miRTarBase - #MIRT572877


—
pre-miRNA Information
pre-miRNA hsa-mir-1208   
Genomic Coordinates chr8: 128150116 - 128150188
Synonyms MIRN1208, hsa-mir-1208, MIR1208
Description Homo sapiens miR-1208 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1208
Sequence 12| UCACUGUUCAGACAGGCGGA |31
Evidence Experimental
Experiments Northern
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs756433811 2 dbSNP
rs780440181 3 dbSNP
rs1380328961 4 dbSNP
rs747737307 8 dbSNP
rs771811651 10 dbSNP
rs1350004170 13 dbSNP
rs375652780 17 dbSNP
rs552306924 18 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol OPHN1   
Synonyms ARHGAP41, MRX60, OPN1
Description oligophrenin 1
Transcript NM_002547   
Expression
Putative miRNA Targets on OPHN1
3'UTR of OPHN1
(miRNA target sites are highlighted)		 
>OPHN1|NM_002547|3'UTR
   1 GGCTACAGGTTTTAAAAGCCTTGGCCTCAGAGGACCCTTTCCAGGTTCTGAAAGAGTCTTTCTTCTTCAAACCTTTGTGT
  81 GCGGAGTCATTTTGTGTTGAAGAGCAGCTCCTTCCTAGCCTTGCACTTTCAGACTCTCTCTGGGAGGCCATAAAATAAGG
 161 AGCATATGTCCTAGACAGGTGTTTATATCTCCTTTGTATTCTGTCTTCATCCCCTCAGAAGGTCTGTTTTGAGTTCCTAT
 241 AACACTGTGAAGAGCTGGACTCCCTCAAGCCAGACTCTGCCAAAACCAAGATATCCACTTACCTGAGTTGAAGAGGGGAG
 321 CTCAGTTTTCAACTCTTCCCTGAACTTCCTGCTTCCTCAGAGGGCCATTGAACTCTGAGAGATTTGGGGCTAAAGACTGA
 401 TCTCAGGGGTCTTACCTTGAACTGAAGGCCACTTGAGTTGGGGCCATTGCTTACCTTGGTTGGAAGGGAATAGAAATGTT
 481 TGCTGAACATTGGAGAATCTCAACATGTCTCCTACTGAGGATATGGACACTGGTGCCATGTCAGCGCTCTGGTGCTGCAG
 561 TATGTTGCCAAGAGCCCGTCTGCTCCTGCGAGGCTATGAGTGGGATGAGTGATGCCCCCACAGCACCTCCATGTGGACTT
 641 AGGAAGGTGGCCTTCCTGCTGTTACATGCAGCCACTTAGGACAAATCTGCAAAGCATGTTTTGCATGTAAAAGCCTAGGT
 721 CTATTTGGATTATTCTTTCTCCTTTTTTTTGACAGCTTCCTGTCAAGCAATCAAGAAACAAACAAAAGCTGAACACATTT
 801 CTTTTTAAAAAAAGGAGACTGTGTTTGGTCCTGTAGGAGTTCTATTTTGGGGTCAAATGCTAGAAAAATTGTTAAGGTGG
 881 ATTGAGGCCAGGCAGCTGTCACTGCTGCTTCATGTTTGCCTTCTGCACATAAACTCTTTTATCTCCTGAAAAAAGCAGTT
 961 CTTAACCCAGTGTCCATGGACTCAGAAACTCCATGATGCCCCTGAGATGGTATGCACAATTCCATGACAATATGCCCTTT
1041 CTGGGGAGATAGTCCATAATGTTCTGCTAAATTTCAAATGGGCTCGTGACCCAAAAAAGTCAAGAACCACAGCACTTGAG
1121 TAAAATACTCTTTTTACAATCCATATAAGCCCTTGATTGGAAGGGCTTTTCAAAATCATTTAGTCTAACAACTGCCCAGT
1201 TTCCAGTCGGGGGAACTGAGGCAGAGCAAGGTAGTGATCACACCAGTACAAGATCTCAGGTCCCAGGCTCCTATGCAAGT
1281 TTTTTTTCCCCATTATATCACACTTATCTAGCAAGGGACCTTGTGGTTTGTGGCTTTAGTGGCCATCATTTCTGGGGGTT
1361 GGCTTTTACCCTTTTTCTTGAATATTTGCCACCAAGTGAAAAATGTTAGGACATAAACCCTTGCCAGGTCCCTTTCATTT
1441 GCTATCTCTATTATTGGAAAGGACCTAAAAATTGGTGTAATGGGGCAGAAATCTGAGGAATGGACATTTCTAATTCCTGT
1521 TTGTTGAAGGGAAGTTGCTGGAAAGAGCATCAGTACTTGTTTCTATGCAGATGCCTGGGCCGTAGCTTGTCTGTAGCGTC
1601 TGTATAATTATAATGTTGCCCAGTGTGAGGGAAAGAGCTTTCCTACTTGCACTCTTCTACCAAGGCCCTGTTAGTGCACT
1681 GATTATAGTACTGACAGATAAACCTAGATAAAGAGATAGAGAGTGAGTACATGCACACTCATGTGCAAACCCACTCAGAG
1761 ATGCATTTGGAACAGTGCTACTGAAAGGCAGTAGTCATTTTCAAGACTGAATTCCAAACATGGTTTATTGGTGAGTTAGG
1841 AACATGTAAGGCCAAGTACACTGAGAGCCTTTTTGAAAGTAATTGAGTGGAAACTTGATGCCATTCTAAATCAAGGCATA
1921 TCCAGGTGGCCCGGTTGAACTCACTCCACTGTACCCAGTCTCAAAGGCCAGGTTGCTAAGAAACCAGGAGTAAAAGAGTC
2001 AAGTGACCATCATTTCACCTGCTGCTTGCCCCCAATAGTAGTCTCTGTGAGGCCTTACTGACCTCACCTAGGAAGTGATT
2081 TTTGAGCCCTTGTTTCAGGGCTGTGGCCTCCCTGCTCTATCCTGAATAAAGCAGACAGGTGTGCAGATTTTGGCCATGAA
2161 AGCATGGCTAATAGGGCCACAGTCCCTTTAAAGAAACATGGTTTGACTCTGGTTTTCTTGGGGGAAAATACCACAATCAC
2241 CGATGCAAACATTGGAAGATTATTGAGAGCCCTAGAAAGCTGCTGTGATCCCAGTAGAAAATATGTCCCAGAAATGTCAT
2321 GAGATTGCTGTGTGTTGCCTGGGACACAGATCAAGGGCCTATCTTGGAGAGCTGGGGACCAGCAGTCTGCCTGGAGGCCA
2401 GGGAGCAGTGGCTGAGTAGCTCTGCCTTTGCTCTGGTCTATACCTTAAGAATGCCAAAGAATGAATTTCAACGCCTGCCT
2481 TTGGCACTCTGACTTAAAGTGCAAAAAGCTTCTGTGGCGAGGCATGCTATCATGGAATGAGACTGGCTTGCCCTAGGCTT
2561 AATGGATGGGCAGTCATTTTGCAGAGGCTATGGGAAGAGGGTGATAATAGAAGAGTGGCAGCTATAGGAAATTATCAACA
2641 TACCTTGGCCAGCAAGTTAGAGAATCTGGCAATGGATGAACTGAAAGTGATGAACTGGCAGGGATAACAAAGAACCTAAC
2721 ATTTATTAAGCACGTATTTATTAACTGCTCAGTGTTTCATATTCATGCAAGTATTCTCATTTTACAGAGAAAGAAATTAT
2801 GGCCCAGGGGGCTAAAGTAAACAACTCAAGGGCACATAGAAAGTAAATAAAAGGACTGTGATTTGAATCCAGGCCACTCT
2881 TAGCCCATGCTGTTTTCCCTTTGCCACACTGTGGTAGGTGTTTGAACAGAGGCCACATTACTAGAGTTGGCATGACTCTT
2961 GACTCTTGCCTGCCTAACAAAATATTGAAAGGCAAACATTTGAAGGAGGGAGGGGGTGCAGGTTCAGTTTATATGGAAAT
3041 GCAAACTGGGCTGGAAGATATTCCTGAGTTAGGCTTTCTCTTCATATTCAGCTTGCACATTTGGTAATGTTTTTAAGATG
3121 ATCATCTAATTTTATTTTGTGAAGTGAAGGATTTGTGTTTTAGTTGGCAGTTGTTAAGTCCTTGGCTTGCCATTTTTCAA
3201 AAAGTAAAAAGGTCCTCACAGGTGTCTCCATACTTCGCCAAGGTTGTAGCATGGGCAGTTTCAGTTTCAGCCTAAGAGAC
3281 TGGTGACATCCACAAATGCAGTTTTAGAAGCAGAAAAGGTCTTGGTGCCTCTGCAGTACTTGATGTATTGGGGTCAAATC
3361 TCTACAAATTTTTCTGTGGTGATAGCAAAATCAAGAGATGGCTTACAAAAAGAAATATTGAATTTTTATTTTTGAAGTTT
3441 TTGTTTTTTAAAAGGTTGGGGGTGTTCAGCCACTGAGGGACAAAACTTAGCATCTAATTTCAATTATAGTGTCATGCAGA
3521 GTATTTCTAAAGTAATTGGTTATCATGGGAAAGTATTCTCTTTTCAAGAAGTTCTTTGATTCTGTAATAACTAGAACAAA
3601 TAAAGTAGTAAAAGAAGAAATAGTTCTGTGACTAGGAAAAAATTGCTTTTGAGAGAACATAGATCAATTATACTACTTCT
3681 AAGGTAGCTGCAGATAAGTGGCCTTGACACATTACAAGCCTGGAAAAAAACATCAGAAATAATAAAAAATTTCAGAGAGA
3761 ATCAAGATACCTTTTTTTTTCTTTTTTTTTTCTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCA
3841 GGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCC
3921 AGTGCTATCCCTCCCCCCTCCCCCGACCCCACCACAGTCCCCAGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTC
4001 ATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTACTGAGAATGATGGT
4081 TTCCAATTTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTGTATATGT
4161 GCCACATTTTCTTAATCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCGCA
4241 ATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATACTCATTTGGGTATATACCCAGTAATGGGATGGCTGG
4321 GTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCA
4401 ACCAACAGTGTAAAAGTGTTCCTATTTCTCCGCATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGCCATT
4481 CTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTCTTCAT
4561 GTGTTTTTTGGCTGCATAAATGTCTTCTTTTGAGAAGTGTCTGTTCATGTCCTTCGCGAAGGACAAGATACCTTAAAGAT
4641 AAGTTTTCGATAAAGAAAAGCCTTCATTTTCCTGGGGGAAATGAAGCACTTGATGCCAAGGACATTAGTAGAGGGCTAGA
4721 AAGATTGCCTGTGTGAAAGACATATGCTATATCCAAATAATAAAACAAACGAGATCCTGGGGCTCATTCATGTGACTTTC
4801 AATAAAGTATGTAGACTGTCTAATATAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' agGCGGACAGACUUGUCACu 5'
            :|| | |: |||||||| 
Target 5' gaTGCAT-TTGGAACAGTGc 3'
 1760 - 1778 153.00 -13.60
2 
miRNA  3' agGCGGACAGACUUGUCACu 5'
            :||:  | ||||:|||| 
Target 5' ttTGCTATTGTGAATAGTGc 3'
 4217 - 4236 142.00 -13.30
3 
miRNA  3' aggcggacagacUUGUCACu 5'
                      ||||||| 
Target 5' tacagtccaaccAACAGTGt 3'
 4392 - 4411 140.00 -9.20
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1328041780 3 dbSNP
rs1208869698 13 dbSNP
rs755882043 15 dbSNP
rs1224850063 18 dbSNP
rs1345555349 19 dbSNP
rs1269492262 29 dbSNP
rs750135034 37 dbSNP
rs986698480 42 dbSNP
rs1329752677 47 dbSNP
rs953964028 54 dbSNP
rs920964076 63 dbSNP
rs1257414000 64 dbSNP
rs984574861 66 dbSNP
rs752133170 67 dbSNP
rs967796449 81 dbSNP
rs1352826149 94 dbSNP
rs1020680394 109 dbSNP
rs1309137064 115 dbSNP
rs1010156022 118 dbSNP
rs764511936 126 dbSNP
rs745720524 127 dbSNP
rs1467205504 145 dbSNP
rs1035593405 174 dbSNP
rs1302215967 186 dbSNP
rs1012630969 209 dbSNP
rs1377853922 213 dbSNP
rs1379779964 224 dbSNP
rs1397631171 234 dbSNP
rs1304579478 243 dbSNP
rs776406765 244 dbSNP
rs2768572 249 dbSNP
rs892898452 250 dbSNP
rs1049114143 251 dbSNP
rs1208785275 252 dbSNP
rs776124878 260 dbSNP
rs1257135532 275 dbSNP
rs1054237760 282 dbSNP
rs770671259 285 dbSNP
rs1182782933 290 dbSNP
rs1184651263 291 dbSNP
rs994815199 302 dbSNP
rs897923983 308 dbSNP
rs1427401913 309 dbSNP
rs1432726271 337 dbSNP
rs1176845646 338 dbSNP
rs1036415199 358 dbSNP
rs939852930 359 dbSNP
rs1296311729 362 dbSNP
rs1369752125 363 dbSNP
rs1410146739 372 dbSNP
rs1289882800 382 dbSNP
rs912437010 386 dbSNP
rs542372142 391 dbSNP
rs932601156 392 dbSNP
rs1389199787 407 dbSNP
rs1313384654 418 dbSNP
rs2182721 427 dbSNP
rs979087137 443 dbSNP
rs1274500871 448 dbSNP
rs946350606 462 dbSNP
rs1474659164 463 dbSNP
rs772639812 473 dbSNP
rs150210587 491 dbSNP
rs960727092 499 dbSNP
rs1289131946 500 dbSNP
rs1191929453 520 dbSNP
rs1228315921 521 dbSNP
rs944632606 528 dbSNP
rs755390112 533 dbSNP
rs1389451048 546 dbSNP
rs5965494 557 dbSNP
rs1336497522 567 dbSNP
rs980917335 575 dbSNP
rs1363397098 582 dbSNP
rs1435328735 588 dbSNP
rs778856939 589 dbSNP
rs986097895 590 dbSNP
rs1212247154 591 dbSNP
rs780214502 596 dbSNP
rs756489913 616 dbSNP
rs768308194 623 dbSNP
rs920672140 625 dbSNP
rs1290059048 630 dbSNP
rs994848075 650 dbSNP
rs1321428119 656 dbSNP
rs147655416 657 dbSNP
rs972162377 661 dbSNP
rs1484960038 670 dbSNP
rs1015337305 683 dbSNP
rs1301864979 704 dbSNP
rs780127223 706 dbSNP
rs1187965839 719 dbSNP
rs890525984 720 dbSNP
rs1467950077 729 dbSNP
rs1449988939 730 dbSNP
rs1050910507 741 dbSNP
rs1411366847 768 dbSNP
rs932464917 771 dbSNP
rs1390185208 781 dbSNP
rs1035628971 787 dbSNP
rs899774833 796 dbSNP
rs750837461 814 dbSNP
rs982359385 826 dbSNP
rs970064235 829 dbSNP
rs1365212073 830 dbSNP
rs1437905022 833 dbSNP
rs1313504402 838 dbSNP
rs1022602203 842 dbSNP
rs1012578427 849 dbSNP
rs946630741 851 dbSNP
rs913599679 865 dbSNP
rs1208249062 869 dbSNP
rs1268866854 871 dbSNP
rs1466260018 872 dbSNP
rs1190472305 885 dbSNP
rs1235620897 893 dbSNP
rs1472372284 899 dbSNP
rs1362015617 921 dbSNP
rs1189313208 925 dbSNP
rs578034663 930 dbSNP
rs1424146810 945 dbSNP
rs1157869085 946 dbSNP
rs939138140 947 dbSNP
rs750616668 952 dbSNP
rs1388771072 987 dbSNP
rs187847735 992 dbSNP
rs892845637 994 dbSNP
rs1032743709 1005 dbSNP
rs1205452893 1009 dbSNP
rs1201997483 1010 dbSNP
rs1466472956 1012 dbSNP
rs1449297248 1014 dbSNP
rs927679217 1033 dbSNP
rs1268781534 1038 dbSNP
rs1208205289 1040 dbSNP
rs980948477 1045 dbSNP
rs767696588 1047 dbSNP
rs1349099371 1051 dbSNP
rs1286494663 1053 dbSNP
rs1289180966 1062 dbSNP
rs1027912387 1071 dbSNP
rs973690755 1078 dbSNP
rs1201834156 1095 dbSNP
rs1276467092 1104 dbSNP
rs1441769404 1110 dbSNP
rs962601416 1111 dbSNP
rs757502024 1132 dbSNP
rs1009297744 1133 dbSNP
rs1311099310 1150 dbSNP
rs757442959 1155 dbSNP
rs1473309984 1184 dbSNP
rs1170292549 1208 dbSNP
rs751592885 1214 dbSNP
rs1029007177 1216 dbSNP
rs1369132544 1223 dbSNP
rs996635856 1228 dbSNP
rs73633202 1229 dbSNP
rs1050337586 1232 dbSNP
rs930643299 1243 dbSNP
rs1274324404 1261 dbSNP
rs147048499 1265 dbSNP
rs920621416 1271 dbSNP
rs1219769824 1277 dbSNP
rs1280583965 1285 dbSNP
rs1036393114 1289 dbSNP
rs940787150 1303 dbSNP
rs1252177099 1321 dbSNP
rs1043530851 1322 dbSNP
rs1196235570 1334 dbSNP
rs1456278698 1341 dbSNP
rs1376577648 1348 dbSNP
rs763210164 1357 dbSNP
rs1478047760 1360 dbSNP
rs1174852478 1363 dbSNP
rs1382191621 1375 dbSNP
rs764250859 1376 dbSNP
rs1309019111 1378 dbSNP
rs928132421 1386 dbSNP
rs946682044 1392 dbSNP
rs982694027 1414 dbSNP
rs892359372 1416 dbSNP
rs1164906895 1428 dbSNP
rs1458400356 1440 dbSNP
rs1052124801 1446 dbSNP
rs989752964 1449 dbSNP
rs753168694 1461 dbSNP
rs957013226 1462 dbSNP
rs1248908790 1467 dbSNP
rs765521454 1473 dbSNP
rs762734919 1492 dbSNP
rs1223031881 1494 dbSNP
rs1275105364 1502 dbSNP
rs1341128727 1510 dbSNP
rs927742136 1518 dbSNP
rs1044799097 1521 dbSNP
rs969758778 1532 dbSNP
rs1451726575 1539 dbSNP
rs1200333944 1554 dbSNP
rs1445319890 1576 dbSNP
rs191367758 1583 dbSNP
rs1169723463 1584 dbSNP
rs772874986 1586 dbSNP
rs771532715 1587 dbSNP
rs973555283 1590 dbSNP
rs1391680592 1615 dbSNP
rs1407215028 1624 dbSNP
rs1318606752 1642 dbSNP
rs1364475229 1649 dbSNP
rs1018746758 1661 dbSNP
rs1356342853 1667 dbSNP
rs1242312588 1676 dbSNP
rs761354576 1680 dbSNP
rs1356607989 1684 dbSNP
rs1215089719 1687 dbSNP
rs1265715882 1699 dbSNP
rs368792799 1705 dbSNP
rs1231092344 1706 dbSNP
rs1189794956 1730 dbSNP
rs1264446498 1741 dbSNP
rs1422473751 1742 dbSNP
rs188622930 1763 dbSNP
rs142267245 1765 dbSNP
rs1433971174 1770 dbSNP
rs1157129266 1772 dbSNP
rs1324160288 1773 dbSNP
rs1388035351 1776 dbSNP
rs954840826 1797 dbSNP
rs1321196594 1799 dbSNP
rs1387008592 1811 dbSNP
rs1387214233 1812 dbSNP
rs1389945170 1828 dbSNP
rs1311732600 1829 dbSNP
rs1028946697 1830 dbSNP
rs765142322 1841 dbSNP
rs968758729 1848 dbSNP
rs1327919168 1851 dbSNP
rs1208773133 1856 dbSNP
rs749035744 1868 dbSNP
rs1482552749 1876 dbSNP
rs899144372 1891 dbSNP
rs1257305170 1908 dbSNP
rs183063739 1917 dbSNP
rs1168171861 1919 dbSNP
rs1411483588 1923 dbSNP
rs769491615 1930 dbSNP
rs1472983544 1933 dbSNP
rs1161458574 1936 dbSNP
rs746044768 1946 dbSNP
rs892396231 1947 dbSNP
rs1365523798 1958 dbSNP
rs1052747185 1962 dbSNP
rs1003212329 1973 dbSNP
rs940748964 1984 dbSNP
rs1416345024 1994 dbSNP
rs928029123 2000 dbSNP
rs1046512194 2003 dbSNP
rs1199677042 2020 dbSNP
rs1308533327 2023 dbSNP
rs553181696 2024 dbSNP
rs1233196082 2025 dbSNP
rs1257049751 2027 dbSNP
rs1044746246 2035 dbSNP
rs1486887024 2036 dbSNP
rs1203419676 2048 dbSNP
rs1251450140 2051 dbSNP
rs1483497583 2053 dbSNP
rs1451480690 2057 dbSNP
rs947814743 2059 dbSNP
rs948182987 2065 dbSNP
rs35825039 2066 dbSNP
rs759350622 2073 dbSNP
rs1395576833 2082 dbSNP
rs916778453 2089 dbSNP
rs920324439 2101 dbSNP
rs1037894136 2103 dbSNP
rs940827976 2104 dbSNP
rs1274446923 2114 dbSNP
rs1166466608 2120 dbSNP
rs1369651928 2121 dbSNP
rs1410059314 2123 dbSNP
rs908128101 2140 dbSNP
rs781601760 2149 dbSNP
rs989701160 2150 dbSNP
rs958294494 2157 dbSNP
rs954973934 2179 dbSNP
rs1385710959 2183 dbSNP
rs1337049679 2186 dbSNP
rs1276052043 2199 dbSNP
rs925569623 2200 dbSNP
rs921963603 2205 dbSNP
rs1274388432 2207 dbSNP
rs974693873 2210 dbSNP
rs147651068 2223 dbSNP
rs190843576 2228 dbSNP
rs1344760704 2244 dbSNP
rs142606476 2245 dbSNP
rs1301180036 2252 dbSNP
rs1019108310 2254 dbSNP
rs1253604747 2264 dbSNP
rs1455540825 2279 dbSNP
rs776603245 2284 dbSNP
rs1008672082 2293 dbSNP
rs758872343 2310 dbSNP
rs1347727072 2335 dbSNP
rs1021635625 2338 dbSNP
rs1293591698 2343 dbSNP
rs541254816 2346 dbSNP
rs200336978 2351 dbSNP
rs397698299 2351 dbSNP
rs1433537456 2354 dbSNP
rs1010746938 2358 dbSNP
rs956705718 2375 dbSNP
rs994692494 2383 dbSNP
rs1030832600 2391 dbSNP
rs1321332657 2412 dbSNP
rs1222505816 2424 dbSNP
rs1275128096 2432 dbSNP
rs1463568104 2434 dbSNP
rs899091843 2437 dbSNP
rs1247316629 2443 dbSNP
rs1475641351 2447 dbSNP
rs765590451 2460 dbSNP
rs906436412 2461 dbSNP
rs35386389 2466 dbSNP
rs1427541584 2467 dbSNP
rs1396076511 2469 dbSNP
rs1455145973 2473 dbSNP
rs1173184074 2493 dbSNP
rs1346278994 2497 dbSNP
rs770663724 2508 dbSNP
rs1005287620 2519 dbSNP
rs906556660 2525 dbSNP
rs1229132733 2527 dbSNP
rs1011898570 2528 dbSNP
rs1327222296 2531 dbSNP
rs1208150434 2539 dbSNP
rs750047062 2540 dbSNP
rs755330726 2540 dbSNP
rs948130750 2543 dbSNP
rs1235527541 2566 dbSNP
rs1482784942 2572 dbSNP
rs1188249982 2599 dbSNP
rs1419545637 2601 dbSNP
rs867683014 2606 dbSNP
rs898931288 2608 dbSNP
rs895291432 2610 dbSNP
rs1037823428 2618 dbSNP
rs940873567 2638 dbSNP
rs886638201 2648 dbSNP
rs1251465658 2670 dbSNP
rs1402954752 2678 dbSNP
rs1332722878 2687 dbSNP
rs1202884798 2693 dbSNP
rs1051924156 2702 dbSNP
rs1315056247 2713 dbSNP
rs933596337 2723 dbSNP
rs1280225912 2728 dbSNP
rs1352846416 2729 dbSNP
rs186501137 2730 dbSNP
rs974727969 2737 dbSNP
rs924180689 2740 dbSNP
rs1211299425 2755 dbSNP
rs1259268144 2757 dbSNP
rs1481874491 2762 dbSNP
rs947355707 2771 dbSNP
rs761303743 2780 dbSNP
rs1232981221 2782 dbSNP
rs773921009 2789 dbSNP
rs763519589 2792 dbSNP
rs989339248 2802 dbSNP
rs956141491 2806 dbSNP
rs1435802027 2810 dbSNP
rs1351036219 2817 dbSNP
rs1031282732 2823 dbSNP
rs911591229 2833 dbSNP
rs746681314 2834 dbSNP
rs970651223 2837 dbSNP
rs1337636755 2845 dbSNP
rs2254886 2849 dbSNP
rs555804328 2850 dbSNP
rs1028747030 2851 dbSNP
rs1347060191 2855 dbSNP
rs1011929772 2872 dbSNP
rs973220554 2876 dbSNP
rs963218536 2879 dbSNP
rs1414178568 2881 dbSNP
rs1339754763 2887 dbSNP
rs1204028087 2895 dbSNP
rs180730944 2902 dbSNP
rs769597342 2904 dbSNP
rs190961209 2916 dbSNP
rs1196128007 2924 dbSNP
rs1246696041 2928 dbSNP
rs1403998195 2939 dbSNP
rs1004829928 2942 dbSNP
rs1161470389 2952 dbSNP
rs1195977129 2966 dbSNP
rs1473173440 2973 dbSNP
rs1168765295 2976 dbSNP
rs1429460977 2976 dbSNP
rs1398872394 2981 dbSNP
rs771613804 2983 dbSNP
rs1403745607 2990 dbSNP
rs1015921043 2992 dbSNP
rs1175811635 3012 dbSNP
rs1473963569 3015 dbSNP
rs1005066960 3039 dbSNP
rs776975269 3051 dbSNP
rs1226377982 3052 dbSNP
rs1460646483 3063 dbSNP
rs895238642 3067 dbSNP
rs1207640868 3071 dbSNP
rs1260629365 3072 dbSNP
rs771346310 3076 dbSNP
rs1329719966 3083 dbSNP
rs1246707268 3100 dbSNP
rs780590661 3103 dbSNP
rs933461611 3112 dbSNP
rs1375061325 3113 dbSNP
rs1471933754 3117 dbSNP
rs1381055081 3120 dbSNP
rs1395336297 3121 dbSNP
rs1463056036 3133 dbSNP
rs900770680 3143 dbSNP
rs1327888501 3177 dbSNP
rs1284636071 3185 dbSNP
rs1381496444 3185 dbSNP
rs936820749 3193 dbSNP
rs1327911501 3195 dbSNP
rs747237632 3198 dbSNP
rs1380875205 3203 dbSNP
rs1292241597 3224 dbSNP
rs1334975011 3236 dbSNP
rs1234562929 3240 dbSNP
rs1322586744 3242 dbSNP
rs777851156 3250 dbSNP
rs1266856527 3258 dbSNP
rs1043020337 3271 dbSNP
rs1039221488 3287 dbSNP
rs944316934 3294 dbSNP
rs1264332257 3297 dbSNP
rs145572392 3299 dbSNP
rs1187163964 3307 dbSNP
rs1418806205 3316 dbSNP
rs1476265749 3318 dbSNP
rs1157524378 3319 dbSNP
rs1407626920 3323 dbSNP
rs1414968380 3327 dbSNP
rs1411256986 3338 dbSNP
rs914591672 3358 dbSNP
rs1181641809 3362 dbSNP
rs748650293 3367 dbSNP
rs779330126 3373 dbSNP
rs1386898536 3389 dbSNP
rs1394046912 3402 dbSNP
rs1311937850 3410 dbSNP
rs1355695053 3411 dbSNP
rs934764753 3416 dbSNP
rs928713235 3417 dbSNP
rs1416156650 3420 dbSNP
rs186058079 3422 dbSNP
rs970517074 3428 dbSNP
rs987102349 3434 dbSNP
rs1262991218 3440 dbSNP
rs1343357252 3458 dbSNP
rs149681468 3470 dbSNP
rs866634201 3473 dbSNP
rs781559899 3474 dbSNP
rs1486784249 3476 dbSNP
rs1180202812 3480 dbSNP
rs931700853 3493 dbSNP
rs963276006 3494 dbSNP
rs1016365120 3506 dbSNP
rs1004526200 3513 dbSNP
rs767157077 3514 dbSNP
rs1365437370 3546 dbSNP
rs1464417356 3558 dbSNP
rs1323438450 3564 dbSNP
rs1290257235 3567 dbSNP
rs973148745 3567 dbSNP
rs1305740360 3573 dbSNP
rs1372038404 3577 dbSNP
rs963529586 3581 dbSNP
rs1309866778 3584 dbSNP
rs1329841635 3609 dbSNP
rs1245006186 3616 dbSNP
rs757416217 3623 dbSNP
rs1030047261 3624 dbSNP
rs1014771253 3627 dbSNP
rs1481024926 3632 dbSNP
rs1357506283 3636 dbSNP
rs779427323 3636 dbSNP
rs181365545 3663 dbSNP
rs900718052 3664 dbSNP
rs1436159663 3669 dbSNP
rs751188274 3677 dbSNP
rs1025362486 3687 dbSNP
rs1395479480 3692 dbSNP
rs1436327402 3721 dbSNP
rs1012245359 3724 dbSNP
rs1439139008 3725 dbSNP
rs1462100747 3750 dbSNP
rs1350986949 3754 dbSNP
rs1163282530 3760 dbSNP
rs1387866615 3761 dbSNP
rs1440862581 3765 dbSNP
rs1304746180 3767 dbSNP
rs1423162365 3769 dbSNP
rs1226610677 3770 dbSNP
rs1039169230 3773 dbSNP
rs1170071679 3779 dbSNP
rs1308289324 3780 dbSNP
rs1032410103 3793 dbSNP
rs1011812667 3806 dbSNP
rs1263767906 3814 dbSNP
rs1468061893 3825 dbSNP
rs1213038394 3831 dbSNP
rs893371633 3839 dbSNP
rs1455471440 3842 dbSNP
rs1184544283 3852 dbSNP
rs1418455621 3859 dbSNP
rs189768461 3860 dbSNP
rs1230365087 3874 dbSNP
rs751788918 3879 dbSNP
rs762408286 3896 dbSNP
rs1460446441 3900 dbSNP
rs1260353492 3914 dbSNP
rs1327213330 3915 dbSNP
rs1184272933 3925 dbSNP
rs1433425881 3940 dbSNP
rs1288673409 3941 dbSNP
rs1489396407 3944 dbSNP
rs1216583599 3949 dbSNP
rs1310815051 3950 dbSNP
rs775472360 3960 dbSNP
rs1334307552 3973 dbSNP
rs1233970886 3982 dbSNP
rs1273795270 3984 dbSNP
rs934651559 3985 dbSNP
rs1221715101 3986 dbSNP
rs1008857978 4014 dbSNP
rs765142185 4026 dbSNP
rs1045809302 4028 dbSNP
rs1229399686 4036 dbSNP
rs1307136653 4047 dbSNP
rs1474633984 4048 dbSNP
rs948781962 4053 dbSNP
rs758495573 4057 dbSNP
rs1419320114 4059 dbSNP
rs1399474399 4073 dbSNP
rs916444946 4084 dbSNP
rs1346187459 4085 dbSNP
rs759397004 4091 dbSNP
rs990632815 4092 dbSNP
rs1368866637 4093 dbSNP
rs1303042116 4103 dbSNP
rs931628823 4117 dbSNP
rs963641161 4126 dbSNP
rs1415562344 4136 dbSNP
rs909100295 4164 dbSNP
rs1327113739 4165 dbSNP
rs1222028747 4172 dbSNP
rs1283446697 4184 dbSNP
rs983530040 4185 dbSNP
rs1217674700 4198 dbSNP
rs907660257 4201 dbSNP
rs983312435 4208 dbSNP
rs752765531 4230 dbSNP
rs1309023961 4231 dbSNP
rs765187842 4237 dbSNP
rs1409344261 4238 dbSNP
rs971002258 4248 dbSNP
rs1172176644 4265 dbSNP
rs139516028 4282 dbSNP
rs759573113 4285 dbSNP
rs1029949360 4306 dbSNP
rs1434369662 4310 dbSNP
rs1334100449 4345 dbSNP
rs997253453 4348 dbSNP
rs1429442787 4350 dbSNP
rs1064038 4369 dbSNP
rs1278945457 4400 dbSNP
rs917838393 4420 dbSNP
rs492933 4422 dbSNP
rs747178137 4433 dbSNP
rs1011676814 4438 dbSNP
rs1346815730 4452 dbSNP
rs773339348 4456 dbSNP
rs1281979111 4467 dbSNP
rs1435634163 4475 dbSNP
rs1180464657 4484 dbSNP
rs1205622913 4489 dbSNP
rs1053342270 4495 dbSNP
rs999266828 4499 dbSNP
rs1480400865 4503 dbSNP
rs1471451030 4505 dbSNP
rs1192253161 4506 dbSNP
rs1394889295 4507 dbSNP
rs185127671 4517 dbSNP
rs181567086 4526 dbSNP
rs1394587881 4544 dbSNP
rs1409524145 4550 dbSNP
rs1000929333 4551 dbSNP
rs966823458 4557 dbSNP
rs948804776 4561 dbSNP
rs915972752 4564 dbSNP
rs1370026318 4570 dbSNP
rs1054976259 4571 dbSNP
rs941837521 4576 dbSNP
rs189222273 4586 dbSNP
rs184764527 4587 dbSNP
rs1352879223 4595 dbSNP
rs1273128399 4596 dbSNP
rs1439004499 4600 dbSNP
rs1212412165 4606 dbSNP
rs983427043 4611 dbSNP
rs772992924 4628 dbSNP
rs922967982 4642 dbSNP
rs1475215204 4653 dbSNP
rs1296067437 4664 dbSNP
rs192641110 4670 dbSNP
rs1459909444 4672 dbSNP
rs1008390671 4681 dbSNP
rs1393640569 4686 dbSNP
rs1441469113 4693 dbSNP
rs975703472 4694 dbSNP
rs964450558 4700 dbSNP
rs1324422681 4702 dbSNP
rs1226281251 4714 dbSNP
rs1270382259 4729 dbSNP
rs1479384330 4731 dbSNP
rs1319447337 4737 dbSNP
rs1414126207 4739 dbSNP
rs1230909657 4742 dbSNP
rs1182212974 4745 dbSNP
rs1429875846 4749 dbSNP
rs1017280605 4754 dbSNP
rs1469307741 4769 dbSNP
rs1212091445 4773 dbSNP
rs3747347 4787 dbSNP
rs1248211068 4788 dbSNP
rs552043892 4794 dbSNP
rs1194213437 4795 dbSNP
rs957524638 4804 dbSNP
rs891309000 4806 dbSNP
rs1183803800 4810 dbSNP
rs1164314005 4816 dbSNP
rs1418596653 4819 dbSNP
rs1461943788 4823 dbSNP
rs1032257395 4826 dbSNP
rs1262524740 4835 dbSNP
rs999152998 4840 dbSNP
rs907437638 4845 dbSNP
rs1201875120 4846 dbSNP
rs751190078 4848 dbSNP
rs777336357 4869 dbSNP
rs56015206 4878 dbSNP
rs1318630052 4891 dbSNP
rs1341985701 4894 dbSNP
rs1049952073 4895 dbSNP
rs1292148156 4905 dbSNP
rs1334865189 4917 dbSNP
rs1334333714 4919 dbSNP
rs1247662162 4935 dbSNP
rs894569976 4972 dbSNP
rs7888212 4973 dbSNP
rs764844667 4974 dbSNP
rs1383092455 4983 dbSNP
rs367741846 4987 dbSNP
rs1258359837 5005 dbSNP
rs1476211493 5027 dbSNP
rs377589909 5029 dbSNP
rs941439498 5032 dbSNP
rs1189600046 5033 dbSNP
rs1361983392 5033 dbSNP
rs759487289 5033 dbSNP
rs1362156762 5034 dbSNP
rs753847301 5034 dbSNP
rs1425354422 5037 dbSNP
rs184510922 5037 dbSNP
rs1048007570 5038 dbSNP
rs1397242738 5039 dbSNP
rs1305561594 5040 dbSNP
rs1335695323 5041 dbSNP
rs1240321631 5044 dbSNP
rs1288635249 5044 dbSNP
rs760589218 5044 dbSNP
rs7883184 5044 dbSNP
rs58090278 5045 dbSNP
rs771097777 5045 dbSNP
rs1491008813 5046 dbSNP
rs1453042945 5047 dbSNP
rs1361845606 5048 dbSNP
rs1189379140 5049 dbSNP
rs1445412324 5052 dbSNP
rs1484311296 5052 dbSNP
rs1179122402 5053 dbSNP
rs1381971817 5053 dbSNP
rs1418445695 5053 dbSNP
rs764161940 5053 dbSNP
rs1242795767 5054 dbSNP
rs1172677332 5056 dbSNP
rs1467191341 5058 dbSNP
rs1295961949 5061 dbSNP
rs761948207 5076 dbSNP
rs1395087547 5077 dbSNP
rs1182019020 5083 dbSNP
rs1392514773 5084 dbSNP
rs1466289878 5106 dbSNP
rs1312061710 5111 dbSNP
rs1262584737 5112 dbSNP
rs1205051309 5123 dbSNP
rs1369306963 5126 dbSNP
rs1349172673 5129 dbSNP
rs1304530270 5130 dbSNP
rs1314169376 5133 dbSNP
rs112761985 5143 dbSNP
rs1250852173 5144 dbSNP
rs1480976634 5146 dbSNP
rs1199235755 5148 dbSNP
rs1239908624 5160 dbSNP
rs1467012023 5162 dbSNP
rs1192765780 5185 dbSNP
rs1425541519 5187 dbSNP
rs1267548739 5189 dbSNP
rs1247204124 5191 dbSNP
rs1359661939 5197 dbSNP
rs1465671495 5218 dbSNP
rs1313888165 5231 dbSNP
rs1392914056 5237 dbSNP
rs1440729352 5244 dbSNP
rs1327010269 5248 dbSNP
rs1370119704 5261 dbSNP
rs1380773642 5275 dbSNP
rs1450075444 5286 dbSNP
rs1366726953 5287 dbSNP
rs1267420702 5299 dbSNP
rs1308202048 5302 dbSNP
rs1318485348 5309 dbSNP
rs1259986606 5311 dbSNP
rs1332588061 5320 dbSNP
rs1212942202 5323 dbSNP
rs1247103772 5328 dbSNP
rs1381520252 5331 dbSNP
rs1184461585 5366 dbSNP
rs1260596403 5374 dbSNP
rs1477901825 5383 dbSNP
rs1172197667 5390 dbSNP
rs1414947570 5418 dbSNP
rs1461397938 5438 dbSNP
rs1382724611 5443 dbSNP
rs1166055615 5448 dbSNP
rs1352022165 5463 dbSNP
rs1429032052 5475 dbSNP
rs1288568563 5483 dbSNP
rs1362911425 5485 dbSNP
rs1164737617 5489 dbSNP
rs1425025186 5490 dbSNP
rs1384430669 5523 dbSNP
rs1161885239 5524 dbSNP
rs1451632571 5537 dbSNP
rs1373646827 5540 dbSNP
rs1192584736 5545 dbSNP
rs1290482850 5568 dbSNP
rs1323345871 5570 dbSNP
rs1213382114 5583 dbSNP
rs1445731437 5588 dbSNP
rs1488421347 5593 dbSNP
rs774232652 5610 dbSNP
rs1223941666 5611 dbSNP
rs1183000781 5614 dbSNP
rs1416570878 5624 dbSNP
rs768740322 5627 dbSNP
rs1158835177 5630 dbSNP
rs1361503173 5635 dbSNP
rs1421790185 5643 dbSNP
rs1490282904 5645 dbSNP
rs749749177 5648 dbSNP
rs780572923 5652 dbSNP
rs1284779452 5653 dbSNP
rs1381260350 5656 dbSNP
rs1221945646 5663 dbSNP
rs1341045258 5664 dbSNP
rs1306052010 5666 dbSNP
rs1354098806 5668 dbSNP
rs1270221160 5669 dbSNP
rs770120289 5683 dbSNP
rs975734641 5684 dbSNP
rs1325416711 5686 dbSNP
rs1210198195 5695 dbSNP
rs1405542523 5696 dbSNP
rs1469061734 5720 dbSNP
rs1177098945 5735 dbSNP
rs1381365964 5736 dbSNP
rs943005853 5750 dbSNP
rs1172073420 5757 dbSNP
rs746273966 5758 dbSNP
rs373315731 5759 dbSNP
rs1397513696 5760 dbSNP
rs1352789267 5763 dbSNP
rs778517131 5779 dbSNP
rs1031869527 5783 dbSNP
rs1242032845 5788 dbSNP
rs1300883235 5789 dbSNP
rs1474451248 5795 dbSNP
rs977967610 5796 dbSNP
rs1435539518 5801 dbSNP
rs1204500458 5802 dbSNP
rs971650034 5807 dbSNP
rs1459426402 5815 dbSNP
rs1024526730 5816 dbSNP
rs187987389 5824 dbSNP
rs1394797669 5828 dbSNP
rs1478493378 5832 dbSNP
rs1480435642 5845 dbSNP
rs894517977 5847 dbSNP
rs1267130948 5848 dbSNP
rs375382481 5867 dbSNP
rs369728397 5868 dbSNP
rs1005663649 5869 dbSNP
rs900152266 5870 dbSNP
rs1448811166 5874 dbSNP
rs1323657318 5875 dbSNP
rs1330245473 5879 dbSNP
rs182927447 5881 dbSNP
rs887171915 5884 dbSNP
rs1336953906 5893 dbSNP
rs1047575870 5900 dbSNP
rs1194920405 5901 dbSNP
rs1320644804 5909 dbSNP
rs1252798931 5913 dbSNP
rs190691638 5915 dbSNP
rs1201338765 5918 dbSNP
rs1240561575 5925 dbSNP
rs1047975312 5926 dbSNP
rs1171477831 5929 dbSNP
rs949229009 5938 dbSNP
rs929103164 5950 dbSNP
rs1223968519 5952 dbSNP
rs767352633 5962 dbSNP
rs1281090241 5974 dbSNP
rs917786048 5978 dbSNP
rs990707874 5980 dbSNP
rs1354939527 5992 dbSNP
rs1324330870 6005 dbSNP
rs1398944554 6009 dbSNP
rs1278302921 6011 dbSNP
rs937931033 6012 dbSNP
rs763198489 6022 dbSNP
rs1408491308 6023 dbSNP
rs943289005 6032 dbSNP
rs925235927 6037 dbSNP
rs761887178 6042 dbSNP
rs1488091881 6048 dbSNP
rs774581870 6054 dbSNP
rs1177254385 6057 dbSNP
rs910253299 6077 dbSNP
rs1469687588 6079 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545213. RNA binding protein: AGO2. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM4903829
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_a
Location of target site NM_002547 | 3UTR | CAACAGUGUAAAAGUGUUCCUAUUUCUCCGCAUCCUCUCCAGCACCUGUUGUUUCCUGACUUUUUAAUGAUUGCCAUUCUAACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903830
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_b
Location of target site NM_002547 | 3UTR | ACCAACAGUGUAAAAGUGUUCCUAUUUCUCCGCAUCCUCUCCAGCACCUGUUGUUUCCUGACUUUUUAAUGAUUGCCAUUCUAACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903831
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / 124TD_shELAVL3_a
Location of target site NM_002547 | 3UTR | ACCAACAGUGUAAAAGUGUUCCUAUUUCUCCGCAUCCUCUCCAGCACCUGUUGUUUCCUGACUUUUUAAUGAUUGCCAUUCUAACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903832
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / 124TD_shELAVL3_b
Location of target site NM_002547 | 3UTR | CAACAGUGUAAAAGUGUUCCUAUUUCUCCGCAUCCUCUCCAGCACCUGUUGUUUCCUGACUUUUUAAUGAUUGCCAUUCUAACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_002547 | 3UTR | CAAAUGGUAUUUCUAGUUCUAGAUCCCUGAGGAAUCGCCACACUGACUUCCACAAUGGUUGAACUAGUUUACAGUCCAACCAACAGUGUAAAAGUGUUCCUAUUUCUCCGCAUCCUCUCCAGCACCUGUUGUUUCCUGACUUUUUAAUGAUUGCCAUUCUAACUGGUGUGAGAUGAUAUCUCAUAGUGGUUUUGAUUUGCAUUUCUCUGAUGGCCAGUGAUGAUGAGCAUUUCUUCAUGUGUUUUUUGGCUGCAUAAAUGUCUUCUUUUGAGAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_002547 | 3UTR | CUUCCACAAUGGUUGAACUAGUUUACAGUCCAACCAACAGUGUAAAAGUGUUCCUAUUUCUCCGCAUCCUCUCCAGCACCUGUUGUUUCCUGACUUUUUAAUGAUUGCCAUUCUAACUGGUGUGAGAUGAUAUCUCAUAGUGGUUUUGAUUUGCAUUUCUCUGAUGGCCAGUGAUGAUGAGCAUUUCUUCAUGUGUUUUUUGGCUGCAUAAAUGUCUUCUUUUGAGAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_002547 | 3UTR | UGACUUCCACAAUGGUUGAACUAGUUUACAGUCCAACCAACAGUGUAAAAGUGUUCCUAUUUCUCCGCAUCCUCUCCAGCACCUGUUGUUUCCUGACUUUUUAAUGAUUGCCAUUCUAACUGGUGUGAGAUGAUAUCUCAUAGUGGUUUUGAUUUGCAUUUCUCUGAUGGCCAGUGAUGAUGAGCAUUUCUUCAUGUGUUUUUUGGCUGCAUAAAUGUCUUCUUUUGAGAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_002547 | 3UTR | CUUCCACAAUGGUUGAACUAGUUUACAGUCCAACCAACAGUGUAAAAGUGUUCCUAUUUCUCCGCAUCCUCUCCAGCACCUGUUGUUUCCUGACUUUUUAAUGAUUGCCAUUCUAACUGGUGUGAGAUGAUAUCUCAUAGUGGUUUUGAUUUGCAUUUCUCUGAUGGCCAGUGAUGAUGAGCAUUUCUUCAUGUGUUUUUUGGCUGCAUAAAUGUCUUCUUUUGAGAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_002547 | 3UTR | CUGACUUCCACAAUGGUUGAACUAGUUUACAGUCCAACCAACAGUGUAAAAGUGUUCCUAUUUCUCCGCAUCCUCUCCAGCACCUGUUGUUUCCUGACUUUUUAAUGAUUGCCAUUCUAACUGGUGUGAGAUGAUAUCUCAUAGUGGUUUUGAUUUGCAUUUCUCUGAUGGCCAGUGAUGAUGAGCAUUUCUUCAUGUGUUUUUUGGCUGCAUAAAUGUCUUCUUUUGAGAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_002547 | 3UTR | CUCAUUUGGGUAUAUACCCAGUAAUGGGAUGGCUGGGUCAAAUGGUAUUUCUAGUUCUAGAUCCCUGAGGAAUCGCCACACUGACUUCCACAAUGGUUGAACUAGUUUACAGUCCAACCAACAGUGUAAAAGUGUUCCUAUUUCUCCGCAUCCUCUCCAGCACCUGUUGUUUCCUGACUUUUUAAUGAUUGCCAUUCUAACUGGUGUGAGAUGAUAUCUCAUAGUGGUUUUGAUUUGCAUUUCUCUGAUGGCCAGUGAUGAUGAGCAUUUCUUCAUGUGUUUUUUGGCUGCAUAAAUGUCUUCUUUUGAGAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 11 for dataset GSM545213
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / Control
Location of target site ENST00000355520.5 | 3UTR | UUUACAGUCCAACCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28260 Renal cortex and medulla 0.793 6.1e-4 0.830 2.2e-4 13 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.561 1.8e-3 -0.426 1.7e-2 25 Click to see details
GSE26953 Aortic valvular endothelial cells 0.375 3.5e-2 0.540 3.2e-3 24 Click to see details
GSE28544 Breast cancer -0.295 8.1e-2 -0.008 4.9e-1 24 Click to see details
GSE42095 Differentiated embryonic stem cells -0.223 1.5e-1 -0.183 2.0e-1 23 Click to see details
GSE32688 Pancreatic cancer 0.05 3.9e-1 0.181 1.6e-1 32 Click to see details
GSE38226 Liver fibrosis -0.018 4.7e-1 0.066 3.9e-1 21 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
55 hsa-miR-1208 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT076103 ADORA2B adenosine A2b receptor 2 2
MIRT447464 OSMR oncostatin M receptor 2 2
MIRT448145 ESF1 ESF1 nucleolar pre-rRNA processing protein homolog 2 2
MIRT463639 YY1 YY1 transcription factor 2 4
MIRT465065 TSR1 TSR1, ribosome maturation factor 2 2
MIRT468464 SET SET nuclear proto-oncogene 2 4
MIRT480171 CALM3 calmodulin 3 2 2
MIRT481495 ARL6IP1 ADP ribosylation factor like GTPase 6 interacting protein 1 2 8
MIRT484111 ABCD2 ATP binding cassette subfamily D member 2 2 4
MIRT499834 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT500261 ZNF788 zinc finger family member 788 2 6
MIRT500551 XBP1P1 X-box binding protein 1 pseudogene 1 2 8
MIRT502697 CSNK1G1 casein kinase 1 gamma 1 2 4
MIRT517786 EFCAB11 EF-hand calcium binding domain 11 2 2
MIRT519191 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT523114 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT527425 NRL neural retina leucine zipper 2 2
MIRT529509 IYD iodotyrosine deiodinase 2 2
MIRT533705 TMEM67 transmembrane protein 67 2 2
MIRT535694 NEURL1B neuralized E3 ubiquitin protein ligase 1B 2 2
MIRT536141 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT544878 ZNF543 zinc finger protein 543 2 4
MIRT551362 EPM2AIP1 EPM2A interacting protein 1 2 2
MIRT555949 NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 2 2
MIRT561498 SRSF2 serine and arginine rich splicing factor 2 2 2
MIRT569681 AMACR alpha-methylacyl-CoA racemase 2 2
MIRT572518 KIAA0232 KIAA0232 2 2
MIRT572877 OPHN1 oligophrenin 1 2 2
MIRT572924 PRAMEF1 PRAME family member 1 2 2
MIRT607528 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT611076 ZNF621 zinc finger protein 621 2 2
MIRT613236 CCDC39 coiled-coil domain containing 39 2 2
MIRT616542 NFATC2 nuclear factor of activated T-cells 2 2 2
MIRT620010 CCDC137 coiled-coil domain containing 137 2 2
MIRT621491 STYK1 serine/threonine/tyrosine kinase 1 2 2
MIRT622379 SALL1 spalt like transcription factor 1 2 2
MIRT628226 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT636458 LRCH3 leucine rich repeats and calponin homology domain containing 3 2 2
MIRT636546 FAM126B family with sequence similarity 126 member B 2 2
MIRT637350 PIGP phosphatidylinositol glycan anchor biosynthesis class P 2 2
MIRT637604 ZNF554 zinc finger protein 554 2 2
MIRT637732 EXO5 exonuclease 5 2 2
MIRT638697 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT640634 ZIC4 Zic family member 4 2 2
MIRT641535 SNW1 SNW domain containing 1 2 2
MIRT648796 VPS8 VPS8, CORVET complex subunit 2 2
MIRT663060 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT666581 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT699206 FYN FYN proto-oncogene, Src family tyrosine kinase 2 2
MIRT704875 CD164 CD164 molecule 2 2
MIRT706850 DNAJB13 DnaJ heat shock protein family (Hsp40) member B13 2 2
MIRT712941 CCBE1 collagen and calcium binding EGF domains 1 2 3
MIRT714653 FSTL1 follistatin like 1 2 2
MIRT722320 SH2D1A SH2 domain containing 1A 2 2
MIRT722535 EPRS glutamyl-prolyl-tRNA synthetase 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1208 Fulvestrant 17756771 NSC719276 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-1208 Sunitinib 5329102 NSC750690 approved sensitive High Renal Cell Cancer tissue
hsa-miR-1208 Cisplatin 5460033 NSC119875 approved sensitive Low Renal Cell Cancer cell line (Caki-1)
hsa-mir-1208 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-1208 Paclitaxel 36314 NSC125973 approved resistant cell line (W1)
hsa-mir-1208 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-miR-1208 Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM17)
hsa-miR-1208 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-1208 Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-1208 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-1208 Cisplatin 5460033 NSC119875 approved sensitive cell line (RPMI2650)
hsa-miR-1208 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-1208 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-1208 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-1208 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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