miRTarBase - #MIRT572913


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pre-miRNA Information
pre-miRNA hsa-mir-3128   
Genomic Coordinates chr2: 177255945 - 177256010
Description Homo sapiens miR-3128 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3128
Sequence 5| UCUGGCAAGUAAAAAACUCUCAU |27
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN31530001 21 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1235581387 2 dbSNP
rs1336086844 4 dbSNP
rs1049299498 14 dbSNP
rs1442692120 17 dbSNP
rs574224659 17 dbSNP
rs911997793 17 dbSNP
rs1235274433 19 dbSNP
rs868602383 21 dbSNP
Putative Targets

Gene Information
Gene Symbol MTMR3   
Synonyms FYVE-DSP1, ZFYVE10
Description myotubularin related protein 3
Transcript NM_021090   
Other Transcripts NM_153050 , NM_153051   
Expression
Putative miRNA Targets on MTMR3
3'UTR of MTMR3
(miRNA target sites are highlighted)		 
>MTMR3|NM_021090|3'UTR
   1 AGCTCAGTGACCTGGGTGGGCAGTGGCCAAGCTGCTGTTCCTATGACAGGCCCACTCAACCTGGGCAGACCGAGAGGCCC
  81 GTGCACTTTGGAATGGGAGCGTGGAACCACCTGTACAGAGTGACAGATTTGGGATGCACCACTGGATTGTAGATTGATTT
 161 TTCTTTCCTGTCCCCCTACTCCCTCCCTACCTTTTCCATCCTCCTCCTCTGCCTTCAAAAAAGGAAACTTTCCCTTGGTT
 241 GTCTTAATTTTTTTTTTTTTTGATGGAAGACCAAGGGTTGCCAGGCCCACTGTAACTGCCGAGCTGCCTGCTGTCACGTG
 321 ACACTGAGGGATGGCTTGTTTCTTCCGGGTGGGAGGATGGTGGTCAGAGCCAGGAGTATGGAGATCTGAGACCGTGAGCA
 401 GGGAAGAAAGCCAGTGCTAACATGCAACCATTCCTCACGCCACCGCCACATCAGAGCTGGTTGGGAACCCTTTGCTGCTG
 481 GGGAGGCTGGAAGCATATTCCCCAAGAGCACTGCCCTGGGCATCATCTCCCTCCTGCGAGGAGCTGAGCCAGTCCCCTCA
 561 CAGATGGATAAATGAGGCTGATGTTTGGAGGGAGAGGCACACGGTAAATGGCATCCCCTTAGGCGCCTCTTTGGGAAAGG
 641 AAAGTGGATGCTCCTTTGAGGCAGGCGAGGGGCTGGGAGTGGGTAGCCGTCATGTTGTCCCCCGTGGGATCCCATTTTTA
 721 ACTTGACCCAGATTGTCTTGGGCTCCTTTTACTTTCAGGGGGCTGCTTTCCTGGGCCAGGCTGTGTAGCACTTCCCACCC
 801 TCAGGCATGAGTACAGACTGGTCAAAATGTTTATGCAGTCAAGGCCAAAGCCTGCCCTGAGCCCAGACACACCTGGGTCC
 881 CCATTCTGGGGCCTGGTCCCCTAAACAATCTCTTCCTCAGCCAGCACAGGGAAATCCAGACTCAGGGTTCCAGAAATCCC
 961 CCGTTCCCAAACCAAACCAATCATGGATCTTCCCTTTAAGGGGTAGAATCAGCCTTTAGAGTTACAAGCCCCTGGAAAAG
1041 GGAGCAGGTCCCATACAATCAGCCTTTCTCCTCTTCTCTTCTTGGGACAGGAATAACTGCTGAGCAGTCCCCCTTTGCCA
1121 CTCCTGGCTGTCTGAGTGGGCACTTGTCTGGCTGCTGGCCAGCAGTGAAGGGCCACTTGGTGACTTCGTAGGGTTCCTTA
1201 GAGAAGTGACATGGCCTTGAGGAGATTCAGGGCACCTTTCCTCAGTGAGCTTTGATATGGTCCAAAAACAGCCTTAAATC
1281 AAGAATATTTGTGGAGGTAGGTGTGGGGAAGGTTGGAGAAGAGTTAGGTTTGTGCTTTGTAATCTTGGCATCCATGTTTT
1361 GTGCCTGCCCTCCCTCTTGGGGAGGCCATGCTTGACTCTGCTGAAAGCTGCTAACTGGTGACAGGGTGGATCATGGTGAG
1441 GACTAGGGGTAAGGTCAGGGAATGCTTAAGCTCTGGCCCTGCCCTGTATTCCTCTTCCCCTTGGTAGCAGTTCCCTGACC
1521 AAGGGCAAGGTGTGTCTCAGGAAGGTGGTTCTGTGCATGCCTGGGTGTGGTTAAGGCGTGGCCCAGAAGGCTTCCCTGGT
1601 GCTCTCAGTCCAGGCAAAGCCCAGAGCATCTGAGCACGTCTCTGACTTCCAGTGGCAACACAGTTTGAACGTGGTGAAAC
1681 AGGGTGTAGTTCTTTTCCACATTCTGTGTCATCTAGTCGTGCAGGTAGGGAAAAAGTTGGTCTAATTGAAGATTGTGCAT
1761 TTCCTAGTGACAGGTGCCAAGAGGTTATGATACGGGTTTCTTGGGTCTGATGTACAGTGTGAATAAATGCTTGCAGCTCT
1841 TAGCTCTTTTTTGATCGATGAAGCACTTTTTTATTAATATTTTCCTTTGTTAAAGGAGGAACCGTAACTCTCCATAGCTG
1921 TACATATAACCCTTTTCTCCTAAAGAGGAGTCAGTCAGTGCTCCTATATTTTTCATTTTTTGTCAAAGCAAGAAGTAAAT
2001 ACTTTAGAATTGTTAAATATATAAATAAAGCAAATAAAGTTGAGTGTTCCACATGGTAGCATTTGCTAACACTTCCTAAT
2081 TCTTTGCCCTGTGGTTTATCCCCTCTTCGTCCCTTTTCCCTCTCACACAGAAGTGTTTGAGGGCCTGCTGGGAAACTGAC
2161 CTTTGGCAAAGGAAAGCTACAGATAGCCTTCCGACTCTAGACCTTGGCAAGGAGCCTCACCATGATGTTCAAGCACTGAA
2241 CGCATTTCCTCAGTGATTTTGCTCCTAAAATCTCCCAGGCTAAAAGAGGGCAAAGCAGTCAGGGATCTGACCTGGCAGCT
2321 ATTCCTCCTTCTCTGAAGAGTTCCCATCAGTAGTCATTACAACTACCTCTCGCCTCAAGGCTCCATTTTTAGCTGCTGCT
2401 CTGATTTCAGGGCAGCCAGTACTCTGGCCCCTTCAGTCGGGGAGTGGAAGGAGATGTGGGGTGGGGGTGAGAAAATGCTT
2481 CTGCCTGTTGTTCTTGAAGGATAGACTATGGGTGGGCAGAGAGAACTGGGGGCAGAAATGGAATTAGATGTGATTGGGTT
2561 ATGCAGTCAACTAGAGGTCTCCTTCCCGCCCTCTCTCCACACAGAGAGGAACCTCTGCTCCTTAGCTCTTACAGCAGGAC
2641 TGTGGCATCTAGTCACTTCAATACTAGTTCTTGCTCTTCACAGAGGTAGATTTTTCTTTACCCTACAGCACTGTTGGGCA
2721 TCCCTCCCATCACATGGGTCTGTGGGTGAGATATGTTATGCTGTTCCTCCCTCGGGAAGGTTGGTATTGAGGGGTGCCTT
2801 GCTCCAGAGGCGCCAGCCCAGCATCTGTGGTGAGTTGGCTAAGATCCAGAGTGACCTGCTCAGAGCTCCCCAGAGGCCTT
2881 CACTCTTTGGGGCAGTCTCTCTAGGGTCACTTTCTGAATGTACCTTCTACCTAAAGTATACAAACACAAAGAGCCAGCTG
2961 AGCTGGTTCTAGTGTGAAAGCCGTAAGTGCCACCCAGCAGGCGTTTGAAAACAAGAAATCATTCTTCTGTGGAAGGAGAA
3041 TGTGCCATCTCAGCTACCCTCAGTCCGCCAGGCAGCCCAGTCTGTGTATTCATATGAAGTTGTGAAAACCATGAGTGTGT
3121 GCCATGGCCATCGTGTCTACACACAGCCACTATTGTTCCTGTGGGCTAGTCTCCAGCAAATTAAAACACTGGCATGGCCT
3201 AGGAAGGGCGTTGCGAGCTCCTAAATGGAAAGCTTCTCTGGGGGTAGGGAGATGAAGAGCCAAGATGCTGGTGAAGCAGG
3281 TGCAGTGAGGATCCAAGGCAAGGAATTGCCCTGAGGGAGGTGGCTGCATATGGAGAAAGGCAGTTCTCTGTGGGCAAGGC
3361 CAGCTTGCTTCAGGCTGTAGAGGGAATTTGGTCTGAAGCAACAGGGCATGAACTGTGACTTTGAGCTGCCAGGTTGTCTT
3441 CATCTCAGAACTTTCCTATCCTGGCACTCTCGTTACCTTTCTTCTATACCTTGGCCTCTGTAACTGCAGTCCAAAACAAG
3521 TTACAGCTGCCTTAATCCACTGAGATTCTCTATGAGGATGTACAGAAAAGTTTTCCTGTAATAATTTTGCTTATATGCTA
3601 ACTCTTTTCATGTTAGCAAAGAATATTCTATGAATTAGAATGTTACTGTGGTAGATCTAAAGGAGAATGAACAGAAGGTG
3681 CTGGAGGACCTGTTAAACAATCTCTGGCTATTAAAAAACATCAAGATGAGAATTAAAGGCATATCCTGATATACTTGCCT
3761 GCTTGCACATGAGGCTGGGAGATCCCATGCCTGTTGAAGTTAACTCTAGCCCTGACCTCTATTGATCTTTTGGGAATGAG
3841 GGCTGATTTGAAGGTGCTGTTGCAGGATTTCATTTAGCTGCTGCCAGTTCAAGTGACCTGTCCCCAGGGCTGCAGCTGTA
3921 TCCACCTGATTGCAGTAGGTGAGGGCTAACAGCAGAATTTAAAGTGGACCCTGGGCTGTGGAGCAAAGTGACTATCCATT
4001 TGGACTTTTGGATAATGTGGCAGGAGTCCCAGCTGTTTAATTTCTAGTCACATTTTCCAGAAAGTTGTTCTAAGTTGAGA
4081 TTACTGACAAGATTTCTCAAGGGCAGGACCAGATATGTGAGAGACTTCTAGTTCAGAGCTGACCCCTCTAAGCCTCTGAC
4161 ACTTAAACACGAGTCCTGCTGTCCCCAGCACACAACTGCACTGAAGCCTTGTTCCTCTCGGCTGGTGTAGAGCTCATCTG
4241 CATGTTGTGTGCAGATACCAGTAGCCTCCCTGCTTGAACAGGCCTCTCCTAGGCTAGGCAGGTGTTCAGAGGCATGAAGG
4321 TCTGGGCAGGGGAAGGGCGTCTTCTGAAATGGGAGTTACCAGGTTTTTAAATGCTGCTATTGTTTTATTTACCATTTAAG
4401 GTCTTTTCTATTATATCTGAGTAACTAGTCAGTTTTTCTTACAGTGCTCATAGCAGTTGTATTTGAATTGTATTTTCAGT
4481 GAAATTTGTTTTACATTGCCATTTAAAATTGGCCTTTAACAGCTTCCCAACTAGCTTATAAGATTTTTTTTTTTAATGAA
4561 AACATAACCCATGAGGCTCAGATGCTGTTGAAGAAATAAATGGTATGTTGCTGCTGACAGTAGTGCTTGCCTATTGTAAC
4641 AGCATTGGTTCTGCTGTAGCCTCGGTGACCATTTAAGTTGAATAAATCTGTCATTTTCACCCACAAACAGTTGTTGAGCC
4721 CCTGGATTTGGGTTGTCACTGTGGTTCTCCTGCCAGTGCTATAATCCAGTGTCGTAGGTGCAGGGTATGAATCAGCTCAG
4801 CCTCTTAGGAGAGAGGGGCTCTCAGCGAGGAGGGGGCGGGGGGGGGGTCACTATTTATCTTCCAGAGGCAGGGTTCATGG
4881 ATTCCTGATGTTTAGAGGCGGAAGGGACCTTAGGTCACCTACTTCCACGGTTTTCATACTGTTCTCTGGGGCCTCGTGGA
4961 GAGGGAGCCTCCAGGCCCATTCAAAGCTTTATTAGATTTAAAAGTAAGATCTGGTATGAAGAAAGGTTTTGTTTGTTTCT
5041 TAAAATAAAAAGTCTGAAAATCACTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uaCUCUCAA-AAAAUG-AACGGUcu 5'
            || | || |||||| ||||||  
Target 5' gtGAAATTTGTTTTACATTGCCAtt 3'
 4479 - 4503 153.00 -10.30
2 
miRNA  3' uacucucaaaaaaugAACGGUCu 5'
                         ||||||| 
Target 5' atggaagaccaagggTTGCCAGg 3'
 263 - 285 140.00 -14.20
3 
miRNA  3' uacucucAAAAAAUGAAC--GGUCu 5'
                 ||||| |||||  |||| 
Target 5' gatcccaTTTTTAACTTGACCCAGa 3'
 708 - 732 132.00 -12.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30149009 41 COSMIC
COSN15783555 77 COSMIC
COSN13909455 102 COSMIC
COSN13909457 105 COSMIC
COSN30503394 144 COSMIC
COSN30158061 201 COSMIC
COSN1260673 262 COSMIC
COSN27486553 262 COSMIC
COSN28793448 318 COSMIC
COSN8997261 538 COSMIC
COSN17075892 577 COSMIC
COSN10029400 671 COSMIC
COSN26664795 878 COSMIC
COSN31531793 963 COSMIC
COSN31582862 1188 COSMIC
COSN26637318 1194 COSMIC
COSN28457157 1273 COSMIC
COSN1897052 1389 COSMIC
COSN31486306 1392 COSMIC
COSN31597367 1578 COSMIC
COSN31484796 1607 COSMIC
COSN30542259 1645 COSMIC
COSN28663199 1671 COSMIC
COSN26481993 1813 COSMIC
COSN15585972 2396 COSMIC
COSN32170803 2684 COSMIC
COSN19187273 2844 COSMIC
COSN22505731 3290 COSMIC
COSN5990807 3388 COSMIC
COSN22766222 3501 COSMIC
COSN22269746 3555 COSMIC
COSN25654035 3592 COSMIC
COSN21785622 3699 COSMIC
COSN21805719 3835 COSMIC
COSN20117348 4542 COSMIC
COSN28943688 4555 COSMIC
COSN16857671 4619 COSMIC
COSN1260674 4832 COSMIC
COSN27286832 4848 COSMIC
COSN27337813 4848 COSMIC
COSN29063703 4848 COSMIC
COSN27431013 4849 COSMIC
rs12537 1671 GWAS
rs41174 4280 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs754355752 6 dbSNP
rs772641960 11 dbSNP
rs764278708 13 dbSNP
rs751653620 14 dbSNP
rs1272646136 15 dbSNP
rs1465504603 16 dbSNP
rs1210895397 18 dbSNP
rs757883073 27 dbSNP
rs113609747 29 dbSNP
rs1432276049 32 dbSNP
rs1446835160 36 dbSNP
rs781531718 38 dbSNP
rs528603691 41 dbSNP
rs200478028 44 dbSNP
rs1313703414 56 dbSNP
rs568468616 61 dbSNP
rs746220322 64 dbSNP
rs769504497 71 dbSNP
rs535898774 72 dbSNP
rs1178813467 73 dbSNP
rs1470214012 78 dbSNP
rs900803896 81 dbSNP
rs115041927 82 dbSNP
rs112814851 90 dbSNP
rs951278547 101 dbSNP
rs768076956 102 dbSNP
rs1000014903 103 dbSNP
rs1310741370 135 dbSNP
rs879791742 138 dbSNP
rs773875152 143 dbSNP
rs539330465 144 dbSNP
rs1016701993 147 dbSNP
rs988655182 157 dbSNP
rs1383881100 158 dbSNP
rs1302485411 173 dbSNP
rs922526757 174 dbSNP
rs1357158731 175 dbSNP
rs1161231005 177 dbSNP
rs1401179566 180 dbSNP
rs1379581321 186 dbSNP
rs1176294875 197 dbSNP
rs1446416059 204 dbSNP
rs955019761 206 dbSNP
rs1204431760 212 dbSNP
rs1180860087 213 dbSNP
rs1482493375 226 dbSNP
rs761883912 228 dbSNP
rs990831719 232 dbSNP
rs1216911262 235 dbSNP
rs1353678877 239 dbSNP
rs916584456 242 dbSNP
rs1242643862 246 dbSNP
rs970700432 246 dbSNP
rs1440728679 247 dbSNP
rs1290455164 248 dbSNP
rs1376742687 248 dbSNP
rs139430397 248 dbSNP
rs1394466372 248 dbSNP
rs200777264 248 dbSNP
rs755847785 248 dbSNP
rs1400360748 255 dbSNP
rs1359888480 261 dbSNP
rs1156693432 262 dbSNP
rs145992551 263 dbSNP
rs982420135 264 dbSNP
rs1475332167 266 dbSNP
rs1163673604 281 dbSNP
rs1421725837 290 dbSNP
rs1263376141 291 dbSNP
rs985106146 292 dbSNP
rs767546118 293 dbSNP
rs548689266 301 dbSNP
rs1225299840 302 dbSNP
rs1490541829 305 dbSNP
rs1264899396 307 dbSNP
rs111541457 309 dbSNP
rs920724725 313 dbSNP
rs1296547232 316 dbSNP
rs41171 318 dbSNP
rs113173466 324 dbSNP
rs1406651928 325 dbSNP
rs1391321232 326 dbSNP
rs1039430668 329 dbSNP
rs1455919721 335 dbSNP
rs896081534 340 dbSNP
rs758604828 347 dbSNP
rs764118263 348 dbSNP
rs1421877089 360 dbSNP
rs183282847 377 dbSNP
rs905944555 379 dbSNP
rs1225034214 381 dbSNP
rs1267246849 384 dbSNP
rs1208200122 386 dbSNP
rs1000722456 387 dbSNP
rs1033106889 394 dbSNP
rs1224378414 395 dbSNP
rs1331662312 409 dbSNP
rs1300494440 410 dbSNP
rs573396380 414 dbSNP
rs958494491 415 dbSNP
rs1012326003 425 dbSNP
rs891585242 426 dbSNP
rs1023668443 431 dbSNP
rs1179095253 433 dbSNP
rs1010044127 437 dbSNP
rs543842352 439 dbSNP
rs562324994 445 dbSNP
rs531260381 446 dbSNP
rs1446905251 448 dbSNP
rs1191998593 449 dbSNP
rs546146776 450 dbSNP
rs568004259 451 dbSNP
rs1018399031 470 dbSNP
rs1480937837 471 dbSNP
rs1175280315 477 dbSNP
rs1255357109 483 dbSNP
rs111582524 486 dbSNP
rs564712862 492 dbSNP
rs1309408154 495 dbSNP
rs753840961 500 dbSNP
rs528650432 504 dbSNP
rs929430318 510 dbSNP
rs983646881 512 dbSNP
rs917486474 514 dbSNP
rs1415409887 517 dbSNP
rs1401881518 531 dbSNP
rs1171368123 532 dbSNP
rs1304826404 534 dbSNP
rs1455843171 538 dbSNP
rs112326125 539 dbSNP
rs1437896358 544 dbSNP
rs781662688 552 dbSNP
rs1245202562 553 dbSNP
rs1044394944 555 dbSNP
rs1442812946 558 dbSNP
rs1255172746 565 dbSNP
rs568608119 567 dbSNP
rs936018814 573 dbSNP
rs1286634125 578 dbSNP
rs1238881987 581 dbSNP
rs374254993 586 dbSNP
rs891895067 587 dbSNP
rs760706734 599 dbSNP
rs1316742660 601 dbSNP
rs1010012882 603 dbSNP
rs551021554 604 dbSNP
rs1241333797 606 dbSNP
rs1261349981 611 dbSNP
rs1047184718 612 dbSNP
rs1361809412 617 dbSNP
rs10212055 625 dbSNP
rs1417950911 626 dbSNP
rs891042359 629 dbSNP
rs539734867 637 dbSNP
rs557725742 639 dbSNP
rs866766527 647 dbSNP
rs1489146602 649 dbSNP
rs1263822161 651 dbSNP
rs1199140389 652 dbSNP
rs566660186 657 dbSNP
rs1215735750 662 dbSNP
rs1487039394 663 dbSNP
rs533781321 667 dbSNP
rs140836436 668 dbSNP
rs906627526 673 dbSNP
rs150155278 689 dbSNP
rs1025801108 690 dbSNP
rs1341451332 699 dbSNP
rs543878137 700 dbSNP
rs1165405206 704 dbSNP
rs114188007 705 dbSNP
rs577527411 708 dbSNP
rs138643940 709 dbSNP
rs1324342804 712 dbSNP
rs989767766 713 dbSNP
rs564673938 730 dbSNP
rs142937499 735 dbSNP
rs1365802384 746 dbSNP
rs950205876 750 dbSNP
rs1424019346 757 dbSNP
rs1478689331 757 dbSNP
rs1393387601 759 dbSNP
rs1307913311 761 dbSNP
rs1476828232 763 dbSNP
rs980723414 775 dbSNP
rs1221744136 778 dbSNP
rs1450467600 779 dbSNP
rs927588136 781 dbSNP
rs922767557 784 dbSNP
rs1278011578 786 dbSNP
rs1217163910 790 dbSNP
rs933744976 795 dbSNP
rs935972164 796 dbSNP
rs9620939 798 dbSNP
rs1329357989 799 dbSNP
rs1264087976 804 dbSNP
rs1481796107 806 dbSNP
rs1331158050 820 dbSNP
rs1466371134 833 dbSNP
rs562243069 836 dbSNP
rs946177188 847 dbSNP
rs1463862380 851 dbSNP
rs1427181212 852 dbSNP
rs1050879406 855 dbSNP
rs1437355669 856 dbSNP
rs1191639349 863 dbSNP
rs539749018 864 dbSNP
rs147241655 867 dbSNP
rs1179939667 873 dbSNP
rs1257021111 881 dbSNP
rs541324762 888 dbSNP
rs1314242315 893 dbSNP
rs1162547137 897 dbSNP
rs1219107133 907 dbSNP
rs948617672 909 dbSNP
rs1311616448 915 dbSNP
rs2285645 919 dbSNP
rs562907964 921 dbSNP
rs533125488 922 dbSNP
rs898439965 926 dbSNP
rs139067701 928 dbSNP
rs1399829341 929 dbSNP
rs995561547 946 dbSNP
rs1004038949 948 dbSNP
rs1025347376 960 dbSNP
rs1031082049 961 dbSNP
rs1413881093 963 dbSNP
rs758237247 964 dbSNP
rs1159997553 967 dbSNP
rs1439772769 974 dbSNP
rs1317222884 976 dbSNP
rs951102592 979 dbSNP
rs1383564870 984 dbSNP
rs1013307704 1003 dbSNP
rs1228277295 1005 dbSNP
rs1238373385 1007 dbSNP
rs892492627 1015 dbSNP
rs1311133936 1017 dbSNP
rs569907854 1020 dbSNP
rs1022576084 1021 dbSNP
rs1228614407 1024 dbSNP
rs964306595 1026 dbSNP
rs1257102130 1034 dbSNP
rs1024732519 1037 dbSNP
rs1030248208 1056 dbSNP
rs1303265667 1056 dbSNP
rs528824229 1067 dbSNP
rs1447003077 1068 dbSNP
rs117875018 1071 dbSNP
rs1299887428 1071 dbSNP
rs112648574 1072 dbSNP
rs529934855 1072 dbSNP
rs980310290 1073 dbSNP
rs41172 1076 dbSNP
rs1460443562 1077 dbSNP
rs957669794 1078 dbSNP
rs962377841 1079 dbSNP
rs990556158 1080 dbSNP
rs1265991410 1084 dbSNP
rs1169468890 1086 dbSNP
rs913271356 1089 dbSNP
rs946061297 1090 dbSNP
rs555023611 1095 dbSNP
rs915547744 1114 dbSNP
rs1284022458 1116 dbSNP
rs1464233767 1120 dbSNP
rs113914050 1121 dbSNP
rs1322616615 1126 dbSNP
rs1312275409 1128 dbSNP
rs192999293 1132 dbSNP
rs1447300557 1133 dbSNP
rs1039561853 1140 dbSNP
rs1301674861 1142 dbSNP
rs572127310 1142 dbSNP
rs1280047266 1147 dbSNP
rs1400495897 1148 dbSNP
rs770662461 1153 dbSNP
rs1286668667 1159 dbSNP
rs1045612234 1162 dbSNP
rs1350109056 1167 dbSNP
rs1163556620 1171 dbSNP
rs1364688441 1181 dbSNP
rs555939498 1185 dbSNP
rs995469777 1188 dbSNP
rs776454279 1189 dbSNP
rs184856026 1192 dbSNP
rs886735634 1194 dbSNP
rs1263309459 1196 dbSNP
rs1477807263 1200 dbSNP
rs1013276651 1201 dbSNP
rs768219183 1205 dbSNP
rs1024702745 1210 dbSNP
rs1211782878 1214 dbSNP
rs892531920 1219 dbSNP
rs1010970124 1229 dbSNP
rs969194837 1231 dbSNP
rs188118923 1235 dbSNP
rs1243833517 1236 dbSNP
rs764365266 1238 dbSNP
rs1486140153 1240 dbSNP
rs1293267366 1244 dbSNP
rs957851754 1256 dbSNP
rs1367637011 1258 dbSNP
rs1292615495 1259 dbSNP
rs1459581972 1260 dbSNP
rs990385472 1266 dbSNP
rs899796429 1269 dbSNP
rs1481263335 1272 dbSNP
rs1171905847 1274 dbSNP
rs1178858992 1293 dbSNP
rs1465430443 1298 dbSNP
rs1430240628 1299 dbSNP
rs1201573395 1304 dbSNP
rs751706862 1307 dbSNP
rs1433870157 1309 dbSNP
rs761886361 1316 dbSNP
rs1266715782 1320 dbSNP
rs1189521562 1324 dbSNP
rs997142133 1329 dbSNP
rs1258943452 1345 dbSNP
rs913502289 1346 dbSNP
rs1199039438 1347 dbSNP
rs1317006733 1349 dbSNP
rs767527274 1350 dbSNP
rs1235271871 1353 dbSNP
rs1312669854 1354 dbSNP
rs1300052115 1355 dbSNP
rs1438058997 1357 dbSNP
rs1378741898 1365 dbSNP
rs1331530803 1369 dbSNP
rs955758589 1371 dbSNP
rs750955707 1372 dbSNP
rs1432153092 1374 dbSNP
rs1004366973 1387 dbSNP
rs1467041328 1391 dbSNP
rs1377540537 1393 dbSNP
rs1171922733 1394 dbSNP
rs557743535 1396 dbSNP
rs967319899 1404 dbSNP
rs1178203268 1414 dbSNP
rs986789988 1417 dbSNP
rs192650083 1420 dbSNP
rs1201939905 1426 dbSNP
rs573607137 1428 dbSNP
rs1255338192 1429 dbSNP
rs1231448032 1434 dbSNP
rs969692736 1436 dbSNP
rs184198794 1439 dbSNP
rs1039934743 1442 dbSNP
rs1238927298 1443 dbSNP
rs1333594760 1445 dbSNP
rs1336615578 1451 dbSNP
rs934510318 1459 dbSNP
rs919735876 1462 dbSNP
rs1052975301 1466 dbSNP
rs1285709156 1473 dbSNP
rs1316943498 1483 dbSNP
rs1421612862 1485 dbSNP
rs1215825904 1487 dbSNP
rs1158092619 1510 dbSNP
rs1468841687 1511 dbSNP
rs1283716085 1515 dbSNP
rs1490798703 1524 dbSNP
rs1189438886 1535 dbSNP
rs1370403276 1535 dbSNP
rs780326511 1540 dbSNP
rs1046991038 1545 dbSNP
rs1256736390 1553 dbSNP
rs1208582266 1554 dbSNP
rs1489003275 1564 dbSNP
rs1199865693 1571 dbSNP
rs1286163032 1578 dbSNP
rs887041445 1579 dbSNP
rs949014102 1584 dbSNP
rs1046124932 1585 dbSNP
rs904932028 1588 dbSNP
rs1001997266 1589 dbSNP
rs1032507396 1591 dbSNP
rs754211027 1592 dbSNP
rs946787658 1596 dbSNP
rs1292009222 1597 dbSNP
rs1477805933 1602 dbSNP
rs1043833052 1604 dbSNP
rs1297720112 1605 dbSNP
rs754651079 1606 dbSNP
rs899871118 1606 dbSNP
rs778709479 1612 dbSNP
rs1189657340 1626 dbSNP
rs1416847209 1636 dbSNP
rs1410281778 1638 dbSNP
rs1478792981 1639 dbSNP
rs1263801448 1643 dbSNP
rs1191936590 1647 dbSNP
rs1401296522 1649 dbSNP
rs1011720955 1653 dbSNP
rs1158574370 1654 dbSNP
rs1020477817 1657 dbSNP
rs967634374 1666 dbSNP
rs12537 1671 dbSNP
rs1271716179 1672 dbSNP
rs1051806720 1675 dbSNP
rs1019613058 1678 dbSNP
rs1330190277 1681 dbSNP
rs1332858425 1681 dbSNP
rs1405030378 1683 dbSNP
rs1392533033 1684 dbSNP
rs1162604498 1689 dbSNP
rs1466990122 1691 dbSNP
rs891396708 1702 dbSNP
rs964394949 1707 dbSNP
rs1004843664 1709 dbSNP
rs1015770284 1716 dbSNP
rs771730457 1719 dbSNP
rs116588341 1728 dbSNP
rs995255417 1730 dbSNP
rs144741450 1732 dbSNP
rs562885405 1736 dbSNP
rs1318968687 1743 dbSNP
rs777377978 1747 dbSNP
rs148549442 1753 dbSNP
rs1373436575 1758 dbSNP
rs1238785429 1764 dbSNP
rs908445173 1770 dbSNP
rs1347719735 1773 dbSNP
rs1275569651 1784 dbSNP
rs1324190048 1791 dbSNP
rs865958725 1794 dbSNP
rs949313757 1795 dbSNP
rs969724115 1796 dbSNP
rs1448744345 1802 dbSNP
rs188349460 1805 dbSNP
rs1046092369 1807 dbSNP
rs1408183560 1814 dbSNP
rs955994659 1824 dbSNP
rs904816336 1832 dbSNP
rs1172725038 1833 dbSNP
rs1361480616 1834 dbSNP
rs937679953 1835 dbSNP
rs1392892753 1847 dbSNP
rs1180074000 1849 dbSNP
rs989095963 1857 dbSNP
rs1288921122 1858 dbSNP
rs1202841383 1867 dbSNP
rs1449610435 1873 dbSNP
rs1444696658 1875 dbSNP
rs914448402 1876 dbSNP
rs1053520492 1878 dbSNP
rs947196539 1885 dbSNP
rs979540869 1888 dbSNP
rs1234748627 1890 dbSNP
rs1241195220 1892 dbSNP
rs893572315 1894 dbSNP
rs1297449636 1899 dbSNP
rs1011689724 1904 dbSNP
rs932706949 1905 dbSNP
rs1020445344 1910 dbSNP
rs560088871 1915 dbSNP
rs1373058120 1919 dbSNP
rs1008396391 1925 dbSNP
rs543736427 1928 dbSNP
rs1379053461 1930 dbSNP
rs1175919374 1931 dbSNP
rs891088390 1935 dbSNP
rs940287169 1940 dbSNP
rs1446940592 1949 dbSNP
rs9983 1955 dbSNP
rs1390492592 1958 dbSNP
rs1288306390 1959 dbSNP
rs898700147 1960 dbSNP
rs1403890599 1962 dbSNP
rs1221870624 1965 dbSNP
rs1305054612 1965 dbSNP
rs1330554101 1967 dbSNP
rs995616581 1967 dbSNP
rs4487184 1968 dbSNP
rs1373532249 1970 dbSNP
rs1471209856 1976 dbSNP
rs1354740083 1993 dbSNP
rs776349178 1994 dbSNP
rs1156423397 1996 dbSNP
rs1407464014 1996 dbSNP
rs181797188 2001 dbSNP
rs1027052467 2004 dbSNP
rs1022693072 2006 dbSNP
rs952800743 2007 dbSNP
rs982603060 2013 dbSNP
rs142924812 2021 dbSNP
rs113797670 2023 dbSNP
rs184925401 2027 dbSNP
rs573861686 2028 dbSNP
rs1353995933 2043 dbSNP
rs1273636941 2052 dbSNP
rs6006325 2060 dbSNP
rs1232444462 2064 dbSNP
rs1216098985 2067 dbSNP
rs772460523 2070 dbSNP
rs369945104 2074 dbSNP
rs563351996 2074 dbSNP
rs1458364576 2088 dbSNP
rs1198131923 2089 dbSNP
rs1382315637 2098 dbSNP
rs1236467900 2104 dbSNP
rs926543690 2109 dbSNP
rs1022762723 2121 dbSNP
rs571289723 2129 dbSNP
rs937676326 2131 dbSNP
rs1021539007 2134 dbSNP
rs968563336 2148 dbSNP
rs974594776 2151 dbSNP
rs542867895 2153 dbSNP
rs760366835 2165 dbSNP
rs914991137 2176 dbSNP
rs1428027188 2181 dbSNP
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rs932762059 2188 dbSNP
rs987249774 2189 dbSNP
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rs1008363905 2201 dbSNP
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rs1372688574 4910 dbSNP
rs1308902354 4915 dbSNP
rs1429297522 4919 dbSNP
rs997519160 4929 dbSNP
rs563748351 4930 dbSNP
rs953409214 4931 dbSNP
rs765823663 4945 dbSNP
rs1190177744 4952 dbSNP
rs1197525219 4956 dbSNP
rs1016369318 4957 dbSNP
rs143009071 4962 dbSNP
rs1235870356 4969 dbSNP
rs539839554 4970 dbSNP
rs971914773 4972 dbSNP
rs1222182407 4999 dbSNP
rs919166216 5012 dbSNP
rs960261929 5014 dbSNP
rs1287395479 5016 dbSNP
rs1409442418 5021 dbSNP
rs776062123 5022 dbSNP
rs1296292307 5025 dbSNP
rs1393115799 5026 dbSNP
rs1467365434 5028 dbSNP
rs1359713341 5037 dbSNP
rs867185203 5040 dbSNP
rs1387463834 5041 dbSNP
rs1325336651 5043 dbSNP
rs528717023 5047 dbSNP
rs1413547441 5065 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545213. RNA binding protein: AGO2. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions Prostate Tissue
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in SRX1760639. RNA binding protein: AGO2. Condition:AGO-CLIP-LNCaP-MDV_A ...

- Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al., 2016, Neoplasia (New York, N.Y.).

Article - Hamilton MP; Rajapakshe KI; Bader DA; Cerne et al.
- Neoplasia (New York, N.Y.), 2016
MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.
LinkOut: [PMID: 27292025]
CLIP-seq Support 1 for dataset GSM545213
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / Control
Location of target site ENST00000333027.3 | 3UTR | UGGAAGACCAAGGGUUGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
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57 hsa-miR-3128 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT080091 C18ORF25 chromosome 18 open reading frame 25 2 6
MIRT109617 KLHL15 kelch like family member 15 2 6
MIRT122644 E2F3 E2F transcription factor 3 2 2
MIRT204532 SLC39A10 solute carrier family 39 member 10 2 2
MIRT221677 ZNRF2 zinc and ring finger 2 2 2
MIRT230763 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 6
MIRT273299 CCNT1 cyclin T1 2 2
MIRT283494 KCTD5 potassium channel tetramerization domain containing 5 2 4
MIRT296656 MRGBP MRG domain binding protein 2 6
MIRT301972 NUP50 nucleoporin 50 2 4
MIRT332732 QSER1 glutamine and serine rich 1 2 2
MIRT456187 ZDHHC6 zinc finger DHHC-type containing 6 2 2
MIRT460334 CAMK4 calcium/calmodulin dependent protein kinase IV 2 6
MIRT478382 DDAH1 dimethylarginine dimethylaminohydrolase 1 2 2
MIRT508130 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT511876 GOLGA7 golgin A7 2 6
MIRT512926 UBL4A ubiquitin like 4A 2 2
MIRT515891 FAM182B family with sequence similarity 182 member B 2 2
MIRT516564 PARP1 poly(ADP-ribose) polymerase 1 2 4
MIRT520203 WASL Wiskott-Aldrich syndrome like 2 2
MIRT525592 ANKRD49 ankyrin repeat domain 49 2 2
MIRT526047 GMDS GDP-mannose 4,6-dehydratase 2 2
MIRT531124 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT533604 TNPO1 transportin 1 2 2
MIRT552632 ZBTB41 zinc finger and BTB domain containing 41 2 2
MIRT555505 PNISR PNN interacting serine and arginine rich protein 2 2
MIRT560185 SPRTN SprT-like N-terminal domain 2 2
MIRT571001 REPS1 RALBP1 associated Eps domain containing 1 2 2
MIRT572913 MTMR3 myotubularin related protein 3 2 2
MIRT615263 DPF2 double PHD fingers 2 2 2
MIRT617721 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617981 ZNF234 zinc finger protein 234 2 4
MIRT618433 MYLK3 myosin light chain kinase 3 2 4
MIRT619670 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT620534 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT621303 YIPF4 Yip1 domain family member 4 2 2
MIRT625058 ZNF556 zinc finger protein 556 2 2
MIRT627224 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT641086 ZKSCAN2 zinc finger with KRAB and SCAN domains 2 2 2
MIRT645192 POLR3F RNA polymerase III subunit F 2 2
MIRT655546 PADI2 peptidyl arginine deiminase 2 2 2
MIRT663660 ZNF486 zinc finger protein 486 2 4
MIRT664038 RPL27A ribosomal protein L27a 2 2
MIRT664095 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT667034 PDE3A phosphodiesterase 3A 2 2
MIRT693811 SEC31A SEC31 homolog A, COPII coat complex component 2 2
MIRT694235 ZNF749 zinc finger protein 749 2 2
MIRT699244 SLC6A8 solute carrier family 6 member 8 2 2
MIRT702577 JARID2 jumonji and AT-rich interaction domain containing 2 2 2
MIRT702960 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT703628 FBXL3 F-box and leucine rich repeat protein 3 2 2
MIRT709931 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT712973 KANSL3 KAT8 regulatory NSL complex subunit 3 2 2
MIRT714884 RAD18 RAD18, E3 ubiquitin protein ligase 2 2
MIRT719140 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT724999 CDC27 cell division cycle 27 2 2
MIRT735830 GREM1 gremlin 1, DAN family BMP antagonist 2 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3128 Ceritinib 57379345 NSC776422 approved resistant High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-3128 Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7)
hsa-mir-3128 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-3128 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-3128 Tamoxifen 2733525 NSC180973 approved resistant cell line (MCF7)
hsa-mir-3128 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-3128 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-3128 Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-3128 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-3128 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-3128 Prednisone/Azathioprine/Methotrexate/Cyclophosphamide/Mycophenolate mofetil resistant tissue (myasthenia gravis)
hsa-miR-3128 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3128 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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