pre-miRNA Information
pre-miRNA hsa-mir-4793   
Genomic Coordinates chr3: 48644194 - 48644280
Description Homo sapiens miR-4793 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4793-3p
Sequence 58| UCUGCACUGUGAGUUGGCUGGCU |80
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSM5899925 14 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs779602935 6 dbSNP
rs757908486 7 dbSNP
rs1422853760 15 dbSNP
rs377721296 23 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZBTB46   
Synonyms BTBD4, BZEL, RINZF, ZNF340, dJ583P15.7, dJ583P15.8
Description zinc finger and BTB domain containing 46
Transcript NM_025224   
Expression
Putative miRNA Targets on ZBTB46
3'UTR of ZBTB46
(miRNA target sites are highlighted)
>ZBTB46|NM_025224|3'UTR
   1 GCCCGCCCGCCGGCAGGGTCGGTGGCTGCCTCGCTCCGTCCACCCGTGTGTGTGTCCGGTGGGTCTCCACTGCGGGGCCA
  81 GGGCCACGCTCACCCCTCTCGCGGCCCCTCCTCTGCTTCCCCCTGAACCCACCCCCCACGGAAACCAGCCCTGCGGGCTA
 161 AGCAGGTGCGACCCCAGCAAGAGGGGTGCTCTGGGACCAGACATGAAGTGAGTTGGGGGAGGGCACAGGGTGGGTTTGAG
 241 TGAAGGGAGAGCACGGTCCTAAGTCCCCAGCAGGTGGTGCGGGTGTGTGAGTGGCCCCTGTGATGGCCAGCCTGGCTTGG
 321 ACACGTGATGGGCCTGTGGCCGGGTCCAGTGGGCACTGGGCGGGGTGGTGTGTTCGGCCCAGAGGCCCCTGGCCTGAGCA
 401 GGTGCAGAGTTTTACAGACACCCGGTCAGCCCGGCTGGAGCCCGCCCTCCCCTCCCCTAGCAGCCAGGTCACTGCCTGTG
 481 GCTGCAGCCGTGGCCCGTGGTGCAGCCGTGGCCCATGGCAGCCTGTAGAATCCAGGTGCACAGAGAGCCCTGCCACCGTC
 561 TTACCTCTGGGCTTTGGTGCTTAACACACAACACAGCTGCAGACCCTGCTGGAGGCCGAGGGCTCCAGGTGCTATCTTAG
 641 GTGGACACAGCCCTGGGGGCTCCTTCCAGGAGGGGACCCTCAGCCCTGTGCCCCCCACCACTTCAGGCCACACCAGGTTC
 721 CCTCTGCAAGGGCCTCGGCTCAGTCGTGTGCACTTCCTCGGAGAGCCTTGGGCTGCCACGTCCACCCCGGGCTCTGCCCG
 801 TCCTGTTCTGCCCATGGCCCAGCCCGGCCGCTCCTGCTGACCCCTCCTGGACGGGCTGGAGCTGGGCTCCTGCCTTTGCT
 881 GCTAACACTGGAGGCGGTGTTCCTAACTGCAGTGTGCTGCTTACACCTCCCCGCGTGGGTAACCAAATTTTTAAGTAGTC
 961 AGAGACATATCGAGGTAGTTACATAAAATTATTTTGTTTGGCATTATTTTTCTCACTCGAAGAAACTATATAGGGTTGTT
1041 TTTCCTTTAGCTTGTGCTCAAGTCCTCTTGCTGTGTTTTCAGAAGCACTCACATGTTCTTTCTTTTCCTGAGTGAAAAGC
1121 AAAGGTCCCACGGTGTGTGCTGTGGTGCACCGCCTGGCTTTGGGGGTCCCGGAGGCAGGCTGCCTAGACTCACAGCCTCG
1201 GGACCGTTGCCACGGCCTGTCTTCTCGTTCAGGCCTGCCTCTGACAGCACTCACCATGAGGACATTCCATCCTTCACCCC
1281 CTCCTCTGGCACAGGCCACCACTGCGGTGCTGTGCCTTCAGATGGGAGGTGGGCGCGGTGGCCTCCTCCTTCCCTCCAGG
1361 ACCTGCCCGTGTGAAGACCCCCCGGAGTGCTGAGCTTCAGGGCTGCGTGGAAAGAGTTTTTACTCTCTTTTTCTAGCCTG
1441 TATACCAGGCTTTTCCCCACATTGTCAGGTAGAGCACCAGCTTCCCTGACCGCTGCTGCTCGGGGAGGGCTGGGGCTGGC
1521 CGGGGGTCCTGTGGAGGAGTACATGGAGGACTCCAGGTACAGCGCAGGAGTCACGGCTTTTGTTTTTTGACATTGGCCCC
1601 CGGTTCTACCAATGACAGGGTGCCCTGGCTGGAGCTGTCATCACACACACCCCTCAGCTCGGAGGCTGTGGGCTCCTCAA
1681 AGCTGGAGAAAGAGGCCAAGATTTTTCTGCACACGGAGTGTGGGGATAGGAGCCGGGCCAAGCGCTGGCCCCTCAGCGGT
1761 GAGCCCTGCCCACTCTTACCGAGCAAGGTGGGTGGCTCTGGCACGAGTCCCCCAGGGGGAGAGCATGGCTACCAGGGAGC
1841 TGCAGCGGAGCCCTCCAGCCCTCACCCCAGGCCAGCCCCACCCCGGCCTCTTTGAGAATTCTCAGAACTTTGTACCTTTC
1921 CCCTGATTTTTAAACCCTTTTTCTAAACAGACTGACTTTCTTACAAAATGCATTTGGAAACCAGACCTTTGCTACCCACC
2001 AATGTCTCTGGGTTTTGTACCAGTCCCTGCTCTCAGGCCACCCTGCCCAGGACCCAGGCCCGCCTCCCCCTCCACACTCA
2081 GGATGTCCTGCTCCATCTGGCCGGCTCACTCCGTGTGGCCTGCCTTTGCTGACCGTTTTGGGGTTCCCCGCCGGAGCTAC
2161 AGGGGCATTTTCTTCCCTAAAACCAACAGTGTCCCACTGACCTCCCCAAGTGTTTGCTGCGTGGCAGATTTCCTGTTCTT
2241 GTTCGCAGTTTGCCGACTGAAGAGTGTGGGATTTCCGAGGCCCAGGTGAGCACGTCCATCTCAGGAGGCGTGGAGGGAAA
2321 AGACATGTCATGAAGGGTTTTTTTTATGTGACTGATTTTTTTTTAAATCGATGTTCAAACTAATAAATATTTTTTTATGA
2401 AGAGGAAAAATGTGTAGATTACATTTCACATTTTGTATTTTTGTTTGTGTCTGTTTGTATTTTGGTGTTTACAACACCAA
2481 AGTGGGAAATACAGTCCATTGGGGATGGTGTTATTTGGGGGCGGGGAGGGGGCAGGGACACCACGATTTTTCTGTCAAGC
2561 TCTGGATCCTGACCAGGTTGTACACTGGGGCTCTCTGAGCTTTGGGACACAGGACACTGCCAGGGCTACGTAGGGAACTG
2641 ACTCAGAAGACGCAGCTTACTGCTTCCAACTTTGCACATCTTCCTCTTTAAAAAACTGAGAAAATGCAAAAACTGGAACT
2721 TTTTGCAATATTATAAAAGAAGTAATCTTATTTTAGCTCATTCTGTGACATGTGCGACTCTTAAGAAAGCCATACTTAAT
2801 GGTGGTGGTTTTTTTTAGATCTTATATTGTGTTTTGTATGCAGCCCTTTTAGAACTACTTGTAGTGAGGGTGCTGTGTGT
2881 GCTTTTCTTAAATATTTATTTTTTTCAACATGCTTTCAACCTGTCAACAAAAACAAAACACACAAAAAAAGGGCAGTGTT
2961 TGAAGATTGTTGATTTTTTTCTGGGGATAATCTATATTATATTGACTTCCTATTACTTATTATAAACCTGTGTTTGTATT
3041 GGAGATGTGTCTACTATTGGGGGAAGAGGTTCTCGTAATCGCTCGGTGGGAAATCATGGCTCTGCCGTCCTGCCTCTCTG
3121 TGGCCGTGGGTTCACGTGGCCTCTGCGGTGAGTCTCCAAGTTTCTGCCTAGGCGCCTGTGCGTTTCCTTTCTGTGACGGG
3201 ATTAGCTTAGACATCCTTGCAAAGCGATCACTTTCAATAAATTGGGAAATTGCTGCTCCAGC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ucgGUCGG--UUGAGUGUCACGUCu 5'
             |||||  ::| |:::|||||| 
Target 5' ctgCAGCCGTGGCCCGTGGTGCAGc 3'
482 - 506 150.00 -23.10
2
miRNA  3' ucGGUCGGUUGAGUGUCACGUCu 5'
            |::||| :  || :|||||| 
Target 5' ccCTGGCCTGAGCA-GGTGCAGa 3'
387 - 408 140.00 -19.80
3
miRNA  3' ucgGUCGGUUGAGUGUC-ACGUCu 5'
             ||  |||  ||||| ||||| 
Target 5' taaCACACAA--CACAGCTGCAGa 3'
582 - 603 132.00 -15.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN8995908 98 COSMIC
COSN30555325 103 COSMIC
COSN9147554 272 COSMIC
COSN31556199 424 COSMIC
COSN28633181 445 COSMIC
COSN31539011 523 COSMIC
COSN31482783 567 COSMIC
COSN26570977 599 COSMIC
COSN31484815 618 COSMIC
COSN29702207 761 COSMIC
COSN31490954 843 COSMIC
COSN31516150 1019 COSMIC
COSN8995907 1144 COSMIC
COSN1252262 1846 COSMIC
COSN29670163 1884 COSMIC
COSN29404120 1950 COSMIC
COSN23158635 2056 COSMIC
COSN15193903 2266 COSMIC
COSN8002758 2269 COSMIC
COSN5977192 2514 COSMIC
COSN29877243 2523 COSMIC
COSN1879882 2556 COSMIC
COSN21504461 2925 COSMIC
COSN30174973 2962 COSMIC
COSN19368589 2974 COSMIC
COSN32065404 2984 COSMIC
COSN31543436 3107 COSMIC
COSN17037879 3181 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1287383988 1 dbSNP
rs375721563 4 dbSNP
rs777532175 5 dbSNP
rs199905755 8 dbSNP
rs373599840 9 dbSNP
rs767041807 11 dbSNP
rs759301065 12 dbSNP
rs1195851560 13 dbSNP
rs1033312283 14 dbSNP
rs1255464598 16 dbSNP
rs184894388 20 dbSNP
rs372238188 21 dbSNP
rs963548614 25 dbSNP
rs1191269386 26 dbSNP
rs763368890 28 dbSNP
rs1244125802 30 dbSNP
rs1203647713 32 dbSNP
rs773855931 33 dbSNP
rs1479739934 35 dbSNP
rs368927107 37 dbSNP
rs527430132 38 dbSNP
rs1402564816 42 dbSNP
rs1338370162 43 dbSNP
rs762364728 44 dbSNP
rs776638901 45 dbSNP
rs373590114 46 dbSNP
rs1335827617 50 dbSNP
rs1458166928 53 dbSNP
rs866989067 57 dbSNP
rs1030343326 58 dbSNP
rs1404247034 70 dbSNP
rs1288969932 72 dbSNP
rs146339881 73 dbSNP
rs1305789304 74 dbSNP
rs1321964294 75 dbSNP
rs1018070600 77 dbSNP
rs531188495 80 dbSNP
rs982043510 87 dbSNP
rs892999227 88 dbSNP
rs776978314 89 dbSNP
rs1433280772 95 dbSNP
rs771261356 96 dbSNP
rs907093700 100 dbSNP
rs112096311 101 dbSNP
rs1427958312 102 dbSNP
rs967260697 103 dbSNP
rs1165773422 119 dbSNP
rs1363463615 121 dbSNP
rs1423817462 123 dbSNP
rs1308520375 124 dbSNP
rs543778125 130 dbSNP
rs1356231256 131 dbSNP
rs1439324441 132 dbSNP
rs1417539074 133 dbSNP
rs1025264075 135 dbSNP
rs1196095338 137 dbSNP
rs1478235479 138 dbSNP
rs948356284 139 dbSNP
rs1247688301 140 dbSNP
rs1312513846 147 dbSNP
rs992811673 153 dbSNP
rs1245724918 154 dbSNP
rs959611680 155 dbSNP
rs1440059496 157 dbSNP
rs1203120609 158 dbSNP
rs35982738 162 dbSNP
rs1461869747 165 dbSNP
rs941093991 166 dbSNP
rs909411672 168 dbSNP
rs983552301 169 dbSNP
rs367848677 170 dbSNP
rs1408127111 178 dbSNP
rs762980151 179 dbSNP
rs1169712843 184 dbSNP
rs1203781964 192 dbSNP
rs181952555 194 dbSNP
rs1279607375 203 dbSNP
rs868462709 204 dbSNP
rs1218723425 206 dbSNP
rs1334227761 219 dbSNP
rs1381598750 221 dbSNP
rs1354387276 224 dbSNP
rs773919670 228 dbSNP
rs976116281 229 dbSNP
rs1341984890 230 dbSNP
rs965106951 231 dbSNP
rs1272976449 232 dbSNP
rs1324326922 233 dbSNP
rs768168623 245 dbSNP
rs1015335883 249 dbSNP
rs1381845249 252 dbSNP
rs572243495 254 dbSNP
rs890948474 255 dbSNP
rs1050916592 258 dbSNP
rs1480692031 259 dbSNP
rs543059700 267 dbSNP
rs1429932902 277 dbSNP
rs1470635749 278 dbSNP
rs1173637600 280 dbSNP
rs899722454 281 dbSNP
rs775508001 284 dbSNP
rs936660139 291 dbSNP
rs1466239974 292 dbSNP
rs925392589 293 dbSNP
rs1429105212 295 dbSNP
rs1042448539 296 dbSNP
rs1346711970 300 dbSNP
rs1417362375 300 dbSNP
rs1186142778 313 dbSNP
rs945598380 314 dbSNP
rs545411452 324 dbSNP
rs907128415 325 dbSNP
rs992316280 341 dbSNP
rs1176538563 342 dbSNP
rs1046096508 349 dbSNP
rs769855438 361 dbSNP
rs745866721 362 dbSNP
rs866071980 363 dbSNP
rs1259951754 364 dbSNP
rs1197257343 365 dbSNP
rs973759459 370 dbSNP
rs1470236884 371 dbSNP
rs576380378 375 dbSNP
rs962370421 376 dbSNP
rs1399263029 378 dbSNP
rs1015388413 389 dbSNP
rs1297979606 399 dbSNP
rs143661395 407 dbSNP
rs941124596 407 dbSNP
rs1407283496 419 dbSNP
rs955109819 420 dbSNP
rs1029926907 423 dbSNP
rs140029672 424 dbSNP
rs1281431576 425 dbSNP
rs1348811139 429 dbSNP
rs116905074 430 dbSNP
rs554050854 433 dbSNP
rs1490792584 440 dbSNP
rs976779537 443 dbSNP
rs1268138049 444 dbSNP
rs1313805990 447 dbSNP
rs1437859944 448 dbSNP
rs964978596 452 dbSNP
rs1361639198 453 dbSNP
rs910570507 456 dbSNP
rs1163894513 459 dbSNP
rs1386217456 459 dbSNP
rs990127553 468 dbSNP
rs1371765750 470 dbSNP
rs1301784435 476 dbSNP
rs1000860020 482 dbSNP
rs1391968427 484 dbSNP
rs533960405 488 dbSNP
rs903855045 489 dbSNP
rs571396531 490 dbSNP
rs945471772 492 dbSNP
rs1316048101 496 dbSNP
rs1361285045 497 dbSNP
rs1251507831 500 dbSNP
rs971678852 501 dbSNP
rs1480921396 502 dbSNP
rs917980410 507 dbSNP
rs747222245 508 dbSNP
rs1436773074 512 dbSNP
rs1163051766 515 dbSNP
rs1446762233 519 dbSNP
rs1459694650 519 dbSNP
rs894361502 525 dbSNP
rs1369284530 526 dbSNP
rs551210801 528 dbSNP
rs1462929341 538 dbSNP
rs1170196121 541 dbSNP
rs1394381597 543 dbSNP
rs1158019715 546 dbSNP
rs1446176951 547 dbSNP
rs1337583230 555 dbSNP
rs926902942 557 dbSNP
rs974316405 558 dbSNP
rs886867404 571 dbSNP
rs962924496 573 dbSNP
rs1229492324 576 dbSNP
rs1467634765 594 dbSNP
rs1338117544 597 dbSNP
rs1203769029 599 dbSNP
rs1264540092 604 dbSNP
rs1459694067 617 dbSNP
rs531405070 618 dbSNP
rs908212994 633 dbSNP
rs757516040 634 dbSNP
rs923463938 636 dbSNP
rs777881566 642 dbSNP
rs1371875512 648 dbSNP
rs1356523578 650 dbSNP
rs371294520 659 dbSNP
rs1177257221 662 dbSNP
rs1408475922 666 dbSNP
rs1029399726 672 dbSNP
rs1259820926 673 dbSNP
rs997106705 675 dbSNP
rs1040519380 679 dbSNP
rs1238724804 689 dbSNP
rs1352029511 696 dbSNP
rs1362360868 697 dbSNP
rs943636648 697 dbSNP
rs1293281494 702 dbSNP
rs963842804 704 dbSNP
rs1224117622 711 dbSNP
rs1264442154 712 dbSNP
rs568771770 724 dbSNP
rs990158571 727 dbSNP
rs758446704 731 dbSNP
rs1486371122 732 dbSNP
rs1370320586 733 dbSNP
rs977935001 736 dbSNP
rs548914245 737 dbSNP
rs556731119 738 dbSNP
rs1024570152 739 dbSNP
rs1391662965 741 dbSNP
rs903068553 745 dbSNP
rs73141857 746 dbSNP
rs1009558140 749 dbSNP
rs1346023929 756 dbSNP
rs896587816 759 dbSNP
rs561235775 760 dbSNP
rs561437937 762 dbSNP
rs1159163682 763 dbSNP
rs1453660560 764 dbSNP
rs1393193483 766 dbSNP
rs1200319126 773 dbSNP
rs1451702091 779 dbSNP
rs146046476 780 dbSNP
rs375298018 781 dbSNP
rs905370560 788 dbSNP
rs1038510791 789 dbSNP
rs1284307268 790 dbSNP
rs1488196706 792 dbSNP
rs1223841402 799 dbSNP
rs1005417311 800 dbSNP
rs537088005 821 dbSNP
rs1203052625 825 dbSNP
rs886813445 826 dbSNP
rs1288675236 828 dbSNP
rs1025244841 829 dbSNP
rs765370756 831 dbSNP
rs908763011 834 dbSNP
rs1304824000 839 dbSNP
rs1347709314 840 dbSNP
rs1363655935 840 dbSNP
rs1298250598 844 dbSNP
rs1374962827 846 dbSNP
rs982883298 849 dbSNP
rs1308132075 851 dbSNP
rs933652376 852 dbSNP
rs565447931 853 dbSNP
rs943518458 854 dbSNP
rs1294500501 857 dbSNP
rs1320439159 862 dbSNP
rs1221553812 866 dbSNP
rs1305290513 868 dbSNP
rs975181202 869 dbSNP
rs545186505 870 dbSNP
rs149561929 875 dbSNP
rs1298509278 880 dbSNP
rs1444955635 884 dbSNP
rs1433898615 886 dbSNP
rs556329800 890 dbSNP
rs978536386 893 dbSNP
rs924633966 895 dbSNP
rs1404687427 896 dbSNP
rs977418832 897 dbSNP
rs541743302 899 dbSNP
rs967296793 903 dbSNP
rs1330213158 904 dbSNP
rs1383075318 904 dbSNP
rs1020183080 907 dbSNP
rs1010023427 910 dbSNP
rs1317596754 912 dbSNP
rs1399923417 913 dbSNP
rs543035321 914 dbSNP
rs950194302 922 dbSNP
rs896480420 927 dbSNP
rs991738825 932 dbSNP
rs574018656 933 dbSNP
rs554087191 934 dbSNP
rs1372069840 935 dbSNP
rs1190562690 949 dbSNP
rs138109392 956 dbSNP
rs1263460312 962 dbSNP
rs1472367300 967 dbSNP
rs1194792728 970 dbSNP
rs1421597264 972 dbSNP
rs1463544674 974 dbSNP
rs1169334366 978 dbSNP
rs755467007 980 dbSNP
rs1016720006 981 dbSNP
rs1277084446 982 dbSNP
rs1202773915 984 dbSNP
rs905257641 1001 dbSNP
rs951272662 1014 dbSNP
rs1345791133 1016 dbSNP
rs572382603 1018 dbSNP
rs571371307 1019 dbSNP
rs1302934162 1024 dbSNP
rs1217410606 1025 dbSNP
rs150793843 1025 dbSNP
rs1342560061 1030 dbSNP
rs537550782 1035 dbSNP
rs1047305682 1049 dbSNP
rs1441585437 1057 dbSNP
rs190510943 1064 dbSNP
rs1007052050 1065 dbSNP
rs1413921535 1071 dbSNP
rs185315851 1073 dbSNP
rs761286406 1091 dbSNP
rs528841896 1092 dbSNP
rs1481147611 1094 dbSNP
rs1170392066 1099 dbSNP
rs868609851 1102 dbSNP
rs1395701346 1106 dbSNP
rs1347375958 1107 dbSNP
rs181754548 1107 dbSNP
rs1167836140 1109 dbSNP
rs1298162623 1114 dbSNP
rs1346190921 1118 dbSNP
rs1225456821 1122 dbSNP
rs41278200 1125 dbSNP
rs967180813 1128 dbSNP
rs768462074 1131 dbSNP
rs527944649 1132 dbSNP
rs781052221 1134 dbSNP
rs1490680419 1136 dbSNP
rs992765306 1137 dbSNP
rs1236142733 1138 dbSNP
rs1470301861 1139 dbSNP
rs991627507 1148 dbSNP
rs760974986 1151 dbSNP
rs937407217 1152 dbSNP
rs1250470960 1154 dbSNP
rs960187697 1157 dbSNP
rs1366752996 1167 dbSNP
rs565347326 1169 dbSNP
rs551948822 1170 dbSNP
rs1002178661 1171 dbSNP
rs969491775 1175 dbSNP
rs1017013890 1181 dbSNP
rs1320161078 1189 dbSNP
rs1351171960 1193 dbSNP
rs1239173150 1194 dbSNP
rs1258924284 1195 dbSNP
rs1005764518 1199 dbSNP
rs983897273 1200 dbSNP
rs951303878 1205 dbSNP
rs531754066 1206 dbSNP
rs774001246 1210 dbSNP
rs545185449 1213 dbSNP
rs543074240 1214 dbSNP
rs1018341548 1216 dbSNP
rs1386310180 1226 dbSNP
rs1006674807 1227 dbSNP
rs6011075 1232 dbSNP
rs574106118 1237 dbSNP
rs998451283 1245 dbSNP
rs1390050312 1250 dbSNP
rs1410625364 1256 dbSNP
rs762482590 1260 dbSNP
rs1329256301 1262 dbSNP
rs1333544716 1263 dbSNP
rs1448309703 1263 dbSNP
rs775133595 1264 dbSNP
rs1315458181 1267 dbSNP
rs1384787193 1271 dbSNP
rs1242479481 1272 dbSNP
rs1033195087 1278 dbSNP
rs1339421350 1283 dbSNP
rs1000324298 1284 dbSNP
rs901399450 1290 dbSNP
rs6062306 1294 dbSNP
rs77713714 1305 dbSNP
rs746636210 1306 dbSNP
rs1244091726 1308 dbSNP
rs540545870 1309 dbSNP
rs577824554 1310 dbSNP
rs1368414005 1321 dbSNP
rs746404085 1334 dbSNP
rs779350638 1335 dbSNP
rs771468402 1336 dbSNP
rs1380199417 1337 dbSNP
rs909932140 1343 dbSNP
rs2296763 1344 dbSNP
rs913066221 1346 dbSNP
rs929846422 1354 dbSNP
rs993045312 1357 dbSNP
rs538033669 1368 dbSNP
rs776749500 1369 dbSNP
rs1275746596 1378 dbSNP
rs1203860154 1380 dbSNP
rs575276183 1383 dbSNP
rs189788875 1384 dbSNP
rs557191269 1384 dbSNP
rs754941198 1384 dbSNP
rs770712045 1392 dbSNP
rs1450019289 1394 dbSNP
rs1292331511 1398 dbSNP
rs184914442 1403 dbSNP
rs535148751 1406 dbSNP
rs951506767 1407 dbSNP
rs1379605532 1408 dbSNP
rs1242300207 1410 dbSNP
rs1377569927 1417 dbSNP
rs746793395 1427 dbSNP
rs1324558421 1429 dbSNP
rs1302042959 1438 dbSNP
rs1385478364 1443 dbSNP
rs777987233 1448 dbSNP
rs1351207884 1454 dbSNP
rs1296295604 1456 dbSNP
rs191618092 1462 dbSNP
rs1020851892 1464 dbSNP
rs1014536454 1466 dbSNP
rs1323857412 1470 dbSNP
rs1232148926 1473 dbSNP
rs758546338 1481 dbSNP
rs998731997 1484 dbSNP
rs901448510 1491 dbSNP
rs748430132 1492 dbSNP
rs1488845635 1493 dbSNP
rs1380150558 1501 dbSNP
rs375333391 1502 dbSNP
rs1487970858 1505 dbSNP
rs904204048 1508 dbSNP
rs1001456319 1509 dbSNP
rs888441511 1512 dbSNP
rs1042662322 1513 dbSNP
rs1364115690 1521 dbSNP
rs945832979 1522 dbSNP
rs1248650333 1528 dbSNP
rs1359827631 1531 dbSNP
rs1405552706 1533 dbSNP
rs186869271 1537 dbSNP
rs918458615 1542 dbSNP
rs78875871 1543 dbSNP
rs1307303936 1546 dbSNP
rs1218522243 1553 dbSNP
rs938497611 1555 dbSNP
rs927236792 1563 dbSNP
rs571900699 1564 dbSNP
rs963258070 1567 dbSNP
rs376326323 1574 dbSNP
rs911088725 1575 dbSNP
rs1302606043 1576 dbSNP
rs1487562710 1577 dbSNP
rs1190776921 1592 dbSNP
rs755094950 1595 dbSNP
rs1369152549 1597 dbSNP
rs1176539688 1598 dbSNP
rs1379519585 1599 dbSNP
rs531912721 1601 dbSNP
rs568056145 1602 dbSNP
rs957723235 1606 dbSNP
rs951509406 1612 dbSNP
rs1298338695 1613 dbSNP
rs1378661980 1614 dbSNP
rs977858871 1615 dbSNP
rs966848792 1616 dbSNP
rs1431316884 1620 dbSNP
rs1229365665 1622 dbSNP
rs1292665727 1626 dbSNP
rs1319939968 1628 dbSNP
rs1026130513 1639 dbSNP
rs1220929148 1640 dbSNP
rs754306701 1644 dbSNP
rs1020464494 1650 dbSNP
rs1197037419 1651 dbSNP
rs1237305957 1654 dbSNP
rs965919926 1656 dbSNP
rs556576573 1660 dbSNP
rs1183478824 1661 dbSNP
rs960328596 1667 dbSNP
rs1422662251 1678 dbSNP
rs1170532667 1679 dbSNP
rs1401925048 1682 dbSNP
rs1007097215 1686 dbSNP
rs904759480 1690 dbSNP
rs11904950 1691 dbSNP
rs1021256853 1692 dbSNP
rs1010301737 1693 dbSNP
rs891569973 1695 dbSNP
rs1026931244 1697 dbSNP
rs536275833 1700 dbSNP
rs938564273 1714 dbSNP
rs529368681 1715 dbSNP
rs897209622 1718 dbSNP
rs1257693360 1719 dbSNP
rs1044213807 1720 dbSNP
rs1211980396 1722 dbSNP
rs1235591473 1723 dbSNP
rs941945197 1727 dbSNP
rs1482880868 1728 dbSNP
rs909101354 1734 dbSNP
rs145886711 1735 dbSNP
rs889614364 1739 dbSNP
rs750754681 1742 dbSNP
rs1169441538 1743 dbSNP
rs767988811 1744 dbSNP
rs762680078 1751 dbSNP
rs34561851 1753 dbSNP
rs1313429690 1757 dbSNP
rs777809714 1758 dbSNP
rs1299374315 1767 dbSNP
rs1447902246 1767 dbSNP
rs1342398214 1769 dbSNP
rs1216892600 1772 dbSNP
rs1213486184 1775 dbSNP
rs1337909954 1778 dbSNP
rs1279721783 1779 dbSNP
rs2281925 1780 dbSNP
rs965392385 1781 dbSNP
rs1217201818 1783 dbSNP
rs1018414820 1791 dbSNP
rs553867178 1803 dbSNP
rs1302761819 1804 dbSNP
rs985561801 1805 dbSNP
rs1361410249 1809 dbSNP
rs968968227 1810 dbSNP
rs577897038 1816 dbSNP
rs6010637 1821 dbSNP
rs1421722107 1829 dbSNP
rs1173140794 1833 dbSNP
rs544101714 1847 dbSNP
rs891449580 1848 dbSNP
rs1434511715 1852 dbSNP
rs1035330340 1856 dbSNP
rs1262957987 1858 dbSNP
rs980351507 1863 dbSNP
rs1398769255 1876 dbSNP
rs1297644912 1879 dbSNP
rs1003038774 1884 dbSNP
rs575416283 1885 dbSNP
rs1273333307 1889 dbSNP
rs1179916335 1894 dbSNP
rs1343975351 1896 dbSNP
rs1044264174 1909 dbSNP
rs1351398003 1912 dbSNP
rs759148577 1912 dbSNP
rs1484158718 1913 dbSNP
rs1238017591 1916 dbSNP
rs1289931838 1917 dbSNP
rs941830408 1920 dbSNP
rs1196247289 1925 dbSNP
rs752876942 1935 dbSNP
rs897243466 1945 dbSNP
rs1373309596 1947 dbSNP
rs1315581036 1949 dbSNP
rs113082683 1954 dbSNP
rs1008307807 1960 dbSNP
rs879607086 1960 dbSNP
rs1048098351 1962 dbSNP
rs1049575397 1997 dbSNP
rs936585154 2002 dbSNP
rs1370517111 2004 dbSNP
rs1320756809 2010 dbSNP
rs929203995 2015 dbSNP
rs1312370308 2016 dbSNP
rs1394686108 2017 dbSNP
rs192624162 2020 dbSNP
rs1381911348 2021 dbSNP
rs918584900 2029 dbSNP
rs1239284785 2034 dbSNP
rs1203714295 2037 dbSNP
rs1303980144 2038 dbSNP
rs535184303 2046 dbSNP
rs1207555323 2052 dbSNP
rs1042063826 2053 dbSNP
rs1398282648 2054 dbSNP
rs1200197945 2055 dbSNP
rs2427537 2056 dbSNP
rs1466287764 2058 dbSNP
rs750218197 2061 dbSNP
rs1181664562 2062 dbSNP
rs760733112 2062 dbSNP
rs917589434 2064 dbSNP
rs1162387777 2068 dbSNP
rs552591133 2069 dbSNP
rs937764559 2072 dbSNP
rs927481069 2073 dbSNP
rs1333652280 2077 dbSNP
rs552442575 2078 dbSNP
rs1390618482 2081 dbSNP
rs761778191 2085 dbSNP
rs1414417927 2088 dbSNP
rs1342190773 2092 dbSNP
rs539404390 2097 dbSNP
rs911291808 2099 dbSNP
rs370118579 2102 dbSNP
rs968858395 2103 dbSNP
rs1220047403 2109 dbSNP
rs1255788947 2110 dbSNP
rs1456678650 2111 dbSNP
rs914864513 2112 dbSNP
rs771906946 2113 dbSNP
rs188965914 2116 dbSNP
rs956278860 2118 dbSNP
rs920142008 2119 dbSNP
rs548540565 2134 dbSNP
rs1035783881 2135 dbSNP
rs1019591966 2140 dbSNP
rs1461733406 2143 dbSNP
rs1002512247 2149 dbSNP
rs1404147626 2150 dbSNP
rs969824587 2150 dbSNP
rs1022703409 2151 dbSNP
rs1006091799 2152 dbSNP
rs77040074 2153 dbSNP
rs1401326546 2162 dbSNP
rs1028178908 2165 dbSNP
rs142017999 2166 dbSNP
rs36080013 2166 dbSNP
rs1263336130 2169 dbSNP
rs569484063 2173 dbSNP
rs1233578982 2210 dbSNP
rs1047517251 2211 dbSNP
rs993839701 2212 dbSNP
rs1347614960 2216 dbSNP
rs1000661487 2220 dbSNP
rs901729645 2221 dbSNP
rs1316342063 2225 dbSNP
rs1240130143 2229 dbSNP
rs1261198116 2234 dbSNP
rs538717492 2234 dbSNP
rs1042737713 2239 dbSNP
rs1041470151 2244 dbSNP
rs944020865 2245 dbSNP
rs911348804 2254 dbSNP
rs1379115816 2262 dbSNP
rs1464378866 2264 dbSNP
rs1172877091 2266 dbSNP
rs1421498028 2267 dbSNP
rs1295782688 2276 dbSNP
rs748342250 2277 dbSNP
rs896170478 2279 dbSNP
rs538278143 2281 dbSNP
rs947442720 2284 dbSNP
rs538797888 2293 dbSNP
rs549554069 2294 dbSNP
rs1280151085 2298 dbSNP
rs1044548137 2300 dbSNP
rs931512743 2303 dbSNP
rs988972496 2304 dbSNP
rs1350323648 2309 dbSNP
rs763646520 2310 dbSNP
rs928890874 2313 dbSNP
rs529459120 2320 dbSNP
rs137909268 2324 dbSNP
rs1022603541 2325 dbSNP
rs569788531 2326 dbSNP
rs558383232 2327 dbSNP
rs951805482 2327 dbSNP
rs1344041677 2334 dbSNP
rs1457979877 2335 dbSNP
rs1026578070 2337 dbSNP
rs993330231 2345 dbSNP
rs1020775121 2346 dbSNP
rs1378165114 2346 dbSNP
rs967898839 2346 dbSNP
rs1264785614 2347 dbSNP
rs1316357470 2347 dbSNP
rs1491164706 2347 dbSNP
rs112583493 2348 dbSNP
rs1489662409 2351 dbSNP
rs1213343392 2353 dbSNP
rs896382648 2355 dbSNP
rs1056538321 2357 dbSNP
rs1407166949 2358 dbSNP
rs901779104 2364 dbSNP
rs1001793356 2365 dbSNP
rs1366255141 2366 dbSNP
rs1040263605 2369 dbSNP
rs1331657146 2384 dbSNP
rs1401421969 2385 dbSNP
rs1352102368 2388 dbSNP
rs1449485721 2388 dbSNP
rs1229457040 2390 dbSNP
rs1373246868 2390 dbSNP
rs904857847 2390 dbSNP
rs1314898073 2395 dbSNP
rs1232846556 2398 dbSNP
rs1239835355 2404 dbSNP
rs1008218356 2410 dbSNP
rs889794016 2414 dbSNP
rs1458869728 2416 dbSNP
rs778942918 2418 dbSNP
rs930374878 2419 dbSNP
rs1049678606 2420 dbSNP
rs1483524044 2425 dbSNP
rs1388804535 2429 dbSNP
rs1183569369 2440 dbSNP
rs1414970702 2443 dbSNP
rs1474608122 2445 dbSNP
rs1170879271 2447 dbSNP
rs1425335325 2449 dbSNP
rs1463800054 2449 dbSNP
rs1168764859 2451 dbSNP
rs77533182 2451 dbSNP
rs1354354679 2452 dbSNP
rs914633819 2453 dbSNP
rs1305131198 2455 dbSNP
rs1053725345 2456 dbSNP
rs757279397 2459 dbSNP
rs1297309840 2464 dbSNP
rs1278987582 2471 dbSNP
rs940283831 2471 dbSNP
rs1362356732 2472 dbSNP
rs564294010 2474 dbSNP
rs1271985822 2482 dbSNP
rs1212092452 2487 dbSNP
rs768670568 2493 dbSNP
rs1465101073 2494 dbSNP
rs981698415 2499 dbSNP
rs1193753818 2501 dbSNP
rs948910647 2505 dbSNP
rs1264782744 2516 dbSNP
rs915596646 2518 dbSNP
rs1474212209 2519 dbSNP
rs1200385912 2522 dbSNP
rs549813839 2523 dbSNP
rs1178784433 2526 dbSNP
rs1374168512 2528 dbSNP
rs921247604 2529 dbSNP
rs1262062277 2531 dbSNP
rs1342495412 2532 dbSNP
rs1428844086 2534 dbSNP
rs979542211 2534 dbSNP
rs1367974418 2536 dbSNP
rs1220745890 2539 dbSNP
rs1193338505 2541 dbSNP
rs951914099 2544 dbSNP
rs529737211 2545 dbSNP
rs972344787 2555 dbSNP
rs965900558 2556 dbSNP
rs1287485223 2564 dbSNP
rs1444815199 2565 dbSNP
rs1191946562 2569 dbSNP
rs1018701794 2572 dbSNP
rs1195892503 2573 dbSNP
rs544509341 2580 dbSNP
rs1393700930 2581 dbSNP
rs1454202498 2583 dbSNP
rs1007435665 2585 dbSNP
rs1387178662 2586 dbSNP
rs148820723 2591 dbSNP
rs1350670895 2593 dbSNP
rs1344385550 2597 dbSNP
rs960917757 2599 dbSNP
rs1028294105 2603 dbSNP
rs780541588 2611 dbSNP
rs1034980608 2618 dbSNP
rs1240740555 2629 dbSNP
rs756572372 2630 dbSNP
rs1347853910 2633 dbSNP
rs1235548124 2635 dbSNP
rs893233714 2641 dbSNP
rs1324475147 2644 dbSNP
rs1277856631 2651 dbSNP
rs1053207000 2652 dbSNP
rs1381274574 2654 dbSNP
rs1211493399 2662 dbSNP
rs1251470927 2672 dbSNP
rs934707220 2673 dbSNP
rs907372649 2675 dbSNP
rs1027262817 2677 dbSNP
rs1468343539 2683 dbSNP
rs994558460 2686 dbSNP
rs1366069880 2690 dbSNP
rs1469104466 2690 dbSNP
rs1470985978 2690 dbSNP
rs372391042 2691 dbSNP
rs764233330 2696 dbSNP
rs560965736 2698 dbSNP
rs566575665 2699 dbSNP
rs1399983972 2703 dbSNP
rs948962499 2706 dbSNP
rs1324178675 2707 dbSNP
rs1393375141 2712 dbSNP
rs1330716332 2713 dbSNP
rs1447265785 2713 dbSNP
rs1333905855 2714 dbSNP
rs891286396 2719 dbSNP
rs781386746 2723 dbSNP
rs932877521 2726 dbSNP
rs1231032193 2727 dbSNP
rs984477532 2728 dbSNP
rs921280362 2731 dbSNP
rs1168147880 2732 dbSNP
rs561548459 2733 dbSNP
rs1477044291 2734 dbSNP
rs1265870107 2736 dbSNP
rs1194365471 2741 dbSNP
rs1476233463 2742 dbSNP
rs1162987843 2743 dbSNP
rs1417402612 2743 dbSNP
rs145424048 2744 dbSNP
rs1442306892 2746 dbSNP
rs1169402042 2748 dbSNP
rs919033885 2751 dbSNP
rs1394129340 2754 dbSNP
rs1390701660 2761 dbSNP
rs1334783986 2764 dbSNP
rs1356740859 2764 dbSNP
rs547072152 2771 dbSNP
rs1202225554 2772 dbSNP
rs966149866 2774 dbSNP
rs41304832 2775 dbSNP
rs985899562 2776 dbSNP
rs1217093453 2778 dbSNP
rs1253420385 2779 dbSNP
rs1337875200 2781 dbSNP
rs953326123 2782 dbSNP
rs752357969 2783 dbSNP
rs545553328 2785 dbSNP
rs576789325 2786 dbSNP
rs780472025 2788 dbSNP
rs1185895570 2789 dbSNP
rs1256952734 2796 dbSNP
rs1478258994 2797 dbSNP
rs1243837300 2799 dbSNP
rs1371088321 2802 dbSNP
rs565195063 2805 dbSNP
rs6011074 2808 dbSNP
rs1032050190 2809 dbSNP
rs1377180670 2810 dbSNP
rs1432856227 2810 dbSNP
rs1340646387 2816 dbSNP
rs370633746 2817 dbSNP
rs969247266 2817 dbSNP
rs1027294055 2824 dbSNP
rs201126431 2828 dbSNP
rs1227139897 2835 dbSNP
rs1399002363 2838 dbSNP
rs534895683 2839 dbSNP
rs1328855612 2841 dbSNP
rs1350645019 2842 dbSNP
rs1209420114 2843 dbSNP
rs1279643297 2844 dbSNP
rs545197581 2844 dbSNP
rs1488677009 2846 dbSNP
rs1207050095 2850 dbSNP
rs1259931386 2852 dbSNP
rs998968137 2854 dbSNP
rs1199297526 2855 dbSNP
rs907256507 2861 dbSNP
rs897576804 2862 dbSNP
rs140673508 2863 dbSNP
rs1009045818 2864 dbSNP
rs948845409 2875 dbSNP
rs3208616 2879 dbSNP
rs1419798327 2882 dbSNP
rs1181482511 2883 dbSNP
rs1360556572 2884 dbSNP
rs1454909126 2890 dbSNP
rs1286676316 2898 dbSNP
rs41304834 2898 dbSNP
rs1051237152 2902 dbSNP
rs10712259 2906 dbSNP
rs1232692965 2906 dbSNP
rs796876566 2906 dbSNP
rs1049307586 2908 dbSNP
rs900047870 2910 dbSNP
rs1367203363 2912 dbSNP
rs1190301783 2921 dbSNP
rs1485646835 2925 dbSNP
rs1210711776 2927 dbSNP
rs200493117 2938 dbSNP
rs375674640 2938 dbSNP
rs1237579414 2939 dbSNP
rs1466992113 2939 dbSNP
rs1196830925 2940 dbSNP
rs1459226323 2944 dbSNP
rs1420882742 2945 dbSNP
rs565250545 2945 dbSNP
rs1362765199 2950 dbSNP
rs1274005872 2951 dbSNP
rs1458054366 2951 dbSNP
rs1327539569 2952 dbSNP
rs1397056285 2952 dbSNP
rs1439176473 2953 dbSNP
rs1209000863 2957 dbSNP
rs765082701 2961 dbSNP
rs1374686474 2963 dbSNP
rs796969021 2963 dbSNP
rs1354048769 2965 dbSNP
rs918934414 2965 dbSNP
rs1036416200 2967 dbSNP
rs1246696963 2968 dbSNP
rs556040792 2969 dbSNP
rs1234084875 2972 dbSNP
rs913892094 2981 dbSNP
rs911629280 2983 dbSNP
rs562859515 2986 dbSNP
rs759888616 2987 dbSNP
rs1481564636 2993 dbSNP
rs1175437082 2994 dbSNP
rs191796266 2997 dbSNP
rs927812897 3002 dbSNP
rs1322520598 3004 dbSNP
rs1423894874 3009 dbSNP
rs980547830 3009 dbSNP
rs953211773 3010 dbSNP
rs1460658151 3012 dbSNP
rs920477237 3019 dbSNP
rs146835562 3020 dbSNP
rs753284696 3021 dbSNP
rs1372611230 3026 dbSNP
rs956810586 3027 dbSNP
rs75960031 3028 dbSNP
rs1232956354 3034 dbSNP
rs1445693550 3038 dbSNP
rs999247356 3039 dbSNP
rs111808289 3040 dbSNP
rs188218891 3044 dbSNP
rs1471229311 3048 dbSNP
rs1189440322 3049 dbSNP
rs1254828276 3057 dbSNP
rs1474662658 3058 dbSNP
rs1013122885 3060 dbSNP
rs894652165 3061 dbSNP
rs1412001673 3064 dbSNP
rs570834232 3071 dbSNP
rs376290838 3074 dbSNP
rs1049658066 3075 dbSNP
rs899995652 3077 dbSNP
rs995120830 3080 dbSNP
rs898045231 3081 dbSNP
rs1373736332 3082 dbSNP
rs1414357099 3084 dbSNP
rs530760462 3085 dbSNP
rs944358306 3087 dbSNP
rs1363741007 3090 dbSNP
rs760510066 3098 dbSNP
rs1052833310 3106 dbSNP
rs773245036 3107 dbSNP
rs1283856275 3108 dbSNP
rs928012397 3110 dbSNP
rs931699287 3116 dbSNP
rs543143084 3119 dbSNP
rs761622586 3125 dbSNP
rs561633760 3126 dbSNP
rs956677975 3135 dbSNP
rs574031627 3138 dbSNP
rs1390005102 3139 dbSNP
rs1455050368 3140 dbSNP
rs920426551 3141 dbSNP
rs1373641882 3143 dbSNP
rs541651635 3147 dbSNP
rs528293610 3158 dbSNP
rs774494197 3171 dbSNP
rs977486015 3173 dbSNP
rs971376845 3174 dbSNP
rs1288046562 3179 dbSNP
rs768866943 3181 dbSNP
rs1013007056 3182 dbSNP
rs1301162458 3188 dbSNP
rs1346441197 3195 dbSNP
rs1305295103 3197 dbSNP
rs907553734 3198 dbSNP
rs1444904283 3200 dbSNP
rs1437477499 3212 dbSNP
rs1425709015 3214 dbSNP
rs1360427008 3215 dbSNP
rs559088678 3225 dbSNP
rs958757200 3226 dbSNP
rs987505429 3228 dbSNP
rs1478027181 3229 dbSNP
rs1027838320 3235 dbSNP
rs1408886453 3244 dbSNP
rs376224530 3245 dbSNP
rs995403096 3249 dbSNP
rs1410318487 3251 dbSNP
rs1399127004 3256 dbSNP
rs954453909 3258 dbSNP
rs898101461 3261 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545213. RNA binding protein: AGO2. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1
miRNA  3' ucggucgguugaguguCACGUCu 5'
                          |||||| 
Target 5' ----------------GUGCAGa 3'
1 - 7
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545213
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / Control
Location of target site ENST00000245663.4 | 3UTR | GUGCAGAGUUUUACAGAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
296 hsa-miR-4793-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT092332 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 6
MIRT131237 ATG2A autophagy related 2A 2 2
MIRT145926 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT206559 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT226455 TP53INP1 tumor protein p53 inducible nuclear protein 1 2 2
MIRT337662 ZNF695 zinc finger protein 695 2 2
MIRT405828 SIX4 SIX homeobox 4 2 2
MIRT455113 RILPL1 Rab interacting lysosomal protein like 1 2 2
MIRT456756 TMEM239 transmembrane protein 239 2 4
MIRT457974 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT458173 LYRM4 LYR motif containing 4 2 4
MIRT458245 SLC9A7 solute carrier family 9 member A7 2 2
MIRT466145 TMEM120B transmembrane protein 120B 2 2
MIRT474981 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT475601 HMGB2 high mobility group box 2 2 4
MIRT480759 BMP3 bone morphogenetic protein 3 2 4
MIRT481156 AVL9 AVL9 cell migration associated 2 2
MIRT482155 AK2 adenylate kinase 2 2 2
MIRT488386 VAV3 vav guanine nucleotide exchange factor 3 2 6
MIRT496575 KIF18B kinesin family member 18B 2 2
MIRT498411 TXNDC16 thioredoxin domain containing 16 2 4
MIRT504547 ZNF417 zinc finger protein 417 2 6
MIRT505417 TCF7L2 transcription factor 7 like 2 2 2
MIRT509349 ALDH9A1 aldehyde dehydrogenase 9 family member A1 2 6
MIRT512164 CD164 CD164 molecule 2 6
MIRT517238 PRIM1 DNA primase subunit 1 2 2
MIRT518671 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT519298 MLH1 mutL homolog 1 2 2
MIRT523662 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT525452 GPATCH2L G-patch domain containing 2 like 2 2
MIRT539847 ZNF766 zinc finger protein 766 2 2
MIRT540076 SSH3 slingshot protein phosphatase 3 2 2
MIRT540320 PIGR polymeric immunoglobulin receptor 2 2
MIRT540548 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT540759 UTP6 UTP6, small subunit processome component 2 2
MIRT541545 HIATL2 major facilitator superfamily domain containing 14C 2 2
MIRT541553 SLC35E1 solute carrier family 35 member E1 2 2
MIRT541666 ATP8B3 ATPase phospholipid transporting 8B3 2 4
MIRT541722 TFDP2 transcription factor Dp-2 2 2
MIRT541800 DUSP28 dual specificity phosphatase 28 2 2
MIRT541816 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT541907 VWA7 von Willebrand factor A domain containing 7 2 2
MIRT542154 UGDH UDP-glucose 6-dehydrogenase 2 2
MIRT542207 C14orf142 GON7, KEOPS complex subunit homolog 2 2
MIRT542233 FUT9 fucosyltransferase 9 2 2
MIRT542320 SERPING1 serpin family G member 1 2 2
MIRT542369 PAICS phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 2
MIRT542476 APOC3 apolipoprotein C3 2 2
MIRT542641 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT542660 TAF11 TATA-box binding protein associated factor 11 2 2
MIRT542749 PRRG4 proline rich and Gla domain 4 2 4
MIRT542789 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT545442 FGFRL1 fibroblast growth factor receptor like 1 2 2
MIRT546206 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT552270 RAB3D RAB3D, member RAS oncogene family 2 2
MIRT552655 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT554134 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 2 2
MIRT556795 KIAA1958 KIAA1958 2 2
MIRT564762 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT569428 STX7 syntaxin 7 2 2
MIRT573245 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT607390 LANCL3 LanC like 3 2 2
MIRT607430 NOTCH2NL notch 2 N-terminal like 2 2
MIRT607452 ZNF543 zinc finger protein 543 2 2
MIRT607580 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT607748 ANGPT4 angiopoietin 4 2 2
MIRT607907 SPRYD4 SPRY domain containing 4 2 2
MIRT608703 GMPR guanosine monophosphate reductase 2 2
MIRT612127 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 2 2
MIRT612786 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 4
MIRT616692 LPL lipoprotein lipase 2 2
MIRT617045 ZNF610 zinc finger protein 610 2 2
MIRT617091 ZNF43 zinc finger protein 43 2 2
MIRT617314 MBOAT1 membrane bound O-acyltransferase domain containing 1 2 2
MIRT617355 MELK maternal embryonic leucine zipper kinase 2 2
MIRT617486 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT617579 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT617669 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT617722 TRAPPC2 trafficking protein particle complex 2 2 4
MIRT617893 PTCHD3 patched domain containing 3 2 2
MIRT617982 ZNF234 zinc finger protein 234 2 4
MIRT618434 MYLK3 myosin light chain kinase 3 2 4
MIRT618732 HIST1H2AH histone cluster 1 H2A family member h 2 2
MIRT619045 CASS4 Cas scaffolding protein family member 4 2 2
MIRT619573 ATAT1 alpha tubulin acetyltransferase 1 2 4
MIRT619671 CYP1A2 cytochrome P450 family 1 subfamily A member 2 2 2
MIRT619887 ABHD17B abhydrolase domain containing 17B 2 2
MIRT620519 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT620535 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT620996 C19orf52 translocase of inner mitochondrial membrane 29 2 2
MIRT621304 YIPF4 Yip1 domain family member 4 2 2
MIRT622086 SRPX2 sushi repeat containing protein, X-linked 2 2 2
MIRT622168 SMYD1 SET and MYND domain containing 1 2 2
MIRT622543 PXMP4 peroxisomal membrane protein 4 2 2
MIRT622761 PGM3 phosphoglucomutase 3 2 2
MIRT622885 PDCL3 phosducin like 3 2 4
MIRT623130 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 2 2
MIRT624840 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT625047 MBD3 methyl-CpG binding domain protein 3 2 2
MIRT625059 ZNF556 zinc finger protein 556 2 2
MIRT625508 PPAPDC1A phospholipid phosphatase 4 2 2
MIRT625573 ANKRD42 ankyrin repeat domain 42 2 2
MIRT626133 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 2 2
MIRT626327 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626765 CDC14B cell division cycle 14B 2 2
MIRT626798 CSE1L chromosome segregation 1 like 2 2
MIRT627212 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT627225 ZBTB8B zinc finger and BTB domain containing 8B 2 4
MIRT627256 XKR4 XK related 4 2 2
MIRT628190 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT628466 AHSA2 activator of HSP90 ATPase homolog 2 2 2
MIRT628627 CCT4 chaperonin containing TCP1 subunit 4 2 2
MIRT629040 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT630847 ACACB acetyl-CoA carboxylase beta 2 2
MIRT631721 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT632264 USP1 ubiquitin specific peptidase 1 2 4
MIRT632571 POLQ DNA polymerase theta 2 2
MIRT633992 SLC35E2 solute carrier family 35 member E2 2 2
MIRT635211 ZNF286A zinc finger protein 286A 2 4
MIRT635249 ELOVL6 ELOVL fatty acid elongase 6 2 4
MIRT635261 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT635283 GK5 glycerol kinase 5 (putative) 2 2
MIRT635663 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT636251 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT636564 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT636814 TBC1D24 TBC1 domain family member 24 2 2
MIRT637358 ZNF460 zinc finger protein 460 2 2
MIRT637473 DEFB105B defensin beta 105B 2 4
MIRT637505 DEFB105A defensin beta 105A 2 4
MIRT637861 SC5D sterol-C5-desaturase 2 2
MIRT638080 ZNF652 zinc finger protein 652 2 2
MIRT638096 ZBTB8A zinc finger and BTB domain containing 8A 2 2
MIRT638174 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT638201 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT638278 SH2B3 SH2B adaptor protein 3 2 2
MIRT638714 FUT11 fucosyltransferase 11 2 2
MIRT638852 CLMP CXADR like membrane protein 2 2
MIRT639815 TMED8 transmembrane p24 trafficking protein family member 8 2 2
MIRT640879 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT640937 FAM129A family with sequence similarity 129 member A 2 2
MIRT640971 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT641642 GNAZ G protein subunit alpha z 2 2
MIRT641931 SLC25A16 solute carrier family 25 member 16 2 2
MIRT642136 CRY2 cryptochrome circadian clock 2 2 2
MIRT643199 JAK3 Janus kinase 3 2 2
MIRT643256 ZNF566 zinc finger protein 566 2 2
MIRT643378 TRIM16L tripartite motif containing 16 like 2 2
MIRT643683 AMER3 APC membrane recruitment protein 3 2 2
MIRT643728 MCMDC2 minichromosome maintenance domain containing 2 2 2
MIRT643949 CCDC141 coiled-coil domain containing 141 2 2
MIRT644915 SERF1B small EDRK-rich factor 1B 2 2
MIRT645163 NOL9 nucleolar protein 9 2 2
MIRT645547 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B 2 2
MIRT645550 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT645572 TACR2 tachykinin receptor 2 2 2
MIRT646697 SERF1A small EDRK-rich factor 1A 2 2
MIRT647806 FRMD8 FERM domain containing 8 2 2
MIRT647903 CIRH1A UTP4, small subunit processome component 2 2
MIRT648978 ACAD8 acyl-CoA dehydrogenase family member 8 2 2
MIRT649907 SLFN12L schlafen family member 12 like 2 2
MIRT650224 SIGLEC9 sialic acid binding Ig like lectin 9 2 4
MIRT651880 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT651935 UBN1 ubinuclein 1 2 2
MIRT652839 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT652994 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT654800 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655591 OTUD7B OTU deubiquitinase 7B 2 2
MIRT658760 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 2 2
MIRT659358 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT660717 AMER1 APC membrane recruitment protein 1 2 2
MIRT660737 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT661088 TMEM145 transmembrane protein 145 2 2
MIRT661176 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT662005 ZNF445 zinc finger protein 445 2 2
MIRT662178 KIAA1210 KIAA1210 2 2
MIRT662270 OR51E2 olfactory receptor family 51 subfamily E member 2 2 2
MIRT663046 SLC16A4 solute carrier family 16 member 4 2 2
MIRT663476 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT664039 RPL27A ribosomal protein L27a 2 2
MIRT664096 ZDHHC24 zinc finger DHHC-type containing 24 2 2
MIRT664109 FUT1 fucosyltransferase 1 (H blood group) 2 2
MIRT664317 CD209 CD209 molecule 2 2
MIRT664455 BBS5 Bardet-Biedl syndrome 5 2 2
MIRT664595 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 4
MIRT664694 DBF4 DBF4 zinc finger 2 2
MIRT665162 SF3A1 splicing factor 3a subunit 1 2 2
MIRT665214 RBM22 RNA binding motif protein 22 2 2
MIRT665254 ZNF286B zinc finger protein 286B 2 2
MIRT665268 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT665606 TTC39A tetratricopeptide repeat domain 39A 2 2
MIRT665830 TIMELESS timeless circadian clock 2 2
MIRT666201 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 2 2
MIRT666546 RNF115 ring finger protein 115 2 2
MIRT666602 REEP3 receptor accessory protein 3 2 2
MIRT666862 POU2F3 POU class 2 homeobox 3 2 4
MIRT666886 POLA2 DNA polymerase alpha 2, accessory subunit 2 2
MIRT667158 NRXN3 neurexin 3 2 2
MIRT667252 NEK9 NIMA related kinase 9 2 2
MIRT667419 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT667434 METTL8 methyltransferase like 8 2 2
MIRT668023 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT668062 GPR75 G protein-coupled receptor 75 2 2
MIRT668070 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT668607 EHD4 EH domain containing 4 2 4
MIRT668694 DNAL1 dynein axonemal light chain 1 2 2
MIRT668782 DAAM1 dishevelled associated activator of morphogenesis 1 2 2
MIRT669037 CHEK1 checkpoint kinase 1 2 2
MIRT669044 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT669156 CCNG1 cyclin G1 2 2
MIRT670090 ABCF3 ATP binding cassette subfamily F member 3 2 4
MIRT670206 SLC24A4 solute carrier family 24 member 4 2 2
MIRT672488 FUS FUS RNA binding protein 2 2
MIRT673830 SLC11A2 solute carrier family 11 member 2 2 2
MIRT675481 VEGFC vascular endothelial growth factor C 2 2
MIRT675634 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT677913 HIST1H2BN histone cluster 1 H2B family member n 2 2
MIRT678420 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678626 OLFML2A olfactomedin like 2A 2 2
MIRT678791 NUPL2 nucleoporin like 2 2 2
MIRT679561 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT680743 CA5B carbonic anhydrase 5B 2 2
MIRT682481 LIX1L limb and CNS expressed 1 like 2 4
MIRT682701 PSMD9 proteasome 26S subunit, non-ATPase 9 2 2
MIRT682759 MDM2 MDM2 proto-oncogene 2 2
MIRT682811 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT682847 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT682896 XIAP X-linked inhibitor of apoptosis 2 2
MIRT682916 FAM73A mitoguardin 1 2 2
MIRT682935 ZNF292 zinc finger protein 292 2 2
MIRT682953 RPL12 ribosomal protein L12 2 2
MIRT682972 NF2 neurofibromin 2 2 2
MIRT683033 SUSD5 sushi domain containing 5 2 2
MIRT683081 A1BG alpha-1-B glycoprotein 2 2
MIRT683105 TIMM10B translocase of inner mitochondrial membrane 10B 2 2
MIRT686640 TMEM184C transmembrane protein 184C 2 2
MIRT687444 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT688401 EMC8 ER membrane protein complex subunit 8 2 2
MIRT688886 C3orf70 chromosome 3 open reading frame 70 2 2
MIRT689148 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 2 2
MIRT689234 RPS19 ribosomal protein S19 2 2
MIRT689306 C5AR2 complement component 5a receptor 2 2 2
MIRT689364 ZNF101 zinc finger protein 101 2 2
MIRT689498 SCARF1 scavenger receptor class F member 1 2 2
MIRT689655 RBM23 RNA binding motif protein 23 2 2
MIRT689897 SOD2 superoxide dismutase 2 2 2
MIRT690150 PPIL6 peptidylprolyl isomerase like 6 2 2
MIRT690601 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT690805 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT690946 GLG1 golgi glycoprotein 1 2 2
MIRT691388 ATP13A4 ATPase 13A4 2 2
MIRT691408 DNA2 DNA replication helicase/nuclease 2 2 2
MIRT692175 LRRC3C leucine rich repeat containing 3C 2 2
MIRT692235 ALDH1B1 aldehyde dehydrogenase 1 family member B1 2 2
MIRT693283 GINM1 glycoprotein integral membrane 1 2 2
MIRT693439 TPGS1 tubulin polyglutamylase complex subunit 1 2 2
MIRT693460 HIST1H2AG histone cluster 1 H2A family member g 2 2
MIRT693768 ZNF383 zinc finger protein 383 2 2
MIRT694018 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT694236 ZNF749 zinc finger protein 749 2 2
MIRT694321 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT694347 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT694430 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 2
MIRT695763 WDR35 WD repeat domain 35 2 2
MIRT696167 TIPIN TIMELESS interacting protein 2 2
MIRT696417 DOCK7 dedicator of cytokinesis 7 2 2
MIRT696543 C3 complement C3 2 2
MIRT696998 CCDC80 coiled-coil domain containing 80 2 2
MIRT697232 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697806 UBXN2A UBX domain protein 2A 2 2
MIRT697944 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT698161 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT698778 STK4 serine/threonine kinase 4 2 2
MIRT700259 RBM12B RNA binding motif protein 12B 2 2
MIRT700970 PDK3 pyruvate dehydrogenase kinase 3 2 2
MIRT701251 NUP35 nucleoporin 35 2 2
MIRT701607 MYPN myopalladin 2 2
MIRT702457 KIAA1467 family with sequence similarity 234 member B 2 2
MIRT702613 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 2
MIRT702691 IRGQ immunity related GTPase Q 2 2
MIRT702934 HMX3 H6 family homeobox 3 2 2
MIRT702991 HERPUD2 HERPUD family member 2 2 2
MIRT703148 GPR137C G protein-coupled receptor 137C 2 2
MIRT703980 EMC1 ER membrane protein complex subunit 1 2 2
MIRT704569 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit 2 2
MIRT705065 C4orf32 family with sequence similarity 241 member A 2 2
MIRT705447 ATL2 atlastin GTPase 2 2 2
MIRT705856 AFF3 AF4/FMR2 family member 3 2 2
MIRT705886 ADIPOR2 adiponectin receptor 2 2 2
MIRT714370 HP1BP3 heterochromatin protein 1 binding protein 3 2 2
MIRT715784 PHF12 PHD finger protein 12 2 2
MIRT715864 KIAA0101 PCNA clamp associated factor 2 2
MIRT715947 NUP93 nucleoporin 93 2 2
MIRT716132 THOC5 THO complex 5 2 2
MIRT717084 EBF4 early B-cell factor 4 2 2
MIRT725424 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT736091 GREM1 gremlin 1, DAN family BMP antagonist 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4793 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-miR-4793-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-4793-3p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-4793-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)

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