pre-miRNA Information
pre-miRNA hsa-mir-4271   
Genomic Coordinates chr3: 49274120 - 49274186
Description Homo sapiens miR-4271 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4271
Sequence 39| GGGGGAAGAAAAGGUGGGG |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30481495 1 COSMIC
COSN31532060 5 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs760829741 1 dbSNP
rs1277951968 2 dbSNP
rs189148716 3 dbSNP
rs757021935 4 dbSNP
rs1285201145 6 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol HSPB6   
Synonyms HEL55, Hsp20, PPP1R91
Description heat shock protein family B (small) member 6
Transcript NM_144617   
Expression
Putative miRNA Targets on HSPB6
3'UTR of HSPB6
(miRNA target sites are highlighted)
>HSPB6|NM_144617|3'UTR
   1 GAGGGGGCTGGGCCGCGCCCGCACCCCGGGAGCCTCCTCAGGCTCCCTCTATTAAAGCCGATCTGACTCCGCCCAGCCAG
  81 ATGTCCCGAGTGCGCCAAGGACTGTCCTCTCACCCACTCCTGGATTCTGCCCTGACCTCCATCCTGGACACTGCCTTGAT
 161 AACATAGACCCTTCCACTGACACCCTCGCTCTCACACCCCCTCCAGCTTTCCGACCCCACACCGACAACTCCCCGGCTTC
 241 CAGACCCTACCAGCACTACCCTAACCCTCAGCCGACAGTCTCAGCCCCACCGACCCACTTTCTTGGCATATAGCCCCACT
 321 TAAGACCCCTCCTCTACTTCCTTCTGAGTCCTCTACAAAGACATCCGGGTACTACATTTCCATCCCTTCCCTATTTTGAC
 401 ACCAAATTATGGTGTAGACAGCCCTCCCCCAACCCCAGGCCAGTCAGGCACAATCCCCCCACCCCCCAAACGTCCTGGAC
 481 TGCACAGACCTCCCACTCCAGACCATCCAGGCCTGGTTCCCAAGACCCGATCCTTCCCCTGCAACCAGACAGTCTACAAC
 561 TGCCCCCTCCAGCCCATTTTCTGCCGTGAAACCCCAGCCAGCCACACCAGACTCTGGAACCCTTTTTCGACTGCCCCAAC
 641 TCTTGGACACCAGGCCAACTAGAACACCCAACACCAAACTGTACAGACTCTCCCACCCCAACCTCCCCAGACTCTGCACG
 721 GATGTCCTAGGCCCCCTCCCCAACTCTAACCAGACCCCATCCCCCTAAGTCCCTTTGTCTTGACCCCCAAGTCTTCAACC
 801 AGATATCCTCGGCAACCCACCTCCCACCCTCCTCCTCTTCTCCTTCAAGACCCAACTGAGCACCCGCTCTGATTCCCCAC
 881 AGCCTTTCTCCCTGCCACCACTCCCTTAGTCTTTCCCAGGCTTACTCTCCCAATAAATGTGCTAGAGCTCTGCCAAAAAA
 961 AAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ggGGU----GGAAAAGAAGGGGg 5'
            |||    ||  | ||||||| 
Target 5' tcCCAAGACCCGATCCTTCCCCt 3'
518 - 540 147.00 -20.00
2
miRNA  3' ggGGUGGAAAAGAAGGGGg 5'
            || |||  |||||:|| 
Target 5' acCCTCCTCCTCTTCTCCt 3'
826 - 844 145.00 -22.40
3
miRNA  3' ggGGUGGAA-AAGAAGGGGg 5'
            |: ||||  ||||:||| 
Target 5' caCTCCCTTAGTCTTTCCCa 3'
899 - 918 141.00 -19.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN24306565 16 COSMIC
COSN30612414 44 COSMIC
COSN31522510 54 COSMIC
COSN16128197 158 COSMIC
COSN29624765 165 COSMIC
COSN26636570 189 COSMIC
COSN31544602 191 COSMIC
COSN21833889 241 COSMIC
COSN31611442 273 COSMIC
COSN31536850 287 COSMIC
COSN31590715 348 COSMIC
COSN20079581 443 COSMIC
COSN25752322 497 COSMIC
COSN25127866 692 COSMIC
COSN31537996 943 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1343075193 2 dbSNP
rs11549030 5 dbSNP
rs1442460841 6 dbSNP
rs1355859344 8 dbSNP
rs1326606674 17 dbSNP
rs1409111027 19 dbSNP
rs1406761837 20 dbSNP
rs573650486 21 dbSNP
rs1468333924 24 dbSNP
rs948120700 25 dbSNP
rs1178055832 27 dbSNP
rs1314701656 28 dbSNP
rs1471288925 35 dbSNP
rs1231328031 36 dbSNP
rs915786699 39 dbSNP
rs747183197 41 dbSNP
rs1462011195 42 dbSNP
rs1265599157 43 dbSNP
rs1202300059 45 dbSNP
rs1320868570 49 dbSNP
rs935930556 50 dbSNP
rs143062937 58 dbSNP
rs1223786218 59 dbSNP
rs1375111022 60 dbSNP
rs1234885034 68 dbSNP
rs1277358670 69 dbSNP
rs758747030 71 dbSNP
rs749062434 72 dbSNP
rs977131048 74 dbSNP
rs1338693245 75 dbSNP
rs932312452 81 dbSNP
rs1180472690 84 dbSNP
rs1468157569 86 dbSNP
rs1405192310 88 dbSNP
rs780027094 90 dbSNP
rs1402483512 91 dbSNP
rs756031781 93 dbSNP
rs1158193340 95 dbSNP
rs1445663811 101 dbSNP
rs955183707 103 dbSNP
rs750343113 106 dbSNP
rs922277516 107 dbSNP
rs989883233 120 dbSNP
rs1258798958 128 dbSNP
rs1182065864 132 dbSNP
rs1461266103 135 dbSNP
rs1190632844 138 dbSNP
rs571618832 143 dbSNP
rs963785723 145 dbSNP
rs1318174381 146 dbSNP
rs775724242 147 dbSNP
rs1238968121 148 dbSNP
rs751128090 153 dbSNP
rs1316913078 155 dbSNP
rs1450107875 156 dbSNP
rs763713538 162 dbSNP
rs748825335 165 dbSNP
rs1289327684 169 dbSNP
rs779789974 171 dbSNP
rs981256447 172 dbSNP
rs1343481402 177 dbSNP
rs762629966 179 dbSNP
rs1396350390 185 dbSNP
rs1441567864 188 dbSNP
rs149052927 191 dbSNP
rs1022857093 195 dbSNP
rs1297786533 197 dbSNP
rs370292442 200 dbSNP
rs951611601 201 dbSNP
rs1026288991 205 dbSNP
rs1444336624 211 dbSNP
rs1420909190 212 dbSNP
rs991915216 213 dbSNP
rs1486599201 214 dbSNP
rs1239847675 216 dbSNP
rs952038875 218 dbSNP
rs1003786289 223 dbSNP
rs554528232 234 dbSNP
rs1408735408 235 dbSNP
rs906552073 243 dbSNP
rs190135278 251 dbSNP
rs1472072834 252 dbSNP
rs897910588 259 dbSNP
rs1012322839 273 dbSNP
rs1462932234 274 dbSNP
rs1245823979 280 dbSNP
rs893859924 286 dbSNP
rs1054221925 287 dbSNP
rs1432769553 325 dbSNP
rs935814933 327 dbSNP
rs1008991593 332 dbSNP
rs1399643567 334 dbSNP
rs1276461973 335 dbSNP
rs1447103757 335 dbSNP
rs1239860435 336 dbSNP
rs1285704223 341 dbSNP
rs1289584139 344 dbSNP
rs1320477122 350 dbSNP
rs1218502786 361 dbSNP
rs1226090770 362 dbSNP
rs903111498 365 dbSNP
rs1358708183 367 dbSNP
rs1242211734 376 dbSNP
rs1487639508 380 dbSNP
rs1190873080 383 dbSNP
rs889385354 387 dbSNP
rs1315625984 395 dbSNP
rs1475319352 415 dbSNP
rs1164002840 419 dbSNP
rs137940999 421 dbSNP
rs1050660947 422 dbSNP
rs1247978445 425 dbSNP
rs1362678378 427 dbSNP
rs985127967 431 dbSNP
rs953280226 437 dbSNP
rs1430216320 439 dbSNP
rs1419244478 451 dbSNP
rs1296403367 454 dbSNP
rs932318411 458 dbSNP
rs1415585811 459 dbSNP
rs1283999880 460 dbSNP
rs1320412836 460 dbSNP
rs1029112773 461 dbSNP
rs1422808787 462 dbSNP
rs571906073 464 dbSNP
rs1054529461 466 dbSNP
rs1353601299 473 dbSNP
rs1213889589 475 dbSNP
rs1281805647 478 dbSNP
rs1485811721 485 dbSNP
rs540472813 487 dbSNP
rs1388660287 494 dbSNP
rs550100049 496 dbSNP
rs1471001148 498 dbSNP
rs1177562330 510 dbSNP
rs1379673973 520 dbSNP
rs1486015827 529 dbSNP
rs924341726 537 dbSNP
rs1377307674 544 dbSNP
rs1435589327 545 dbSNP
rs1333683192 546 dbSNP
rs1357645395 550 dbSNP
rs1444889305 552 dbSNP
rs1243470592 553 dbSNP
rs1280482615 560 dbSNP
rs1218811184 561 dbSNP
rs1376867339 564 dbSNP
rs1490041193 566 dbSNP
rs997129988 568 dbSNP
rs1292411027 574 dbSNP
rs762851078 585 dbSNP
rs933903307 586 dbSNP
rs867395643 591 dbSNP
rs1205014223 593 dbSNP
rs796908971 597 dbSNP
rs1437777636 598 dbSNP
rs1362977255 601 dbSNP
rs1195363108 607 dbSNP
rs1396976395 610 dbSNP
rs775220917 612 dbSNP
rs1272141599 621 dbSNP
rs942433916 624 dbSNP
rs866994188 628 dbSNP
rs765719966 629 dbSNP
rs1364978158 635 dbSNP
rs1304305376 636 dbSNP
rs1445230297 638 dbSNP
rs1427068762 640 dbSNP
rs538385175 641 dbSNP
rs567660573 648 dbSNP
rs1231959380 650 dbSNP
rs1353240058 681 dbSNP
rs1272545569 683 dbSNP
rs1214752015 687 dbSNP
rs1170253287 693 dbSNP
rs1257208477 697 dbSNP
rs1456230801 697 dbSNP
rs1429472306 698 dbSNP
rs1421287580 703 dbSNP
rs1196747802 704 dbSNP
rs34514071 711 dbSNP
rs1450942974 712 dbSNP
rs759986841 714 dbSNP
rs1479830714 716 dbSNP
rs1423359114 719 dbSNP
rs951554669 720 dbSNP
rs1025792660 724 dbSNP
rs1464452469 733 dbSNP
rs1268913806 737 dbSNP
rs1386669874 740 dbSNP
rs1321043196 742 dbSNP
rs982811361 750 dbSNP
rs1201540490 752 dbSNP
rs1431024510 754 dbSNP
rs1277257423 757 dbSNP
rs970998444 761 dbSNP
rs549421285 762 dbSNP
rs545863304 767 dbSNP
rs1234960189 771 dbSNP
rs776736053 784 dbSNP
rs1205041467 797 dbSNP
rs1355596370 804 dbSNP
rs771044163 810 dbSNP
rs527703570 811 dbSNP
rs1012164378 820 dbSNP
rs893912134 823 dbSNP
rs1308969005 834 dbSNP
rs1194471969 837 dbSNP
rs1262813071 845 dbSNP
rs1275402871 845 dbSNP
rs1190558475 851 dbSNP
rs915831989 852 dbSNP
rs991386663 855 dbSNP
rs1161909597 861 dbSNP
rs747215370 864 dbSNP
rs563771464 865 dbSNP
rs560090812 866 dbSNP
rs1338020666 869 dbSNP
rs1416201560 885 dbSNP
rs1313187980 896 dbSNP
rs920644887 897 dbSNP
rs551295145 904 dbSNP
rs1262489636 905 dbSNP
rs962115031 914 dbSNP
rs1217499932 915 dbSNP
rs773487464 915 dbSNP
rs533047061 916 dbSNP
rs933934889 921 dbSNP
rs1257314957 923 dbSNP
rs901055656 926 dbSNP
rs1356580026 930 dbSNP
rs1366111840 933 dbSNP
rs1173837351 937 dbSNP
rs1440814602 938 dbSNP
rs187186022 943 dbSNP
rs558290758 945 dbSNP
rs1039390373 947 dbSNP
rs1436215286 950 dbSNP
rs1302997397 952 dbSNP
rs111468214 955 dbSNP
rs1178027822 956 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545213. RNA binding protein: AGO2. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gggguggaaAAGAAGGGGg 5'
                   | ||||||| 
Target 5' ---------UCCUUCCCCu 3'
1 - 10
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545213
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / Control
Location of target site ENST00000592984.1 | 3UTR | UCCUUCCCCUGCAACCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
181 hsa-miR-4271 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT066209 MARCH9 membrane associated ring-CH-type finger 9 2 2
MIRT079367 CCDC137 coiled-coil domain containing 137 2 2
MIRT081183 MIDN midnolin 2 4
MIRT083278 ZCCHC3 zinc finger CCHC-type containing 3 2 6
MIRT086207 HOXD13 homeobox D13 2 2
MIRT133713 SKI SKI proto-oncogene 2 4
MIRT150653 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159166 NRBP1 nuclear receptor binding protein 1 2 2
MIRT160059 TET3 tet methylcytosine dioxygenase 3 2 4
MIRT180856 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT181931 MARK2 microtubule affinity regulating kinase 2 2 2
MIRT190628 BCL2L2-PABPN1 BCL2L2-PABPN1 readthrough 2 2
MIRT190654 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196107 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT263248 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT321168 EIF4H eukaryotic translation initiation factor 4H 2 2
MIRT338624 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT366301 GDI1 GDP dissociation inhibitor 1 2 4
MIRT375172 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 2
MIRT441488 NCEH1 neutral cholesterol ester hydrolase 1 2 2
MIRT442333 WNT9B Wnt family member 9B 2 2
MIRT443889 CNKSR3 CNKSR family member 3 2 2
MIRT445880 WBP1L WW domain binding protein 1 like 2 2
MIRT449312 MRO maestro 2 2
MIRT449844 BCL2L13 BCL2 like 13 2 2
MIRT450304 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT450515 EMX1 empty spiracles homeobox 1 2 2
MIRT451243 ZNF444 zinc finger protein 444 2 2
MIRT451713 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451792 TLR5 toll like receptor 5 2 2
MIRT451823 ALDH3B1 aldehyde dehydrogenase 3 family member B1 2 2
MIRT451906 ILK integrin linked kinase 2 2
MIRT452181 KIAA1456 KIAA1456 2 4
MIRT452242 TRAM1 translocation associated membrane protein 1 2 2
MIRT452544 ZNF467 zinc finger protein 467 2 2
MIRT452605 REPIN1 replication initiator 1 2 2
MIRT454505 ZFYVE27 zinc finger FYVE-type containing 27 2 2
MIRT454657 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT455354 KDM5C lysine demethylase 5C 2 2
MIRT455452 EPB41L4B erythrocyte membrane protein band 4.1 like 4B 2 2
MIRT455587 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT456501 PFKFB2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 2 2
MIRT456815 PIGP phosphatidylinositol glycan anchor biosynthesis class P 2 2
MIRT457425 NOL10 nucleolar protein 10 2 2
MIRT457468 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457660 SERINC1 serine incorporator 1 2 2
MIRT458231 NXPH3 neurexophilin 3 2 2
MIRT458374 ITM2C integral membrane protein 2C 2 2
MIRT458667 GPR35 G protein-coupled receptor 35 2 2
MIRT459665 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT459825 TPP1 tripeptidyl peptidase 1 2 2
MIRT460564 FEM1A fem-1 homolog A 2 2
MIRT460725 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT461121 RAB36 RAB36, member RAS oncogene family 2 2
MIRT461529 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461750 DDX11 DEAD/H-box helicase 11 2 2
MIRT462570 STS steroid sulfatase 2 2
MIRT462798 NTN1 netrin 1 2 2
MIRT463030 ZNF689 zinc finger protein 689 2 2
MIRT463991 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464684 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 2
MIRT465439 TP53 tumor protein p53 2 2
MIRT465512 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465649 TNPO2 transportin 2 2 10
MIRT465947 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 2
MIRT466028 TMEM189 transmembrane protein 189 2 2
MIRT468076 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 6
MIRT468131 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468498 SESN2 sestrin 2 2 2
MIRT468879 RREB1 ras responsive element binding protein 1 2 2
MIRT469318 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469558 RARA retinoic acid receptor alpha 2 2
MIRT469793 RAB15 RAB15, member RAS oncogene family 2 2
MIRT469896 PTRF caveolae associated protein 1 2 2
MIRT470235 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470808 PLXND1 plexin D1 2 2
MIRT471597 PAQR5 progestin and adipoQ receptor family member 5 2 10
MIRT471710 OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 2 2
MIRT471752 OGT O-linked N-acetylglucosamine (GlcNAc) transferase 2 2
MIRT472978 MRRF mitochondrial ribosome recycling factor 2 2
MIRT473538 MAX MYC associated factor X 2 2
MIRT473581 MAT2A methionine adenosyltransferase 2A 2 2
MIRT473970 LRRC58 leucine rich repeat containing 58 2 2
MIRT474223 LCOR ligand dependent nuclear receptor corepressor 2 4
MIRT474553 KLHDC3 kelch domain containing 3 2 2
MIRT474777 KIAA0895L KIAA0895 like 2 2
MIRT476042 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476438 GBA2 glucosylceramidase beta 2 2 2
MIRT477773 E2F3 E2F transcription factor 3 2 4
MIRT477946 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478782 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479320 VPS72 vacuolar protein sorting 72 homolog 2 2
MIRT480405 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480593 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT480963 BBC3 BCL2 binding component 3 2 2
MIRT481127 AZIN1 antizyme inhibitor 1 2 4
MIRT481444 ARRB2 arrestin beta 2 2 2
MIRT481687 AR androgen receptor 2 2
MIRT481730 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT482386 AEN apoptosis enhancing nuclease 2 2
MIRT482564 ABHD2 abhydrolase domain containing 2 2 2
MIRT482605 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483256 CITED4 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 2 4
MIRT483531 TAGLN2 transgelin 2 2 2
MIRT483840 UNC5B unc-5 netrin receptor B 2 4
MIRT483935 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484414 SNX19 sorting nexin 19 2 2
MIRT484487 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484609 SIX3 SIX homeobox 3 2 6
MIRT484703 RNF11 ring finger protein 11 2 2
MIRT485244 POGZ pogo transposable element derived with ZNF domain 2 2
MIRT485607 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT485965 RTBDN retbindin 2 2
MIRT487308 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487329 SREBF1 sterol regulatory element binding transcription factor 1 2 4
MIRT487410 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487607 C20orf96 chromosome 20 open reading frame 96 2 2
MIRT487689 CDK14 cyclin dependent kinase 14 2 2
MIRT487787 GPR20 G protein-coupled receptor 20 2 4
MIRT488026 ADO 2-aminoethanethiol dioxygenase 2 2
MIRT488476 B3GALNT2 beta-1,3-N-acetylgalactosaminyltransferase 2 2 2
MIRT488761 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489161 MRPL12 mitochondrial ribosomal protein L12 2 4
MIRT489529 MRE11A MRE11 homolog, double strand break repair nuclease 2 8
MIRT489774 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT489878 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT490094 FN3K fructosamine 3 kinase 2 2
MIRT490202 PKNOX2 PBX/knotted 1 homeobox 2 2 2
MIRT490283 ISL2 ISL LIM homeobox 2 2 2
MIRT490377 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491035 ALPK3 alpha kinase 3 2 2
MIRT491186 JUND JunD proto-oncogene, AP-1 transcription factor subunit 2 4
MIRT491766 ZNF385A zinc finger protein 385A 2 2
MIRT491888 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 2
MIRT491981 UNK unkempt family zinc finger 2 2
MIRT492400 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT493647 HDLBP high density lipoprotein binding protein 2 2
MIRT494010 DUSP9 dual specificity phosphatase 9 2 2
MIRT494167 CNOT6L CCR4-NOT transcription complex subunit 6 like 2 2
MIRT495712 PADI1 peptidyl arginine deiminase 1 2 2
MIRT496873 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT499175 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT501652 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT506645 MAPK1 mitogen-activated protein kinase 1 2 4
MIRT510590 TUBB2A tubulin beta 2A class IIa 2 6
MIRT511907 FKBP1A FK506 binding protein 1A 2 2
MIRT513063 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513104 DYNAP dynactin associated protein 2 2
MIRT521804 POM121C POM121 transmembrane nucleoporin C 2 2
MIRT523520 GLUL glutamate-ammonia ligase 2 2
MIRT525085 FRK fyn related Src family tyrosine kinase 2 2
MIRT530930 SCIN scinderin 2 2
MIRT533501 TRIM71 tripartite motif containing 71 2 2
MIRT538560 CECR2 CECR2, histone acetyl-lysine reader 2 2
MIRT544556 CSNK2A1 casein kinase 2 alpha 1 2 2
MIRT555912 ORMDL3 ORMDL sphingolipid biosynthesis regulator 3 2 2
MIRT560405 TMEM69 transmembrane protein 69 2 2
MIRT560664 RTN3 reticulon 3 2 2
MIRT564061 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT565504 SP1 Sp1 transcription factor 2 2
MIRT570014 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572321 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573229 TRIM21 tripartite motif containing 21 2 2
MIRT573487 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574137 MARVELD1 MARVEL domain containing 1 2 2
MIRT574323 ZNF703 zinc finger protein 703 2 2
MIRT620939 OSMR oncostatin M receptor 2 2
MIRT650080 MTL5 testis expressed metallothionein like protein 2 2
MIRT684553 ZNF708 zinc finger protein 708 2 2
MIRT685841 ANGEL1 angel homolog 1 2 2
MIRT688551 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT701985 MIER3 MIER family member 3 2 2
MIRT703899 EPT1 selenoprotein I 2 2
MIRT706388 MC2R melanocortin 2 receptor 2 2
MIRT707487 UGT2B4 UDP glucuronosyltransferase family 2 member B4 2 2
MIRT711885 INSIG2 insulin induced gene 2 2 2
MIRT719164 KIF6 kinesin family member 6 2 2
MIRT721294 C3orf36 chromosome 3 open reading frame 36 2 2
MIRT721775 ARL6IP4 ADP ribosylation factor like GTPase 6 interacting protein 4 2 2
MIRT723763 NKIRAS2 NFKB inhibitor interacting Ras like 2 2 2
MIRT725485 GPR26 G protein-coupled receptor 26 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miR-4271 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4271 Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (BGC823)
hsa-miR-4271 Platinum-based doublet chemotherapy sensitive High Lung Adenocarcinoma tissue
hsa-miR-4271 Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4271 Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PATU8988)
hsa-miR-4271 Cisplatin 5460033 NSC119875 approved resistant Low Tongue Squamous Cell Carcinoma cell line (CAL-27, SCC-9)
hsa-miR-4271 Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (H460)
hsa-miR-4271 Anlotinib 25017411 NSC832523 sensitive Low Non-Small Cell Lung Cancer cell line (A549, PDC, H460)
hsa-miR-4271 Gefitinib 123631 NSC715055 approved sensitive Low Non-Small Cell Lung Cancer cell line (A549, PDC, H460)
hsa-miR-4271 Icotinib 22024915 NSC800770 sensitive Low Non-Small Cell Lung Cancer cell line (A549, PDC, H460)
hsa-miR-4271 Erlotinib 176870 NSC718781 approved sensitive Low Non-Small Cell Lung Cancer cell line (A549, PDC, H460)
hsa-mir-4271 Cisplatin 5460033 NSC119875 approved resistant cell line (W1)
hsa-mir-4271 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-4271 Androstenedione+Anastrozole resistant cell line (MCF-7)
hsa-mir-4271 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-mir-4271 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-mir-4271 Cisplatin 5460033 NSC119875 approved sensitive cell line (BGC-823)
hsa-miR-4271 Cisplatin 5460033 NSC119875 approved resistant cell line (CAL-27) (cytosolic RNA)
hsa-miR-4271 Cisplatin 5460033 NSC119875 approved resistant cell line (CAL-27) (total RNA)
hsa-miR-4271 Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-4271 Platinum-based doublet chemotherapy sensitive tissue (lung adenocarcinoma)
hsa-miR-4271 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4271 Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM16)
hsa-miR-4271 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-4271 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)
hsa-miR-4271 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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