miRTarBase - #MIRT571228


—
pre-miRNA Information
pre-miRNA hsa-mir-3171   
Genomic Coordinates chr14: 27633205 - 27633278
Description Homo sapiens miR-3171 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3171
Sequence 10| AGAUGUAUGGAAUCUGUAUAUAUC |33
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1317334268 4 dbSNP
rs1412633952 16 dbSNP
rs967845497 17 dbSNP
rs1278913737 19 dbSNP
rs1348410638 24 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SYT9   
Synonyms -
Description synaptotagmin 9
Transcript NM_175733   
Expression
Putative miRNA Targets on SYT9
3'UTR of SYT9
(miRNA target sites are highlighted)		 
>SYT9|NM_175733|3'UTR
   1 CCATGGGTAAGAGGACTGCTTGTGCCAAGGACAAAATAGGACAACCATCTCACAAAGATCTTAAGTAACTTTTTCCATCC
  81 AGCAACATCCAGACGATTTCAGTGACCAAATGCTCAGCTGTAACCACAGCACTAACTGGCCTTCTTTCCAGATTGGGTTT
 161 GGTGAACCTGAATGGTCCAGCCACCTTCTGCAGGTGGCCCAAGGTGATGTGCTGCAGGGAAGCATGTCTCTCATGCCAAG
 241 AACCAAGATCGGACTATGAACAAAAACAAATGATAGATATAGTGACAGTACCAAGAGTACCAGGACTCAATGTTTCATAT
 321 GAAGCCCTTGGTGATGAGGACATAGCATCTGCCCTGGAAATCGTTATTCCAACATAATATTATTTTCTAGAATGCCCTGG
 401 AAGGACAGAATATTTAAAAATATATCCAGGTGCTAAATAGGCAGCAGATCTCAATTCACACATGACTACCTTTGAGCTAA
 481 TGACTGTCTCCAGAAAATAACTGTGCCCCAAGAAGTGCTCCAGATTTGCAAGGAATAGCCCCAAGAGAATACCAAGACAA
 561 GCAGGCTGTTCCCTGGAAAAAATCTAATGCAAGGAGGGCTAGTTCACAGCAAATTCACTGCCTCCTCCCATGCACGTGGT
 641 AGAGAGTACCAGTATCAACATGGCCCTGTTTTCTGCTAAAACCAGATTTTGAGGAATCAGAGACCCCCAACACTACTCAC
 721 TCAGTAGCTAGCAGCCCCTTCCTTTCAACTGGGAGTGTTATTAGAATGAAAAGTAATTAGTTAGAAGGGCATACATCTCA
 801 GTGGCATGAGCATTGTGGAATATCCTTTCCTAGGCACATTCGTCCACTAAGGGAACAGCCTCAGAAACTGGTACAGCAAT
 881 GGGTGAGATGAGATCATGGAGAGAGAACACAGCCATCCCCTATAGAAAGGCACAGCTTTTGGGCTTCTCTGGCCTGAATG
 961 CCTTCTGGGGTATTTCCATATGCAACAGCCCAGAGTCATAGCCTTGGGCAACCACACATAGAGGTTTCCTTCTCACTTCA
1041 GACACATACATCACTTTCACACCACTTGGGGATGGAAATACCTACAAGAGTGAAGGTCAAGGGCCCTCCCCAGGCATCTC
1121 ATTCATTACTCAGCTTCCTTCCTGACCAAGTCTGCCAACCAATGGCCAGCTATGCGCCTCATCCTCATTGCTTCTGCCTC
1201 CACGTAAATGAAACCAAAGGCCTCAGCATATCCTGGGAGGACTGGGGGCTGTTACCTAATGGTCCTCTCTGTCCCATTAT
1281 AGGTGCAAGGCACCCCATCCACACATTTGCACCACTACTCCAAGATAGTATTTTTCTTTTCACACAATCTCTTTACAGCA
1361 GAATCCAGAGTTGGATTGTAGTTTACCTTCCTGGAAAGCTCATTATCTCTGTTTGAATTAACATTTCAGCATGGAACTAA
1441 CTGGGCGGAGGAAGGATCGTTATACGTCTTCAGAAAGTTCTCATTGCCCCAGCTGCCTAGTACTATACAAGAAGCTCTAC
1521 TTTGATGGCAGATCTAAGAAGGCTATAGGCCTTTGTTTGTAGGAAGCAGTGTCATTACATTCAAGCTTCACTTCTCTGAT
1601 TGGCTTCCAACCACTGGGATTCAAAGAGAATCCAAGGTTCTGCCTATGTCTGATGACATAAGGAAAACTTGGCTTCCTCT
1681 GCTCAAGGTTCCCCTCTGCTCATCCCTCCTCATTCAGACATCCTCCACCATACCAGTGTTTAGAAGCAAAACATGAAGGG
1761 CTAGCGCCACCAGGATAGTTAGCAGAAATATTGTCTGTAAAGCTAGGCAGATGAGCCCAGAAGAATGGTCCCAGAGAAAG
1841 CAGACTGGCTCCAATAGATATCAGGCAGCAATCCCAATAAATTCTGACATGTCCTTGGCAATGGAAGCCTGGGTTGGAGA
1921 TCCTGAGGCAGCTGTGCCTACTGTTCCCCACCTCAGAAGCTTCCTGCCCAGAGAGCCAGCAGCCTTGGGATACTAATGAG
2001 GATGCAACTGGCTTATTGGTATGAAATAGAAGGTGGCTTTGTAGGGGCAAGCAGGCAAAGAGTACTATCCACATGGCAGG
2081 CAGGTGGCTTTGTGTCTGGAAAGCTTTGCCTAGCCAGTACAGCTGTGAGCAGAGGCTGGTTATAAATTTGAACTCCCTCA
2161 GCCCATTTGCAACTCTGCCTCTGTTCTCTTGCATTCTGTTTGGTTGCCCTTTAGTTTCCTAGTAAATGCTCCTTTTGAAA
2241 AACTC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuauauAUGUCUAAG-GUAUGUAGa 5'
                | ||||  | |||||||| 
Target 5' tctcacTTCAGA--CACATACATCa 3'
 1031 - 1053 154.00 -13.00
2 
miRNA  3' cuAUAUAUGUCUAAGGUAUGUAGa 5'
            ||  || | |   |||||||| 
Target 5' atTAGTTAGA-AGGGCATACATCt 3'
 776 - 798 149.00 -11.70
3 
miRNA  3' cuaUAUAUGUCUAAGGUAUGUAGa 5'
             |||| :| |    |||:||| 
Target 5' agaATATTTAAA---AATATATCc 3'
 407 - 427 134.00 -5.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30188649 27 COSMIC
COSN30542769 45 COSMIC
COSN30193029 48 COSMIC
COSN8536621 50 COSMIC
COSN30466185 52 COSMIC
COSN24303990 77 COSMIC
COSN30467998 80 COSMIC
COSN26643170 95 COSMIC
COSN23018945 101 COSMIC
COSN24384330 105 COSMIC
COSN31578217 130 COSMIC
COSN32058332 142 COSMIC
COSN31480885 179 COSMIC
COSN30093578 222 COSMIC
COSN31544150 429 COSMIC
COSN31595901 450 COSMIC
COSN30543471 622 COSMIC
COSN27757609 837 COSMIC
COSN30289970 888 COSMIC
COSN31960593 1085 COSMIC
COSN31544852 1249 COSMIC
COSN2486421 1304 COSMIC
COSN23883840 1627 COSMIC
COSN31489081 1744 COSMIC
COSN31583316 1792 COSMIC
COSN31483182 1821 COSMIC
COSN30538305 1842 COSMIC
COSN30538178 1883 COSMIC
COSN25162701 1915 COSMIC
COSN20744655 2146 COSMIC
COSN20107918 2180 COSMIC
COSN5709433 2221 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs750780940 5 dbSNP
rs1435870546 6 dbSNP
rs1312214720 8 dbSNP
rs199948477 10 dbSNP
rs767134472 12 dbSNP
rs1291542052 13 dbSNP
rs1435770610 15 dbSNP
rs372600381 18 dbSNP
rs201342081 21 dbSNP
rs1458984587 25 dbSNP
rs1181690356 26 dbSNP
rs777321443 30 dbSNP
rs749184306 34 dbSNP
rs1163947068 36 dbSNP
rs1416196466 37 dbSNP
rs757174936 43 dbSNP
rs1328591415 46 dbSNP
rs1401503413 48 dbSNP
rs1255116431 49 dbSNP
rs1187038262 61 dbSNP
rs538854351 65 dbSNP
rs1485877006 68 dbSNP
rs1280569621 70 dbSNP
rs35083833 70 dbSNP
rs1203340111 73 dbSNP
rs1349995158 78 dbSNP
rs972009151 83 dbSNP
rs929951975 95 dbSNP
rs146284651 96 dbSNP
rs920390040 101 dbSNP
rs1450839982 108 dbSNP
rs1293058758 117 dbSNP
rs182433253 118 dbSNP
rs891414396 119 dbSNP
rs532392237 120 dbSNP
rs944282488 126 dbSNP
rs1316798635 129 dbSNP
rs769115116 131 dbSNP
rs1383582064 132 dbSNP
rs113506062 133 dbSNP
rs4586135 145 dbSNP
rs1300174998 146 dbSNP
rs577338388 151 dbSNP
rs1415121088 153 dbSNP
rs1339805242 154 dbSNP
rs750844067 161 dbSNP
rs761069607 165 dbSNP
rs1446407410 167 dbSNP
rs1262498330 189 dbSNP
rs552575810 194 dbSNP
rs902850531 197 dbSNP
rs893284406 203 dbSNP
rs997050804 205 dbSNP
rs186711603 215 dbSNP
rs1444021387 219 dbSNP
rs114650330 222 dbSNP
rs1008286951 231 dbSNP
rs1323139948 235 dbSNP
rs1035341135 239 dbSNP
rs542556852 250 dbSNP
rs959968662 251 dbSNP
rs991380345 252 dbSNP
rs1405634694 255 dbSNP
rs1022816128 257 dbSNP
rs148453860 262 dbSNP
rs779332916 272 dbSNP
rs1415665772 289 dbSNP
rs972384005 291 dbSNP
rs1475041989 295 dbSNP
rs1387981344 296 dbSNP
rs1027612811 298 dbSNP
rs1474618066 303 dbSNP
rs1252487934 305 dbSNP
rs4344466 311 dbSNP
rs754990831 324 dbSNP
rs1271310563 327 dbSNP
rs778983949 331 dbSNP
rs974563990 337 dbSNP
rs920060594 340 dbSNP
rs752874842 342 dbSNP
rs1340513493 352 dbSNP
rs1426347246 363 dbSNP
rs79278446 364 dbSNP
rs949758181 370 dbSNP
rs1324690000 374 dbSNP
rs1436730535 380 dbSNP
rs1351325392 386 dbSNP
rs142590497 390 dbSNP
rs924236229 395 dbSNP
rs1405428539 399 dbSNP
rs934375268 401 dbSNP
rs1170371625 407 dbSNP
rs1452552420 409 dbSNP
rs1435997329 411 dbSNP
rs150986945 415 dbSNP
rs1324958229 431 dbSNP
rs1039906080 445 dbSNP
rs192181469 454 dbSNP
rs548400891 456 dbSNP
rs1479049333 460 dbSNP
rs947540912 462 dbSNP
rs1231334360 463 dbSNP
rs1438707801 471 dbSNP
rs932920506 473 dbSNP
rs1043608876 478 dbSNP
rs1209327287 494 dbSNP
rs1347863149 500 dbSNP
rs774650669 503 dbSNP
rs902960962 505 dbSNP
rs1219239415 507 dbSNP
rs139499379 510 dbSNP
rs1277359885 511 dbSNP
rs185711660 517 dbSNP
rs1370910118 524 dbSNP
rs780942848 530 dbSNP
rs1432773798 535 dbSNP
rs1210106419 538 dbSNP
rs762411474 539 dbSNP
rs1416193846 540 dbSNP
rs1405919330 548 dbSNP
rs1176798822 569 dbSNP
rs1473068918 572 dbSNP
rs1446022820 573 dbSNP
rs895452843 589 dbSNP
rs995544860 600 dbSNP
rs1027971009 614 dbSNP
rs1012845210 631 dbSNP
rs7940200 636 dbSNP
rs1212890605 637 dbSNP
rs991421450 641 dbSNP
rs963620461 645 dbSNP
rs750405997 648 dbSNP
rs1022763800 650 dbSNP
rs1247593266 651 dbSNP
rs1222831870 653 dbSNP
rs188768888 655 dbSNP
rs971225753 656 dbSNP
rs1412634165 659 dbSNP
rs1026555472 661 dbSNP
rs1303315047 662 dbSNP
rs1450170871 669 dbSNP
rs981177749 671 dbSNP
rs1158549607 672 dbSNP
rs1414376215 677 dbSNP
rs1457960730 677 dbSNP
rs1163070474 682 dbSNP
rs74051638 684 dbSNP
rs982807916 686 dbSNP
rs756001599 697 dbSNP
rs1457817393 698 dbSNP
rs1161404603 704 dbSNP
rs1207631987 705 dbSNP
rs1329244409 709 dbSNP
rs1382923028 710 dbSNP
rs1231104820 712 dbSNP
rs1333836447 724 dbSNP
rs1400274062 728 dbSNP
rs965317202 732 dbSNP
rs1397700407 749 dbSNP
rs989806143 755 dbSNP
rs1332594523 756 dbSNP
rs1435829913 763 dbSNP
rs1390955855 764 dbSNP
rs975639594 778 dbSNP
rs921570731 790 dbSNP
rs537162714 792 dbSNP
rs1369389895 795 dbSNP
rs1402914322 796 dbSNP
rs1167428093 800 dbSNP
rs1427258378 805 dbSNP
rs1419347978 809 dbSNP
rs749198900 818 dbSNP
rs1350978187 822 dbSNP
rs924749350 835 dbSNP
rs934410131 838 dbSNP
rs10732509 842 dbSNP
rs1487986614 843 dbSNP
rs1265805829 858 dbSNP
rs1246627011 865 dbSNP
rs1349341984 875 dbSNP
rs1305564152 880 dbSNP
rs895485409 893 dbSNP
rs10732510 897 dbSNP
rs1044443979 898 dbSNP
rs899113738 901 dbSNP
rs747774636 906 dbSNP
rs771904281 909 dbSNP
rs891286905 921 dbSNP
rs1291667697 923 dbSNP
rs565965368 924 dbSNP
rs1460738253 930 dbSNP
rs1004263068 962 dbSNP
rs550689125 963 dbSNP
rs1019617830 967 dbSNP
rs1169744730 969 dbSNP
rs533642859 971 dbSNP
rs1391465144 973 dbSNP
rs1191279677 974 dbSNP
rs1037505627 979 dbSNP
rs553880435 980 dbSNP
rs1479513695 986 dbSNP
rs371314520 999 dbSNP
rs761030268 1000 dbSNP
rs1362076280 1012 dbSNP
rs1344306375 1013 dbSNP
rs895150400 1019 dbSNP
rs570563942 1020 dbSNP
rs1232540272 1023 dbSNP
rs1303619206 1025 dbSNP
rs979394219 1031 dbSNP
rs193197245 1035 dbSNP
rs924809549 1038 dbSNP
rs1389926570 1051 dbSNP
rs1373022220 1055 dbSNP
rs1309077903 1062 dbSNP
rs539044962 1063 dbSNP
rs934774144 1066 dbSNP
rs992992557 1070 dbSNP
rs1374103879 1072 dbSNP
rs536253281 1076 dbSNP
rs1173576291 1081 dbSNP
rs556465294 1091 dbSNP
rs184441603 1092 dbSNP
rs1044093130 1097 dbSNP
rs1416990783 1105 dbSNP
rs1250785586 1107 dbSNP
rs766663170 1114 dbSNP
rs1031937672 1116 dbSNP
rs930593100 1130 dbSNP
rs1278032622 1138 dbSNP
rs1048072440 1144 dbSNP
rs1345766180 1152 dbSNP
rs1411518376 1154 dbSNP
rs1257881617 1158 dbSNP
rs1304853473 1163 dbSNP
rs1328822168 1164 dbSNP
rs1411999589 1165 dbSNP
rs1353978966 1166 dbSNP
rs1312761734 1168 dbSNP
rs1397165238 1170 dbSNP
rs545351963 1171 dbSNP
rs1334652466 1173 dbSNP
rs990309452 1174 dbSNP
rs147765986 1176 dbSNP
rs1008725020 1177 dbSNP
rs912839722 1184 dbSNP
rs1018726319 1198 dbSNP
rs1442989575 1200 dbSNP
rs369039561 1204 dbSNP
rs1328597857 1205 dbSNP
rs997314383 1211 dbSNP
rs1291413371 1216 dbSNP
rs1028337081 1221 dbSNP
rs1230495521 1223 dbSNP
rs1333112172 1227 dbSNP
rs1284024605 1258 dbSNP
rs753506745 1260 dbSNP
rs931374308 1261 dbSNP
rs1316855039 1263 dbSNP
rs1342852638 1263 dbSNP
rs969089140 1270 dbSNP
rs979037603 1275 dbSNP
rs1415372993 1280 dbSNP
rs561440683 1281 dbSNP
rs530009416 1283 dbSNP
rs765268703 1284 dbSNP
rs1162500760 1285 dbSNP
rs752823547 1286 dbSNP
rs1370058453 1287 dbSNP
rs377241119 1291 dbSNP
rs895138923 1293 dbSNP
rs1464467191 1298 dbSNP
rs1248766554 1303 dbSNP
rs754421282 1305 dbSNP
rs1467354414 1311 dbSNP
rs1289614182 1325 dbSNP
rs993023665 1327 dbSNP
rs917404829 1345 dbSNP
rs1163189186 1346 dbSNP
rs1390541433 1347 dbSNP
rs1228357997 1348 dbSNP
rs543821003 1350 dbSNP
rs1363794288 1352 dbSNP
rs1297761039 1358 dbSNP
rs1431465677 1364 dbSNP
rs948470805 1368 dbSNP
rs1347684692 1374 dbSNP
rs563368889 1377 dbSNP
rs920283337 1398 dbSNP
rs930265751 1399 dbSNP
rs1395753525 1400 dbSNP
rs1396561839 1408 dbSNP
rs907092918 1408 dbSNP
rs4408288 1410 dbSNP
rs1190675943 1411 dbSNP
rs552493361 1412 dbSNP
rs1246289188 1418 dbSNP
rs1222620414 1423 dbSNP
rs751736706 1429 dbSNP
rs1379949276 1444 dbSNP
rs565932776 1447 dbSNP
rs1031465458 1454 dbSNP
rs1205054986 1456 dbSNP
rs114654918 1457 dbSNP
rs141164216 1459 dbSNP
rs1281553755 1460 dbSNP
rs1011317714 1463 dbSNP
rs555243494 1466 dbSNP
rs985120864 1467 dbSNP
rs1306018034 1475 dbSNP
rs1343315417 1485 dbSNP
rs535846369 1492 dbSNP
rs1249997495 1496 dbSNP
rs556175956 1501 dbSNP
rs755882926 1503 dbSNP
rs779738090 1505 dbSNP
rs879447398 1509 dbSNP
rs918728980 1509 dbSNP
rs904602333 1510 dbSNP
rs1231522630 1520 dbSNP
rs1000637692 1523 dbSNP
rs1244979806 1527 dbSNP
rs1181823672 1531 dbSNP
rs1483592537 1532 dbSNP
rs931505679 1543 dbSNP
rs1183215973 1546 dbSNP
rs569704617 1551 dbSNP
rs1391059887 1552 dbSNP
rs1277361037 1556 dbSNP
rs1048469155 1557 dbSNP
rs1168004113 1568 dbSNP
rs1031662809 1569 dbSNP
rs956300874 1574 dbSNP
rs916689504 1575 dbSNP
rs993058146 1596 dbSNP
rs1466429224 1602 dbSNP
rs1024494032 1608 dbSNP
rs1174261890 1609 dbSNP
rs948021381 1615 dbSNP
rs1445789987 1617 dbSNP
rs1358633190 1623 dbSNP
rs1176960414 1626 dbSNP
rs1416242211 1636 dbSNP
rs970599227 1648 dbSNP
rs1451365494 1653 dbSNP
rs1320777674 1655 dbSNP
rs1366855758 1660 dbSNP
rs1380199902 1661 dbSNP
rs1414702709 1665 dbSNP
rs538929850 1675 dbSNP
rs920378511 1684 dbSNP
rs1053482420 1685 dbSNP
rs951822093 1689 dbSNP
rs891624190 1692 dbSNP
rs188954568 1697 dbSNP
rs1265799398 1705 dbSNP
rs907523719 1706 dbSNP
rs1265612279 1712 dbSNP
rs1290039215 1713 dbSNP
rs1226525616 1721 dbSNP
rs1378261621 1723 dbSNP
rs752528329 1725 dbSNP
rs944637814 1731 dbSNP
rs1040234501 1735 dbSNP
rs921770380 1736 dbSNP
rs1450235756 1737 dbSNP
rs112015255 1742 dbSNP
rs1043556327 1748 dbSNP
rs1320102189 1753 dbSNP
rs755010005 1759 dbSNP
rs1248751705 1762 dbSNP
rs1414632744 1765 dbSNP
rs866444045 1766 dbSNP
rs1000265869 1767 dbSNP
rs1006612783 1777 dbSNP
rs1415087546 1785 dbSNP
rs4351800 1789 dbSNP
rs1260709219 1792 dbSNP
rs891773613 1798 dbSNP
rs965424575 1806 dbSNP
rs747723259 1808 dbSNP
rs1014525576 1819 dbSNP
rs1207692833 1830 dbSNP
rs1465117782 1841 dbSNP
rs1269628930 1855 dbSNP
rs1024525147 1856 dbSNP
rs1201495586 1857 dbSNP
rs970333444 1863 dbSNP
rs1427165742 1865 dbSNP
rs1002145203 1878 dbSNP
rs1469249385 1885 dbSNP
rs1363088609 1886 dbSNP
rs1297034439 1887 dbSNP
rs79676614 1888 dbSNP
rs1391021976 1909 dbSNP
rs952891126 1913 dbSNP
rs984722717 1920 dbSNP
rs951904343 1923 dbSNP
rs916770365 1935 dbSNP
rs1361688707 1939 dbSNP
rs1428442117 1942 dbSNP
rs1387775137 1944 dbSNP
rs1187464835 1945 dbSNP
rs7119034 1951 dbSNP
rs982202639 1953 dbSNP
rs771709975 1957 dbSNP
rs965643688 1960 dbSNP
rs1488016308 1961 dbSNP
rs1285721993 1967 dbSNP
rs1265762112 1970 dbSNP
rs1344124346 1971 dbSNP
rs145890233 1972 dbSNP
rs921885159 1974 dbSNP
rs931903027 1976 dbSNP
rs1053023101 1981 dbSNP
rs1043973929 1985 dbSNP
rs1367412928 2012 dbSNP
rs543544327 2017 dbSNP
rs1386384340 2018 dbSNP
rs1260429877 2020 dbSNP
rs181319975 2021 dbSNP
rs1201381991 2033 dbSNP
rs1042847252 2039 dbSNP
rs1374257020 2040 dbSNP
rs936098127 2044 dbSNP
rs111267189 2047 dbSNP
rs1267798255 2048 dbSNP
rs1182828585 2055 dbSNP
rs1481942578 2056 dbSNP
rs891806474 2061 dbSNP
rs1019356863 2068 dbSNP
rs532419352 2069 dbSNP
rs546041495 2074 dbSNP
rs1341596739 2075 dbSNP
rs1254274660 2095 dbSNP
rs1232820886 2105 dbSNP
rs1312920681 2109 dbSNP
rs1180413701 2111 dbSNP
rs1285422466 2112 dbSNP
rs994259923 2123 dbSNP
rs1350224760 2128 dbSNP
rs3282 2131 dbSNP
rs1309208027 2136 dbSNP
rs771284624 2140 dbSNP
rs1412169688 2150 dbSNP
rs1398029592 2157 dbSNP
rs1045754569 2163 dbSNP
rs906138238 2165 dbSNP
rs1157871815 2166 dbSNP
rs184004291 2169 dbSNP
rs1459145538 2170 dbSNP
rs1305301987 2173 dbSNP
rs1178114668 2174 dbSNP
rs144225552 2178 dbSNP
rs5789521 2178 dbSNP
rs766479488 2178 dbSNP
rs1023776193 2182 dbSNP
rs1182837545 2192 dbSNP
rs1028250506 2194 dbSNP
rs4076396 2206 dbSNP
rs548789334 2207 dbSNP
rs765792070 2209 dbSNP
rs1483609387 2234 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' cuauauaugucuAAG-GUAUGUAga 5'
                      |||  | ||||  
Target 5' ------ucucacUUCAGACACAUa- 3'
 		1 - 18
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000318881.6 | 3UTR | UCUCACUUCAGACACAUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000318881.6 | 3UTR | UCUCACUUCAGACACAUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
Click to see details
37 hsa-miR-3171 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT117345 MAPRE2 microtubule associated protein RP/EB family member 2 2 2
MIRT152426 ARID3A AT-rich interaction domain 3A 2 2
MIRT227670 SET SET nuclear proto-oncogene 2 2
MIRT293606 PVR poliovirus receptor 2 2
MIRT442923 TFDP2 transcription factor Dp-2 2 2
MIRT447007 RSF1 remodeling and spacing factor 1 2 2
MIRT450195 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT450883 COL4A5 collagen type IV alpha 5 chain 2 2
MIRT459707 ZNF641 zinc finger protein 641 2 2
MIRT467111 SRI sorcin 2 2
MIRT468271 SFXN1 sideroflexin 1 2 2
MIRT484168 WDR82P1 WD repeat domain 82 pseudogene 1 2 8
MIRT502274 H3F3B H3 histone family member 3B 2 4
MIRT504190 FAM127B retrotransposon Gag like 8A 2 2
MIRT507718 CMPK1 cytidine/uridine monophosphate kinase 1 2 6
MIRT513852 JARID2 jumonji and AT-rich interaction domain containing 2 2 8
MIRT521900 PIAS1 protein inhibitor of activated STAT 1 2 2
MIRT525975 SPA17 sperm autoantigenic protein 17 2 2
MIRT534599 RORA RAR related orphan receptor A 2 2
MIRT537572 ESYT2 extended synaptotagmin 2 2 2
MIRT539261 ANKRD44 ankyrin repeat domain 44 2 2
MIRT544214 SRSF11 serine and arginine rich splicing factor 11 2 4
MIRT553877 SUPT7L SPT7 like, STAGA complex gamma subunit 2 4
MIRT564547 CCDC80 coiled-coil domain containing 80 2 2
MIRT571228 SYT9 synaptotagmin 9 2 2
MIRT572016 H3F3C H3 histone family member 3C 2 2
MIRT613116 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT629028 MMP16 matrix metallopeptidase 16 2 4
MIRT635228 CD59 CD59 molecule (CD59 blood group) 2 2
MIRT641493 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT648008 ZNF431 zinc finger protein 431 2 2
MIRT697344 ZNF544 zinc finger protein 544 2 2
MIRT700991 PDE3A phosphodiesterase 3A 2 2
MIRT704714 CHD9 chromodomain helicase DNA binding protein 9 2 2
MIRT705320 ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 2 2
MIRT705387 ATP1B3 ATPase Na+/K+ transporting subunit beta 3 2 2
MIRT715811 NUDT7 nudix hydrolase 7 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3171 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-3171 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-3171 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3171 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

Error report submission