pre-miRNA Information
pre-miRNA hsa-mir-4747   
Genomic Coordinates chr19: 4932687 - 4932740
Description Homo sapiens miR-4747 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4747-5p
Sequence 1| AGGGAAGGAGGCUUGGUCUUAG |22
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs560927363 4 dbSNP
rs1471226927 10 dbSNP
rs763137545 12 dbSNP
rs767337154 15 dbSNP
rs775298039 16 dbSNP
rs760472311 19 dbSNP
rs1207950315 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol HSPB6   
Synonyms HEL55, Hsp20, PPP1R91
Description heat shock protein family B (small) member 6
Transcript NM_144617   
Expression
Putative miRNA Targets on HSPB6
3'UTR of HSPB6
(miRNA target sites are highlighted)
>HSPB6|NM_144617|3'UTR
   1 GAGGGGGCTGGGCCGCGCCCGCACCCCGGGAGCCTCCTCAGGCTCCCTCTATTAAAGCCGATCTGACTCCGCCCAGCCAG
  81 ATGTCCCGAGTGCGCCAAGGACTGTCCTCTCACCCACTCCTGGATTCTGCCCTGACCTCCATCCTGGACACTGCCTTGAT
 161 AACATAGACCCTTCCACTGACACCCTCGCTCTCACACCCCCTCCAGCTTTCCGACCCCACACCGACAACTCCCCGGCTTC
 241 CAGACCCTACCAGCACTACCCTAACCCTCAGCCGACAGTCTCAGCCCCACCGACCCACTTTCTTGGCATATAGCCCCACT
 321 TAAGACCCCTCCTCTACTTCCTTCTGAGTCCTCTACAAAGACATCCGGGTACTACATTTCCATCCCTTCCCTATTTTGAC
 401 ACCAAATTATGGTGTAGACAGCCCTCCCCCAACCCCAGGCCAGTCAGGCACAATCCCCCCACCCCCCAAACGTCCTGGAC
 481 TGCACAGACCTCCCACTCCAGACCATCCAGGCCTGGTTCCCAAGACCCGATCCTTCCCCTGCAACCAGACAGTCTACAAC
 561 TGCCCCCTCCAGCCCATTTTCTGCCGTGAAACCCCAGCCAGCCACACCAGACTCTGGAACCCTTTTTCGACTGCCCCAAC
 641 TCTTGGACACCAGGCCAACTAGAACACCCAACACCAAACTGTACAGACTCTCCCACCCCAACCTCCCCAGACTCTGCACG
 721 GATGTCCTAGGCCCCCTCCCCAACTCTAACCAGACCCCATCCCCCTAAGTCCCTTTGTCTTGACCCCCAAGTCTTCAACC
 801 AGATATCCTCGGCAACCCACCTCCCACCCTCCTCCTCTTCTCCTTCAAGACCCAACTGAGCACCCGCTCTGATTCCCCAC
 881 AGCCTTTCTCCCTGCCACCACTCCCTTAGTCTTTCCCAGGCTTACTCTCCCAATAAATGTGCTAGAGCTCTGCCAAAAAA
 961 AAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' gaUUCU-GGUUCGGAGGAAGGGa 5'
            |||| ||:|   |||||||| 
Target 5' ccAAGACCCGA---TCCTTCCCc 3'
520 - 539 161.00 -20.70
2
miRNA  3' gauucuGGUUCGGAGGAAGGGa 5'
                |||  :| ||||||| 
Target 5' acatttCCA--TC-CCTTCCCt 3'
374 - 392 143.00 -16.50
3
miRNA  3' gauucUGGUUCGG-----AGGAAGGGa 5'
               ||||  ||     ||:||||| 
Target 5' ctgccACCACTCCCTTAGTCTTTCCCa 3'
892 - 918 137.00 -14.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN24306565 16 COSMIC
COSN30612414 44 COSMIC
COSN31522510 54 COSMIC
COSN16128197 158 COSMIC
COSN29624765 165 COSMIC
COSN26636570 189 COSMIC
COSN31544602 191 COSMIC
COSN21833889 241 COSMIC
COSN31611442 273 COSMIC
COSN31536850 287 COSMIC
COSN31590715 348 COSMIC
COSN20079581 443 COSMIC
COSN25752322 497 COSMIC
COSN25127866 692 COSMIC
COSN31537996 943 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1343075193 2 dbSNP
rs11549030 5 dbSNP
rs1442460841 6 dbSNP
rs1355859344 8 dbSNP
rs1326606674 17 dbSNP
rs1409111027 19 dbSNP
rs1406761837 20 dbSNP
rs573650486 21 dbSNP
rs1468333924 24 dbSNP
rs948120700 25 dbSNP
rs1178055832 27 dbSNP
rs1314701656 28 dbSNP
rs1471288925 35 dbSNP
rs1231328031 36 dbSNP
rs915786699 39 dbSNP
rs747183197 41 dbSNP
rs1462011195 42 dbSNP
rs1265599157 43 dbSNP
rs1202300059 45 dbSNP
rs1320868570 49 dbSNP
rs935930556 50 dbSNP
rs143062937 58 dbSNP
rs1223786218 59 dbSNP
rs1375111022 60 dbSNP
rs1234885034 68 dbSNP
rs1277358670 69 dbSNP
rs758747030 71 dbSNP
rs749062434 72 dbSNP
rs977131048 74 dbSNP
rs1338693245 75 dbSNP
rs932312452 81 dbSNP
rs1180472690 84 dbSNP
rs1468157569 86 dbSNP
rs1405192310 88 dbSNP
rs780027094 90 dbSNP
rs1402483512 91 dbSNP
rs756031781 93 dbSNP
rs1158193340 95 dbSNP
rs1445663811 101 dbSNP
rs955183707 103 dbSNP
rs750343113 106 dbSNP
rs922277516 107 dbSNP
rs989883233 120 dbSNP
rs1258798958 128 dbSNP
rs1182065864 132 dbSNP
rs1461266103 135 dbSNP
rs1190632844 138 dbSNP
rs571618832 143 dbSNP
rs963785723 145 dbSNP
rs1318174381 146 dbSNP
rs775724242 147 dbSNP
rs1238968121 148 dbSNP
rs751128090 153 dbSNP
rs1316913078 155 dbSNP
rs1450107875 156 dbSNP
rs763713538 162 dbSNP
rs748825335 165 dbSNP
rs1289327684 169 dbSNP
rs779789974 171 dbSNP
rs981256447 172 dbSNP
rs1343481402 177 dbSNP
rs762629966 179 dbSNP
rs1396350390 185 dbSNP
rs1441567864 188 dbSNP
rs149052927 191 dbSNP
rs1022857093 195 dbSNP
rs1297786533 197 dbSNP
rs370292442 200 dbSNP
rs951611601 201 dbSNP
rs1026288991 205 dbSNP
rs1444336624 211 dbSNP
rs1420909190 212 dbSNP
rs991915216 213 dbSNP
rs1486599201 214 dbSNP
rs1239847675 216 dbSNP
rs952038875 218 dbSNP
rs1003786289 223 dbSNP
rs554528232 234 dbSNP
rs1408735408 235 dbSNP
rs906552073 243 dbSNP
rs190135278 251 dbSNP
rs1472072834 252 dbSNP
rs897910588 259 dbSNP
rs1012322839 273 dbSNP
rs1462932234 274 dbSNP
rs1245823979 280 dbSNP
rs893859924 286 dbSNP
rs1054221925 287 dbSNP
rs1432769553 325 dbSNP
rs935814933 327 dbSNP
rs1008991593 332 dbSNP
rs1399643567 334 dbSNP
rs1276461973 335 dbSNP
rs1447103757 335 dbSNP
rs1239860435 336 dbSNP
rs1285704223 341 dbSNP
rs1289584139 344 dbSNP
rs1320477122 350 dbSNP
rs1218502786 361 dbSNP
rs1226090770 362 dbSNP
rs903111498 365 dbSNP
rs1358708183 367 dbSNP
rs1242211734 376 dbSNP
rs1487639508 380 dbSNP
rs1190873080 383 dbSNP
rs889385354 387 dbSNP
rs1315625984 395 dbSNP
rs1475319352 415 dbSNP
rs1164002840 419 dbSNP
rs137940999 421 dbSNP
rs1050660947 422 dbSNP
rs1247978445 425 dbSNP
rs1362678378 427 dbSNP
rs985127967 431 dbSNP
rs953280226 437 dbSNP
rs1430216320 439 dbSNP
rs1419244478 451 dbSNP
rs1296403367 454 dbSNP
rs932318411 458 dbSNP
rs1415585811 459 dbSNP
rs1283999880 460 dbSNP
rs1320412836 460 dbSNP
rs1029112773 461 dbSNP
rs1422808787 462 dbSNP
rs571906073 464 dbSNP
rs1054529461 466 dbSNP
rs1353601299 473 dbSNP
rs1213889589 475 dbSNP
rs1281805647 478 dbSNP
rs1485811721 485 dbSNP
rs540472813 487 dbSNP
rs1388660287 494 dbSNP
rs550100049 496 dbSNP
rs1471001148 498 dbSNP
rs1177562330 510 dbSNP
rs1379673973 520 dbSNP
rs1486015827 529 dbSNP
rs924341726 537 dbSNP
rs1377307674 544 dbSNP
rs1435589327 545 dbSNP
rs1333683192 546 dbSNP
rs1357645395 550 dbSNP
rs1444889305 552 dbSNP
rs1243470592 553 dbSNP
rs1280482615 560 dbSNP
rs1218811184 561 dbSNP
rs1376867339 564 dbSNP
rs1490041193 566 dbSNP
rs997129988 568 dbSNP
rs1292411027 574 dbSNP
rs762851078 585 dbSNP
rs933903307 586 dbSNP
rs867395643 591 dbSNP
rs1205014223 593 dbSNP
rs796908971 597 dbSNP
rs1437777636 598 dbSNP
rs1362977255 601 dbSNP
rs1195363108 607 dbSNP
rs1396976395 610 dbSNP
rs775220917 612 dbSNP
rs1272141599 621 dbSNP
rs942433916 624 dbSNP
rs866994188 628 dbSNP
rs765719966 629 dbSNP
rs1364978158 635 dbSNP
rs1304305376 636 dbSNP
rs1445230297 638 dbSNP
rs1427068762 640 dbSNP
rs538385175 641 dbSNP
rs567660573 648 dbSNP
rs1231959380 650 dbSNP
rs1353240058 681 dbSNP
rs1272545569 683 dbSNP
rs1214752015 687 dbSNP
rs1170253287 693 dbSNP
rs1257208477 697 dbSNP
rs1456230801 697 dbSNP
rs1429472306 698 dbSNP
rs1421287580 703 dbSNP
rs1196747802 704 dbSNP
rs34514071 711 dbSNP
rs1450942974 712 dbSNP
rs759986841 714 dbSNP
rs1479830714 716 dbSNP
rs1423359114 719 dbSNP
rs951554669 720 dbSNP
rs1025792660 724 dbSNP
rs1464452469 733 dbSNP
rs1268913806 737 dbSNP
rs1386669874 740 dbSNP
rs1321043196 742 dbSNP
rs982811361 750 dbSNP
rs1201540490 752 dbSNP
rs1431024510 754 dbSNP
rs1277257423 757 dbSNP
rs970998444 761 dbSNP
rs549421285 762 dbSNP
rs545863304 767 dbSNP
rs1234960189 771 dbSNP
rs776736053 784 dbSNP
rs1205041467 797 dbSNP
rs1355596370 804 dbSNP
rs771044163 810 dbSNP
rs527703570 811 dbSNP
rs1012164378 820 dbSNP
rs893912134 823 dbSNP
rs1308969005 834 dbSNP
rs1194471969 837 dbSNP
rs1262813071 845 dbSNP
rs1275402871 845 dbSNP
rs1190558475 851 dbSNP
rs915831989 852 dbSNP
rs991386663 855 dbSNP
rs1161909597 861 dbSNP
rs747215370 864 dbSNP
rs563771464 865 dbSNP
rs560090812 866 dbSNP
rs1338020666 869 dbSNP
rs1416201560 885 dbSNP
rs1313187980 896 dbSNP
rs920644887 897 dbSNP
rs551295145 904 dbSNP
rs1262489636 905 dbSNP
rs962115031 914 dbSNP
rs1217499932 915 dbSNP
rs773487464 915 dbSNP
rs533047061 916 dbSNP
rs933934889 921 dbSNP
rs1257314957 923 dbSNP
rs901055656 926 dbSNP
rs1356580026 930 dbSNP
rs1366111840 933 dbSNP
rs1173837351 937 dbSNP
rs1440814602 938 dbSNP
rs187186022 943 dbSNP
rs558290758 945 dbSNP
rs1039390373 947 dbSNP
rs1436215286 950 dbSNP
rs1302997397 952 dbSNP
rs111468214 955 dbSNP
rs1178027822 956 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545213. RNA binding protein: AGO2. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' gauucugguucggAGGAAGGGa 5'
                       |||||||| 
Target 5' -------------UCCUUCCCc 3'
1 - 9
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545213
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / Control
Location of target site ENST00000592984.1 | 3UTR | UCCUUCCCCUGCAACCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
215 hsa-miR-4747-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT061689 BTG2 BTG anti-proliferation factor 2 2 2
MIRT062834 BCL7A BCL tumor suppressor 7A 2 2
MIRT079371 CCDC137 coiled-coil domain containing 137 2 2
MIRT081190 MIDN midnolin 2 4
MIRT081724 ZNF507 zinc finger protein 507 2 2
MIRT110565 ZMYND11 zinc finger MYND-type containing 11 2 2
MIRT133724 SKI SKI proto-oncogene 2 4
MIRT146689 MINK1 misshapen like kinase 1 2 2
MIRT150676 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159196 NRBP1 nuclear receptor binding protein 1 2 2
MIRT180865 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT190659 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196111 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT232390 SP1 Sp1 transcription factor 2 2
MIRT331070 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT338632 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT407441 CTDSP1 CTD small phosphatase 1 2 2
MIRT444276 NKX6-1 NK6 homeobox 1 2 2
MIRT444834 PDE6D phosphodiesterase 6D 2 2
MIRT445452 EXT1 exostosin glycosyltransferase 1 2 2
MIRT445644 NPY4R neuropeptide Y receptor Y4 2 2
MIRT446157 RPL12 ribosomal protein L12 2 2
MIRT446608 HIP1 huntingtin interacting protein 1 2 2
MIRT447108 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT449314 MRO maestro 2 2
MIRT450305 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT451245 ZNF444 zinc finger protein 444 2 2
MIRT451714 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451908 ILK integrin linked kinase 2 2
MIRT452183 KIAA1456 KIAA1456 2 2
MIRT452610 REPIN1 replication initiator 1 2 2
MIRT453422 GLG1 golgi glycoprotein 1 2 2
MIRT454006 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT455072 ARHGAP39 Rho GTPase activating protein 39 2 2
MIRT455319 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT455357 KDM5C lysine demethylase 5C 2 2
MIRT455589 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT455711 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT455860 TMEM254 transmembrane protein 254 2 2
MIRT455919 RAPGEF1 Rap guanine nucleotide exchange factor 1 2 2
MIRT455946 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT456935 LRP10 LDL receptor related protein 10 2 2
MIRT457223 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT457431 NOL10 nucleolar protein 10 2 2
MIRT457470 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457907 ZNF212 zinc finger protein 212 2 2
MIRT458046 TSEN54 tRNA splicing endonuclease subunit 54 2 2
MIRT458073 RNLS renalase, FAD dependent amine oxidase 2 2
MIRT458234 NXPH3 neurexophilin 3 2 2
MIRT458307 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458378 ITM2C integral membrane protein 2C 2 2
MIRT458967 ZNF436 zinc finger protein 436 2 2
MIRT459099 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT459446 TMEM37 transmembrane protein 37 2 2
MIRT459671 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT460727 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT460744 SRP14 signal recognition particle 14 2 2
MIRT461531 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461752 DDX11 DEAD/H-box helicase 11 2 2
MIRT461837 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT462019 RIF1 replication timing regulatory factor 1 2 2
MIRT462631 PHF5A PHD finger protein 5A 2 2
MIRT462772 ZNF8 zinc finger protein 8 2 2
MIRT463032 ZNF689 zinc finger protein 689 2 2
MIRT463886 WNT7B Wnt family member 7B 2 2
MIRT463995 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464371 URM1 ubiquitin related modifier 1 2 2
MIRT465342 TPM3 tropomyosin 3 2 4
MIRT465515 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465602 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT465697 TNPO2 transportin 2 2 10
MIRT466988 SSRP1 structure specific recognition protein 1 2 4
MIRT467630 SLC7A5 solute carrier family 7 member 5 2 2
MIRT468132 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468322 SF3B3 splicing factor 3b subunit 3 2 2
MIRT468502 SESN2 sestrin 2 2 2
MIRT468881 RREB1 ras responsive element binding protein 1 2 2
MIRT469322 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469562 RARA retinoic acid receptor alpha 2 2
MIRT469898 PTRF caveolae associated protein 1 2 2
MIRT470045 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT470068 PTGES2 prostaglandin E synthase 2 2 2
MIRT470238 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470390 PPP1R16B protein phosphatase 1 regulatory subunit 16B 2 2
MIRT470500 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT470689 POLR2D RNA polymerase II subunit D 2 2
MIRT470704 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471083 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT472482 NACC2 NACC family member 2 2 2
MIRT473583 MAT2A methionine adenosyltransferase 2A 2 2
MIRT474554 KLHDC3 kelch domain containing 3 2 2
MIRT474651 KLF13 Kruppel like factor 13 2 2
MIRT474843 KHSRP KH-type splicing regulatory protein 2 2
MIRT474934 KCTD15 potassium channel tetramerization domain containing 15 2 2
MIRT475573 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 2
MIRT476045 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476080 GRB2 growth factor receptor bound protein 2 2 2
MIRT476440 GBA2 glucosylceramidase beta 2 2 2
MIRT476764 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT478785 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479287 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT479505 CDH6 cadherin 6 2 2
MIRT479732 CCND1 cyclin D1 2 6
MIRT480352 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480407 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480859 BHLHB9 basic helix-loop-helix family member b9 2 2
MIRT481445 ARRB2 arrestin beta 2 2 2
MIRT481732 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT481824 AP2M1 adaptor related protein complex 2 mu 1 subunit 2 2
MIRT482566 ABHD2 abhydrolase domain containing 2 2 2
MIRT482607 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483144 SYCE1L synaptonemal complex central element protein 1 like 2 2
MIRT483214 APOA1 apolipoprotein A1 2 6
MIRT483878 TGIF1 TGFB induced factor homeobox 1 2 2
MIRT483917 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT483939 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484420 SNX19 sorting nexin 19 2 2
MIRT484489 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484612 SIX3 SIX homeobox 3 2 6
MIRT484705 RNF11 ring finger protein 11 2 2
MIRT485107 SHISA6 shisa family member 6 2 2
MIRT485354 MYO1C myosin IC 2 4
MIRT485609 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT487311 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487417 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487695 CDK14 cyclin dependent kinase 14 2 2
MIRT487791 GPR20 G protein-coupled receptor 20 2 4
MIRT488042 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT488058 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT488237 DNLZ DNL-type zinc finger 2 4
MIRT488764 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489401 TUBB2A tubulin beta 2A class IIa 2 2
MIRT489777 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490099 FN3K fructosamine 3 kinase 2 2
MIRT490290 ISL2 ISL LIM homeobox 2 2 2
MIRT490378 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491329 GFER growth factor, augmenter of liver regeneration 2 2
MIRT491435 MSX2 msh homeobox 2 2 2
MIRT491769 ZNF385A zinc finger protein 385A 2 2
MIRT491922 WNK2 WNK lysine deficient protein kinase 2 2 2
MIRT491983 UNK unkempt family zinc finger 2 2
MIRT492228 SLC48A1 solute carrier family 48 member 1 2 2
MIRT492404 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT492767 PDGFB platelet derived growth factor subunit B 2 2
MIRT492966 NCS1 neuronal calcium sensor 1 2 2
MIRT493295 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT493650 HDLBP high density lipoprotein binding protein 2 2
MIRT493913 FAM127B retrotransposon Gag like 8A 2 4
MIRT495601 NKX2-5 NK2 homeobox 5 2 2
MIRT496875 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT498514 MYH14 myosin heavy chain 14 2 2
MIRT499178 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT502143 KIF5B kinesin family member 5B 2 8
MIRT502692 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT508460 HOXB6 homeobox B6 2 4
MIRT510430 ZNF207 zinc finger protein 207 2 6
MIRT511837 GPATCH8 G-patch domain containing 8 2 4
MIRT512368 CPM carboxypeptidase M 2 2
MIRT512506 BTBD19 BTB domain containing 19 2 2
MIRT513065 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513267 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 2 4
MIRT513575 EVX1 even-skipped homeobox 1 2 2
MIRT515051 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515790 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT521657 PRKD3 protein kinase D3 2 2
MIRT522679 LUZP1 leucine zipper protein 1 2 6
MIRT528845 RAB32 RAB32, member RAS oncogene family 2 2
MIRT533569 TOR1AIP1 torsin 1A interacting protein 1 2 2
MIRT543738 DHCR7 7-dehydrocholesterol reductase 2 2
MIRT544295 TSPYL1 TSPY like 1 2 2
MIRT544857 MYH2 myosin heavy chain 2 2 4
MIRT557323 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT560522 TMEM98 transmembrane protein 98 2 2
MIRT561565 SLC6A9 solute carrier family 6 member 9 2 2
MIRT562374 ERI2 ERI1 exoribonuclease family member 2 2 2
MIRT565780 SEMA6D semaphorin 6D 2 2
MIRT569548 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT569944 PRRT2 proline rich transmembrane protein 2 2 2
MIRT570016 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572163 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT572322 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573495 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574139 MARVELD1 MARVEL domain containing 1 2 2
MIRT609449 CCDC149 coiled-coil domain containing 149 2 2
MIRT610619 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT623355 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT629854 ACOX1 acyl-CoA oxidase 1 2 2
MIRT630516 CDC73 cell division cycle 73 2 2
MIRT632535 PSMB2 proteasome subunit beta 2 2 2
MIRT633975 SLC35E2 solute carrier family 35 member E2 2 2
MIRT636408 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 2 2
MIRT641722 LTBR lymphotoxin beta receptor 2 2
MIRT642661 RGS6 regulator of G protein signaling 6 2 2
MIRT649649 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT650367 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT651355 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT664840 HUS1 HUS1 checkpoint clamp component 2 2
MIRT667322 MYH9 myosin heavy chain 9 2 2
MIRT670680 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT674922 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT675919 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT676493 GJD3 gap junction protein delta 3 2 2
MIRT680162 ZDHHC20 zinc finger DHHC-type containing 20 2 2
MIRT688008 GSN gelsolin 2 2
MIRT688997 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT700337 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT701344 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT703519 FKBP15 FK506 binding protein 15 2 2
MIRT703901 EPT1 selenoprotein I 2 2
MIRT705565 ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 2 2
MIRT709709 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 2 2
MIRT713108 TMBIM4 transmembrane BAX inhibitor motif containing 4 2 2
MIRT718426 ZNF85 zinc finger protein 85 2 2
MIRT719236 CYSLTR2 cysteinyl leukotriene receptor 2 2 2
MIRT719326 STAC SH3 and cysteine rich domain 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4747 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4747-5p Temozolomide 5394 NSC362856 approved sensitive cell line (U251)
hsa-miR-4747-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4747-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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