pre-miRNA Information
pre-miRNA hsa-mir-4491   
Genomic Coordinates chr11: 111347757 - 111347824
Description Homo sapiens miR-4491 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4491
Sequence 46| AAUGUGGACUGGUGUGACCAAA |67
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1043555759 4 dbSNP
rs1182248607 6 dbSNP
rs527936256 7 dbSNP
rs755554417 14 dbSNP
rs779628583 16 dbSNP
rs1471408223 19 dbSNP
rs909066815 20 dbSNP
Putative Targets

Gene Information
Gene Symbol FIGNL1   
Synonyms -
Description fidgetin like 1
Transcript NM_001042762   
Other Transcripts NM_022116   
Expression
Putative miRNA Targets on FIGNL1
3'UTR of FIGNL1
(miRNA target sites are highlighted)
>FIGNL1|NM_001042762|3'UTR
   1 GTGGGATACTTGGAATCAAGGCATCTCTGTAGTACAGTCTTCTTTATTTTTTAGCATAGAAAGTTGGGGATGTGTTAATT
  81 GTATTTTTAAGAATATATTCTAAGTTCTGTACTTCAAATAATAGCACAGATTTTACATCTGATTGACATAGTGTATGTTA
 161 ATGTAAGTTTTGCTTTCCAGTGATTACCTGATACGTAAGCCTATTTGAACAAAGTGAGAATGAACTTTTGTTTCTAAGAA
 241 GTCTTTATCTTGAAGCTATATAACATGAAAAGTGAGCTCAAATTTTTTTTAGTTGAAGATTACATATAAAGTTGTGTCTG
 321 ATTAATATTCATCTTTTATTGAAGAAAGTGCCTTCTGATGGCCACATAATTCTTAATGTCAGCTAGTATAATGGTTTACA
 401 TTTGGACAAAGTATTGCTTAGTGTTATTTAAGTAGATTTAAGATCTCAAAGCTAAAGTGCCAATTTTTACTTTCTTCAGC
 481 CAATTTGTTACCTCTTTTATGGTTTTTAATTTTTATCAGGACTAACATTTTCAGAAATAGCAAGGTGTGATCTAGTATTA
 561 GATTCACAGAACTGAAAGGTTAATTAAGAATGTTGGTTATTTTCACGGGAGCGTGTGATATTTAACATTAATATTTTATT
 641 TGACACTACAGCCTGTAATACTGCTCTCTTTCAAAAACAAGTTTTCAGATTTTTATAACAGACCCATTTTGTTTTATGAA
 721 ACATGTTCATTACAGAAACATGAGAAAATAGAGATAAGTAAAAAGAATAAAAGTCACTATTATCCTACCACTTTGCGGGA
 801 CACACTATTAATATTTAAGCATAGATTCTTCCAGATGTTTTGTTTTATACAGCAGTAGGATTGTGTAATGTATTCTCTCT
 881 TGTAGCCTATTCTTCAAAGCGTATCTTCACTTTCCATGTTAACATAAATGTCCTTTTATGATTGTCTAGGATTCCATGGA
 961 TGGATGGAATATAATTGAGTCATCTGGTAGAGCGCATATAGGACAGGACGCTAGGTTGTTTATCTTTTGTTTATTGTAAA
1041 GGAACTATGTGGGATGCATTTGGTGATCTTTTTAAAAAATGTATAAATTTCTTGAGTAATTCCTGGATTAAAGAATATGC
1121 ACTTTTTAAAGCTTTTGGCTTGCATTCTAAATTGTCCTCTTGAAAAAGTAGTTCCTGTGTAAAACTCCATCTGCACTGAA
1201 TCAGAGCTATGGCAGCATTGGGCAGTAGGCAGTTTTGGTATTTGTTGGCATTCTTTTTGCATTTATTCAAAAAACTGAAG
1281 GTAGTGAACGTAGAGCAATGAACAACACAAATATCCTTGGTCTCGTGGAGGTTATATTTAAGTTCTAATGTTTTCTCTTG
1361 TGAACAGTGCAATTTGAAATGACAAATTGAAACACTTTTAGTTGTTGAATTTAGACAGTTTGTGTATATAGTTTAAATTT
1441 TTATTCTTGGTTTGCCTTCTGTTTTTATGTTAAAAGATTGTTGCAATTTTTAGTTTTTCCCTTTGTAATATGTGATTGTC
1521 TTTCATTAGAATTCATTTTTTGTTTTGTTTTGGTTATTTTGAAACAGTCTCGCTGTGTTGCCTAGGCTGGAGTGCAGTGG
1601 TGTGATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCCAGTGATTCTTGTGCCTCAGTCTCCCTTGTAGCTGAGACCA
1681 CAGGTTTGCACCACCACACCCAGCTAATTTTTGTATTTTTAATCGAGATGGGGTTTCACCATGTTGCCCAGGCTGCTCTC
1761 GAACTCCTGGCCTCAAACGATCCACCCACCTCAGCCTCCTGAAGTGTTGGGATTACAGGCATGAGCCACCACGCCTGGCC
1841 TTTTTTATTAGAATTTGGACGTTAAACTTCTTGTCTTCAGTTCTTAGTTATATCTTTTAACATCCTAAAACATTCCACAA
1921 TATTCATTACTGTCTTTATCCCTTTCTATTTCTATATAAACAGCACTATAAACTTGGTTTCTTTGGTATTGATGTCAAGG
2001 AATTCTCTAGTTTTTCTTTCTTGGTGTTTAATTGCAGATCACTCCCACCTTCTTGGGTCTAGCTATTTAGATTTATCAGC
2081 ATTTGCCCTCTAGCTGTTAATGTTTTATTTAGCTCTGAAATTTGGTCTTAATATTTATTATCAGTTTTTTTCAGTTACAG
2161 CTTCTGCCAGCCCTGACTTTAAGCTCCCTTGATCACCAGCCACAGGGCCACTTCTTTCTATGGAGTTTAGAAATTGTGAC
2241 AAGGAGAGAAAGTCTAGTTGGTTTAGCTCATCTTGGATTAAGCAGAGCCCATGTCTCTCTTGTTAGCTCAAGAAATGGTC
2321 TTTCCTGAATTAAGGTCTACTCTGTTAAATAAGAATCTAAACCTGAAAGGAATAGTCAGGATATTTTAAAGCTGGAAAGA
2401 AAATTTGAGCTGGGGAGTCAACTGTTGTTTCTACGTTATACCACAGAGAAGCTTTCTTTGTCTCAACACTTTGTGATTTT
2481 GAGTGTTTCTGAAGCAGTTGGATAGGAAGCTTACTGAAACTTTAAGATTGCTTACTCTCGCCACATGCGATTGTCTTCAT
2561 CGAATATAATAATCTTGGATTAAATTATCTCAAGTGTGGCACTGCCCTGTCTTTAGCTATTGTTTCAGAAACATGAATGC
2641 TAGCCTGATATTTAATGTCTTCAAAAATTACATTCCCTTAGTAGAAATACACATTTTACTAAACATGTCACTTGGTTATG
2721 GTATTAATGCTTAACAATTTTGATATGAATATGGTAATTCTAATTTATGATTTCAGGCCTTCTTAAATCTTTATTATACA
2801 TCTAATAATAATATATGATCCTTTTGATATGTATTCATTCTGTGGTAAATTTCTAATTTTCTGAAATTTTAACTCATTTT
2881 CTCAATTCTAAAATATCTCTCAGGTGTGCCTTTCATATTGACAAGCTGGTCTTAATGGAATCATAGTCTAAAGATCATGG
2961 GCTGTGGAGCCAAATAGACCTGTTGAATTCTGGCTCTGTCATTTACTGGTGACTGTTGGTTACTTAATTATTCAATCTCA
3041 ATTCTAAAGTGAGAATAGTTTATACCTGTCTTGTTGGAGAGTGAGGATTAAATAGTAAAATACAGATTTAAAAGGCCTGG
3121 TTCATGTTTTATGATTGTGCCTCTTCTTTGAATCTGCCTTGATTTTGCTCTTGTTGCTGTGAAGGATCTTTTCAGCTATT
3201 TTGTGTGGTTGTCCTAGCTCATTCTGCTTAGTGTTTGTGGTATTTGCATCATATTATTAGAGATCATATGCCATCTATCT
3281 TTAGTTTTGTGGAAAAATTCTAATTCCAAAGAAATATCTCTTAGTTATGTTTCTCCTTTTCTACACTTTAGAACTTTTTT
3361 AAAGGTCTGTCCCAGATTATTATTTTTCTCTACTCATGCTTATATGTTATTTATTGGTCTCCATTTTTACTCTCCCAGTG
3441 TTTTTTTAAGGGACACTTTACAGCCCACCTTTAGGGATCTGATTAAAAGAAAGGATTCTATCAAGGTCCATGGCAAAAGG
3521 ACAGGTTGGATAAAGATAACATCTTTTTACTTCCTTCTTATATTCCTAGTTCTTGACCTTAGTTGGGGAGCTGGTGGTGA
3601 GGGAGCACATTTTAAACAGTTTAAGCAGGTGAGGCCATCTTGAAGGTTTGCCCCAGCAGCCTGGGTGAATGGAGGGAGTC
3681 TTGGGAGAATAGATAAGATGCAGTCACCACTTTTAACTCTTGCCCTTAAAAAATACTTTTACAACACGGCTTATAATGGA
3761 AAGAGCATTAAAATGGACATTAGAAAACTGCCAGTGATTCTAACCTTAGAGAGTTTGTACAGACTCCGTAAGATTTGTTT
3841 TTTTAGTGATAAAGGGAAATTGTACTGGTCATTCCTTAATAACACATCCAGATTTCTGTTATCACTTACCAAAAATTTAT
3921 GAATTTGAGAATTGCTTACACAGTATCAGGTGCTGGGTACTGGGAGGTACAAAACAAAGTATAGTCAGGTAAGGGCTAAC
4001 TTTATTACTAATTTGGCTCATTATAAAAACAACGGGAAAACATGAAGAGAGGGCTTTATTAAGGAGTTAAGTCAGCATAA
4081 TGGACCACTTAATATATAATAACCACTTAAGAGAAAAAGAAAAATTAGGAAGTCCACATAAGGTGGCGTTTTATAAAGGC
4161 AACATGCTGTTGTTAAGGGCACTTGGGCCATTGGTGTTTTGTGACAGCTGGGCTCAGGCATCTCAACAAGCAGCGGTGTG
4241 CCTGCTGACCAACAGGGCCTGCCACGGCCAGTGAAACACAGCTATTAGAGCTCTCTCAATCCATTTCTGCTCAGAAATGT
4321 AGAGATGGCAGGGGAAACGTAGCTAAGTCCCAGGTTCCTCGGATATGGCGAGGGCAAGCACTCCCATATTATAACAACCT
4401 GTGCAGTCAGTGAGTCCAGAGCAGAGGCCTTGTCTCCTCCTTTGCTCACCTTCACTCACTGCCCTGGACTGTCAGGCCCC
4481 AGTTCTCATCCCCATGTGTGATGAAGCCATGCAGTCCCAGAGAGGGAGCCATCAGCGCTTGGTAGTCTCATGCTTTAGTG
4561 TCAGAGTTGCACCTTACCTTTGTATCCAAGAAATGCATGCAGCTCAACTTTCCCTTAAAAGGCTTCTAGGAAAAAACTAC
4641 CCCAGCATTTTTTTTCCCCCAGAAGAATATATTAGCTTAATAATAAAAGGTATAGTAACAAACTTTCCATTTAAAATAGT
4721 GGCCTAAGCCACAAATTTACCTTTCCTGCCCGTATGTGCAAAATTTTCATTGAAATGAAAAAATACACACTAAGAATCAA
4801 TCCAGTGTGATGTTGGAAAAGAGAGAAGGTTACCATTTTCAAATATGACAGGTGTTTCTGGAGGTCACAAGGCAAATGGT
4881 ACTGGGTTGTTGGAATCCCTGAGCTAAATAATGGCTGTGAAAATGCCAGATGAGATTGGTTATCTCAGCAGTGCCTGGGC
4961 TGTACCCCTAGCTTAGGCAGCAAAATAGGCTGTGGGCCAGTGGTCTGGTATCTGAAAGGATTGCCAAGACAAGCCTTGCG
5041 GAGCTCATGCCCAACTGTTCTTGTGGAACCACTGGGAAGTGGAGTTCCCTAAATCAGGGGGAGTCATTTACAGTCGCCTG
5121 GCTTTTGTGGGCCCTGCAGCCTGAGAAGTGAGTCAGGATGGCAGGTACTTGGTTGCCACGTTAGACAGAAGCACAAGTAT
5201 TTGATGAAGCAGTGGAACTTCTTGATGTAACTCACTCCTGTCTCGGTAACTTTTTACCTACTTCCACATTTTTTTAAGGG
5281 TCGACCCCCACTTCCTACAGTTTCTCTATATCCTTGCCACTGACACATGCAGGCTTACGCCAAGACATAGAGGAGGTCTT
5361 GCTCACGCCACAGTTAACACATCTCTATCCATGGCTGGGCAATATGAAAGACAATTGCTAAGGAAGCTTTCTCCTGTCAG
5441 CATACTGATCACTTTTAAAGTATAACTTAACATTACTTCCCCTTGTAAAAATCCTCCAATAGATTCCCATCTAAATGAAA
5521 ATAAAATCCAAATTCCTTCCTAGAGCCAAATATCATTTCTCTTCACTCTCCTTTCTTACTTTCCTTCATCCCACTGGATC
5601 TTAAGGTGCAACAAACATGTTTCTCATATAGGAAGTGTGGTAGGCAGAATTCTGAAGATGTTCCTCCAAGAGACCCATCC
5681 CCTGCTTATTCAGTCAAATCTAGGTACTGCTGGGAAGGGACTTTGCAGAGGTAATGCGGTTACAGACCTGCAGATAGGGA
5761 GGTTATCTTGAATTATTTGTGTAGGGCCAATCTAATTTCACAAGTCCTTAAAAGCAGAGAATGTTCTCTGGCTGGTTAGA
5841 GAAGAGGAGGGCTAAAGAGGCAGAAGAAAGATGTGGCAGAGAGGATGTCCAAGATTCCGAGCATGAGAAGGATTTTCTCT
5921 GAAGTTGCAGCTCTGTGAATCAGGAGCCCATGCACGAAGGCTGGAGAGAAGTCTCTAGGAGCTGACAGGAGCCTCCAGAC
6001 AATAGCCAACAAAAACCAGAGGTGTCAGTCCTAGAACTGCATAGAAGGGAATTCTGCCAGCAACCTAAATAAGCCAGGAA
6081 GCCTCACCCAGAGGTTCCAGATGAGAATCCAGGCCGGCTGACACCTTGATTTCAGTCTTATGGGACCCAGAGCAGAGAAA
6161 CTGGTAGAGACTCCTATACTTCTGATGTACAGAACTGTGGGGTCATAACTGTGTGTGGTTCTAAGCTGCTAAGTTTATGG
6241 TAGTTTGTTACAGCAGCAATGTGGGGTAGGGAACATTACACTGTTCTTTGAGTGTGGAAAGCTCTTCCTTACAGCTGCTG
6321 CTTCAAGTTAGTAAAATATAATTTCTCCAGCAAGACCTCCTTTGACCACTGGGGAGATAGCCTCCACTAACTTCCAACAC
6401 GTGCATGCCATCACTATCATATTATCCTACATTTTTTATTGGTAACTGTTACTAACTGAAAATACTTATGCTTACTGTCT
6481 TTGTCTCTAATCCTATTTCACACCCATTAGAAAGTTCTTTACAGCTAGGGACTTTATGTGCACTTCACAACCATGCAAGA
6561 TTCATGAGACTTCTGAAAAACCCAACATCATGAGAGGCACCCAGAGAAGAAGCAGAGTGATTCCCATCAAAGAAAACCAT
6641 TGATTCAGGAGACTGAGTAGAGCTTTAGAAAGTCTCGATCCCAGAAGACATGGTAGCCACCAAATTAAAATAGGCAGCTA
6721 TTGTATTAGTATATTGTTACATAACAATATCACCACAAACTTAGTGACTTTAAACAACACACATTAATGACCTTGTAGTT
6801 TCTTTCAGGCTTAGCTGGGTCCTCTGCTTCAGGGACCCACAGGGCTGCAATGAAGGTGTTGGTCAGGACTGTGGTCTCAT
6881 CTGAGGCTTGTTGGGGAAGGATCCACTTCTCAGCTCACATGGTGGTTGGGCAACATTCAGTTTCTTACAGATGGCTGGAC
6961 AGAGGGCCTCAGTTCTTGCCATCTGTTGGCTGGAGGTTGCCCTCAGTTCCTTGCCATGTAGGCATTCCAGTGTGGCTGCT
7041 TGCTTCCTCAAAGCCGGCAGGGGAGAGAGCCTTTCCAGTAGCACAGATGTTACTATCTTCTGTAATGTAATCACACAGGC
7121 AACACTTTGTCATCTTTGCTGTATTCTGTAGGGTGAGAGCAAGACACAGGTCCTTCCCACTCTTAGGGAAGGGTATTAAA
7201 AATGACAACTACCAGGAGGTAGGGATCATGGAGCCTGCTTCAGAATCTATCACAGCTGTGAAATAAAGGCCCAGGAAACA
7281 AGAATTCTAATGGTTAAAATAAAAATCTTAGTGGAAGAACTGAATTTTTAAAATGGAAAGGGCTGAAACAAGATAGTTAA
7361 AAGGAAGAATAAGCTGTGGAATTATTTTACAATCTTCAGCAGACAGAGCTAGAGTGAGGAGTTAAGTAGTATGACAGATT
7441 CCAGGTAACTAATATCCATATAATGGGGAATCTATAGAAAGTAAAAAGGAGAGAGGTAGATGATAATTGCATTATTGAGA
7521 GCAGATAATTCTTCTGAGTGAAATACATAGTTCATATCAAAAGCATCTACTGAGTGTGTGGTGTTATATATATATGTAGG
7601 TTTTTCATCCAGGGTTCTTTGGCTCATAACTCCCACAGCCCTTACACAGTCTTGTTATAATGTTGGATGTGTTAGGCCTC
7681 AGGTAGGCCTCTGGTGTTCTGCCCTCCTTCCACTCTAATATTCTCCCACCTTTCTGATTGTGGGTCTTAAGACTCAAAAT
7761 TCCAAGAGGACAGGGTTCAGAGAGCTTCCCAATAGCTGAACATGTGGAGGTTCCGGGAGAGTGGTGTGCCCAGGTAGGGC
7841 ATGGAAGCTTCAAGCCTCTTCCCCCATACCTTGCCCTAGCGTTTCTTCGTCTGTATTTTTTCCAGTATAGAGCAATAAAC
7921 TGGTGAACTAAGTGTTTCCCTGAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aaaccaguguggUCAGGUGUAa 5'
                      ||||||||| 
Target 5' gaaaaattaggaAGTCCACATa 3'
4119 - 4140 150.00 -12.60
2
miRNA  3' aaaccAGUGUGGU-CAGGUGUAa 5'
               |:|| |:|  ||||||| 
Target 5' actttTTAC-CTACTTCCACATt 3'
5249 - 5270 148.00 -12.00
3
miRNA  3' aaaCCAGUG-UGGUCAGGUGUAa 5'
             ||| || | :| ||||:|| 
Target 5' ccaGGTAACTAATA-TCCATATa 3'
7441 - 7462 138.00 -11.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN28645858 32 COSMIC
COSN30493691 46 COSMIC
COSN28858307 67 COSMIC
COSN30762175 83 COSMIC
COSN26323249 418 COSMIC
COSN26386004 454 COSMIC
COSN28411361 597 COSMIC
COSN23707853 745 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1015596501 1 dbSNP
rs376009063 4 dbSNP
rs570929937 5 dbSNP
rs771368432 15 dbSNP
rs139162971 22 dbSNP
rs1389533748 27 dbSNP
rs1158299520 30 dbSNP
rs763048540 31 dbSNP
rs10230343 32 dbSNP
rs769702701 35 dbSNP
rs1420541021 37 dbSNP
rs1423030243 40 dbSNP
rs767290020 45 dbSNP
rs748242796 50 dbSNP
rs1170429267 53 dbSNP
rs1354553889 54 dbSNP
rs1009203652 56 dbSNP
rs890194802 58 dbSNP
rs755642191 66 dbSNP
rs1354451522 67 dbSNP
rs1415069417 70 dbSNP
rs1405559540 76 dbSNP
rs1294866594 86 dbSNP
rs1053923331 91 dbSNP
rs185003173 93 dbSNP
rs1296225228 94 dbSNP
rs562033766 97 dbSNP
rs1308084243 100 dbSNP
rs10230307 104 dbSNP
rs1278405126 111 dbSNP
rs1485456499 120 dbSNP
rs1050033471 121 dbSNP
rs1260030510 124 dbSNP
rs1474637021 127 dbSNP
rs866179438 138 dbSNP
rs1420882979 141 dbSNP
rs1429574178 144 dbSNP
rs1429725035 151 dbSNP
rs922636591 151 dbSNP
rs1374360864 153 dbSNP
rs1434941502 156 dbSNP
rs1053462449 161 dbSNP
rs1343158599 162 dbSNP
rs1429777068 165 dbSNP
rs1373969901 169 dbSNP
rs976727633 182 dbSNP
rs1172173914 186 dbSNP
rs1364020797 188 dbSNP
rs529188313 194 dbSNP
rs193220404 195 dbSNP
rs540418239 203 dbSNP
rs1044941730 204 dbSNP
rs1191273316 212 dbSNP
rs1280998648 218 dbSNP
rs1490686003 219 dbSNP
rs1215544043 226 dbSNP
rs187628199 237 dbSNP
rs1243104338 238 dbSNP
rs1487118214 242 dbSNP
rs769216413 248 dbSNP
rs952602989 258 dbSNP
rs1204311339 262 dbSNP
rs1483297554 265 dbSNP
rs950250105 267 dbSNP
rs1175056255 272 dbSNP
rs151218426 274 dbSNP
rs983542251 279 dbSNP
rs1346791467 283 dbSNP
rs1438622303 285 dbSNP
rs1325151976 291 dbSNP
rs144556627 304 dbSNP
rs574913173 314 dbSNP
rs1276777949 316 dbSNP
rs1300795830 316 dbSNP
rs1348779828 328 dbSNP
rs1223469970 331 dbSNP
rs1285387774 338 dbSNP
rs970641267 348 dbSNP
rs554918085 366 dbSNP
rs1212303621 377 dbSNP
rs1224223532 379 dbSNP
rs1252928028 389 dbSNP
rs920558535 391 dbSNP
rs1200402561 407 dbSNP
rs1230730182 409 dbSNP
rs1347449010 419 dbSNP
rs535778643 426 dbSNP
rs566813317 433 dbSNP
rs1024859621 444 dbSNP
rs1158856726 445 dbSNP
rs1470746 447 dbSNP
rs1459679920 453 dbSNP
rs1164077556 460 dbSNP
rs1017549289 462 dbSNP
rs1300281619 469 dbSNP
rs182615943 477 dbSNP
rs570925423 479 dbSNP
rs551079147 480 dbSNP
rs1032119042 487 dbSNP
rs531005387 493 dbSNP
rs1231878175 496 dbSNP
rs1481154461 499 dbSNP
rs1020800643 501 dbSNP
rs117834634 507 dbSNP
rs1212197143 521 dbSNP
rs752709815 521 dbSNP
rs957785863 540 dbSNP
rs1181997609 541 dbSNP
rs1253561130 563 dbSNP
rs765361948 565 dbSNP
rs1186929169 567 dbSNP
rs1001902365 569 dbSNP
rs906097864 573 dbSNP
rs1050339814 574 dbSNP
rs932786136 578 dbSNP
rs1394351652 592 dbSNP
rs1181436707 594 dbSNP
rs1472884710 602 dbSNP
rs367723994 606 dbSNP
rs1041257061 607 dbSNP
rs1413222844 609 dbSNP
rs940056125 612 dbSNP
rs908521835 613 dbSNP
rs984264491 619 dbSNP
rs539124951 621 dbSNP
rs1268950529 623 dbSNP
rs926693956 632 dbSNP
rs1255676732 640 dbSNP
rs1276210919 646 dbSNP
rs980602994 649 dbSNP
rs1204515195 656 dbSNP
rs1209792673 658 dbSNP
rs140708868 662 dbSNP
rs1257949895 664 dbSNP
rs75859388 666 dbSNP
rs1190856008 668 dbSNP
rs1372466355 669 dbSNP
rs2305358 677 dbSNP
rs1169277422 687 dbSNP
rs920710110 694 dbSNP
rs1433091799 696 dbSNP
rs76124874 703 dbSNP
rs956383451 704 dbSNP
rs1336875877 705 dbSNP
rs943416976 707 dbSNP
rs1309737306 708 dbSNP
rs1394678792 711 dbSNP
rs1401917169 716 dbSNP
rs1326330902 729 dbSNP
rs1228839800 733 dbSNP
rs1337059724 748 dbSNP
rs1345191417 754 dbSNP
rs1470742949 756 dbSNP
rs1032420763 766 dbSNP
rs1422492003 769 dbSNP
rs564095830 772 dbSNP
rs910457369 774 dbSNP
rs987347160 775 dbSNP
rs1157772656 777 dbSNP
rs1447481317 787 dbSNP
rs543927909 791 dbSNP
rs954615635 792 dbSNP
rs1000652834 796 dbSNP
rs574977488 797 dbSNP
rs1173180721 799 dbSNP
rs1378447122 804 dbSNP
rs1467817048 814 dbSNP
rs561385863 825 dbSNP
rs1028700243 827 dbSNP
rs958007982 828 dbSNP
rs1032122177 834 dbSNP
rs1423073233 838 dbSNP
rs200394035 847 dbSNP
rs2305359 854 dbSNP
rs766622925 855 dbSNP
rs776005878 859 dbSNP
rs147232226 860 dbSNP
rs76165407 865 dbSNP
rs377524668 875 dbSNP
rs887151084 877 dbSNP
rs1351209137 880 dbSNP
rs1351434556 882 dbSNP
rs190780485 883 dbSNP
rs993653882 885 dbSNP
rs143840437 887 dbSNP
rs1340305181 889 dbSNP
rs926720246 900 dbSNP
rs1435120441 906 dbSNP
rs3173667 908 dbSNP
rs1179999608 913 dbSNP
rs1363523665 915 dbSNP
rs1458099462 924 dbSNP
rs1161952157 935 dbSNP
rs1045146225 938 dbSNP
rs748616060 946 dbSNP
rs949228041 947 dbSNP
rs917737208 949 dbSNP
rs187171531 964 dbSNP
rs577396126 965 dbSNP
rs774849993 967 dbSNP
rs200159545 968 dbSNP
rs769117434 969 dbSNP
rs1334026566 970 dbSNP
rs1214315493 975 dbSNP
rs1266092529 977 dbSNP
rs979509068 985 dbSNP
rs114989501 987 dbSNP
rs77803747 993 dbSNP
rs1184757930 995 dbSNP
rs756908145 996 dbSNP
rs568566917 998 dbSNP
rs182481621 999 dbSNP
rs965558562 1002 dbSNP
rs17152012 1009 dbSNP
rs969552387 1013 dbSNP
rs1004305862 1015 dbSNP
rs13228445 1016 dbSNP
rs111262901 1022 dbSNP
rs1370760942 1030 dbSNP
rs1048617147 1031 dbSNP
rs565900684 1033 dbSNP
rs1192720231 1038 dbSNP
rs546895549 1040 dbSNP
rs1045195851 1042 dbSNP
rs57651203 1045 dbSNP
rs1228755795 1049 dbSNP
rs564340445 1053 dbSNP
rs758293717 1058 dbSNP
rs1052273273 1065 dbSNP
rs935138034 1074 dbSNP
rs925208598 1079 dbSNP
rs1356264794 1080 dbSNP
rs1483487519 1082 dbSNP
rs960264362 1083 dbSNP
rs979343489 1084 dbSNP
rs1199758065 1085 dbSNP
rs1293081798 1086 dbSNP
rs13310009 1088 dbSNP
rs1485559065 1091 dbSNP
rs1182886044 1098 dbSNP
rs1416634904 1100 dbSNP
rs1426173987 1112 dbSNP
rs1026557367 1117 dbSNP
rs3178610 1121 dbSNP
rs1248649511 1123 dbSNP
rs185748601 1131 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_022116 | 3UTR | GGCCACAUAAUUCUUA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000356889.4 | 3UTR | ACAUAAUUCUUAAUGUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
67 hsa-miR-4491 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT056779 ARID5B AT-rich interaction domain 5B 2 2
MIRT061577 BTG2 BTG anti-proliferation factor 2 2 2
MIRT063828 SRP9 signal recognition particle 9 2 4
MIRT102306 DNAJB9 DnaJ heat shock protein family (Hsp40) member B9 2 10
MIRT186634 COX20 COX20, cytochrome c oxidase assembly factor 2 8
MIRT191243 STYX serine/threonine/tyrosine interacting protein 2 2
MIRT195908 SRSF11 serine and arginine rich splicing factor 11 2 4
MIRT240343 UBXN2B UBX domain protein 2B 2 2
MIRT271178 PTPN14 protein tyrosine phosphatase, non-receptor type 14 2 2
MIRT286219 TMEM97 transmembrane protein 97 2 4
MIRT314182 OCLN occludin 2 4
MIRT323938 AKAP2 A-kinase anchoring protein 2 2 4
MIRT323940 PALM2-AKAP2 PALM2-AKAP2 readthrough 2 4
MIRT340113 TXLNA taxilin alpha 2 2
MIRT450333 LRWD1 leucine rich repeats and WD repeat domain containing 1 2 2
MIRT451283 ZNF101 zinc finger protein 101 2 2
MIRT451879 SOD2 superoxide dismutase 2 2 8
MIRT453577 CRCP CGRP receptor component 2 2
MIRT454366 ASAH2 N-acylsphingosine amidohydrolase 2 2 2
MIRT454797 STOML3 stomatin like 3 2 2
MIRT459801 POTED POTE ankyrin domain family member D 2 10
MIRT460911 POLQ DNA polymerase theta 2 2
MIRT468082 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 6
MIRT470281 PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 2 2
MIRT471876 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT476147 GPR137C G protein-coupled receptor 137C 2 8
MIRT478056 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 10
MIRT501054 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 4
MIRT501732 OVOL1 ovo like transcriptional repressor 1 2 2
MIRT502214 HSPB8 heat shock protein family B (small) member 8 2 2
MIRT505243 UBE2D3 ubiquitin conjugating enzyme E2 D3 2 2
MIRT505957 RAN RAN, member RAS oncogene family 2 6
MIRT507996 BCL2L13 BCL2 like 13 2 4
MIRT510433 ZNF207 zinc finger protein 207 2 6
MIRT510827 SBNO1 strawberry notch homolog 1 2 4
MIRT511493 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 4
MIRT512129 CREBL2 cAMP responsive element binding protein like 2 2 8
MIRT514512 SHISA9 shisa family member 9 2 4
MIRT516482 RAB32 RAB32, member RAS oncogene family 2 4
MIRT519514 RBM22 RNA binding motif protein 22 2 4
MIRT523367 GTF2A1 general transcription factor IIA subunit 1 2 2
MIRT524217 DDI2 DNA damage inducible 1 homolog 2 2 6
MIRT524649 C4orf32 family with sequence similarity 241 member A 2 2
MIRT528297 ZNF76 zinc finger protein 76 2 2
MIRT528577 ITGB3BP integrin subunit beta 3 binding protein 2 2
MIRT530458 SULT1B1 sulfotransferase family 1B member 1 2 2
MIRT535774 MYCN MYCN proto-oncogene, bHLH transcription factor 2 2
MIRT544239 CCBL2 kynurenine aminotransferase 3 2 2
MIRT546733 RNF217 ring finger protein 217 2 2
MIRT550360 INCENP inner centromere protein 2 4
MIRT553343 TRPC3 transient receptor potential cation channel subfamily C member 3 2 4
MIRT556629 LAPTM4A lysosomal protein transmembrane 4 alpha 2 2
MIRT558006 FAM122B family with sequence similarity 122B 2 2
MIRT558994 CA8 carbonic anhydrase 8 2 2
MIRT560418 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 2 2
MIRT565717 SESN3 sestrin 3 2 2
MIRT566271 PTAR1 protein prenyltransferase alpha subunit repeat containing 1 2 2
MIRT568161 CCDC6 coiled-coil domain containing 6 2 2
MIRT569753 C2orf71 chromosome 2 open reading frame 71 2 2
MIRT573959 FIGNL1 fidgetin like 1 2 2
MIRT574530 PEG10 paternally expressed 10 2 2
MIRT609453 CCDC149 coiled-coil domain containing 149 2 2
MIRT614047 THBS2 thrombospondin 2 2 2
MIRT628418 ATMIN ATM interactor 2 2
MIRT689556 XPO6 exportin 6 2 2
MIRT725598 CDH7 cadherin 7 2 2
MIRT735561 TRIM7 tripartite motif containing 7 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated

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