pre-miRNA Information
pre-miRNA hsa-mir-548t   
Genomic Coordinates chr4: 173268160 - 173268233
Description Homo sapiens miR-548t stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548t-3p
Sequence 46| AAAAACCACAAUUACUUUUGCACCA |70
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 2 4 + 173268206 29233923 MiREDiBase
A-to-I 3 4 + 173268207 29233923 MiREDiBase
A-to-I 4 4 + 173268208 29233923 MiREDiBase
A-to-I 10 4 + 173268214 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs73872515 5 dbSNP
rs1426966747 6 dbSNP
rs1158401109 21 dbSNP
rs943938928 24 dbSNP
Putative Targets

Gene Information
Gene Symbol PHF19   
Synonyms MTF2L1, PCL3, TDRD19B
Description PHD finger protein 19
Transcript NM_015651   
Other Transcripts NM_001009936   
Expression
Putative miRNA Targets on PHF19
3'UTR of PHF19
(miRNA target sites are highlighted)
>PHF19|NM_015651|3'UTR
   1 CTAGCCCCCGGGGGTGCCAGGGGTCCTGAAAACCAAAGGAGGAGCAGCAGAAGCCATAGGCTCCCCAGCTTTCTCCAGGC
  81 TGGGGTGGGAGAAGGAAGCAGGACAGAGCTGCAAGTGCCTGGCAGAATGCCCTGCCTGCCTGCCTGCCAGGCCAAGGCCT
 161 GCGTCTCTCTGCTGTACCAGCTCTGTTCCAGGGCCTCCTCAGGCTCGTTACCCCTGTGCCTGTGTCTCTACACACTCCAC
 241 ACCCCCTCAAACTCTGTTTATCTGTTCTCTGACCTTGTGTCCCCTGCGCTGGGACCCTTCCTCCTGAGGCCCAGGTCTTT
 321 GTCCCCAGTTGTGTGCCTTGACCTCTCTCGCCCCTTTCTGGGTGTGTTCGCACATCCTGTGTGTGCACAGCTGTCCCTCC
 401 ACTGGATCCCCTTCACACGTGACCCGTGGGGCAGCCAGTCCTCCCAGGGACTACATAACAGGCACCTTTGAGAGAGCATG
 481 GGAGAAGGTGGATAAGAGGATGCTGCTCAGTGCTTTTCTCTTCCACTTTCCTGCCACTCCCCACTACCCTCGGAGAGAGG
 561 TGGTGGGATGGGAGAGAGCCCCTGTGAAAGCCTGTGAGGATCTGAAGAGTAAAGGGCTGGGTCTGCCTCAGAAGGCACCA
 641 GCACCAGGGCCCAGGTATTAAGGCTGAGAGTGAAGGCTGCCAATGTCAGCTTTGGAGGTCCCAGAAGTCTTCTGTTCTCT
 721 GGCCTCACCCCCTCAGTCGCCATAGAGCTGGGCCTGGCCTTGCTGGAATGGAGGCATCCTTCCAAACCTGGGGGACGGGG
 801 GTGGGGGGTGGTAGTGGTGGGAGGGAAACCATGTCTTGCTAAACCTGTTTCTGGTGCCTCCCATCCCCAGACCCACCAGA
 881 CACCACACAGCAGACAATACACACCCACTCGCACAAGCTTCCATCCACATGTGTTGTACTTTCAGCTCTAGGCATGCAGA
 961 CAACCCCACACGGCCACACCACCACATGCCCAAGTGTACACACACAGAGCCACACCGTCCCTCTGGGCCTGCTGGCTCCT
1041 CCCTTGGCTTTCCCTTGGCCCACTTCCAGGGCCCAGGTGCTGCAACTAAATGTGAAAGCTCAGTGGCCGCTCCTTCTTTC
1121 AGCCCATCAACCAGCATTGGTCCCATAGGGAAGCACAGGGGACTCACCCTCTTTCATATCCCTTGCCCTGCCCTGAAATG
1201 GACAATCACTTTTTGGGATAGGTTGAAATTTTTAAAGAGCCTGCATCATTTGGTTCCCTCAAAGGGAAGCCCTTGCCAGT
1281 GGGGGTTTGAAAGAGAATTTTTGGAACCAACATTCAAATTCTGCCTCATCTGGAGGGAAACCAAAATTGGGAGGGGGAAG
1361 AGGACCCCTGATGTTTTGCTGCTTCCAGAGATATTAGAAACTGACTCACTTGATTGGAAAATGGACAAAAGTGCCTTGAC
1441 GTGGAGGGTGGGCACCAGATGGGGACCAGCCTTGCCAACTGCTGCTGTGGCCTCCAGCTTGGCTGGTTTTGCAGGCCGCC
1521 AGCAGGAAGGCGAAGGTGGTAGTACAGCAAGAGGCACTGGCGGGGCAGCAGGCCTGCAGGAGCTGTTTTTCCATTGCTAG
1601 GCCTGACCCCTCTCTACCTGTGAGCGTTCAGGGGGTCCCTGAGATAGTTTAGATGCCCCCCCATCTTAGACCTCAGCTCC
1681 CACAGTGCCTTTTAAGGGGGACCTCACCTCCTGTGCACAGCCCACCCACTTTCCTCTGCTTCCCTGGCACAGCCCAGGCA
1761 TAGACGAGCTGGCGTTGGACCCAGTTCTTCCCCCTTTTCAGCCCCACAGCTGCTGCCACAGGGGCCAACTAGGGCCAGGT
1841 GGAAGGGGAGCTGAGAAGCCAACCCCTAGCCCAGGGGTGCTGTGGGAACTGGGATCCAATTTGTAGCTTCCTGCCTGGCT
1921 TCAGAGAGCCCAGCAACCTTCTAGGCCTGCTTTCCAGACTTCTGAGATAGCCTGGGATGAGCAATCCTGTTATAGTACAT
2001 CTGGACCTTCCCTACCTGGGCTCTGGGGAGGCTGTGGGCCTGGAGAGGGAAAAGGAGGGAGGGGGTGTCTGCACCACCTG
2081 GGAAGATAGCACAAGGCCTAATGAGGTCACCCTGACTCCCCACCCCAGCATTTCATTCATACCAGATAATAGCTGCATTA
2161 CTGCCAACTGACCTTATAACCCTCTGCACCTTCAAAAAGATTCATGGTTTTTAATTGCTGCTTTTAATAACATTTGTTAA
2241 AGTTATAATTAATGTGTCTGATTTATGATTTAAAACCTCCCTTTGAACAATCAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' accACGUUUUCAUUAACACCAAAAa 5'
             | |||||  | |  ||||||| 
Target 5' accTTCAAAAAGATTCATGGTTTTt 3'
2188 - 2212 162.00 -7.80
2
miRNA  3' accacguuuucauuAAC--ACCAAAAa 5'
                        |||  ||||||| 
Target 5' ctgtggcctccagcTTGGCTGGTTTTg 3'
1485 - 1511 145.00 -9.70
3
miRNA  3' acCAC--GUUUUC--AUUA--A--CACCAAAAa 5'
            |||  :||:||  |: |  |  ||| |||| 
Target 5' agGTGGATAAGAGGATGCTGCTCAGTGCTTTTc 3'
486 - 518 123.00 -9.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN14368835 24 COSMIC
COSN31556789 45 COSMIC
COSN22220076 567 COSMIC
COSN22053786 971 COSMIC
COSN31489155 1116 COSMIC
COSN31555140 1148 COSMIC
COSN31529538 1295 COSMIC
COSN6378986 1350 COSMIC
COSN32062711 1464 COSMIC
COSN30172938 1674 COSMIC
COSN28822877 1700 COSMIC
COSN20878269 1703 COSMIC
COSN31533858 1895 COSMIC
COSN31529250 1933 COSMIC
COSN31515931 2202 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs758365979 4 dbSNP
rs750693927 5 dbSNP
rs1367274771 6 dbSNP
rs1395620273 8 dbSNP
rs765532008 9 dbSNP
rs554859029 10 dbSNP
rs767009093 10 dbSNP
rs527405490 11 dbSNP
rs754248863 15 dbSNP
rs1263324870 17 dbSNP
rs764567719 18 dbSNP
rs1327429846 23 dbSNP
rs761257275 27 dbSNP
rs775822063 29 dbSNP
rs761376089 33 dbSNP
rs765936854 33 dbSNP
rs1215379610 39 dbSNP
rs1385726868 40 dbSNP
rs1354120116 42 dbSNP
rs762430355 46 dbSNP
rs1327708784 47 dbSNP
rs772893191 48 dbSNP
rs769435251 50 dbSNP
rs766476744 56 dbSNP
rs1257353111 58 dbSNP
rs1332944518 61 dbSNP
rs1335175139 63 dbSNP
rs1329426730 69 dbSNP
rs1446061299 75 dbSNP
rs988507643 80 dbSNP
rs957226647 84 dbSNP
rs1215396394 87 dbSNP
rs535435205 94 dbSNP
rs1032802255 114 dbSNP
rs920199211 117 dbSNP
rs1187160920 121 dbSNP
rs1333876023 124 dbSNP
rs1263881002 131 dbSNP
rs992029658 132 dbSNP
rs1193013174 134 dbSNP
rs1419222942 139 dbSNP
rs1463327933 142 dbSNP
rs35429932 149 dbSNP
rs59911984 149 dbSNP
rs71506262 149 dbSNP
rs753440945 149 dbSNP
rs1001685425 153 dbSNP
rs970229891 162 dbSNP
rs1024411576 163 dbSNP
rs1014354359 166 dbSNP
rs370700058 177 dbSNP
rs967477203 196 dbSNP
rs1320914353 198 dbSNP
rs1216718306 201 dbSNP
rs1016229125 206 dbSNP
rs148268556 207 dbSNP
rs957916273 219 dbSNP
rs534781019 222 dbSNP
rs1186455893 227 dbSNP
rs1457778625 231 dbSNP
rs763098887 232 dbSNP
rs1049868850 234 dbSNP
rs1346657877 242 dbSNP
rs182759910 244 dbSNP
rs932707529 245 dbSNP
rs777457534 254 dbSNP
rs1375968066 256 dbSNP
rs900358792 259 dbSNP
rs1040249625 260 dbSNP
rs944492862 280 dbSNP
rs913156191 287 dbSNP
rs867163259 288 dbSNP
rs989131840 293 dbSNP
rs1201920810 296 dbSNP
rs898718441 301 dbSNP
rs1239473273 303 dbSNP
rs1307271326 322 dbSNP
rs1281071426 324 dbSNP
rs570641377 331 dbSNP
rs1486714809 341 dbSNP
rs1239536267 343 dbSNP
rs1056043968 345 dbSNP
rs935715098 347 dbSNP
rs925597970 349 dbSNP
rs1179390345 350 dbSNP
rs147210193 350 dbSNP
rs946083555 351 dbSNP
rs969800630 352 dbSNP
rs1023981210 355 dbSNP
rs913338580 363 dbSNP
rs1446420308 369 dbSNP
rs990111170 370 dbSNP
rs1299703436 376 dbSNP
rs1335300064 384 dbSNP
rs1416478542 393 dbSNP
rs957365262 394 dbSNP
rs1446276278 395 dbSNP
rs1304451334 402 dbSNP
rs1358233291 403 dbSNP
rs531047740 405 dbSNP
rs1278531607 406 dbSNP
rs1308642609 407 dbSNP
rs1207040048 408 dbSNP
rs1157612523 412 dbSNP
rs1231484345 418 dbSNP
rs1457623076 419 dbSNP
rs1177549248 422 dbSNP
rs1455181082 425 dbSNP
rs570211963 426 dbSNP
rs961487989 431 dbSNP
rs1424333519 437 dbSNP
rs1439832321 439 dbSNP
rs921959774 441 dbSNP
rs1381617787 450 dbSNP
rs1464924064 451 dbSNP
rs1326816415 454 dbSNP
rs1015885122 455 dbSNP
rs1006207228 463 dbSNP
rs975339463 465 dbSNP
rs1438766145 466 dbSNP
rs1274390104 475 dbSNP
rs548863178 480 dbSNP
rs964335719 482 dbSNP
rs1019415103 484 dbSNP
rs1008034515 487 dbSNP
rs888481645 500 dbSNP
rs1317616507 521 dbSNP
rs1045336341 525 dbSNP
rs949754363 529 dbSNP
rs1028721882 535 dbSNP
rs765439497 537 dbSNP
rs1273416306 538 dbSNP
rs755782634 549 dbSNP
rs901269724 550 dbSNP
rs1041115746 551 dbSNP
rs529627794 552 dbSNP
rs1421470214 556 dbSNP
rs1475460531 556 dbSNP
rs1477372415 563 dbSNP
rs1165432512 564 dbSNP
rs1396935231 565 dbSNP
rs1403768427 571 dbSNP
rs891616207 576 dbSNP
rs1237948493 584 dbSNP
rs1211982233 590 dbSNP
rs1268922180 591 dbSNP
rs1487154017 602 dbSNP
rs1340514622 616 dbSNP
rs995252221 620 dbSNP
rs898165648 629 dbSNP
rs1333173403 633 dbSNP
rs1207633995 634 dbSNP
rs1055890145 638 dbSNP
rs375272838 639 dbSNP
rs1217399987 642 dbSNP
rs1260896642 656 dbSNP
rs1053071893 662 dbSNP
rs1477482938 668 dbSNP
rs111664246 670 dbSNP
rs373466404 676 dbSNP
rs935898946 683 dbSNP
rs1471690035 686 dbSNP
rs1162828077 688 dbSNP
rs946199700 690 dbSNP
rs370137286 714 dbSNP
rs55636506 717 dbSNP
rs1304341529 724 dbSNP
rs1360419715 726 dbSNP
rs1415881228 733 dbSNP
rs913284794 738 dbSNP
rs925870796 739 dbSNP
rs936095120 750 dbSNP
rs921943023 752 dbSNP
rs762235870 756 dbSNP
rs1351000244 758 dbSNP
rs1224946717 759 dbSNP
rs979752956 762 dbSNP
rs1283201888 763 dbSNP
rs975162386 773 dbSNP
rs1226628396 774 dbSNP
rs559315528 779 dbSNP
rs942609287 783 dbSNP
rs1285231953 785 dbSNP
rs1233633416 789 dbSNP
rs113098701 790 dbSNP
rs532221934 796 dbSNP
rs1297267481 797 dbSNP
rs1419890810 802 dbSNP
rs1435435667 802 dbSNP
rs565018778 803 dbSNP
rs973773417 808 dbSNP
rs1330028490 809 dbSNP
rs1337924321 809 dbSNP
rs1448482893 809 dbSNP
rs962804391 815 dbSNP
rs555616620 821 dbSNP
rs1162131016 823 dbSNP
rs1033989473 832 dbSNP
rs1234455483 839 dbSNP
rs1404178376 844 dbSNP
rs1414465481 851 dbSNP
rs1342835045 856 dbSNP
rs776907027 860 dbSNP
rs1273383287 861 dbSNP
rs543603161 881 dbSNP
rs1183515070 886 dbSNP
rs917001467 889 dbSNP
rs1476757901 895 dbSNP
rs1262165298 897 dbSNP
rs1376410003 901 dbSNP
rs992537362 902 dbSNP
rs961598502 911 dbSNP
rs576190256 921 dbSNP
rs907412772 929 dbSNP
rs1024985466 931 dbSNP
rs1328853897 931 dbSNP
rs1440964977 933 dbSNP
rs908688170 939 dbSNP
rs1328867776 943 dbSNP
rs566498828 952 dbSNP
rs1219468255 953 dbSNP
rs1232388027 954 dbSNP
rs554539351 962 dbSNP
rs1321135176 963 dbSNP
rs1251818921 965 dbSNP
rs984411923 972 dbSNP
rs1319723091 974 dbSNP
rs953094678 977 dbSNP
rs1028544725 984 dbSNP
rs542924201 985 dbSNP
rs965332601 991 dbSNP
rs73541858 996 dbSNP
rs1009641865 997 dbSNP
rs1375344043 1002 dbSNP
rs551561945 1002 dbSNP
rs114043822 1007 dbSNP
rs1399068202 1010 dbSNP
rs1000003379 1015 dbSNP
rs146959890 1016 dbSNP
rs564701463 1017 dbSNP
rs558632978 1030 dbSNP
rs1463980165 1034 dbSNP
rs1216548840 1043 dbSNP
rs1277283472 1053 dbSNP
rs1422772138 1057 dbSNP
rs1247179777 1060 dbSNP
rs1335271476 1060 dbSNP
rs1263916630 1062 dbSNP
rs1488191847 1076 dbSNP
rs948426187 1077 dbSNP
rs377458716 1080 dbSNP
rs1193596587 1085 dbSNP
rs916908581 1088 dbSNP
rs918404334 1102 dbSNP
rs1056840827 1108 dbSNP
rs865997513 1109 dbSNP
rs1264138466 1110 dbSNP
rs1366424230 1113 dbSNP
rs1456943119 1116 dbSNP
rs1288997957 1119 dbSNP
rs537200239 1120 dbSNP
rs1189678158 1122 dbSNP
rs1398027455 1124 dbSNP
rs1488234440 1134 dbSNP
rs1355792325 1144 dbSNP
rs1229880198 1145 dbSNP
rs908264025 1149 dbSNP
rs984709735 1161 dbSNP
rs962465948 1172 dbSNP
rs1456852479 1176 dbSNP
rs1351633522 1179 dbSNP
rs952877936 1181 dbSNP
rs1257907764 1183 dbSNP
rs1258841241 1185 dbSNP
rs979758606 1209 dbSNP
rs1180521958 1210 dbSNP
rs1253620243 1223 dbSNP
rs971461548 1233 dbSNP
rs1159426553 1235 dbSNP
rs1381558351 1250 dbSNP
rs914842 1251 dbSNP
rs548565266 1252 dbSNP
rs1298825121 1253 dbSNP
rs892067742 1270 dbSNP
rs186308283 1275 dbSNP
rs1273076028 1277 dbSNP
rs1374681119 1279 dbSNP
rs1239585744 1282 dbSNP
rs1281633921 1285 dbSNP
rs1314519269 1288 dbSNP
rs1208674713 1293 dbSNP
rs566271570 1296 dbSNP
rs1255733968 1297 dbSNP
rs550011068 1301 dbSNP
rs975660048 1308 dbSNP
rs181927946 1310 dbSNP
rs1367754509 1315 dbSNP
rs1437273475 1341 dbSNP
rs190521985 1349 dbSNP
rs1327358771 1358 dbSNP
rs1425754994 1362 dbSNP
rs1416047757 1366 dbSNP
rs1443886955 1368 dbSNP
rs965399845 1369 dbSNP
rs1358293762 1372 dbSNP
rs1462316750 1378 dbSNP
rs1399460928 1393 dbSNP
rs1033155659 1394 dbSNP
rs1019607354 1399 dbSNP
rs564927935 1412 dbSNP
rs149269527 1424 dbSNP
rs186153155 1425 dbSNP
rs1463383141 1431 dbSNP
rs1375714338 1433 dbSNP
rs1301207587 1434 dbSNP
rs1009546507 1440 dbSNP
rs957018008 1441 dbSNP
rs944850126 1445 dbSNP
rs1197646277 1449 dbSNP
rs1032392437 1459 dbSNP
rs890435974 1474 dbSNP
rs1426091281 1475 dbSNP
rs1000437976 1478 dbSNP
rs904351657 1479 dbSNP
rs771720594 1481 dbSNP
rs1478022537 1492 dbSNP
rs1172620222 1513 dbSNP
rs1397877933 1514 dbSNP
rs531371107 1517 dbSNP
rs918520228 1523 dbSNP
rs1044321869 1531 dbSNP
rs181237760 1532 dbSNP
rs927182661 1533 dbSNP
rs980255630 1535 dbSNP
rs1220825004 1536 dbSNP
rs971194079 1538 dbSNP
rs1317720627 1541 dbSNP
rs916891172 1544 dbSNP
rs1290166175 1551 dbSNP
rs1209795368 1554 dbSNP
rs895512325 1560 dbSNP
rs202217214 1561 dbSNP
rs770527772 1562 dbSNP
rs956237504 1562 dbSNP
rs1488549378 1572 dbSNP
rs1033270389 1577 dbSNP
rs533070511 1581 dbSNP
rs1048105407 1582 dbSNP
rs542488639 1583 dbSNP
rs1416317996 1588 dbSNP
rs572304031 1607 dbSNP
rs41302653 1625 dbSNP
rs138415806 1626 dbSNP
rs776127784 1631 dbSNP
rs1402351707 1634 dbSNP
rs150082542 1638 dbSNP
rs1376311066 1639 dbSNP
rs1340226781 1657 dbSNP
rs993460436 1662 dbSNP
rs397825635 1663 dbSNP
rs570909410 1663 dbSNP
rs5900463 1663 dbSNP
rs1226281552 1671 dbSNP
rs897043365 1689 dbSNP
rs1038243124 1698 dbSNP
rs1218628627 1701 dbSNP
rs1261018808 1702 dbSNP
rs1487839153 1706 dbSNP
rs1188049596 1707 dbSNP
rs1239410761 1709 dbSNP
rs941325585 1713 dbSNP
rs77484121 1714 dbSNP
rs1380920847 1717 dbSNP
rs537565815 1718 dbSNP
rs576494636 1723 dbSNP
rs555121968 1734 dbSNP
rs1360519312 1735 dbSNP
rs1415370819 1738 dbSNP
rs1336610927 1759 dbSNP
rs116609171 1765 dbSNP
rs1313943345 1766 dbSNP
rs1376977029 1771 dbSNP
rs1241777551 1773 dbSNP
rs548113059 1774 dbSNP
rs1200990627 1777 dbSNP
rs1280422899 1779 dbSNP
rs1440485522 1783 dbSNP
rs968553796 1792 dbSNP
rs1239076256 1800 dbSNP
rs1441616198 1804 dbSNP
rs955685497 1806 dbSNP
rs1380200997 1818 dbSNP
rs1022737277 1819 dbSNP
rs1012682051 1833 dbSNP
rs1483749808 1836 dbSNP
rs369976338 1837 dbSNP
rs140639231 1842 dbSNP
rs1004290353 1846 dbSNP
rs1352388037 1848 dbSNP
rs1286078389 1850 dbSNP
rs1018158980 1858 dbSNP
rs1009084060 1870 dbSNP
rs1240499960 1873 dbSNP
rs954750909 1875 dbSNP
rs1334689900 1876 dbSNP
rs1233796617 1877 dbSNP
rs1026362719 1879 dbSNP
rs571278760 1880 dbSNP
rs1311852385 1886 dbSNP
rs1459296152 1893 dbSNP
rs1048652472 1894 dbSNP
rs1396452598 1901 dbSNP
rs1237574998 1937 dbSNP
rs189681550 1948 dbSNP
rs1201631124 1954 dbSNP
rs769883390 1955 dbSNP
rs899559282 1959 dbSNP
rs1171896832 1963 dbSNP
rs1466829874 1964 dbSNP
rs1039908261 1967 dbSNP
rs899169025 1970 dbSNP
rs1386900738 1971 dbSNP
rs531417238 1974 dbSNP
rs1360079482 1976 dbSNP
rs1187908164 1981 dbSNP
rs1159253150 1982 dbSNP
rs1222648628 1986 dbSNP
rs1837 1993 dbSNP
rs1319747510 2011 dbSNP
rs1216968903 2015 dbSNP
rs1005868450 2016 dbSNP
rs1488846672 2022 dbSNP
rs1211757815 2025 dbSNP
rs549153736 2031 dbSNP
rs1367249040 2035 dbSNP
rs1451492399 2036 dbSNP
rs905799742 2042 dbSNP
rs1265707336 2048 dbSNP
rs912820086 2052 dbSNP
rs1475776387 2059 dbSNP
rs1168073578 2067 dbSNP
rs1372211252 2072 dbSNP
rs1457940910 2078 dbSNP
rs1164545641 2089 dbSNP
rs1260007234 2094 dbSNP
rs1387974491 2096 dbSNP
rs988407240 2100 dbSNP
rs935362439 2101 dbSNP
rs1404215080 2127 dbSNP
rs1298747626 2135 dbSNP
rs1397984977 2143 dbSNP
rs1295088103 2146 dbSNP
rs1322608937 2148 dbSNP
rs1247293641 2161 dbSNP
rs576025850 2176 dbSNP
rs1191123126 2177 dbSNP
rs776916280 2187 dbSNP
rs559966191 2190 dbSNP
rs1044584553 2227 dbSNP
rs925293253 2236 dbSNP
rs1217913785 2247 dbSNP
rs1266043726 2254 dbSNP
rs1487507468 2254 dbSNP
rs377734737 2254 dbSNP
rs1186335558 2260 dbSNP
rs949872655 2267 dbSNP
rs542813455 2271 dbSNP
rs1189226908 2277 dbSNP
rs969465156 2278 dbSNP
rs1052854593 2280 dbSNP
rs1023648836 2281 dbSNP
rs991291379 2282 dbSNP
rs959828118 2294 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545214. RNA binding protein: AGO3. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545214
Method / RBP PAR-CLIP / AGO3
Cell line / Condition HEK293 / Control
Location of target site ENST00000373896.3 | 3UTR | UUUUUAAUUGCUGCUUUUAAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548t-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059365 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072839 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076945 PCGF2 polycomb group ring finger 2 2 6
MIRT083941 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085401 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109790 KLHL15 kelch like family member 15 2 2
MIRT114046 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130165 TXNIP thioredoxin interacting protein 2 6
MIRT150013 MIDN midnolin 2 2
MIRT181258 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205594 NCL nucleolin 2 2
MIRT222253 ACTB actin beta 2 4
MIRT245653 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250947 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252497 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271990 ARF1 ADP ribosylation factor 1 2 4
MIRT280804 RNF11 ring finger protein 11 2 2
MIRT293803 FEM1A fem-1 homolog A 2 2
MIRT318231 RREB1 ras responsive element binding protein 1 2 2
MIRT341455 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347413 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351860 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357983 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377094 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407303 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441564 LMOD3 leiomodin 3 2 2
MIRT442364 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443228 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443404 HMX3 H6 family homeobox 3 2 2
MIRT446055 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448277 ZNF652 zinc finger protein 652 2 2
MIRT450822 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453016 CCDC115 coiled-coil domain containing 115 2 17
MIRT454463 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456360 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460007 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463154 ZNF385A zinc finger protein 385A 2 6
MIRT463766 YPEL2 yippee like 2 2 2
MIRT468310 SFT2D2 SFT2 domain containing 2 2 2
MIRT470668 POLR2D RNA polymerase II subunit D 2 4
MIRT478517 CTTN cortactin 2 2
MIRT480507 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484718 INHBA inhibin beta A subunit 2 12
MIRT485494 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487302 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487771 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491876 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494304 CEP120 centrosomal protein 120 2 2
MIRT495396 TRIM24 tripartite motif containing 24 2 2
MIRT495646 CDK1 cyclin dependent kinase 1 2 2
MIRT496665 TMEM237 transmembrane protein 237 2 2
MIRT496837 ZNF460 zinc finger protein 460 2 2
MIRT498638 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503928 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506063 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506582 MIER3 MIER family member 3 2 4
MIRT506606 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506844 KIF23 kinesin family member 23 2 6
MIRT508536 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509669 ZNF354B zinc finger protein 354B 2 10
MIRT511170 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512147 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512831 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514558 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515856 AJAP1 adherens junctions associated protein 1 2 4
MIRT521848 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525364 SYNM synemin 2 2
MIRT527120 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527271 FBLN2 fibulin 2 2 2
MIRT527439 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527658 CD300E CD300e molecule 2 2
MIRT528334 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529033 EXOC8 exocyst complex component 8 2 2
MIRT529321 PDE5A phosphodiesterase 5A 2 2
MIRT529677 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529846 SMTN smoothelin 2 2
MIRT530385 ZNF431 zinc finger protein 431 2 2
MIRT530913 GPR85 G protein-coupled receptor 85 2 2
MIRT531794 KDR kinase insert domain receptor 2 2
MIRT532246 KLF2 Kruppel like factor 2 2 4
MIRT532658 CBX7 chromobox 7 2 2
MIRT533630 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534811 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534975 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536588 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536779 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538764 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539294 ANGEL2 angel homolog 2 2 2
MIRT539621 SHISA9 shisa family member 9 2 2
MIRT539651 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540347 OPHN1 oligophrenin 1 2 2
MIRT540413 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541396 CDC27 cell division cycle 27 2 2
MIRT542916 HSBP1 heat shock factor binding protein 1 2 2
MIRT544710 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544998 MFF mitochondrial fission factor 2 4
MIRT553289 TSPAN3 tetraspanin 3 2 2
MIRT553455 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553782 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554656 ROBO1 roundabout guidance receptor 1 2 2
MIRT555104 PURB purine rich element binding protein B 2 2
MIRT557235 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560861 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561545 SON SON DNA binding protein 2 2
MIRT561554 SLMO2 PRELI domain containing 3B 2 2
MIRT563764 ZNF678 zinc finger protein 678 2 2
MIRT565653 SIX4 SIX homeobox 4 2 2
MIRT568080 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568759 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569078 CADM2 cell adhesion molecule 2 2 2
MIRT569509 THYN1 thymocyte nuclear protein 1 2 2
MIRT571268 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571809 PHF19 PHD finger protein 19 2 2
MIRT572554 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573782 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576441 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576712 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608377 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608484 NKTR natural killer cell triggering receptor 2 6
MIRT610186 FAM49A family with sequence similarity 49 member A 2 2
MIRT611631 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613534 TRA2B transformer 2 beta homolog 2 2
MIRT616221 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622370 SALL1 spalt like transcription factor 1 2 2
MIRT624371 CDK12 cyclin dependent kinase 12 2 2
MIRT624995 ZNF665 zinc finger protein 665 2 4
MIRT626875 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627737 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628490 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633647 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634028 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635923 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638287 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641959 RNF115 ring finger protein 115 2 2
MIRT643573 CTNNA3 catenin alpha 3 2 2
MIRT645180 NOL9 nucleolar protein 9 2 4
MIRT647497 ZNF639 zinc finger protein 639 2 2
MIRT647682 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648422 MYOZ3 myozenin 3 2 2
MIRT650113 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651076 ZNF518B zinc finger protein 518B 2 4
MIRT651415 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651456 XKR4 XK related 4 2 2
MIRT653619 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653637 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654896 POU2F1 POU class 2 homeobox 1 2 2
MIRT656483 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658016 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658041 FZD10 frizzled class receptor 10 2 2
MIRT660093 BTBD3 BTB domain containing 3 2 2
MIRT663923 MAGEF1 MAGE family member F1 2 2
MIRT665882 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669051 CEP128 centrosomal protein 128 2 2
MIRT669711 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686812 SNX2 sorting nexin 2 2 4
MIRT689883 SOD2 superoxide dismutase 2 2 2
MIRT693274 GLRX2 glutaredoxin 2 2 4
MIRT697056 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703297 GID4 GID complex subunit 4 homolog 2 2
MIRT704087 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707719 CDC6 cell division cycle 6 2 2
MIRT708136 GK5 glycerol kinase 5 (putative) 2 2
MIRT709212 KLHL30 kelch like family member 30 2 2
MIRT710062 RWDD2A RWD domain containing 2A 2 2
MIRT712770 POU6F2 POU class 6 homeobox 2 2 2
MIRT715073 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715387 TADA3 transcriptional adaptor 3 2 2
MIRT717712 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548t Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-548t Cisplatin 5460033 NSC119875 approved sensitive cell line (W1)
hsa-mir-548t Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-548t Topotecan 60699 NSC609699 approved sensitive cell line (W1)
hsa-mir-548t Vincristine 5978 approved sensitive cell line (W1)
hsa-miR-548t-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (SW480, HCT-116)
hsa-miR-548t-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548t-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)

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