAATTGTTACAGTAAGTAATC
 721 CTTACCACAAATGAGTCATTTTTAAAATATGCATTTTTAAATGAATGGCTTTTACAGATAGGTTAATGACAATTGTACTG
 801 CTATATTATCCCAGTCAAAACCAATACTTTCTTTTCTTTATTTTACAAAGCTTTAAAAACCCTGGAAACAACTTACTTCT
 881 TGCTTGTGTCTTTCCATTTGATGACTGGGAATTACTTTTCTAGATAACTTTTTTTGAAACTACTCAGTGAAATGAAAAAT
 961 AATTACAATTTTAAATAGCTAATTATATCTTTCTAAAAATAAAAAAGTAGGGCTGTTATTAGAGTGCCAATGAATAAATA
1041 ACTTAAGCACAAAATACATAGAAATTGGAATGTGATTTATAGTACAATCTCATGAGTATGAAAAGGCTATATTAAAAAAA
1121 ATTTTATTGAAAGTCCACAGTCATATTCACAAACCAATACTGTCATTGCTAATCTGAACTATTATTTTTATACTATATAT
1201 TGTAGTACAATAATATAGAACTGTTGGGTTCTGTTACTTCTGACACTCAGGAAGATACTATTGGTGTATTAATTTTATCT
1281 TTGTTAGAGATGAAAGTAGCCCACTTTATGTTAAAGATCTTACTACTGTTGGAGCTTATAAGTAATGATCTACATTTTTT
1361 ATGAAGATGGTTTTTAAAACTTTTGTTTTATTGGAATGCATATCTCTTTTCAGGGTTGGAGAAATTAGCACTTGCCTTGA
1441 AAAGAATATTCTTTCCTTAAGTTATATCATCAGAAAATTAGCTCTGGTTAGAGAGGTTAGTTTCAGAGTGCTCCAAAAAA
1521 TATGTTAATTATTTTATTTTGTTTAATAAAGAACATTCTCAAAACGTAAATAGGTATCTAGAGAAGTGAGTACTCAACAT
1601 TTGGTATATTGTTTTGAGTAATGGATGTTTGTTTTTTGTGTAATTTGTGAATAAATAGTTTTTTTCTGCATTTTGAAGAT
1681 TTTCCTATTATTTTATGTTGTTAGCTTTTGAAAAATTAGATTGATCTACTTAGTGTCTTTCTTATATGAACTTAATATAT
1761 TTAAAGTACCTTGCATGGTGCCTCACACATGAAGTAATGCCAGCTATTTCAGTAAATGCTAGCTATTTCTATGAAGAACT
1841 TGAGTTAGTTTGGAGATATTTAACCTCAATTTCCTCTGATTTTAAAAAAGGAGAACTTTTTTTGTAATCCTTTCCTTATC
1921 TGAAAGTAAGAAGTCTCTGATTCCAGTATTATAGGAGAGATAGTGGGATTTTTCTTGACAGGGTCTATAGCTCAAGTCCC
2001 AAAGAGGCAAGACTCAGGATGGAATGCATGTGGCCACTAGGCCCTGTTATAAGAACCTAGTGTTTCCTCTGTACTGGCAT
2081 GGTAGGCCAAGTTAGTCTCTTTCTTACCCAGATATAAGACATAAAATAGTTTAGACATAAGACAGAGGAGAAAAAGAAAC
2161 AGTAAGTTATGGAGAAGGAAGGCAGCTCATTTCTGCAGGCCCCTCAAAATGCTTATTTTAGCTCATACTCTTCTATGCGT
2241 GAAGAGAAAAATGCACCCATTATTTTACAAGGATGTGAATACTGATATACAAACATAGACTAAGCTTGTTAATTTTAATA
2321 ACAAATCTTTATGAATCTGAAGAGAATTGATGTTCATGATAATGATATAGATGTTTAATATACTTTCTGAAATAACACTG
2401 TTTACTGTTCAAGTTATATTGACTATAATTTACATTATTCTTGTTTGAGAATTGTATGGCATAGACACTCATTAGTCAGA
2481 GTGTCTAGACATCCAGACCATGCCTGATAACACAAGAATCATATATCATTCTCTAGAAAACAGGCTGTTTGGTTATAGAG
2561 TATTTATCTTAAATATATTAACAGACACTACATAAACATTGAAAAGCCATGCAAGTTATAGCTCACAGGAGCCAGATCTA
2641 CTGCAACTGGGGCCTACATACAAAATTTTATGGCAGTGGTTTCAGTATGACAATCTTTTGAATTGATGCCGTATGGTAAA
2721 ACTATAAAGATTTTTTAAAAGCTCTGTCTCAGCTAGAATTTTTAAGATTATAACTGAACAGTATAGCCCTTTTAGTTGTT
2801 TGAAAATTACATAATGATTCAAAAGCTTGTTTCACTGCCTTTCCCAGCACTAAGAAAATTAACAATCATTTCTTTTAATT
2881 TCCTTGAATCAGAGCCATTCTAAAGTGACTCTGGACCAGCAATTCTGAGCTATGATTTCATGATACATGTATTAATATCT
2961 AAATGAGTTGTGAGTTGACATAAGAACCATAGTTCCATAATAATTATCTTCAAATCAATGGATATCTTAAATGTGTTTTT
3041 TTCTTCCTTAGAGATTATTATTAAACTGATGTATTTGATAATAAAGAATTTTAGGACTGAGAAAGTTAAGTTTTTCTTAC
3121 CAATAATAAGATATTGAAATATATAAATTATAAAACAGAAATAAAATGAAATAAAGGAGGTTATCCCTAAAGTCATTTAC
3201 CTTAGTCACTTGCAATTAAATATGGTTACTTCGGAAGAAGAAGTGTGGCCCTAAAGCTACTGTAACATGAATCATGCCCT
3281 AATGTGCACTATATATGAACTACTTTGGTCAGAAGGCAGCGGCGGGTAAGGATGGCTTCCTCTCACAGTGCTTCTTAGGC
3361 TATCCATTTACCAAGGAATTCTAATCTCTTTCTCTCACTTCACCAGGAAAGGAGGGAGTTTAAGATATAGAACTGGGCAT
3441 GCTAGCCTCTTTTTTCCCTTTTGTGGATTTGTCATAACTGCAGAGAACCGATGTTGTGGTCTCTTGCCAGCTACATTGTG
3521 AACCTTGCAGTGAAAGTTCTTTGCCTCTGCAAAGGGAGATTTGTGCTTGTGCAGAACTGCCCATGCCTTAGTAAGCAGGT
3601 CTGTCTAATTCTAAGTTCAATATCTGGTGGCTATTGTTGGCATAAACTTAAAGTACATCCTCTAACCTAGCCTTTTTCAG
3681 CAGTAAACTTAAAATATTGAATCTCCATCTGTCTGTGTCTCAAGTGGTTCAGAGGTCAGGAGAGGAGAGGGACATTATTT
3761 TATGACTCCCTCAAACTTTAACAAAGACTAGTGCAGATTATATTTCGAAGTAAGCATGAGATATATTAAAAACCACATGT
3841 GGGAATTCTTTCCTAATTTTAGAGGTTTTTTTTAAATAATGGAAATTCTATTGAAATTGAGTAGTGTTAATTACAAGGCA
3921 ACAGGTAAACATTTGTTCAGGATATTTAAAAGGTCTGCTGAGTTGGAATTGTGACAGACCACATTGTTGACTCTAGATTG
4001 AATTGGAAGGGAAGAATGTGAAATGAATTAGGATATCCTCTGTTCACCTCTATTAACTTTCTTAAATGAGTATAACTTAG
4081 AAATAATAAAATGCAAGTATTTTAACGTTATAGTTGGGAGAGTTTTGACAAATGTAAACACCCACTTCACCACCACTACC
4161 ATCCTGATATAGTGTGTGTCCATCACCCAAAAAGTTCTCTAAAGCCCTTTTGCAGTTGGTTCCCCTCCACCTGAACAGCC
4241 ATCCCTAGTCAACTACTTTTCTGCTTTCTGTGGCTATACGTTAGATTTGACTTCAGAATTCTAGAGTTTGAAATAAATAG
4321 GCCATATAATATGCACTCTTTTTGTGTCTGACTTTTTTTTTGCTTAACATGATGCTTTTGAAACCCATCCATGTTGAGAT
4401 TCATCCATGTTATCATGTGTATCAATAATAAGTTCCTTTTTATTGCTGAATAGTATTCTAGTATATAGATATACCACAAT
4481 TTGTTTAGCTGTTCACCTATTGATGGACATTTAGGTTGTTTCAAGTTTTGATCTATTATGAATAAAGCTGCTATATATAT
4561 AAATCACAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuUUUCGGUCCCA--GACAUAUCu 5'
            || | |||| |  :||||||| 
Target 5' aaAATGGCAGGATTATTGTATAGt 3'
 138 - 161 162.00 -13.80
2 
miRNA  3' cuuuUCGGUCCCAGACAUAUCu 5'
              ||:||| |  ||| ||| 
Target 5' cattAGTCAGAG--TGTCTAGa 3'
 2470 - 2489 126.00 -11.10
3 
miRNA  3' cuUUUCGGUCC--CAGAC--AUAUCu 5'
            :||  ||||  ||:||  ||||| 
Target 5' taGAAAACAGGCTGTTTGGTTATAGa 3'
 2534 - 2559 126.00 -13.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31571129 7 COSMIC
COSN31609180 23 COSMIC
COSN30151999 28 COSMIC
COSN30116004 40 COSMIC
COSN30138813 45 COSMIC
COSN31544712 62 COSMIC
COSN30149378 83 COSMIC
COSN31574050 125 COSMIC
COSN20966616 148 COSMIC
COSN2106006 200 COSMIC
COSN32056869 322 COSMIC
COSN22269693 483 COSMIC
COSN2106005 515 COSMIC
COSN22312791 681 COSMIC
COSN22849412 738 COSMIC
COSN22007967 1074 COSMIC
COSN7941735 1083 COSMIC
COSN9436307 1216 COSMIC
COSN7941734 1233 COSMIC
COSN7941733 1421 COSMIC
COSN6297135 1467 COSMIC
COSN16552300 1565 COSMIC
COSN20101163 2295 COSMIC
COSN24036636 2349 COSMIC
COSN16474886 2382 COSMIC
COSN6297134 2468 COSMIC
COSN2106004 2783 COSMIC
COSN21630294 3902 COSMIC
COSN2106003 3924 COSMIC
COSN29677508 4353 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1024689318 3 dbSNP
rs750859203 9 dbSNP
rs72747957 11 dbSNP
rs762086189 12 dbSNP
rs1270035569 16 dbSNP
rs774718470 25 dbSNP
rs754362168 30 dbSNP
rs960368764 37 dbSNP
rs370885868 43 dbSNP
rs375915098 45 dbSNP
rs537081732 48 dbSNP
rs1438431352 59 dbSNP
rs1177118357 60 dbSNP
rs570236469 62 dbSNP
rs1420757748 69 dbSNP
rs1031109335 74 dbSNP
rs1426390530 80 dbSNP
rs1435273736 88 dbSNP
rs111496199 90 dbSNP
rs1380526778 93 dbSNP
rs10737963 94 dbSNP
rs1466227393 102 dbSNP
rs539613836 114 dbSNP
rs1333399739 120 dbSNP
rs566273484 139 dbSNP
rs547442534 144 dbSNP
rs529345614 148 dbSNP
rs1369541485 154 dbSNP
rs1217194355 157 dbSNP
rs1187641208 161 dbSNP
rs1282253403 163 dbSNP
rs1318124611 166 dbSNP
rs1200109590 167 dbSNP
rs1255665238 173 dbSNP
rs1441714551 174 dbSNP
rs1204519865 214 dbSNP
rs893428941 215 dbSNP
rs373596714 218 dbSNP
rs561887531 227 dbSNP
rs1354198496 251 dbSNP
rs549749191 257 dbSNP
rs1478293480 261 dbSNP
rs1039982420 272 dbSNP
rs1421648811 286 dbSNP
rs931810659 294 dbSNP
rs942644544 295 dbSNP
rs1222229790 296 dbSNP
rs748867684 300 dbSNP
rs1358779071 306 dbSNP
rs891148990 308 dbSNP
rs74948401 325 dbSNP
rs1340875917 327 dbSNP
rs1354104221 330 dbSNP
rs1275912395 332 dbSNP
rs1300665210 337 dbSNP
rs944127729 346 dbSNP
rs563409523 360 dbSNP
rs1360231479 387 dbSNP
rs983220285 389 dbSNP
rs918408565 393 dbSNP
rs545303310 395 dbSNP
rs755809779 400 dbSNP
rs941191024 401 dbSNP
rs1415525273 402 dbSNP
rs753882188 405 dbSNP
rs1366904441 406 dbSNP
rs1163860484 407 dbSNP
rs931578825 409 dbSNP
rs1403585498 418 dbSNP
rs151161073 420 dbSNP
rs1361010340 429 dbSNP
rs1472215992 461 dbSNP
rs980931020 463 dbSNP
rs780854644 467 dbSNP
rs978234448 468 dbSNP
rs370818900 484 dbSNP
rs1325439566 499 dbSNP
rs1024660189 504 dbSNP
rs764871231 506 dbSNP
rs1448165233 507 dbSNP
rs991851700 511 dbSNP
rs559592254 517 dbSNP
rs1244492165 527 dbSNP
rs541274094 528 dbSNP
rs1213390513 539 dbSNP
rs1020869736 548 dbSNP
rs956484960 550 dbSNP
rs183135515 554 dbSNP
rs1000980788 559 dbSNP
rs903733159 567 dbSNP
rs1018513442 571 dbSNP
rs1007171830 584 dbSNP
rs1188483513 592 dbSNP
rs1239348812 593 dbSNP
rs1442856490 601 dbSNP
rs1227807015 610 dbSNP
rs1380774966 622 dbSNP
rs376342255 626 dbSNP
rs1332825177 639 dbSNP
rs1029338351 652 dbSNP
rs995986904 659 dbSNP
rs1051136843 660 dbSNP
rs1335765246 662 dbSNP
rs112189850 663 dbSNP
rs1451188475 667 dbSNP
rs1314977929 669 dbSNP
rs35559063 690 dbSNP
rs1378232786 696 dbSNP
rs1242803720 703 dbSNP
rs1259392108 704 dbSNP
rs1040258073 705 dbSNP
rs1038868058 709 dbSNP
rs1351253933 720 dbSNP
rs193098362 723 dbSNP
rs941173256 724 dbSNP
rs916434678 732 dbSNP
rs1179542148 733 dbSNP
rs374305920 753 dbSNP
rs377563507 783 dbSNP
rs1478230723 785 dbSNP
rs939302570 786 dbSNP
rs944093674 790 dbSNP
rs1403367324 793 dbSNP
rs1468850558 793 dbSNP
rs558130256 805 dbSNP
rs189227074 807 dbSNP
rs566294105 818 dbSNP
rs1449729390 819 dbSNP
rs1305491638 828 dbSNP
rs931315798 830 dbSNP
rs1335555823 831 dbSNP
rs1234354730 835 dbSNP
rs1276853223 845 dbSNP
rs1321623364 861 dbSNP
rs1223103610 869 dbSNP
rs1478069435 875 dbSNP
rs920163621 881 dbSNP
rs981010290 883 dbSNP
rs1459133656 910 dbSNP
rs1418730678 912 dbSNP
rs62356506 914 dbSNP
rs1200666176 923 dbSNP
rs1426804485 924 dbSNP
rs1489380921 929 dbSNP
rs1170936352 939 dbSNP
rs1247481448 942 dbSNP
rs535686856 943 dbSNP
rs1425235887 946 dbSNP
rs1459968856 947 dbSNP
rs568195181 952 dbSNP
rs1296976994 958 dbSNP
rs918073556 966 dbSNP
rs1221043491 974 dbSNP
rs989649550 979 dbSNP
rs992321384 981 dbSNP
rs1396343575 989 dbSNP
rs956454359 993 dbSNP
rs1305383461 994 dbSNP
rs1259997506 1007 dbSNP
rs1199360879 1011 dbSNP
rs370849420 1024 dbSNP
rs185113 1029 dbSNP
rs1320095299 1030 dbSNP
rs1007140729 1033 dbSNP
rs182569297 1037 dbSNP
rs979090145 1054 dbSNP
rs766229284 1058 dbSNP
rs1490124406 1059 dbSNP
rs1193943563 1081 dbSNP
rs1264810327 1086 dbSNP
rs1426242226 1090 dbSNP
rs994146454 1092 dbSNP
rs1368512636 1109 dbSNP
rs1458912189 1117 dbSNP
rs1166007015 1119 dbSNP
rs1364167381 1120 dbSNP
rs1364288191 1122 dbSNP
rs531571395 1122 dbSNP
rs1038430830 1124 dbSNP
rs1028680626 1130 dbSNP
rs1203551107 1131 dbSNP
rs894971403 1132 dbSNP
rs996081768 1135 dbSNP
rs570832608 1157 dbSNP
rs965982562 1160 dbSNP
rs551339368 1163 dbSNP
rs533251997 1171 dbSNP
rs939271562 1172 dbSNP
rs1217009174 1184 dbSNP
rs115453047 1185 dbSNP
rs1004719645 1210 dbSNP
rs1274656194 1211 dbSNP
rs1439659096 1213 dbSNP
rs1391845165 1220 dbSNP
rs1383862212 1244 dbSNP
rs1424442815 1252 dbSNP
rs945033173 1258 dbSNP
rs541208806 1260 dbSNP
rs1451957279 1264 dbSNP
rs1288494582 1275 dbSNP
rs989230498 1288 dbSNP
rs529127643 1290 dbSNP
rs1312862423 1291 dbSNP
rs1381899569 1293 dbSNP
rs911390665 1300 dbSNP
rs964490633 1300 dbSNP
rs1314899689 1304 dbSNP
rs1353857495 1306 dbSNP
rs1047604598 1321 dbSNP
rs1256152122 1322 dbSNP
rs1483952673 1323 dbSNP
rs985584947 1333 dbSNP
rs1168289285 1335 dbSNP
rs1434668629 1336 dbSNP
rs1444604490 1340 dbSNP
rs955530108 1341 dbSNP
rs1410690058 1353 dbSNP
rs561737495 1369 dbSNP
rs1192775927 1376 dbSNP
rs1452744668 1402 dbSNP
rs1158674731 1404 dbSNP
rs1359913570 1406 dbSNP
rs1471015478 1407 dbSNP
rs765378192 1416 dbSNP
rs1405416501 1421 dbSNP
rs1447502778 1424 dbSNP
rs1029884137 1428 dbSNP
rs543516253 1444 dbSNP
rs548627438 1455 dbSNP
rs1222934034 1459 dbSNP
rs1179332867 1463 dbSNP
rs1325190523 1466 dbSNP
rs1221273344 1469 dbSNP
rs557733676 1477 dbSNP
rs1457402526 1490 dbSNP
rs1262018490 1496 dbSNP
rs114408049 1510 dbSNP
rs1199897427 1520 dbSNP
rs1212795365 1522 dbSNP
rs898473840 1527 dbSNP
rs1278280719 1529 dbSNP
rs1232570178 1541 dbSNP
rs1176947261 1548 dbSNP
rs1368322645 1551 dbSNP
rs1311091152 1555 dbSNP
rs1017380557 1561 dbSNP
rs1045073935 1562 dbSNP
rs948299392 1565 dbSNP
rs837119 1566 dbSNP
rs1466149018 1571 dbSNP
rs1467459002 1574 dbSNP
rs1055139008 1576 dbSNP
rs1359681626 1581 dbSNP
rs1352639030 1599 dbSNP
rs1003297189 1617 dbSNP
rs906373771 1622 dbSNP
rs554071883 1625 dbSNP
rs1402779760 1628 dbSNP
rs572221769 1638 dbSNP
rs945314635 1638 dbSNP
rs867306572 1639 dbSNP
rs1215766912 1651 dbSNP
rs893464505 1657 dbSNP
rs1053488336 1658 dbSNP
rs910267449 1666 dbSNP
rs943018700 1666 dbSNP
rs935509951 1678 dbSNP
rs923690036 1685 dbSNP
rs750391737 1697 dbSNP
rs934122447 1701 dbSNP
rs1268373700 1713 dbSNP
rs1478200890 1721 dbSNP
rs1169680109 1723 dbSNP
rs191149705 1726 dbSNP
rs1409353437 1733 dbSNP
rs1165379204 1735 dbSNP
rs1367287923 1736 dbSNP
rs979573029 1738 dbSNP
rs569311383 1746 dbSNP
rs1422443446 1750 dbSNP
rs761944905 1752 dbSNP
rs1248460227 1763 dbSNP
rs1432420998 1765 dbSNP
rs1267950128 1771 dbSNP
rs921587519 1774 dbSNP
rs535626052 1775 dbSNP
rs568332698 1776 dbSNP
rs1293057973 1778 dbSNP
rs974442650 1783 dbSNP
rs1220654901 1786 dbSNP
rs1291354431 1793 dbSNP
rs1447835116 1804 dbSNP
rs1195566584 1817 dbSNP
rs965910766 1821 dbSNP
rs1475122388 1844 dbSNP
rs556197264 1846 dbSNP
rs1386963737 1866 dbSNP
rs1209177626 1874 dbSNP
rs767154658 1883 dbSNP
rs1356347641 1892 dbSNP
rs185654260 1893 dbSNP
rs1315786748 1896 dbSNP
rs1240362105 1904 dbSNP
rs1344098685 1904 dbSNP
rs1316377361 1909 dbSNP
rs1385563620 1914 dbSNP
rs1315968054 1920 dbSNP
rs1244377374 1928 dbSNP
rs1304158887 1929 dbSNP
rs1351832883 1934 dbSNP
rs984049733 1937 dbSNP
rs1446512019 1944 dbSNP
rs1204343553 1952 dbSNP
rs1245013567 1958 dbSNP
rs1004691678 1959 dbSNP
rs1442757200 1960 dbSNP
rs950628860 1979 dbSNP
rs1182899320 1983 dbSNP
rs1364239294 1987 dbSNP
rs1471003860 1988 dbSNP
rs959374431 1995 dbSNP
rs1027514933 2007 dbSNP
rs570902886 2015 dbSNP
rs898614978 2016 dbSNP
rs1414572181 2028 dbSNP
rs1379795383 2029 dbSNP
rs528584236 2034 dbSNP
rs1336646562 2042 dbSNP
rs1451165101 2042 dbSNP
rs1412677310 2044 dbSNP
rs559473676 2049 dbSNP
rs1362164264 2050 dbSNP
rs1241548523 2060 dbSNP
rs148606007 2082 dbSNP
rs776467020 2083 dbSNP
rs527715909 2099 dbSNP
rs1224332794 2101 dbSNP
rs1453244367 2108 dbSNP
rs1012206712 2111 dbSNP
rs1166984123 2113 dbSNP
rs896710015 2140 dbSNP
rs1424543079 2148 dbSNP
rs115811801 2162 dbSNP
rs935620099 2166 dbSNP
rs1439369369 2171 dbSNP
rs774075059 2176 dbSNP
rs760954659 2184 dbSNP
rs1480585001 2189 dbSNP
rs1264260320 2190 dbSNP
rs1426676332 2199 dbSNP
rs893672166 2206 dbSNP
rs775923758 2207 dbSNP
rs1485331758 2210 dbSNP
rs946453555 2211 dbSNP
rs1053711259 2222 dbSNP
rs921680669 2236 dbSNP
rs146403724 2238 dbSNP
rs944369110 2239 dbSNP
rs1292158938 2252 dbSNP
rs529062483 2257 dbSNP
rs983757119 2262 dbSNP
rs1342299413 2269 dbSNP
rs1222932423 2272 dbSNP
rs950694158 2273 dbSNP
rs1341431556 2274 dbSNP
rs772515787 2279 dbSNP
rs1051491374 2283 dbSNP
rs1243866061 2286 dbSNP
rs1027893845 2287 dbSNP
rs1490450198 2288 dbSNP
rs973300948 2290 dbSNP
rs1381499100 2294 dbSNP
rs933095874 2296 dbSNP
rs1374272506 2298 dbSNP
rs144876108 2298 dbSNP
rs3841135 2298 dbSNP
rs758894711 2298 dbSNP
rs1464030829 2301 dbSNP
rs1458457551 2303 dbSNP
rs962729396 2304 dbSNP
rs143892043 2308 dbSNP
rs1370345399 2319 dbSNP
rs1425630590 2325 dbSNP
rs1305215832 2326 dbSNP
rs1343834145 2337 dbSNP
rs1404532449 2338 dbSNP
rs1012177406 2344 dbSNP
rs940206330 2352 dbSNP
rs1328259336 2361 dbSNP
rs910105937 2364 dbSNP
rs1479053754 2365 dbSNP
rs1359902585 2367 dbSNP
rs1224374691 2368 dbSNP
rs543300900 2371 dbSNP
rs1192912648 2383 dbSNP
rs959344057 2398 dbSNP
rs1205340833 2410 dbSNP
rs531429572 2410 dbSNP
rs982152403 2413 dbSNP
rs1000178110 2419 dbSNP
rs902802062 2433 dbSNP
rs1445655064 2443 dbSNP
rs1021038704 2447 dbSNP
rs1468667933 2450 dbSNP
rs1364075563 2454 dbSNP
rs78813740 2460 dbSNP
rs1009778741 2461 dbSNP
rs1044241655 2466 dbSNP
rs893652960 2468 dbSNP
rs1387235512 2470 dbSNP
rs946911189 2471 dbSNP
rs371053812 2473 dbSNP
rs1296810738 2477 dbSNP
rs1319896774 2478 dbSNP
rs1270770784 2482 dbSNP
rs1383385931 2491 dbSNP
rs564060797 2495 dbSNP
rs1038822755 2496 dbSNP
rs1358461832 2499 dbSNP
rs140154721 2500 dbSNP
rs1262066786 2507 dbSNP
rs1484621330 2513 dbSNP
rs868391440 2521 dbSNP
rs1243189754 2532 dbSNP
rs1462190418 2555 dbSNP
rs1185947692 2558 dbSNP
rs563614719 2563 dbSNP
rs983175318 2565 dbSNP
rs929212673 2572 dbSNP
rs920526847 2574 dbSNP
rs1423532817 2578 dbSNP
rs1363847 2581 dbSNP
rs1036120295 2586 dbSNP
rs1451761981 2591 dbSNP
rs182730922 2592 dbSNP
rs12173270 2602 dbSNP
rs990851045 2612 dbSNP
rs1454578375 2615 dbSNP
rs1334533455 2631 dbSNP
rs960811431 2635 dbSNP
rs754590708 2640 dbSNP
rs574644133 2641 dbSNP
rs1224086942 2645 dbSNP
rs1467305942 2651 dbSNP
rs1401617380 2658 dbSNP
rs1308739298 2659 dbSNP
rs1035427194 2661 dbSNP
rs1227377380 2668 dbSNP
rs999535438 2679 dbSNP
rs1263281183 2686 dbSNP
rs190529385 2687 dbSNP
rs1206125278 2693 dbSNP
rs1379692460 2709 dbSNP
rs1200031722 2710 dbSNP
rs186110678 2711 dbSNP
rs1178097733 2712 dbSNP
rs1253063874 2713 dbSNP
rs1252054699 2716 dbSNP
rs1191204578 2718 dbSNP
rs1048609988 2720 dbSNP
rs1011466932 2724 dbSNP
rs900654896 2734 dbSNP
rs1458744097 2735 dbSNP
rs35183828 2737 dbSNP
rs1158700505 2740 dbSNP
rs570905651 2741 dbSNP
rs182223068 2742 dbSNP
rs1039248885 2762 dbSNP
rs944430738 2767 dbSNP
rs1442800707 2769 dbSNP
rs926621154 2776 dbSNP
rs1234820108 2779 dbSNP
rs1408906082 2780 dbSNP
rs1283449316 2782 dbSNP
rs1346861736 2788 dbSNP
rs1370517117 2789 dbSNP
rs1301572853 2797 dbSNP
rs1277155280 2804 dbSNP
rs1449058459 2810 dbSNP
rs534152572 2811 dbSNP
rs982479878 2814 dbSNP
rs566885660 2815 dbSNP
rs1253520988 2816 dbSNP
rs1336373047 2823 dbSNP
rs1479824532 2833 dbSNP
rs1181749601 2836 dbSNP
rs913946192 2848 dbSNP
rs1481479701 2865 dbSNP
rs1047810651 2866 dbSNP
rs1197416499 2869 dbSNP
rs928997681 2877 dbSNP
rs190345363 2882 dbSNP
rs1408645390 2890 dbSNP
rs1352544198 2896 dbSNP
rs1428798513 2898 dbSNP
rs1303400281 2900 dbSNP
rs1405000739 2902 dbSNP
rs1037604782 2905 dbSNP
rs948666482 2908 dbSNP
rs1273782896 2915 dbSNP
rs1434561663 2915 dbSNP
rs1394071156 2918 dbSNP
rs915734475 2921 dbSNP
rs1007476147 2927 dbSNP
rs1232917361 2941 dbSNP
rs992656739 2946 dbSNP
rs758451647 2950 dbSNP
rs1292925707 2954 dbSNP
rs1490917307 2955 dbSNP
rs1219634268 2957 dbSNP
rs1030257380 2975 dbSNP
rs1475742061 2989 dbSNP
rs960739696 2991 dbSNP
rs928078584 2998 dbSNP
rs1258254813 3002 dbSNP
rs1211291013 3005 dbSNP
rs750417901 3022 dbSNP
rs1346940375 3028 dbSNP
rs1367181660 3031 dbSNP
rs1277950321 3033 dbSNP
rs1322392115 3043 dbSNP
rs1345285337 3043 dbSNP
rs1242530408 3046 dbSNP
rs1351677632 3050 dbSNP
rs1278973938 3053 dbSNP
rs765219154 3056 dbSNP
rs897506247 3060 dbSNP
rs1362039919 3068 dbSNP
rs187664187 3074 dbSNP
rs1314067127 3079 dbSNP
rs966753267 3080 dbSNP
rs1414529014 3082 dbSNP
rs1373977896 3083 dbSNP
rs1217988684 3101 dbSNP
rs368760679 3106 dbSNP
rs1036499889 3108 dbSNP
rs1246229869 3108 dbSNP
rs1005995593 3122 dbSNP
rs1471655056 3130 dbSNP
rs1162308742 3134 dbSNP
rs71623855 3137 dbSNP
rs1408215740 3141 dbSNP
rs535747311 3142 dbSNP
rs555084691 3154 dbSNP
rs1315673666 3156 dbSNP
rs1408288889 3160 dbSNP
rs71623854 3163 dbSNP
rs1048582707 3168 dbSNP
rs1022742925 3177 dbSNP
rs568407328 3185 dbSNP
rs1283852530 3186 dbSNP
rs964992795 3189 dbSNP
rs1225658763 3203 dbSNP
rs549934765 3204 dbSNP
rs1266378219 3217 dbSNP
rs1328571660 3219 dbSNP
rs1370094585 3229 dbSNP
rs926841745 3232 dbSNP
rs1244844399 3233 dbSNP
rs1440518471 3239 dbSNP
rs1186629751 3241 dbSNP
rs1233224586 3241 dbSNP
rs1470993251 3243 dbSNP
rs1485321502 3244 dbSNP
rs1410595495 3252 dbSNP
rs535515270 3256 dbSNP
rs1218537255 3266 dbSNP
rs757426838 3271 dbSNP
rs1177811780 3281 dbSNP
rs531433857 3286 dbSNP
rs369459481 3291 dbSNP
rs1017784523 3300 dbSNP
rs552003414 3301 dbSNP
rs890169454 3311 dbSNP
rs1047488791 3312 dbSNP
rs146123522 3314 dbSNP
rs898817508 3315 dbSNP
rs772511372 3321 dbSNP
rs748521666 3323 dbSNP
rs149603794 3324 dbSNP
rs1439275531 3325 dbSNP
rs935674846 3327 dbSNP
rs1179580964 3340 dbSNP
rs1250545634 3346 dbSNP
rs1480494456 3347 dbSNP
rs1201003797 3348 dbSNP
rs1375404766 3366 dbSNP
rs138227398 3378 dbSNP
rs1172500034 3386 dbSNP
rs1345380991 3390 dbSNP
rs1397661250 3396 dbSNP
rs1431963371 3399 dbSNP
rs1306435897 3403 dbSNP
rs1317258015 3405 dbSNP
rs760941573 3406 dbSNP
rs1405759031 3418 dbSNP
rs1285340911 3421 dbSNP
rs868213427 3428 dbSNP
rs1232452045 3433 dbSNP
rs1270640983 3437 dbSNP
rs1030634429 3440 dbSNP
rs1202707277 3442 dbSNP
rs1273608455 3444 dbSNP
rs1345778 3450 dbSNP
rs1224233904 3451 dbSNP
rs961998067 3457 dbSNP
rs1432023565 3458 dbSNP
rs1474806535 3459 dbSNP
rs1014622978 3466 dbSNP
rs1006379042 3471 dbSNP
rs11553156 3474 dbSNP
rs1167155633 3476 dbSNP
rs1451846019 3476 dbSNP
rs967226222 3482 dbSNP
rs1425604690 3489 dbSNP
rs915238800 3490 dbSNP
rs1388679788 3491 dbSNP
rs1386237915 3493 dbSNP
rs544767345 3499 dbSNP
rs1318932688 3501 dbSNP
rs1475642347 3501 dbSNP
rs1226057393 3512 dbSNP
rs989520122 3516 dbSNP
rs1034067535 3523 dbSNP
rs1213849906 3526 dbSNP
rs1002297042 3539 dbSNP
rs1263256397 3550 dbSNP
rs1487891091 3556 dbSNP
rs964922209 3558 dbSNP
rs1453573686 3560 dbSNP
rs1205246396 3582 dbSNP
rs905387801 3585 dbSNP
rs1466682518 3590 dbSNP
rs1047067420 3597 dbSNP
rs577386081 3598 dbSNP
rs1017879760 3601 dbSNP
rs892454266 3613 dbSNP
rs1052487341 3615 dbSNP
rs1457570391 3620 dbSNP
rs936658816 3630 dbSNP
rs1390912391 3632 dbSNP
rs150842947 3633 dbSNP
rs986228158 3634 dbSNP
rs1383276949 3642 dbSNP
rs954921358 3659 dbSNP
rs1026926865 3666 dbSNP
rs116733503 3667 dbSNP
rs1361634674 3670 dbSNP
rs1239295836 3671 dbSNP
rs1262043280 3677 dbSNP
rs2329351 3680 dbSNP
rs1037287838 3688 dbSNP
rs57395904 3690 dbSNP
rs984385028 3697 dbSNP
rs536682218 3703 dbSNP
rs141428544 3704 dbSNP
rs549829744 3707 dbSNP
rs774859775 3712 dbSNP
rs1414286976 3715 dbSNP
rs1056994368 3719 dbSNP
rs1172507349 3720 dbSNP
rs1406787156 3727 dbSNP
rs938622503 3742 dbSNP
rs903003533 3749 dbSNP
rs1467501468 3751 dbSNP
rs775527621 3751 dbSNP
rs1300922209 3763 dbSNP
rs1378161846 3777 dbSNP
rs1001263379 3781 dbSNP
rs905345730 3784 dbSNP
rs1348107564 3786 dbSNP
rs1227198485 3797 dbSNP
rs1041976899 3802 dbSNP
rs1025174191 3806 dbSNP
rs771367289 3807 dbSNP
rs945479539 3809 dbSNP
rs915314614 3823 dbSNP
rs1455703316 3825 dbSNP
rs1253934523 3848 dbSNP
rs989449303 3862 dbSNP
rs943366992 3865 dbSNP
rs137963090 3866 dbSNP
rs747661287 3866 dbSNP
rs903874744 3874 dbSNP
rs1260098187 3875 dbSNP
rs1050484190 3878 dbSNP
rs932085700 3884 dbSNP
rs776199598 3894 dbSNP
rs1271249699 3899 dbSNP
rs955163420 3904 dbSNP
rs1026479455 3914 dbSNP
rs972641899 3929 dbSNP
rs1180681785 3930 dbSNP
rs1372720204 3931 dbSNP
rs373713028 3934 dbSNP
rs1303744901 3941 dbSNP
rs139018013 3949 dbSNP
rs768250782 3955 dbSNP
rs1015979876 3968 dbSNP
rs1012512778 3985 dbSNP
rs907754521 4001 dbSNP
rs1057631 4003 dbSNP
rs1299416630 4012 dbSNP
rs1221441793 4018 dbSNP
rs1299747387 4021 dbSNP
rs1311998317 4040 dbSNP
rs1035346442 4048 dbSNP
rs1270188445 4052 dbSNP
rs1277184309 4055 dbSNP
rs552202661 4065 dbSNP
rs1353876322 4074 dbSNP
rs951697079 4074 dbSNP
rs1168048449 4075 dbSNP
rs1269700652 4084 dbSNP
rs1034005280 4106 dbSNP
rs370456349 4107 dbSNP
rs146238911 4111 dbSNP
rs1395892377 4119 dbSNP
rs971209105 4141 dbSNP
rs903139760 4147 dbSNP
rs1388080101 4151 dbSNP
rs1428785636 4156 dbSNP
rs1303312857 4158 dbSNP
rs1351133068 4166 dbSNP
rs1452841206 4169 dbSNP
rs142278999 4170 dbSNP
rs559855582 4177 dbSNP
rs201666272 4178 dbSNP
rs1229769713 4180 dbSNP
rs1367567179 4180 dbSNP
rs1300348163 4184 dbSNP
rs1340393501 4189 dbSNP
rs1177866214 4190 dbSNP
rs1041512918 4193 dbSNP
rs1024478431 4206 dbSNP
rs1013722354 4219 dbSNP
rs188275272 4222 dbSNP
rs1031235728 4226 dbSNP
rs1246185050 4227 dbSNP
rs550946503 4229 dbSNP
rs1349111503 4231 dbSNP
rs1280095346 4237 dbSNP
rs1245971547 4240 dbSNP
rs1448589770 4241 dbSNP
rs538782717 4252 dbSNP
rs903845384 4256 dbSNP
rs1345301772 4279 dbSNP
rs544592395 4280 dbSNP
rs1436469559 4306 dbSNP
rs996262257 4325 dbSNP
rs1363490422 4339 dbSNP
rs1434769985 4342 dbSNP
rs1285117989 4344 dbSNP
rs80220142 4352 dbSNP
rs75862121 4353 dbSNP
rs1358795710 4354 dbSNP
rs901891515 4354 dbSNP
rs183847829 4357 dbSNP
rs1329863388 4359 dbSNP
rs1308448119 4362 dbSNP
rs202101821 4362 dbSNP
rs780055150 4385 dbSNP
rs1464299135 4390 dbSNP
rs1208801728 4391 dbSNP
rs756194753 4393 dbSNP
rs1471644206 4407 dbSNP
rs568412772 4412 dbSNP
rs933546659 4416 dbSNP
rs907722365 4428 dbSNP
rs540871520 4435 dbSNP
rs1162037003 4442 dbSNP
rs919508454 4445 dbSNP
rs972229694 4450 dbSNP
rs1457151212 4459 dbSNP
rs1416562633 4461 dbSNP
rs1289930667 4465 dbSNP
rs1375791266 4482 dbSNP
rs756327122 4491 dbSNP
rs1335347572 4492 dbSNP
rs767479239 4497 dbSNP
rs930595716 4500 dbSNP
rs752990764 4504 dbSNP
rs963898481 4507 dbSNP
rs979697482 4509 dbSNP
rs1351209398 4516 dbSNP
rs1230261686 4518 dbSNP
rs767674550 4523 dbSNP
rs1433028811 4541 dbSNP
rs1016410307 4556 dbSNP
rs1286499461 4558 dbSNP
rs191762898 4559 dbSNP
rs1200958461 4562 dbSNP
rs1280478908 4567 dbSNP
rs1159918501 4569 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000337702.4 | 3UTR | CAUAUAAAAACUAAAAUGGCAGGAUUAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE38974 Chronic obstructive pulmonary disease -0.515 4.2e-3 -0.416 1.9e-2 25 Click to see details
GSE28544 Breast cancer 0.512 5.3e-3 0.595 1.1e-3 24 Click to see details
GSE28260 Renal cortex and medulla 0.561 2.3e-2 0.604 1.4e-2 13 Click to see details
GSE38226 Liver fibrosis -0.072 3.8e-1 -0.248 1.4e-1 21 Click to see details
GSE26953 Aortic valvular endothelial cells -0.046 4.2e-1 -0.010 4.8e-1 24 Click to see details
GSE42095 Differentiated embryonic stem cells -0.025 4.5e-1 0.026 4.5e-1 23 Click to see details
GSE32688 Pancreatic cancer -0.018 4.6e-1 -0.089 3.1e-1 32 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
LUAD -0.803 0.03 -0.829 0.02 6 Click to see details
STAD -0.514 0.05 -0.491 0.06 11 Click to see details
HNSC -0.376 0.09 -0.266 0.18 14 Click to see details
KIRC 0.733 0.13 0.800 0.1 4 Click to see details
CHOL -0.48 0.17 -0.714 0.06 6 Click to see details
LUSC -0.21 0.21 -0.115 0.33 17 Click to see details
KIRP 0.205 0.3 0.000 0.5 9 Click to see details
BLCA 0.173 0.37 0.086 0.44 6 Click to see details
BRCA -0.086 0.39 -0.027 0.47 13 Click to see details
PAAD 0.337 0.39 0.500 0.33 3 Click to see details
LIHC 0.029 0.45 0.026 0.46 21 Click to see details
THCA 0.017 0.47 0.074 0.36 25 Click to see details
UCEC 0.033 0.48 0.029 0.48 6 Click to see details
KICH 0.02 0.49 0.400 0.25 5 Click to see details
KICH 0.02 0.49 0.400 0.25 5 Click to see details
KICH 0.02 0.49 0.400 0.25 5 Click to see details
KICH 0.02 0.49 0.400 0.25 5 Click to see details
46 hsa-miR-1284 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035831 PRRC2B proline rich coiled-coil 2B 1 1
MIRT079621 DNAJB4 DnaJ heat shock protein family (Hsp40) member B4 2 2
MIRT149901 LDLR low density lipoprotein receptor 2 2
MIRT182786 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT188827 TMTC3 transmembrane and tetratricopeptide repeat containing 3 2 2
MIRT198187 EIF4A1 eukaryotic translation initiation factor 4A1 3 1
MIRT245472 ARID5B AT-rich interaction domain 5B 2 2
MIRT252245 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 6
MIRT269363 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT320406 HOXA9 homeobox A9 2 4
MIRT474722 KIF13A kinesin family member 13A 2 6
MIRT497926 BTG1 BTG anti-proliferation factor 1 2 2
MIRT504264 C1orf147 chromosome 1 open reading frame 147 2 4
MIRT520449 TSPAN2 tetraspanin 2 2 4
MIRT524092 DNAJB14 DnaJ heat shock protein family (Hsp40) member B14 2 4
MIRT528639 SENP6 SUMO1/sentrin specific peptidase 6 2 2
MIRT537385 FGF2 fibroblast growth factor 2 2 2
MIRT538902 BRI3BP BRI3 binding protein 2 2
MIRT542095 KCNK10 potassium two pore domain channel subfamily K member 10 2 6
MIRT543976 PRR23A proline rich 23A 2 2
MIRT549625 ADCYAP1 adenylate cyclase activating polypeptide 1 2 4
MIRT554298 SIPA1L2 signal induced proliferation associated 1 like 2 2 2
MIRT554872 RCAN2 regulator of calcineurin 2 2 2
MIRT567623 FAM210A family with sequence similarity 210 member A 2 2
MIRT571137 TTC33 tetratricopeptide repeat domain 33 2 2
MIRT576361 Pxdn peroxidasin 2 2
MIRT611088 PHF8 PHD finger protein 8 2 2
MIRT612380 TCTE1 t-complex-associated-testis-expressed 1 2 4
MIRT613725 MTPN myotrophin 2 2
MIRT614627 YAE1D1 Yae1 domain containing 1 2 2
MIRT615818 KIAA1549L KIAA1549 like 2 2
MIRT620949 TBCK TBC1 domain containing kinase 2 2
MIRT622339 SCN4A sodium voltage-gated channel alpha subunit 4 2 2
MIRT623219 MTA3 metastasis associated 1 family member 3 2 4
MIRT628932 SLC1A4 solute carrier family 1 member 4 2 2
MIRT632121 FKBP9 FK506 binding protein 9 2 2
MIRT635877 COX17 COX17, cytochrome c oxidase copper chaperone 2 2
MIRT636485 IKBKG inhibitor of nuclear factor kappa B kinase subunit gamma 2 2
MIRT653097 SRSF7 serine and arginine rich splicing factor 7 2 2
MIRT655048 PKN2 protein kinase N2 2 2
MIRT686946 SFT2D3 SFT2 domain containing 3 2 2
MIRT692724 INPP5B inositol polyphosphate-5-phosphatase B 2 2
MIRT697282 ZNF800 zinc finger protein 800 2 2
MIRT698995 SPAG9 sperm associated antigen 9 2 2
MIRT704462 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT715163 FIG4 FIG4 phosphoinositide 5-phosphatase 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-1284 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-1284 Sorafenib 216239 NSC747971 approved sensitive High Hepatocellular Carcinoma tissue
hsa-miR-1284 Vincristine 5978 approved sensitive Low Gastric Cancer cell line (SGC-7901)
hsa-miR-1284 Cisplatin 5460033 NSC119875 approved sensitive Low Cervical Cancer cell line (HeLa, SiHa)
hsa-miR-1284 Cisplatin + Decitabine sensitive High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-1284 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-1284 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-1284 Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-1284 Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1284 Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-1284 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-1284 Vemurafenib 42611257 NSC761431 approved resistant cell line (LM16)
hsa-miR-1284 Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM17)
hsa-miR-1284 Vemurafenib 42611257 NSC761431 approved resistant cell line (LM47)
hsa-miR-1284 Vemurafenib 42611257 NSC761431 approved resistant cell line (LM36)
hsa-miR-1284 Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM43)
hsa-miR-1284 Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM11)
hsa-miR-1284 Tamoxifen 2733525 NSC180973 approved sensitive cell line (LCC2)
hsa-miR-1284 4-Hydroxytamoxifen+Tamoxifen resistant cell line (LY2)
hsa-miR-1284 Pegylated interferon alpha+Ribavirin sensitive tissue (chronic hepatitis C)
hsa-miR-1284 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-1284 Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-1284 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-1284 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide sensitive cell line (Bads-200)

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