pre-miRNA Information
pre-miRNA hsa-mir-4481   
Genomic Coordinates chr10: 12653138 - 12653197
Description Homo sapiens miR-4481 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4481
Sequence 1| GGAGUGGGCUGGUGGUU |17
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1299710636 5 dbSNP
rs1433739601 12 dbSNP
rs1266754238 14 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TOB2   
Synonyms APRO5, TOB4, TOBL, TROB2
Description transducer of ERBB2, 2
Transcript NM_016272   
Expression
Putative miRNA Targets on TOB2
3'UTR of TOB2
(miRNA target sites are highlighted)
>TOB2|NM_016272|3'UTR
   1 CCATCTACCTGCCCGTGGGGCCAGGAGCACCCAAGACCACAGAAAAGAGAAAGGAAAGGCCAAAAAAAAGAGGAAAAGAA
  81 AAATGTACAAAAAGATTTTCGATCTTCTCACTCTTACTTCTAGAAAAAAGATCCAGCCCAGGCACGGAATGGGAGGGCCC
 161 TGCAAAGCACCCAAGTGTGTTTCACTCACCCCTTACCGCTCGCCCACCGGCCTGTGATTTATTTGGTTGGTTTGGGTTTT
 241 ATATTTCTTTTTCTTTTTTTTTTTTCTTACATGTAGTTTTCTATATAACATCTTTAATGAGTGGCTTCCTGTGCTAAGAA
 321 TGGTCCAGATGTGAACTGCTGCTCCCTGCTCCTCCCTTCCTCCTTCACACTCCTAGTTTAGGATTGATGTGTCCAAGCTC
 401 ATAGGGAAGAAAGAGCTGCAGCTGGAGCCTGACCCTCCCTGGAACAGGGAGAGGCTGGCCCGTGTCACTGCCTCTGTCAC
 481 CCAGCTATCCTCGCACTCAAAGCCATCCAACCTCAGCAGGCCTTCTCGGGCCCTGCCACCTGAATAGGTCTGACCCCAGT
 561 CCCCACTCCCTTTCAGGCTGGGCCACAGGGAGTTGCTGGCTGGCCACTTGACACCCTCCCCCTGGAGCTGATGTCTGTGA
 641 CTACAGGGAGATTAGCACTTCGTCTAGTGAAACTCCTTTCATCTCTGTCCTATGGCCCCACCCCACCATTCCCTCTAGGC
 721 CCAGACCATCATCATGGCCCTGGCCATTGATGTGTATGGGCTTTCTTTCCCTCATGCAGCCCCTTCTTCCCCAGGCTGGA
 801 TGTTGTGGGTAGGGAGGGGTGTGTGTGTGTGTATTTGGTTTGCTGTCCTTTTTTAAAGGATTCCAAGCCATGTGAAACTT
 881 CCCTTCTGGATGTGATTCTGGGTCGCAAGTCCTTATTTATATGTGAGGCTGGGGAATGGGCTGGGGGTATTGGCAGTCCT
 961 TTTGCAGGGCAGTGTGTGTGGTGGGGTGACACCGCTGTGGCTTAGCCCAAGACACTCCCAGAGGAAAACACTGCAGAAGG
1041 AACTGGTTTGCAGACTGTGGAAGGATCTGCAGTTTTGTTTTTGACCAAAAAAATAATAATAAGTTAGCTCTGAAGGGCAG
1121 AGGGAATACCCAAGCCCCTGATGCCTATGAGAAGTCCCTGGACTTCAACCCTCCTGTTGTTTGGCCTTAGCCCAGAGGGA
1201 GCTGCTCACCTGAGCACCCTTGGGGGTGGGCAGAGAGGCAGGGTGGGATTTTAGAGTTAGTGTCTGTGCGGGGGCAGCCC
1281 TGAGCCTGGAGTTGAGACTTTGGGGTCTCTTAGTTTGGAGGTGTTGAGTGCATTTGTGCCCCTGCCTGGTTGAGAGCTTC
1361 TTGGTACCTCTTGCCACCCCTTCTCACTGCCCTGACCCAACCCCACTGGACCTTGATGCTGCGAGGAGTGGTGTCCTGAC
1441 GGACTCAGCACTCCCGCCTGATGTATTGGATCATAGGAGAGCACTTGCTCTCCTGCCTCTGCCAGGAGAGGGCTTGTTCC
1521 TCCAACTCTAGGAGGCCAGGCAAGCATGGACAGGAGCCAAGGGAGCAGGGTCATTAACTTTTTCTTCTTTGCAAAGTGGG
1601 CACTTGGCATCAGGGTCCCAATCACCAGAAAGCACCAAAGCCCCTGGCACCCCACCCACTCCATCCTACCCAGGGACCCC
1681 AAGTAGGCAACTGTTATGGCAGTGGGTCCAGCCCAGGCCAGCACTGCCAGCCTCCTCTCCCTGCAGTAGGCACCAGCTCT
1761 ACCTCCCCCGGCAGGCAATGTCCTGGCTTCTCAGCCCAGCACCATCTGTTCCCCTAGACTTCTCAGGGGCCAGCCCAGTC
1841 TGGGCCACCCTTTGTTTCCCTCATCCTCGGCTCCCACACAGGTGACAGACCCAGCAGATAGCTTCTCTCTGGGAAAGGTT
1921 GGATGCTGCCTTACATCCCCTTCTAGCCCTCCTCCCATCCACACACACAGGCACCCACCCACACCAGGTCGGCTTGTTTC
2001 TCACATGTAGGGAGAGAGGGGAGACCAACCCCTTTGTGTCTTTTGAAATACGAAGAAAAATGTGTGTTCAGGAGCATGAC
2081 TCCAGTGCTGCGCTCTTGGGCCCAGTTCAGTCTGTCTTGTCTCAAATCTAGGCATTTTTGCTTCAATTTTATTTTTTTTA
2161 AGAATACAAAAACAGAAATCTGCACTAATTTACCTGGTTTCGTAGGAAAACTTTTTTTTATTTTTTACATTTTTTGGTGT
2241 CCGTTTGTATTGAATAATTTGCTACATTTGTAAAATGTAAGAGGTATATAATATATGTATATTTCTAACGTAAAAAACAT
2321 AATTTTTTTCTTTTCAAGATTTTTTCTTAAAAAGATGAGAGAAACATATTTTTTCAGGAAAAACAAACTTTAAAAAAAAA
2401 AGAGGAGAAATAAAACCTTTTCTCCCCTTTCCCCATCCTCTATCTATCCCTCTTTCCCAGGAACAAATCAAAAGGTGGAT
2481 TATCTTCTGAAGAATGGAAACTGTTAGTCCAGAATGATGTGTTTTTCTCAATGCAGTGAGTTATAGATTCTCTAGTTTTC
2561 TCCCTAGGGATGGGAAGGGGGCATTGAGGCAAGCCTGGAGAGGAGCCCGGGGAGCAGGGTCATGAACTTTTTTCTTTAGT
2641 GAAGGAGGAATACAATCAAGGGTTTTGTATTCAGAATGTTGTGCAATATTTTGGAATGGGACATTGGTGTGTTTAGAGAT
2721 TTTAGTTTAAAAACAAAACAAAAAGATTGATCAAATCTGTACAGTTTCTATTGTTCCAGATTTTTTTAAGTTTGTATTAA
2801 AAGCATGATACATAATAGCCTTCAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uugGUGGUC--GGGUGAGg 5'
             | ||||  ||||||| 
Target 5' tgaCCCCAGTCCCCACTCc 3'
551 - 569 152.00 -24.90
2
miRNA  3' uugGUGGUCGGGUGAGg 5'
             | ||| ||||||| 
Target 5' gcaCCCCA-CCCACTCc 3'
1647 - 1662 149.00 -23.10
3
miRNA  3' uuGGUGGUCGGGUGAGg 5'
            | |:|  |:||||| 
Target 5' ttCGATCTTCTCACTCt 3'
98 - 114 131.00 -13.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30517473 2 COSMIC
COSN31480848 5 COSMIC
COSN30106144 11 COSMIC
COSN18722267 25 COSMIC
COSN20073056 62 COSMIC
COSN30177866 67 COSMIC
COSN20080165 76 COSMIC
COSN27408889 254 COSMIC
COSN31480934 292 COSMIC
COSN25491258 318 COSMIC
COSN31483897 493 COSMIC
COSN1262312 544 COSMIC
COSN30163267 552 COSMIC
COSN31595723 588 COSMIC
COSN15662103 617 COSMIC
COSN31522238 622 COSMIC
COSN31480551 625 COSMIC
COSN16629982 769 COSMIC
COSN27344008 819 COSMIC
COSN5771408 1106 COSMIC
COSN9166398 1201 COSMIC
COSN30175446 1233 COSMIC
COSN31595266 1425 COSMIC
COSN30539996 1633 COSMIC
COSN31609703 1868 COSMIC
COSN24307421 1936 COSMIC
COSN26555565 1962 COSMIC
COSN28761578 2140 COSMIC
COSN19655202 2310 COSMIC
COSN31544992 2338 COSMIC
COSN26272103 2366 COSMIC
COSN31481561 2392 COSMIC
COSN31584982 2422 COSMIC
COSN31597738 2427 COSMIC
COSN31584136 2451 COSMIC
COSN31493237 2484 COSMIC
COSN26499235 2491 COSMIC
COSN31544652 2541 COSMIC
COSN31539785 2600 COSMIC
COSN31546974 2624 COSMIC
COSN31526136 2634 COSMIC
COSN31490211 2674 COSMIC
COSN26237881 2720 COSMIC
COSN5992966 2818 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs778876078 1 dbSNP
rs1367414151 9 dbSNP
rs757290970 14 dbSNP
rs370123076 15 dbSNP
rs764326164 17 dbSNP
rs756020212 18 dbSNP
rs973153462 23 dbSNP
rs962104409 25 dbSNP
rs752507558 28 dbSNP
rs1448844875 29 dbSNP
rs767627844 35 dbSNP
rs747060261 51 dbSNP
rs1428157884 53 dbSNP
rs1362101349 54 dbSNP
rs1298203292 55 dbSNP
rs995209166 56 dbSNP
rs1423471858 58 dbSNP
rs1391840666 59 dbSNP
rs898237903 61 dbSNP
rs1166831223 62 dbSNP
rs561164846 69 dbSNP
rs992490506 70 dbSNP
rs1318011575 72 dbSNP
rs1387048961 72 dbSNP
rs781584943 73 dbSNP
rs1435094041 74 dbSNP
rs1055588995 84 dbSNP
rs937157142 85 dbSNP
rs769078750 93 dbSNP
rs1328577042 94 dbSNP
rs542562765 97 dbSNP
rs928459735 100 dbSNP
rs111462313 101 dbSNP
rs1345753743 109 dbSNP
rs1045621474 111 dbSNP
rs1221766442 113 dbSNP
rs1464385686 114 dbSNP
rs1429658921 120 dbSNP
rs544923985 120 dbSNP
rs945971464 127 dbSNP
rs1197656049 132 dbSNP
rs140706006 136 dbSNP
rs1481236053 142 dbSNP
rs777717981 143 dbSNP
rs545062763 145 dbSNP
rs1457124729 146 dbSNP
rs1160560768 148 dbSNP
rs1222910512 160 dbSNP
rs1001797394 170 dbSNP
rs968888589 172 dbSNP
rs1022212021 173 dbSNP
rs1307448715 175 dbSNP
rs113833863 181 dbSNP
rs1331871300 188 dbSNP
rs577299751 191 dbSNP
rs958097469 192 dbSNP
rs777840923 197 dbSNP
rs1041152622 198 dbSNP
rs756422767 199 dbSNP
rs1262440388 201 dbSNP
rs975470051 202 dbSNP
rs367648355 208 dbSNP
rs1267880047 209 dbSNP
rs534883904 210 dbSNP
rs1490734013 211 dbSNP
rs1179588904 212 dbSNP
rs1404027239 214 dbSNP
rs779853764 220 dbSNP
rs1343064779 228 dbSNP
rs1472651527 229 dbSNP
rs1008457669 236 dbSNP
rs1183105168 241 dbSNP
rs889815149 249 dbSNP
rs1050276777 251 dbSNP
rs1456878813 251 dbSNP
rs1391979644 252 dbSNP
rs1306433291 253 dbSNP
rs931909952 253 dbSNP
rs1349892031 258 dbSNP
rs920402656 259 dbSNP
rs1309292796 260 dbSNP
rs1338621082 264 dbSNP
rs1244046756 265 dbSNP
rs1037947308 266 dbSNP
rs1265748730 266 dbSNP
rs1273494366 266 dbSNP
rs550589208 266 dbSNP
rs75986371 266 dbSNP
rs573897756 273 dbSNP
rs1483207421 284 dbSNP
rs907606469 286 dbSNP
rs758224015 288 dbSNP
rs879214801 290 dbSNP
rs992606243 317 dbSNP
rs1187463812 324 dbSNP
rs959664759 325 dbSNP
rs1386205267 329 dbSNP
rs926962764 341 dbSNP
rs1353886732 355 dbSNP
rs547603303 386 dbSNP
rs1462747522 396 dbSNP
rs1167973655 402 dbSNP
rs1400172820 403 dbSNP
rs1395320468 404 dbSNP
rs1266912826 406 dbSNP
rs951699904 412 dbSNP
rs1025926716 429 dbSNP
rs969382795 434 dbSNP
rs182015675 435 dbSNP
rs1467002095 439 dbSNP
rs1225873534 442 dbSNP
rs1296654773 445 dbSNP
rs1342432044 449 dbSNP
rs1424145749 455 dbSNP
rs995574829 461 dbSNP
rs750333663 462 dbSNP
rs1244264385 468 dbSNP
rs1463079759 472 dbSNP
rs1187060409 474 dbSNP
rs1019647141 476 dbSNP
rs1429279107 485 dbSNP
rs1172808917 487 dbSNP
rs1375960595 489 dbSNP
rs1465628736 490 dbSNP
rs1055515282 492 dbSNP
rs889761189 493 dbSNP
rs1479601752 498 dbSNP
rs1319632537 514 dbSNP
rs1001297081 520 dbSNP
rs1191878612 527 dbSNP
rs1215896033 528 dbSNP
rs907009562 533 dbSNP
rs1045954428 534 dbSNP
rs945927816 539 dbSNP
rs765209041 542 dbSNP
rs1054418022 553 dbSNP
rs761299825 555 dbSNP
rs1207402261 556 dbSNP
rs1188336141 557 dbSNP
rs899070837 558 dbSNP
rs936635375 561 dbSNP
rs1265509704 564 dbSNP
rs925295856 565 dbSNP
rs753414740 567 dbSNP
rs1310101042 569 dbSNP
rs964114992 570 dbSNP
rs1056876776 574 dbSNP
rs912670696 577 dbSNP
rs1432607756 585 dbSNP
rs926910821 592 dbSNP
rs980167125 596 dbSNP
rs1405239398 598 dbSNP
rs1284580322 599 dbSNP
rs189462855 607 dbSNP
rs1227051511 614 dbSNP
rs987364030 616 dbSNP
rs1268079101 617 dbSNP
rs537358102 618 dbSNP
rs1318103454 620 dbSNP
rs148068050 625 dbSNP
rs1264125280 626 dbSNP
rs914792637 647 dbSNP
rs1200438689 661 dbSNP
rs1448994452 662 dbSNP
rs951613999 669 dbSNP
rs1026315365 673 dbSNP
rs1271063003 681 dbSNP
rs1400720817 681 dbSNP
rs995776771 683 dbSNP
rs962341371 685 dbSNP
rs1181610100 693 dbSNP
rs1175502390 704 dbSNP
rs989108394 708 dbSNP
rs145523137 711 dbSNP
rs1379591692 712 dbSNP
rs1304614022 724 dbSNP
rs1176808291 725 dbSNP
rs1001223324 726 dbSNP
rs1418563073 730 dbSNP
rs1248590050 738 dbSNP
rs752427630 742 dbSNP
rs906936012 752 dbSNP
rs1024091963 754 dbSNP
rs1010481715 756 dbSNP
rs1294189037 759 dbSNP
rs760315013 764 dbSNP
rs1242862039 766 dbSNP
rs1202209867 781 dbSNP
rs891628897 789 dbSNP
rs1233578618 792 dbSNP
rs1342359343 794 dbSNP
rs1054744895 806 dbSNP
rs1471087428 814 dbSNP
rs954137062 816 dbSNP
rs867180806 818 dbSNP
rs1412748645 819 dbSNP
rs1257410616 820 dbSNP
rs1233597215 821 dbSNP
rs935934101 827 dbSNP
rs1315809852 833 dbSNP
rs1328934036 833 dbSNP
rs1368285429 833 dbSNP
rs903841637 834 dbSNP
rs1028398829 837 dbSNP
rs1214194425 847 dbSNP
rs1301641938 854 dbSNP
rs138699434 855 dbSNP
rs1247130589 856 dbSNP
rs1317685949 863 dbSNP
rs764921713 884 dbSNP
rs1340280258 890 dbSNP
rs1039662310 900 dbSNP
rs1273720250 904 dbSNP
rs942733137 905 dbSNP
rs1377594249 911 dbSNP
rs1335761477 915 dbSNP
rs1242431281 927 dbSNP
rs1461745160 931 dbSNP
rs1394082548 935 dbSNP
rs80048472 936 dbSNP
rs1388154536 938 dbSNP
rs772441408 940 dbSNP
rs1168145452 944 dbSNP
rs1420981146 946 dbSNP
rs115432543 949 dbSNP
rs938527500 959 dbSNP
rs547959835 960 dbSNP
rs1454033312 973 dbSNP
rs183946738 978 dbSNP
rs1044177417 980 dbSNP
rs1362108731 981 dbSNP
rs1430229476 981 dbSNP
rs1341791483 983 dbSNP
rs962936007 988 dbSNP
rs1262663168 989 dbSNP
rs41276319 993 dbSNP
rs771620269 994 dbSNP
rs1446246855 996 dbSNP
rs1193397377 1000 dbSNP
rs1243470599 1006 dbSNP
rs192175972 1013 dbSNP
rs971090786 1021 dbSNP
rs529115343 1023 dbSNP
rs1024435673 1025 dbSNP
rs1429394839 1026 dbSNP
rs140352200 1045 dbSNP
rs5758350 1048 dbSNP
rs912696918 1050 dbSNP
rs1032864617 1051 dbSNP
rs1400467186 1054 dbSNP
rs1319438546 1060 dbSNP
rs1000010160 1064 dbSNP
rs900415186 1065 dbSNP
rs1200646177 1071 dbSNP
rs1282660984 1077 dbSNP
rs1346238236 1078 dbSNP
rs532808510 1087 dbSNP
rs1225227594 1088 dbSNP
rs1038964260 1091 dbSNP
rs1205495197 1094 dbSNP
rs1283201769 1094 dbSNP
rs954251236 1094 dbSNP
rs559022211 1096 dbSNP
rs769788887 1100 dbSNP
rs201548277 1103 dbSNP
rs942703768 1108 dbSNP
rs891131882 1112 dbSNP
rs1268926469 1122 dbSNP
rs1481143641 1125 dbSNP
rs974197532 1129 dbSNP
rs1362534032 1142 dbSNP
rs1051583993 1147 dbSNP
rs540768968 1148 dbSNP
rs1387617268 1161 dbSNP
rs930092774 1170 dbSNP
rs1366221140 1178 dbSNP
rs1015595392 1179 dbSNP
rs1313219903 1194 dbSNP
rs1381811646 1205 dbSNP
rs1358896061 1218 dbSNP
rs1005171555 1220 dbSNP
rs1281002697 1226 dbSNP
rs934002917 1244 dbSNP
rs1354028379 1251 dbSNP
rs1221212105 1252 dbSNP
rs1292022184 1266 dbSNP
rs1490749815 1267 dbSNP
rs1035645656 1269 dbSNP
rs886346523 1269 dbSNP
rs918689234 1270 dbSNP
rs1183172525 1273 dbSNP
rs1365103282 1279 dbSNP
rs905725586 1284 dbSNP
rs1365873364 1321 dbSNP
rs1443194194 1323 dbSNP
rs573881631 1324 dbSNP
rs1426851562 1329 dbSNP
rs941541735 1330 dbSNP
rs373771106 1341 dbSNP
rs1395865863 1346 dbSNP
rs544017590 1348 dbSNP
rs1391852736 1350 dbSNP
rs980352656 1362 dbSNP
rs1338678920 1363 dbSNP
rs971435211 1366 dbSNP
rs1052795489 1368 dbSNP
rs1023986685 1396 dbSNP
rs188276068 1398 dbSNP
rs1361135980 1403 dbSNP
rs1225743402 1408 dbSNP
rs1250202737 1412 dbSNP
rs1480692461 1417 dbSNP
rs988943745 1422 dbSNP
rs576626129 1423 dbSNP
rs1427485670 1429 dbSNP
rs1253263031 1432 dbSNP
rs987041586 1433 dbSNP
rs932792710 1437 dbSNP
rs146711808 1440 dbSNP
rs41276317 1441 dbSNP
rs1207961406 1447 dbSNP
rs999977760 1455 dbSNP
rs908652458 1456 dbSNP
rs982777414 1458 dbSNP
rs878943661 1460 dbSNP
rs566124316 1462 dbSNP
rs1226431819 1466 dbSNP
rs964556252 1481 dbSNP
rs960719762 1486 dbSNP
rs1384735274 1489 dbSNP
rs1432392572 1490 dbSNP
rs1294436815 1492 dbSNP
rs1307766681 1498 dbSNP
rs1228939531 1499 dbSNP
rs143705293 1506 dbSNP
rs1253811089 1509 dbSNP
rs535986703 1513 dbSNP
rs1321956086 1522 dbSNP
rs567444875 1530 dbSNP
rs1244083491 1533 dbSNP
rs1462952010 1536 dbSNP
rs370712667 1537 dbSNP
rs1261257843 1540 dbSNP
rs970275042 1541 dbSNP
rs1022802433 1546 dbSNP
rs1427304599 1553 dbSNP
rs1011708513 1556 dbSNP
rs892879291 1596 dbSNP
rs1053319170 1599 dbSNP
rs41276315 1607 dbSNP
rs1362224640 1613 dbSNP
rs890804098 1614 dbSNP
rs1383624373 1622 dbSNP
rs1167642650 1623 dbSNP
rs1280728051 1625 dbSNP
rs1051262655 1628 dbSNP
rs932907364 1638 dbSNP
rs569807170 1642 dbSNP
rs141317378 1643 dbSNP
rs532758375 1671 dbSNP
rs1326328842 1672 dbSNP
rs1214082598 1685 dbSNP
rs1260565586 1689 dbSNP
rs1486284058 1690 dbSNP
rs921396679 1693 dbSNP
rs370341833 1697 dbSNP
rs941562352 1702 dbSNP
rs56176102 1704 dbSNP
rs564491250 1710 dbSNP
rs1431316987 1731 dbSNP
rs1477970247 1737 dbSNP
rs982895194 1741 dbSNP
rs1158092043 1744 dbSNP
rs540704799 1748 dbSNP
rs927971131 1750 dbSNP
rs41276313 1756 dbSNP
rs1404994740 1758 dbSNP
rs1023338433 1763 dbSNP
rs1267994271 1765 dbSNP
rs1222577195 1769 dbSNP
rs865872772 1770 dbSNP
rs1306654886 1772 dbSNP
rs1317930547 1782 dbSNP
rs1011407381 1783 dbSNP
rs868180767 1790 dbSNP
rs1289836062 1803 dbSNP
rs957456541 1811 dbSNP
rs1219457010 1812 dbSNP
rs184637794 1822 dbSNP
rs1273111358 1827 dbSNP
rs113362539 1833 dbSNP
rs1176578703 1857 dbSNP
rs1408377338 1858 dbSNP
rs576581365 1868 dbSNP
rs866018003 1869 dbSNP
rs1161484832 1894 dbSNP
rs1050725983 1896 dbSNP
rs1328764280 1899 dbSNP
rs1445266865 1900 dbSNP
rs1352265033 1902 dbSNP
rs1440597814 1905 dbSNP
rs996948568 1907 dbSNP
rs1374762172 1909 dbSNP
rs200324753 1916 dbSNP
rs1313465421 1917 dbSNP
rs1358985243 1919 dbSNP
rs1247012916 1930 dbSNP
rs1171855534 1933 dbSNP
rs900077748 1935 dbSNP
rs1039048028 1940 dbSNP
rs1203972137 1960 dbSNP
rs1233353340 1962 dbSNP
rs941524101 1965 dbSNP
rs1181510816 1970 dbSNP
rs1242314959 1970 dbSNP
rs1165119418 1973 dbSNP
rs1465779885 1973 dbSNP
rs887288107 1974 dbSNP
rs1408842408 1978 dbSNP
rs1424031187 1978 dbSNP
rs1047156991 1979 dbSNP
rs939421565 1982 dbSNP
rs1170237422 1984 dbSNP
rs1335078417 1990 dbSNP
rs1382508258 1991 dbSNP
rs1478719847 1993 dbSNP
rs927918768 2001 dbSNP
rs1246853977 2005 dbSNP
rs1177902466 2006 dbSNP
rs1337737610 2014 dbSNP
rs1456427644 2018 dbSNP
rs1214056954 2019 dbSNP
rs747886031 2019 dbSNP
rs1239723706 2020 dbSNP
rs1319835464 2023 dbSNP
rs980763038 2025 dbSNP
rs1262234149 2027 dbSNP
rs1461623247 2031 dbSNP
rs1185248022 2036 dbSNP
rs948092568 2045 dbSNP
rs757122076 2050 dbSNP
rs558163313 2051 dbSNP
rs1421045504 2052 dbSNP
rs1467585988 2062 dbSNP
rs1174930254 2068 dbSNP
rs546558607 2070 dbSNP
rs941447543 2075 dbSNP
rs569309090 2090 dbSNP
rs4085935 2091 dbSNP
rs990502506 2094 dbSNP
rs866519807 2098 dbSNP
rs9611591 2103 dbSNP
rs1221220321 2104 dbSNP
rs1270777885 2109 dbSNP
rs1031467175 2110 dbSNP
rs977105399 2115 dbSNP
rs1282525593 2116 dbSNP
rs955117673 2118 dbSNP
rs1427445194 2124 dbSNP
rs1345767796 2128 dbSNP
rs1281968008 2133 dbSNP
rs4085936 2135 dbSNP
rs1216078104 2138 dbSNP
rs1264642561 2140 dbSNP
rs1238544965 2145 dbSNP
rs535869912 2151 dbSNP
rs1481090198 2152 dbSNP
rs1332379937 2156 dbSNP
rs959228191 2156 dbSNP
rs1383279523 2160 dbSNP
rs996506536 2160 dbSNP
rs1172707717 2162 dbSNP
rs899525085 2162 dbSNP
rs1403156586 2168 dbSNP
rs1282789680 2171 dbSNP
rs1346062499 2178 dbSNP
rs1235328398 2201 dbSNP
rs115305524 2202 dbSNP
rs1224173456 2208 dbSNP
rs1006236546 2220 dbSNP
rs1047268436 2220 dbSNP
rs1221090946 2220 dbSNP
rs1268985993 2220 dbSNP
rs1287695992 2220 dbSNP
rs887234835 2220 dbSNP
rs939537480 2225 dbSNP
rs752363257 2228 dbSNP
rs767323317 2229 dbSNP
rs1469918810 2242 dbSNP
rs906614993 2243 dbSNP
rs1425233312 2250 dbSNP
rs556623820 2254 dbSNP
rs1423047380 2256 dbSNP
rs1302549698 2260 dbSNP
rs1366284472 2275 dbSNP
rs1388392088 2276 dbSNP
rs1045199524 2277 dbSNP
rs1157552630 2283 dbSNP
rs1335154717 2287 dbSNP
rs1442650618 2294 dbSNP
rs1311276996 2295 dbSNP
rs948068204 2296 dbSNP
rs915244425 2309 dbSNP
rs1382100765 2310 dbSNP
rs1357886884 2311 dbSNP
rs779227661 2318 dbSNP
rs536852979 2319 dbSNP
rs1249006099 2320 dbSNP
rs770023253 2320 dbSNP
rs768832669 2322 dbSNP
rs1179645990 2330 dbSNP
rs1235561441 2332 dbSNP
rs1240414598 2333 dbSNP
rs1442943953 2333 dbSNP
rs1369086981 2336 dbSNP
rs935921493 2336 dbSNP
rs1459493163 2338 dbSNP
rs1166288936 2345 dbSNP
rs1212483971 2346 dbSNP
rs1443234757 2347 dbSNP
rs1395682110 2354 dbSNP
rs924563251 2363 dbSNP
rs1214542679 2366 dbSNP
rs1333051594 2369 dbSNP
rs1380338847 2370 dbSNP
rs977221821 2374 dbSNP
rs955231015 2383 dbSNP
rs569875654 2387 dbSNP
rs1310618839 2391 dbSNP
rs1245982129 2392 dbSNP
rs551372164 2392 dbSNP
rs1224593463 2402 dbSNP
rs1250336875 2402 dbSNP
rs1377395072 2404 dbSNP
rs963724329 2404 dbSNP
rs975580372 2404 dbSNP
rs1183405336 2405 dbSNP
rs1460282459 2405 dbSNP
rs1017014942 2408 dbSNP
rs34109631 2416 dbSNP
rs1449705396 2423 dbSNP
rs1005768413 2431 dbSNP
rs887349242 2433 dbSNP
rs539376998 2434 dbSNP
rs1172772981 2440 dbSNP
rs1403870621 2445 dbSNP
rs1469082150 2445 dbSNP
rs756139044 2449 dbSNP
rs1296969609 2455 dbSNP
rs1403899621 2459 dbSNP
rs1025944107 2461 dbSNP
rs1294161805 2484 dbSNP
rs1361978229 2490 dbSNP
rs1326525948 2505 dbSNP
rs1219738164 2506 dbSNP
rs1280610368 2519 dbSNP
rs6609 2521 dbSNP
rs546955735 2531 dbSNP
rs1203432614 2538 dbSNP
rs1256961418 2543 dbSNP
rs1484327301 2546 dbSNP
rs1203636430 2566 dbSNP
rs1261082876 2568 dbSNP
rs1478171517 2570 dbSNP
rs1195999993 2579 dbSNP
rs906729499 2580 dbSNP
rs1480107577 2581 dbSNP
rs1360695508 2595 dbSNP
rs1045128085 2596 dbSNP
rs1360809495 2597 dbSNP
rs112797816 2598 dbSNP
rs1401278555 2602 dbSNP
rs528868356 2605 dbSNP
rs1344107605 2606 dbSNP
rs192881080 2608 dbSNP
rs1183408852 2609 dbSNP
rs549893861 2612 dbSNP
rs1260341792 2614 dbSNP
rs1054186481 2621 dbSNP
rs774920626 2628 dbSNP
rs1218883076 2630 dbSNP
rs1266869860 2648 dbSNP
rs1490148807 2655 dbSNP
rs1191723171 2668 dbSNP
rs935371227 2676 dbSNP
rs924512631 2680 dbSNP
rs1489311891 2683 dbSNP
rs1286888793 2685 dbSNP
rs1041644959 2703 dbSNP
rs766852985 2706 dbSNP
rs922459668 2714 dbSNP
rs531801403 2718 dbSNP
rs1364436600 2719 dbSNP
rs1320467200 2720 dbSNP
rs975152172 2725 dbSNP
rs1294602641 2741 dbSNP
rs1292421415 2744 dbSNP
rs964142476 2747 dbSNP
rs909667069 2749 dbSNP
rs1242602168 2764 dbSNP
rs56394634 2767 dbSNP
rs188487784 2776 dbSNP
rs1222452113 2787 dbSNP
rs757226070 2789 dbSNP
rs139244475 2812 dbSNP
rs1176348330 2815 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' uuGGUGGUCGGGUGAGg 5'
            |:: || ||||| | 
Target 5' ccCUGGCACCCCACCC- 3'
2 - 17
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM4903825
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID14_NS
Location of target site NM_016272 | 3UTR | AUCCUCGCACUCAAAGCCAUCCAACCUCAGCAGGCCUUCUCGGGCCCUGCCACCUGAAUAGGUCUGACCCCAGUCCCCACUCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_016272 | 3UTR | CACCCCACCCACUCCAUCCUACCCAGGGACCCCAAGUAGGCAACUGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_016272 | 3UTR | CACCCCACCCACUCCAUCCUACCCAGGGACCCCAAGUAGGCAACUGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_016272 | 3UTR | UGGCACCCCACCCACUCCAUCCUACCCAGGGACCCCAAGUAGGCAACUGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_016272 | 3UTR | ACCCCACCCACUCCAUCCUACCCAGGGACCCCAAGUAGGCAACUGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_016272 | 3UTR | CUUCUCGGGCCCUGCCACCUGAAUAGGUCUGACCCCAGUCCCCACUCCCUUUCAGGCUGGGCCACAGGGAGUUGCUGGCUGGCCACUUGACACCCUCCCCCUGGAGCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_016272 | 3UTR | CCCACCCACUCCAUCCUACCCAGGGACCCCAAGUAGGCAACUGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000327492.3 | 3UTR | CCCCUGGCACCCCACCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000327492.3 | 3UTR | CCCCUGGCACCCCACCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
84 hsa-miR-4481 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT100715 TJAP1 tight junction associated protein 1 2 2
MIRT183589 ZC3H11A zinc finger CCCH-type containing 11A 2 2
MIRT338033 DAZAP2 DAZ associated protein 2 2 4
MIRT395796 SPCS3 signal peptidase complex subunit 3 2 2
MIRT443947 LRIT3 leucine rich repeat, Ig-like and transmembrane domains 3 2 2
MIRT450580 HIST1H2BG histone cluster 1 H2B family member g 2 6
MIRT451617 MEIS3P1 Meis homeobox 3 pseudogene 1 2 2
MIRT452331 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 2
MIRT453279 EFTUD2 elongation factor Tu GTP binding domain containing 2 2 2
MIRT455212 GNL1 G protein nucleolar 1 (putative) 2 2
MIRT455470 LYPLA2 lysophospholipase II 2 2
MIRT456503 PFKFB2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 2 2
MIRT456687 LDB1 LIM domain binding 1 2 2
MIRT456915 DDA1 DET1 and DDB1 associated 1 2 2
MIRT457603 IDS iduronate 2-sulfatase 2 2
MIRT457848 RNASEH2B ribonuclease H2 subunit B 2 4
MIRT458455 RPRM reprimo, TP53 dependent G2 arrest mediator homolog 2 2
MIRT460179 UNK unkempt family zinc finger 2 6
MIRT461465 SLC19A3 solute carrier family 19 member 3 2 2
MIRT464739 UBE2Q1 ubiquitin conjugating enzyme E2 Q1 2 2
MIRT465279 TRIM28 tripartite motif containing 28 2 2
MIRT468450 SETD1B SET domain containing 1B 2 2
MIRT468620 SUMO1 small ubiquitin-like modifier 1 2 6
MIRT469152 RNF121 ring finger protein 121 2 2
MIRT470073 PTGES2 prostaglandin E synthase 2 2 2
MIRT470172 PSMD11 proteasome 26S subunit, non-ATPase 11 2 4
MIRT473156 MLLT1 MLLT1, super elongation complex subunit 2 2
MIRT474308 LAMC1 laminin subunit gamma 1 2 2
MIRT474782 KIAA0895L KIAA0895 like 2 2
MIRT476484 GATAD2A GATA zinc finger domain containing 2A 2 2
MIRT477613 EFNA3 ephrin A3 2 2
MIRT479525 CDCA4 cell division cycle associated 4 2 2
MIRT479973 CARD10 caspase recruitment domain family member 10 2 2
MIRT480410 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480426 C17orf85 nuclear cap binding subunit 3 2 2
MIRT483573 SYT2 synaptotagmin 2 2 2
MIRT483664 QSOX2 quiescin sulfhydryl oxidase 2 2 4
MIRT484532 POLD3 DNA polymerase delta 3, accessory subunit 2 2
MIRT484616 SIX3 SIX homeobox 3 2 6
MIRT485897 ZFP36 ZFP36 ring finger protein 2 2
MIRT486505 MYH11 myosin heavy chain 11 2 2
MIRT487505 GRK5 G protein-coupled receptor kinase 5 2 2
MIRT488852 UBTF upstream binding transcription factor, RNA polymerase I 2 2
MIRT489464 MSC musculin 2 2
MIRT491170 LRP3 LDL receptor related protein 3 2 2
MIRT496627 TMEM67 transmembrane protein 67 2 2
MIRT497616 ANG angiogenin 2 2
MIRT497766 KIAA0895 KIAA0895 2 2
MIRT499680 MRE11A MRE11 homolog, double strand break repair nuclease 2 6
MIRT499774 SLC29A2 solute carrier family 29 member 2 2 2
MIRT501745 NSD1 nuclear receptor binding SET domain protein 1 2 2
MIRT504995 ZNF652 zinc finger protein 652 2 2
MIRT511664 HIST1H3C histone cluster 1 H3 family member c 2 2
MIRT511690 HIST1H2BO histone cluster 1 H2B family member o 2 4
MIRT511703 HIST1H2BL histone cluster 1 H2B family member l 2 4
MIRT511734 HIST1H2BE histone cluster 1 H2B family member e 2 8
MIRT512858 TBC1D13 TBC1 domain family member 13 2 2
MIRT513444 EMP1 epithelial membrane protein 1 2 6
MIRT515681 TFPI tissue factor pathway inhibitor 2 2
MIRT523529 GLUL glutamate-ammonia ligase 2 2
MIRT525546 PHB2 prohibitin 2 2 4
MIRT526209 SNX24 sorting nexin 24 2 2
MIRT531554 SRD5A1 steroid 5 alpha-reductase 1 2 2
MIRT533764 TMEM135 transmembrane protein 135 2 2
MIRT545582 SNRPA1 small nuclear ribonucleoprotein polypeptide A' 2 2
MIRT552434 ZNF460 zinc finger protein 460 2 2
MIRT561159 BCL2L12 BCL2 like 12 2 2
MIRT562345 EXOSC2 exosome component 2 2 2
MIRT570659 KDM6B lysine demethylase 6B 2 2
MIRT571076 TCHHL1 trichohyalin like 1 2 2
MIRT571330 TPCN2 two pore segment channel 2 2 2
MIRT571603 TOB2 transducer of ERBB2, 2 2 2
MIRT573013 RPP25 ribonuclease P and MRP subunit p25 2 2
MIRT609041 EP300 E1A binding protein p300 2 2
MIRT613398 DNAH17 dynein axonemal heavy chain 17 2 2
MIRT635589 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT661118 FPR1 formyl peptide receptor 1 2 2
MIRT690103 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT694972 PLAC8 placenta specific 8 2 2
MIRT695515 ALPI alkaline phosphatase, intestinal 2 2
MIRT695578 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT699570 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT701991 MIER3 MIER family member 3 2 2
MIRT725464 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4481 Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-mir-4481 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-4481 Tamoxifen 2733525 NSC180973 approved resistant cell line (MCF7)
hsa-mir-4481 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4481 Cisplatin 5460033 NSC119875 approved resistant cell line (CAL-27) (cytosolic RNA)
hsa-miR-4481 Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-4481 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4481 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)
hsa-miR-4481 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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