pre-miRNA Information
pre-miRNA hsa-mir-4680   
Genomic Coordinates chr10: 110898090 - 110898155
Description Homo sapiens miR-4680 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4680-5p
Sequence 5| AGAACUCUUGCAGUCUUAGAUGU |27
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1274530692 2 dbSNP
rs780271274 5 dbSNP
rs1461423681 7 dbSNP
rs749729920 8 dbSNP
rs1252920446 10 dbSNP
rs201739274 11 dbSNP
rs774971106 19 dbSNP
rs748132091 22 dbSNP
rs773643180 22 dbSNP
rs1235425484 23 dbSNP
Putative Targets

Gene Information
Gene Symbol ADAMTS18   
Synonyms ADAMTS21, KNO2, MMCAT
Description ADAM metallopeptidase with thrombospondin type 1 motif 18
Transcript NM_199355   
Expression
Putative miRNA Targets on ADAMTS18
3'UTR of ADAMTS18
(miRNA target sites are highlighted)
>ADAMTS18|NM_199355|3'UTR
   1 TCTTGGTGTCCTCCCCAGCACCTTAGGGCCAGGGGCTTACCTTTCAACCTCTAGAGAGACCAGCTGCCTTTGAGACCAGG
  81 AGCTGAGCACCGAGAACCATCTGTGAGCTGCCGCTGTGATGAAGGAGCCTGCTCTGAGGAACAGACAGGTTGCCAGTAGG
 161 CTTCTAGCTCAATTCCCTGAAGCACGTGGTACTCTGAAGCACTTGAAAATGGGAAGCGATGACAAATCTGACTTTAAAAA
 241 AAATCTTTGATTTGCACTGTTATATGCAAGAAGTGGTGAATCACACTGAGATACGTCGATTTGGGGAGAGACCCCCTTTT
 321 GAACTTCAAAGGGTTCAAGGGCAAAGACATCTGTTTTAAAAAGGTCCTTTATGACTTCAGGTCAAAGACTGAGACTCAGA
 401 ACTTTCAAATCTGGATGGAATACCTTGCCTAACTGTTGCGTGGAGTTCACAGTTCGACTAACCCTGTGAACACCCAAGCC
 481 AGGAGTTCTATGAGAAGCCAAATGGTGCTCGCAATTGTGCTTGCTGCTGGACTGGCAAGCTTCATGTTATGTTTATTTGG
 561 TGTGCGTGTGTCTTTATTATTTTGTGTAAACTATATTCTGCTTATAGAGAGTCTCTGAGACTAAAATTGACAACTTGAAA
 641 AGTATTCCAAGGAATATTATGAAAATAGGGCAACATGGACTGTTTAAGATCTCCATGTAATTGAAATTCATGCAAGGAAA
 721 CAACTCATAGAAAAGATAAATATGGATGCCCTTCACATGTTATCAACCTCGTAACTTTTGGTGCTTGCTGAATCAGTCCA
 801 TGAAAAGCTACAGCCCGCTCTTTGGGAATGCTACATACCCATTTCTGGTATTTAAAAAATATCTAGGAGGAGCTAAATGA
 881 CAAAACACAGCAGTGTTTTGAGGGAGAAAGGACCATCATTTATAATGCTCTGTACATACTACCAGAGCTGCTTGGAAAAT
 961 TAAAGGCCACTTGTGGCTTTTTCCTACCAACTGATACGTTTAAATTTGCCCTAGGATTGAGCTAACAGCAAAAAAAAAAA
1041 AAAAAAAAAGAGAGAAAGAAAGGAGTAAACAGTGGTAATAAAAAAATCCATCTGTCTTCTTGCTATGTTAATATTAATAA
1121 ATCATAATATGACAAGACCCTCACTGAATAAGAGTATTTTCAGTCATCAGAAGCCAGCTGTTGGTAGGCATTAATGAGTT
1201 TAAAATTGTTCTCAATTGAAAAAACATCACACTATTTTGCCAAAACCAAAGTAATTATAATACTGTGTCCTCCTGTAATT
1281 TTTTGAGAAGTGGTTATAAAGGGCATATTTACATAAATTCTACTTTATTCCTCAACTTCTTTGATGAATGTAACCCAATT
1361 TTACTTCTTTAAAAAGTCTCAATTCAAGCTGGATTAGCCAGCTCAGCATAATCAACTAGACAGTGGTTTGTTAAATTTAG
1441 CAGCATACTTCGTTCCCATTCTAATTAAAGTCATGAGTTCTTGAATCCCAGAGAAATAATGCTTAGGAACTTCTCTCAAT
1521 CTGCTTGGCTTGGCCTAGAGAAGTGGCCATTTTATCAACAGGAAAAAAAAAAATTTTCTCTACTACAACCCCGTTGCCTT
1601 CTGAAAAACAGCAAGTTATTTCTTTATATAATTATCATTTTATTATTTTATGGAAAATTAATTTATTAATTAATAGCCTA
1681 TTATGTGTTCTCACTTGCTTCTCTAAGTAATATTTTGAGATAAAATGTTGAATAAAACCATGGATTATAGAGAAAAGTCA
1761 AAATATATGTGTAATATTTAATTATTTTATAAGTTTTATAATAAAGTATTCCATTTCTTTATCTTTGAAAAAAAAAAAAA
1841 AAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' uguAGAUUCUGACG-UUCUCAAGa 5'
             |:|:| ||| | |||:|||| 
Target 5' cctTTTGA-ACTTCAAAGGGTTCa 3'
315 - 337 147.00 -9.40
2
miRNA  3' uguaGAUU-CUGACGU-UCUCAAGa 5'
              ||||  ::|||: :|||||| 
Target 5' ttgcCTAACTGTTGCGTGGAGTTCa 3'
425 - 449 143.00 -12.60
3
miRNA  3' ugUAGAUUCUGACGUUCUCAAGa 5'
            | | ||| |  ||:|||||| 
Target 5' acACCCAAG-C--CAGGAGTTCt 3'
470 - 489 140.00 -13.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30481733 3 COSMIC
COSN30170451 13 COSMIC
COSN26965111 15 COSMIC
COSN30455242 16 COSMIC
COSN30518809 24 COSMIC
COSN5837255 31 COSMIC
COSN30450562 48 COSMIC
COSN30104486 55 COSMIC
COSN30456897 56 COSMIC
COSN30193128 76 COSMIC
COSN30477014 80 COSMIC
COSN8865893 97 COSMIC
COSN30145471 101 COSMIC
COSN6094890 113 COSMIC
COSN30525233 128 COSMIC
COSN30526710 152 COSMIC
COSN30159514 164 COSMIC
COSN30193915 169 COSMIC
COSN31573513 172 COSMIC
COSN30530620 185 COSMIC
COSN31484516 188 COSMIC
COSN26601975 235 COSMIC
COSN28821643 262 COSMIC
COSN23734378 274 COSMIC
COSN30544920 317 COSMIC
COSN31486214 373 COSMIC
COSN20631460 402 COSMIC
COSN15668324 411 COSMIC
COSN26572690 455 COSMIC
COSN29527731 679 COSMIC
COSN20310207 702 COSMIC
COSN31541772 749 COSMIC
COSN25040146 799 COSMIC
COSN28808224 952 COSMIC
COSN20113112 1029 COSMIC
COSN15566563 1031 COSMIC
COSN15569403 1048 COSMIC
COSN20113109 1048 COSMIC
COSN20113110 1048 COSMIC
COSN25676085 1089 COSMIC
COSN31482882 1161 COSMIC
COSN1709472 1224 COSMIC
COSN31548477 1367 COSMIC
COSN31522481 1445 COSMIC
COSN31487765 1451 COSMIC
COSN23735450 1463 COSMIC
COSN27583821 1562 COSMIC
COSN32061377 1563 COSMIC
COSN30380936 1573 COSMIC
COSN28111087 1580 COSMIC
COSN30312518 1618 COSMIC
COSN1709471 1759 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs112861388 2 dbSNP
rs1214952070 5 dbSNP
rs746738818 6 dbSNP
rs1379796369 7 dbSNP
rs1167657726 11 dbSNP
rs771423435 14 dbSNP
rs189963396 20 dbSNP
rs370851493 22 dbSNP
rs369219278 24 dbSNP
rs1247757997 26 dbSNP
rs749387164 27 dbSNP
rs778267020 31 dbSNP
rs563300881 32 dbSNP
rs1387630251 36 dbSNP
rs1303638805 39 dbSNP
rs567446984 41 dbSNP
rs549139378 42 dbSNP
rs779633697 43 dbSNP
rs1364131064 45 dbSNP
rs768891881 46 dbSNP
rs544101147 47 dbSNP
rs767926079 48 dbSNP
rs1184925490 49 dbSNP
rs1476434532 50 dbSNP
rs1243717188 51 dbSNP
rs1189907846 54 dbSNP
rs932740630 55 dbSNP
rs1050376561 59 dbSNP
rs1357543299 63 dbSNP
rs1230443958 64 dbSNP
rs773213195 64 dbSNP
rs1487868865 66 dbSNP
rs1253090512 67 dbSNP
rs578254424 68 dbSNP
rs539731458 77 dbSNP
rs1036508060 78 dbSNP
rs1192928741 80 dbSNP
rs940455115 80 dbSNP
rs1451942186 84 dbSNP
rs143121569 91 dbSNP
rs553701978 92 dbSNP
rs979022821 94 dbSNP
rs889707 97 dbSNP
rs779949920 101 dbSNP
rs1319657746 102 dbSNP
rs114413538 105 dbSNP
rs1308515459 108 dbSNP
rs1230603022 110 dbSNP
rs759797504 112 dbSNP
rs549233969 113 dbSNP
rs184293287 121 dbSNP
rs1348118321 122 dbSNP
rs1207700393 124 dbSNP
rs1249109415 130 dbSNP
rs1466506903 131 dbSNP
rs1182344268 134 dbSNP
rs1368132171 136 dbSNP
rs569691351 138 dbSNP
rs965392094 146 dbSNP
rs78203502 153 dbSNP
rs897640157 154 dbSNP
rs1038051811 155 dbSNP
rs1389154902 156 dbSNP
rs941965594 157 dbSNP
rs1413204173 164 dbSNP
rs1334407719 167 dbSNP
rs1008654632 170 dbSNP
rs577454299 171 dbSNP
rs888971357 172 dbSNP
rs371053753 175 dbSNP
rs932645631 176 dbSNP
rs922716988 177 dbSNP
rs994793163 183 dbSNP
rs898818709 185 dbSNP
rs138779514 186 dbSNP
rs192579123 189 dbSNP
rs924814551 191 dbSNP
rs1472286057 200 dbSNP
rs1183223303 203 dbSNP
rs1414491853 203 dbSNP
rs756751484 208 dbSNP
rs1174014822 210 dbSNP
rs895539462 216 dbSNP
rs1288799455 217 dbSNP
rs978898951 218 dbSNP
rs753461424 219 dbSNP
rs927514805 220 dbSNP
rs1288386531 223 dbSNP
rs916133204 224 dbSNP
rs1333975756 226 dbSNP
rs991189125 230 dbSNP
rs763681181 235 dbSNP
rs1301082026 244 dbSNP
rs368614258 245 dbSNP
rs1035872369 257 dbSNP
rs1212906506 260 dbSNP
rs889706 262 dbSNP
rs752258498 264 dbSNP
rs1016117548 265 dbSNP
rs1400897624 266 dbSNP
rs868523371 270 dbSNP
rs1254001285 271 dbSNP
rs1479614186 274 dbSNP
rs1190827417 275 dbSNP
rs1458526412 280 dbSNP
rs1424254452 282 dbSNP
rs1005975308 283 dbSNP
rs1433534625 284 dbSNP
rs889065478 284 dbSNP
rs58328236 286 dbSNP
rs1019631078 287 dbSNP
rs985532194 293 dbSNP
rs996825481 294 dbSNP
rs549041031 295 dbSNP
rs1471895802 297 dbSNP
rs901158913 298 dbSNP
rs1028860220 299 dbSNP
rs1370638828 300 dbSNP
rs114299926 301 dbSNP
rs563242090 303 dbSNP
rs1014863303 304 dbSNP
rs763677092 308 dbSNP
rs924648181 310 dbSNP
rs1489872102 312 dbSNP
rs543453082 313 dbSNP
rs1247537309 314 dbSNP
rs1489565772 317 dbSNP
rs1192711395 319 dbSNP
rs947531862 321 dbSNP
rs759843766 324 dbSNP
rs1388027974 329 dbSNP
rs991722909 329 dbSNP
rs578238702 336 dbSNP
rs960004209 337 dbSNP
rs146052779 346 dbSNP
rs1465557709 347 dbSNP
rs751897669 349 dbSNP
rs569054608 350 dbSNP
rs1056890491 351 dbSNP
rs1001327765 364 dbSNP
rs906025782 375 dbSNP
rs1287550481 378 dbSNP
rs766804309 379 dbSNP
rs1364920984 380 dbSNP
rs868331689 380 dbSNP
rs1436519754 381 dbSNP
rs947547160 387 dbSNP
rs1348290154 391 dbSNP
rs1285831177 397 dbSNP
rs1227841371 399 dbSNP
rs1290600387 401 dbSNP
rs1323745432 404 dbSNP
rs1245472044 412 dbSNP
rs1213891499 414 dbSNP
rs1339337225 417 dbSNP
rs972117217 423 dbSNP
rs112792786 424 dbSNP
rs1189193831 426 dbSNP
rs1436815545 429 dbSNP
rs1053316322 433 dbSNP
rs944022238 438 dbSNP
rs763446431 439 dbSNP
rs912590646 440 dbSNP
rs1399266966 443 dbSNP
rs985501130 448 dbSNP
rs773340076 451 dbSNP
rs1164307857 453 dbSNP
rs1015958168 455 dbSNP
rs889705 456 dbSNP
rs1284914629 457 dbSNP
rs572581568 463 dbSNP
rs1222319961 464 dbSNP
rs953196125 467 dbSNP
rs1330030624 473 dbSNP
rs1028894243 482 dbSNP
rs1209150908 487 dbSNP
rs555708826 488 dbSNP
rs1269708945 491 dbSNP
rs1440690321 497 dbSNP
rs997400130 503 dbSNP
rs1237591921 504 dbSNP
rs1186933563 505 dbSNP
rs1473482472 506 dbSNP
rs1179327710 508 dbSNP
rs901731730 510 dbSNP
rs963562020 511 dbSNP
rs749808867 514 dbSNP
rs542277983 515 dbSNP
rs1361015697 522 dbSNP
rs1408099998 525 dbSNP
rs1287758725 527 dbSNP
rs1014832079 528 dbSNP
rs1230397179 536 dbSNP
rs576141456 539 dbSNP
rs186722263 540 dbSNP
rs1004832651 541 dbSNP
rs1199853251 545 dbSNP
rs1279275897 546 dbSNP
rs1444029156 547 dbSNP
rs3743753 549 dbSNP
rs1472748100 551 dbSNP
rs1229887408 559 dbSNP
rs903303295 564 dbSNP
rs114082723 565 dbSNP
rs1001613521 566 dbSNP
rs776738959 568 dbSNP
rs1427903345 570 dbSNP
rs1333165977 572 dbSNP
rs34779459 576 dbSNP
rs905580427 577 dbSNP
rs916069360 584 dbSNP
rs1321807220 593 dbSNP
rs1011721123 594 dbSNP
rs1232301713 598 dbSNP
rs769973831 609 dbSNP
rs1275155383 617 dbSNP
rs1349979850 618 dbSNP
rs891986020 634 dbSNP
rs1364178129 635 dbSNP
rs1171049111 638 dbSNP
rs1053284846 642 dbSNP
rs1206910541 643 dbSNP
rs527346473 654 dbSNP
rs1264852197 657 dbSNP
rs1450641177 657 dbSNP
rs1200029978 661 dbSNP
rs1379673246 666 dbSNP
rs1448261737 667 dbSNP
rs944325921 670 dbSNP
rs1389664129 671 dbSNP
rs912559787 677 dbSNP
rs1166340726 679 dbSNP
rs1161497592 680 dbSNP
rs1055945164 682 dbSNP
rs1049710701 689 dbSNP
rs1324034175 694 dbSNP
rs938965700 696 dbSNP
rs183062407 701 dbSNP
rs971789835 704 dbSNP
rs1199392871 711 dbSNP
rs1450829632 712 dbSNP
rs1266618396 713 dbSNP
rs940347200 716 dbSNP
rs1342724426 725 dbSNP
rs1207243751 728 dbSNP
rs1229013372 728 dbSNP
rs908988779 735 dbSNP
rs1273343721 740 dbSNP
rs1355221768 740 dbSNP
rs1210047305 741 dbSNP
rs1463809248 744 dbSNP
rs745653525 744 dbSNP
rs192535030 750 dbSNP
rs1249228280 755 dbSNP
rs1459809695 756 dbSNP
rs974587083 762 dbSNP
rs565839667 763 dbSNP
rs976278537 766 dbSNP
rs778764122 768 dbSNP
rs1165188170 770 dbSNP
rs187337508 771 dbSNP
rs1275076414 773 dbSNP
rs1417157258 780 dbSNP
rs1436133427 782 dbSNP
rs528957495 783 dbSNP
rs1344046875 785 dbSNP
rs781302900 790 dbSNP
rs569772279 795 dbSNP
rs998907899 798 dbSNP
rs549951519 800 dbSNP
rs761643382 803 dbSNP
rs3743754 807 dbSNP
rs745667530 810 dbSNP
rs3087939 813 dbSNP
rs541687830 816 dbSNP
rs779651312 817 dbSNP
rs1031838858 821 dbSNP
rs73630433 824 dbSNP
rs1037001746 828 dbSNP
rs370924811 830 dbSNP
rs1410073868 834 dbSNP
rs1472348212 839 dbSNP
rs1483373060 840 dbSNP
rs1158161554 841 dbSNP
rs932650979 842 dbSNP
rs1455340674 845 dbSNP
rs908894073 852 dbSNP
rs1401352447 853 dbSNP
rs898519935 855 dbSNP
rs1038448048 860 dbSNP
rs984396385 862 dbSNP
rs1348257253 863 dbSNP
rs931733461 873 dbSNP
rs774998554 894 dbSNP
rs1319075863 896 dbSNP
rs879367685 898 dbSNP
rs921649801 905 dbSNP
rs908632403 908 dbSNP
rs1218310627 910 dbSNP
rs752204053 911 dbSNP
rs1483841612 912 dbSNP
rs1321816124 913 dbSNP
rs975978176 914 dbSNP
rs1183154237 916 dbSNP
rs983250922 917 dbSNP
rs1420681218 923 dbSNP
rs966271568 926 dbSNP
rs376726639 930 dbSNP
rs757248734 932 dbSNP
rs754596588 933 dbSNP
rs967928599 936 dbSNP
rs560194885 942 dbSNP
rs1368160133 945 dbSNP
rs1408884671 946 dbSNP
rs1021654708 950 dbSNP
rs1011544829 952 dbSNP
rs1217862943 953 dbSNP
rs1375003033 953 dbSNP
rs1350488783 962 dbSNP
rs894571871 964 dbSNP
rs1034845127 966 dbSNP
rs1313309227 970 dbSNP
rs1237121279 971 dbSNP
rs1272649802 973 dbSNP
rs1278301870 973 dbSNP
rs1341504790 979 dbSNP
rs1205902848 990 dbSNP
rs1003066766 991 dbSNP
rs907350484 994 dbSNP
rs1266395384 996 dbSNP
rs550354070 996 dbSNP
rs1036503196 997 dbSNP
rs1454708980 997 dbSNP
rs183841226 998 dbSNP
rs1403611749 1000 dbSNP
rs1168623971 1004 dbSNP
rs1355923869 1008 dbSNP
rs1161181251 1011 dbSNP
rs1293365790 1012 dbSNP
rs1472797109 1014 dbSNP
rs373705923 1015 dbSNP
rs1137647 1019 dbSNP
rs1275140385 1021 dbSNP
rs1473469984 1023 dbSNP
rs1237589367 1024 dbSNP
rs67077678 1024 dbSNP
rs1452501347 1026 dbSNP
rs1221105914 1028 dbSNP
rs1336853555 1028 dbSNP
rs11408636 1029 dbSNP
rs1269930009 1030 dbSNP
rs71137807 1030 dbSNP
rs191089565 1031 dbSNP
rs4038556 1031 dbSNP
rs145045208 1033 dbSNP
rs1395733697 1039 dbSNP
rs1459746896 1040 dbSNP
rs1463364002 1040 dbSNP
rs1270411353 1042 dbSNP
rs1436453183 1043 dbSNP
rs1209681616 1044 dbSNP
rs1328923277 1045 dbSNP
rs1377025353 1046 dbSNP
rs1282713934 1047 dbSNP
rs77325303 1048 dbSNP
rs34438236 1049 dbSNP
rs879907857 1049 dbSNP
rs1157483699 1050 dbSNP
rs1180720834 1050 dbSNP
rs1216399247 1050 dbSNP
rs1243383956 1050 dbSNP
rs1265944572 1050 dbSNP
rs1418131047 1050 dbSNP
rs1464433214 1050 dbSNP
rs1471509178 1050 dbSNP
rs1491554989 1050 dbSNP
rs527534262 1050 dbSNP
rs729653 1050 dbSNP
rs1230564260 1051 dbSNP
rs1331401019 1052 dbSNP
rs1440585818 1052 dbSNP
rs2343048 1052 dbSNP
rs1179531065 1053 dbSNP
rs1411754832 1053 dbSNP
rs1160618627 1054 dbSNP
rs1414340846 1054 dbSNP
rs1423689352 1054 dbSNP
rs1470730840 1054 dbSNP
rs763699626 1054 dbSNP
rs768687192 1055 dbSNP
rs1307625188 1056 dbSNP
rs1408272587 1056 dbSNP
rs201566322 1056 dbSNP
rs747735 1056 dbSNP
rs1491213515 1057 dbSNP
rs1349391833 1058 dbSNP
rs560190410 1058 dbSNP
rs1202347134 1059 dbSNP
rs1250657374 1060 dbSNP
rs1437984131 1060 dbSNP
rs1184441902 1061 dbSNP
rs1245331542 1063 dbSNP
rs139591380 1063 dbSNP
rs370857048 1063 dbSNP
rs747734 1066 dbSNP
rs576804156 1067 dbSNP
rs1450712657 1069 dbSNP
rs1397487253 1072 dbSNP
rs1393351106 1074 dbSNP
rs550247660 1075 dbSNP
rs989912494 1076 dbSNP
rs1329110796 1080 dbSNP
rs1440143420 1082 dbSNP
rs1225552198 1087 dbSNP
rs1250206853 1087 dbSNP
rs1304098164 1087 dbSNP
rs1373044478 1087 dbSNP
rs759170121 1090 dbSNP
rs1382910968 1092 dbSNP
rs1197176863 1094 dbSNP
rs766717514 1094 dbSNP
rs1321480397 1097 dbSNP
rs1451371492 1097 dbSNP
rs1194602551 1105 dbSNP
rs1255475603 1107 dbSNP
rs553900968 1109 dbSNP
rs1048717940 1111 dbSNP
rs1448129871 1111 dbSNP
rs1457528651 1113 dbSNP
rs1373714831 1114 dbSNP
rs1463759460 1114 dbSNP
rs931640159 1117 dbSNP
rs1031390555 1118 dbSNP
rs1156801018 1122 dbSNP
rs921726980 1130 dbSNP
rs1326261822 1131 dbSNP
rs145130921 1138 dbSNP
rs1294312482 1140 dbSNP
rs1182519537 1141 dbSNP
rs1326468711 1143 dbSNP
rs369660472 1144 dbSNP
rs1040511932 1147 dbSNP
rs1442246435 1153 dbSNP
rs1214709626 1157 dbSNP
rs1249442406 1157 dbSNP
rs1188831533 1158 dbSNP
rs1485725386 1159 dbSNP
rs1463988767 1163 dbSNP
rs1208620076 1164 dbSNP
rs1008327666 1175 dbSNP
rs1430408621 1177 dbSNP
rs1185463649 1178 dbSNP
rs763501399 1180 dbSNP
rs1475626997 1183 dbSNP
rs1165451885 1184 dbSNP
rs944586330 1192 dbSNP
rs1028562568 1196 dbSNP
rs1259382158 1205 dbSNP
rs1288190452 1208 dbSNP
rs1385517775 1212 dbSNP
rs878925691 1215 dbSNP
rs1331550115 1224 dbSNP
rs530725522 1225 dbSNP
rs1233521621 1226 dbSNP
rs997542714 1229 dbSNP
rs1238720284 1230 dbSNP
rs750900552 1232 dbSNP
rs898494309 1238 dbSNP
rs565846572 1240 dbSNP
rs1486158453 1242 dbSNP
rs923786124 1243 dbSNP
rs1419818435 1246 dbSNP
rs940013072 1248 dbSNP
rs887164733 1251 dbSNP
rs1364314548 1254 dbSNP
rs1056577547 1258 dbSNP
rs938475046 1258 dbSNP
rs1374292635 1261 dbSNP
rs546579003 1263 dbSNP
rs555493251 1264 dbSNP
rs1348197164 1270 dbSNP
rs980033731 1278 dbSNP
rs1308085952 1279 dbSNP
rs765696014 1282 dbSNP
rs915128427 1284 dbSNP
rs530489343 1285 dbSNP
rs1231700292 1288 dbSNP
rs1348651345 1298 dbSNP
rs948683605 1303 dbSNP
rs1249928477 1306 dbSNP
rs1360984825 1310 dbSNP
rs150292093 1314 dbSNP
rs1438518236 1317 dbSNP
rs958676539 1318 dbSNP
rs1420850640 1320 dbSNP
rs1350331907 1323 dbSNP
rs1162867198 1328 dbSNP
rs1434833682 1329 dbSNP
rs1174905596 1331 dbSNP
rs1368332973 1332 dbSNP
rs1461163711 1333 dbSNP
rs769352130 1335 dbSNP
rs914496336 1338 dbSNP
rs1422164887 1339 dbSNP
rs1303337045 1343 dbSNP
rs989740049 1346 dbSNP
rs1236593204 1348 dbSNP
rs1307191689 1349 dbSNP
rs1478481970 1349 dbSNP
rs1205480620 1350 dbSNP
rs1034466882 1355 dbSNP
rs1391518528 1357 dbSNP
rs1168809872 1367 dbSNP
rs1003381802 1370 dbSNP
rs955719593 1376 dbSNP
rs1252303524 1378 dbSNP
rs1031364499 1379 dbSNP
rs1195021821 1381 dbSNP
rs183100211 1382 dbSNP
rs529831597 1383 dbSNP
rs1015508845 1389 dbSNP
rs549890034 1393 dbSNP
rs955560322 1398 dbSNP
rs1489017001 1401 dbSNP
rs1325570981 1404 dbSNP
rs1443733688 1412 dbSNP
rs1268736257 1415 dbSNP
rs1295579993 1416 dbSNP
rs1361335140 1417 dbSNP
rs1215189777 1420 dbSNP
rs1004970313 1422 dbSNP
rs888061668 1423 dbSNP
rs1211607537 1424 dbSNP
rs1468914032 1426 dbSNP
rs1049299953 1428 dbSNP
rs995825271 1432 dbSNP
rs34371402 1443 dbSNP
rs766820347 1445 dbSNP
rs1485270565 1446 dbSNP
rs1186549032 1449 dbSNP
rs997026224 1451 dbSNP
rs963252574 1452 dbSNP
rs1419023713 1455 dbSNP
rs1463510484 1458 dbSNP
rs1316872704 1460 dbSNP
rs1345076369 1461 dbSNP
rs1040012936 1470 dbSNP
rs1431578016 1472 dbSNP
rs944473693 1473 dbSNP
rs1306052033 1475 dbSNP
rs1377322565 1476 dbSNP
rs1303685652 1477 dbSNP
rs1220683851 1479 dbSNP
rs923675519 1482 dbSNP
rs1042622002 1487 dbSNP
rs776705239 1491 dbSNP
rs1234850387 1493 dbSNP
rs570397492 1508 dbSNP
rs990722799 1513 dbSNP
rs1446284811 1516 dbSNP
rs1215899534 1520 dbSNP
rs1308176883 1523 dbSNP
rs959247283 1525 dbSNP
rs74025765 1527 dbSNP
rs981424333 1529 dbSNP
rs1257721587 1534 dbSNP
rs1177816334 1538 dbSNP
rs971894884 1542 dbSNP
rs768827070 1545 dbSNP
rs1161464377 1546 dbSNP
rs948589369 1546 dbSNP
rs189665795 1547 dbSNP
rs1484355830 1550 dbSNP
rs1252621794 1555 dbSNP
rs1195235834 1556 dbSNP
rs562245631 1558 dbSNP
rs1257932194 1559 dbSNP
rs1027893184 1560 dbSNP
rs1211126686 1561 dbSNP
rs1323955314 1562 dbSNP
rs996399003 1563 dbSNP
rs924313531 1568 dbSNP
rs1224268093 1572 dbSNP
rs185352845 1573 dbSNP
rs542010243 1574 dbSNP
rs921029194 1574 dbSNP
rs975956555 1574 dbSNP
rs1180180028 1577 dbSNP
rs1232661856 1582 dbSNP
rs1040448464 1583 dbSNP
rs1470824261 1585 dbSNP
rs528791324 1590 dbSNP
rs1008529667 1592 dbSNP
rs16945428 1593 dbSNP
rs1393727027 1596 dbSNP
rs1377512131 1599 dbSNP
rs1042142111 1611 dbSNP
rs1408413611 1612 dbSNP
rs1326684184 1614 dbSNP
rs946561009 1617 dbSNP
rs1334914861 1621 dbSNP
rs1442899010 1622 dbSNP
rs146669197 1628 dbSNP
rs1368613181 1632 dbSNP
rs1232946060 1635 dbSNP
rs1054941472 1637 dbSNP
rs1193689047 1639 dbSNP
rs1349689712 1639 dbSNP
rs937911589 1643 dbSNP
rs1438780296 1646 dbSNP
rs1207012696 1647 dbSNP
rs1251684330 1648 dbSNP
rs1174807221 1657 dbSNP
rs1473779177 1662 dbSNP
rs545864985 1662 dbSNP
rs1454173121 1664 dbSNP
rs1194406651 1666 dbSNP
rs1396961902 1667 dbSNP
rs1413269845 1668 dbSNP
rs1181749178 1669 dbSNP
rs1167532414 1670 dbSNP
rs561603353 1675 dbSNP
rs58212517 1675 dbSNP
rs576941720 1676 dbSNP
rs1003548754 1678 dbSNP
rs1333051728 1683 dbSNP
rs115408000 1686 dbSNP
rs981882581 1687 dbSNP
rs540273374 1690 dbSNP
rs1303563704 1692 dbSNP
rs1045168534 1697 dbSNP
rs1332302281 1697 dbSNP
rs1269264488 1698 dbSNP
rs1182645482 1699 dbSNP
rs1461087362 1701 dbSNP
rs1339573562 1702 dbSNP
rs1060547 1703 dbSNP
rs983488467 1707 dbSNP
rs1468477764 1708 dbSNP
rs1214827804 1711 dbSNP
rs1445373051 1717 dbSNP
rs952104218 1720 dbSNP
rs1330972973 1721 dbSNP
rs181905933 1722 dbSNP
rs892998769 1726 dbSNP
rs749048569 1727 dbSNP
rs974842749 1742 dbSNP
rs1415360634 1755 dbSNP
rs965340111 1756 dbSNP
rs1314174906 1757 dbSNP
rs189649341 1763 dbSNP
rs1381676252 1766 dbSNP
rs1334270262 1773 dbSNP
rs1009019850 1774 dbSNP
rs777878317 1775 dbSNP
rs902163238 1777 dbSNP
rs1326714221 1780 dbSNP
rs1220077660 1784 dbSNP
rs1459199299 1785 dbSNP
rs769799978 1788 dbSNP
rs1334586804 1791 dbSNP
rs1234231780 1793 dbSNP
rs1020602674 1795 dbSNP
rs1010678741 1798 dbSNP
rs374830732 1799 dbSNP
rs893520937 1806 dbSNP
rs924532325 1812 dbSNP
rs1370281142 1814 dbSNP
rs1448998021 1817 dbSNP
rs1054971291 1821 dbSNP
rs1186052887 1821 dbSNP
rs1474778210 1823 dbSNP
rs745608690 1827 dbSNP
rs56011164 1828 dbSNP
rs776719553 1829 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545213. RNA binding protein: AGO2. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545213
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / Control
Location of target site ENST00000282849.5 | 3UTR | GAGUUCACAGUUCGACUAAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
133 hsa-miR-4680-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT378771 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT393867 ZDHHC21 zinc finger DHHC-type containing 21 2 4
MIRT446684 C2CD2 C2 calcium dependent domain containing 2 2 2
MIRT447600 MRPL3 mitochondrial ribosomal protein L3 2 2
MIRT450708 RNF152 ring finger protein 152 2 2
MIRT450784 PAPOLG poly(A) polymerase gamma 2 2
MIRT454623 COL23A1 collagen type XXIII alpha 1 chain 2 8
MIRT461620 PTCD3 pentatricopeptide repeat domain 3 2 2
MIRT462695 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT475530 HOXA3 homeobox A3 2 8
MIRT475739 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 4
MIRT489676 CYP1A1 cytochrome P450 family 1 subfamily A member 1 2 2
MIRT490610 SLC47A1 solute carrier family 47 member 1 2 2
MIRT493628 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT496152 RPS15A ribosomal protein S15a 2 2
MIRT499232 VAV3 vav guanine nucleotide exchange factor 3 2 4
MIRT501496 PRICKLE2 prickle planar cell polarity protein 2 2 2
MIRT507163 GAS2L3 growth arrest specific 2 like 3 2 2
MIRT512389 MTRNR2L1 MT-RNR2-like 1 2 4
MIRT514626 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT517474 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT525332 CNGB1 cyclic nucleotide gated channel beta 1 2 2
MIRT526685 BAK1 BCL2 antagonist/killer 1 2 2
MIRT527317 CCR2 C-C motif chemokine receptor 2 2 2
MIRT527608 EYS eyes shut homolog (Drosophila) 2 2
MIRT528794 RAB32 RAB32, member RAS oncogene family 2 2
MIRT531048 TIPARP TCDD inducible poly(ADP-ribose) polymerase 2 2
MIRT532254 TBPL2 TATA-box binding protein like 2 2 2
MIRT533801 TMED7 transmembrane p24 trafficking protein 7 2 4
MIRT535887 MLEC malectin 2 2
MIRT540704 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT544645 PHF8 PHD finger protein 8 2 4
MIRT545760 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT555310 PPP2R5C protein phosphatase 2 regulatory subunit B'gamma 2 2
MIRT555877 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 4
MIRT559507 ARID5B AT-rich interaction domain 5B 2 2
MIRT560448 SLC30A7 solute carrier family 30 member 7 2 2
MIRT561262 ZIK1 zinc finger protein interacting with K protein 1 2 2
MIRT561795 PAWR pro-apoptotic WT1 regulator 2 2
MIRT567007 KLHL15 kelch like family member 15 2 2
MIRT569298 SURF6 surfeit 6 2 2
MIRT570606 MTRNR2L11 MT-RNR2-like 11 2 2
MIRT572888 ADCY2 adenylate cyclase 2 2 2
MIRT573119 ADAMTS18 ADAM metallopeptidase with thrombospondin type 1 motif 18 2 2
MIRT608332 ZNF670 zinc finger protein 670 2 6
MIRT614942 KCNK5 potassium two pore domain channel subfamily K member 5 2 2
MIRT615324 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT618441 ZNF800 zinc finger protein 800 2 2
MIRT620110 HARBI1 harbinger transposase derived 1 2 2
MIRT626008 ZNF517 zinc finger protein 517 2 2
MIRT626626 SLC30A6 solute carrier family 30 member 6 2 2
MIRT627842 POU3F1 POU class 3 homeobox 1 2 2
MIRT628386 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT629305 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT629864 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT630444 IDE insulin degrading enzyme 2 2
MIRT631854 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT633173 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT633477 ZNF724P zinc finger protein 724 2 2
MIRT634395 PLSCR1 phospholipid scramblase 1 2 2
MIRT635538 TRIM72 tripartite motif containing 72 2 2
MIRT635821 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT636169 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT636797 CYB5D1 cytochrome b5 domain containing 1 2 2
MIRT637952 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT645136 HES2 hes family bHLH transcription factor 2 2 2
MIRT645667 ADK adenosine kinase 2 2
MIRT646148 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT647004 NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 2 2
MIRT648187 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT650090 TERF2 telomeric repeat binding factor 2 2 2
MIRT650329 RTN2 reticulon 2 2 2
MIRT654224 RNF165 ring finger protein 165 2 2
MIRT654545 RAB1A RAB1A, member RAS oncogene family 2 2
MIRT656457 MAPK14 mitogen-activated protein kinase 14 2 2
MIRT656828 KLF8 Kruppel like factor 8 2 2
MIRT657112 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT657930 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT659375 CREG2 cellular repressor of E1A stimulated genes 2 2 2
MIRT659833 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT662108 LACTB lactamase beta 2 4
MIRT662789 TBC1D25 TBC1 domain family member 25 2 2
MIRT669501 ARL3 ADP ribosylation factor like GTPase 3 2 2
MIRT669759 ZNF101 zinc finger protein 101 2 4
MIRT669800 GAN gigaxonin 2 2
MIRT670050 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT670299 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670388 EMP2 epithelial membrane protein 2 2 2
MIRT672862 C22orf29 retrotransposon Gag like 10 2 2
MIRT672890 FXN frataxin 2 2
MIRT673210 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT674001 KCNN3 potassium calcium-activated channel subfamily N member 3 2 2
MIRT674163 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674502 TIRAP TIR domain containing adaptor protein 2 2
MIRT675470 NUBPL nucleotide binding protein like 2 2
MIRT675671 TMOD2 tropomodulin 2 2 2
MIRT676006 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676074 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT676386 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676764 SNX2 sorting nexin 2 2 2
MIRT676896 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT676978 ZNF708 zinc finger protein 708 2 2
MIRT677236 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677369 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT677464 PDLIM3 PDZ and LIM domain 3 2 2
MIRT678081 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678093 ATCAY ATCAY, caytaxin 2 2
MIRT678324 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678417 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678521 ZNF347 zinc finger protein 347 2 2
MIRT678700 TRIP11 thyroid hormone receptor interactor 11 2 2
MIRT678829 PDE6A phosphodiesterase 6A 2 2
MIRT679991 RUNDC1 RUN domain containing 1 2 2
MIRT680751 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT681249 ZNF383 zinc finger protein 383 2 2
MIRT681422 GTF3C6 general transcription factor IIIC subunit 6 2 2
MIRT681948 SLC19A3 solute carrier family 19 member 3 2 2
MIRT689278 C5AR2 complement component 5a receptor 2 2 2
MIRT690389 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT691845 OSCAR osteoclast associated, immunoglobulin-like receptor 2 2
MIRT693863 IYD iodotyrosine deiodinase 2 2
MIRT696002 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT701930 MLLT1 MLLT1, super elongation complex subunit 2 2
MIRT702341 KLHL7 kelch like family member 7 2 2
MIRT703557 FKBP14 FK506 binding protein 14 2 2
MIRT705033 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT706341 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT709671 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT711212 EFHB EF-hand domain family member B 2 2
MIRT718342 PURA purine rich element binding protein A 2 2
MIRT722755 SIRPB2 signal regulatory protein beta 2 2 2
MIRT723535 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 2
MIRT724498 BFAR bifunctional apoptosis regulator 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4680-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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