miRTarBase - #MIRT574231


—
pre-miRNA Information
pre-miRNA hsa-mir-4656   
Genomic Coordinates chr7: 4788565 - 4788639
Description Homo sapiens miR-4656 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4656
Sequence 10| UGGGCUGAGGGCAGGAGGCCUGU |32
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1257485407 2 dbSNP
rs71535143 5 dbSNP
rs933178228 7 dbSNP
rs895666746 9 dbSNP
rs1053330554 11 dbSNP
rs1327822621 13 dbSNP
rs934599733 16 dbSNP
rs1260841927 19 dbSNP
rs1371177672 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol DMRT2   
Synonyms -
Description doublesex and mab-3 related transcription factor 2
Transcript NM_006557   
Other Transcripts NM_001130865 , NM_181872   
Expression
Putative miRNA Targets on DMRT2
3'UTR of DMRT2
(miRNA target sites are highlighted)		 
>DMRT2|NM_006557|3'UTR
   1 AAAATAAAAGTGACATCAGCTCTAGGTATAGATATATTTTTTAATAATGAAAAAAGATGACATGGATAATAATAAAACAT
  81 TGATTGATACAAGATAAATAGTCTTGTCTCTTAATGCGTAGGGGGCCTGGGAAGAATATTAAAATTTTAATCAATAAAGT
 161 ATGTCTGTTGAAGCAAGCAAGCAAACAAATCCATAACAACCACAACAAGCAACAAGAACAAGAACAACAACAAGAAGAAG
 241 TTGCAGTATGGATATCTTTCACCCTCCCAGGAAACTCTTTCAAACCTAATCTGTACTTTTGCATCTGTATAAAAATATCA
 321 GTGAGATGGAACTGTAAATAATTGTTCTGCTGATCTGTAGTGTTGCTGTTACCTTCTGGGTTTCCACATTTTTATTCCGT
 401 AGATGTTAATCTCTTTCATGTGCAATCTTTGCTTCTTGTAGGCTATCGCCCCATTCCAGCGGAGACTTATGTAGGAGGGA
 481 CCTTCCCTCTACCTCCCCCAGTTAGTGACAGGATGAGGAAAAGAAGAGCCTTTGCTGATAAAGAGTTGGAGAACATTATG
 561 CTGGAGAGAGAATATAAAGAAAGGGAGATGTTGGAAACTTCTCAAGCTGCTGCTCTGTTTCTGCCCAACCGCATGGTGCC
 641 TGGACCTGACTACAATTCCTACAAAAGTGCCTACAGCCCCAGCCCAGTGGAACCACCAAGCAAGGACTTCTGTAATTTTT
 721 TGCCCACCTGCCTTGATTTAACCATGCAGTATTCAGGGTCTGGGAATATGGAACTAATTTCTTCTAATGTCAGCGTGGCC
 801 ACAACTTATAGACAGTATCCCTTGTCCTCAAGATTTTTAGTTTGGCCCAAGTGTGGCCCCATTAGCGACACCCTCCTCTA
 881 CCAGCAATGCCTGCTAAATGCCACCACCTCAGTTCAAGCCCTGAAGCCTGGGGCCAGCTGGGACTTGAAGGGAGCACGAG
 961 TCCAGGATGGACTCAGTGCAGAGCAGGACATGATGCCATCGAAATTGGAAGGTTCCCTGGTGCTGCCTCACACTCCTGAG
1041 ATCCAGACCACGAGAAGTGACCTTCAGGGTCATCAGGCTGTCCCAGAGAGGTCCGCGTTCTCCCCACCCCGACGGAATTT
1121 CTCTCCCATTGTTGACACGGACTCCCTGGCAGCTCAAGGGCATGTCTTAACGAAGATCAGCAAAGAAAACACCAGGCACC
1201 CTCTGCCACTTAGACATAATCCATTCCACTCATTATTCCAGCAAACACTTACTGACAAATCGGGTCCTGAGTTGAAAACA
1281 CCATTTGTCAAAGAGGCCTTTGAAGAGACCCCTAAGAAACACAGAGAGTGTTTAGTTAAGGACAACCAGAAGTACACATT
1361 TACAATAGATAGATGTGCAAAAGACCTTTTTGTAGCCAAACAAGTTGGAACAAAACTCTCGGTGAATGAACCACTGTCAT
1441 TTTCTGTTGAGTCTATTCTTAAGAGGCCTTCATCTGCCATCACTCGTGTCTCTCAGTGAAAGGCTGCTTAAACAGAAAGC
1521 TGGATTTTCTGCAGTCTTAGAGCATTATAGCCATTTGCTACTTTTTTTAAAAGTTAAGATGTTTGTGTAAAGAAATTTCT
1601 AATGTAAAGATGATGATTTTGAAAAATTTTATATATTCCTAATATGCATGTACTTTTTCTTATCACATATATTTAAACTT
1681 ACAGATGGAAATTGCCCAATGTGCAAATTGTTAAGTACCACACTTTACACAGCATTTCAAAAAGCAATAAAATTGACACT
1761 GTCTTCTCAAAGACCCAATAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ugUC-CGGAGGACGGGAGUCGGGu 5'
            || |||| | | || |||||| 
Target 5' aaAGTGCCTACAG-CCCCAGCCCa 3'
 664 - 686 136.00 -28.00
2 
miRNA  3' uguccggaggACGGGAGUCGGGu 5'
                    || | |||||:| 
Target 5' aaaataaaagTGACATCAGCTCt 3'
 1 - 23 133.00 -12.30
3 
miRNA  3' ugUCCGGAGGACGGGAGUCGGGu 5'
            | ||| ||   ||||||::| 
Target 5' aaATGCCACC--ACCTCAGTTCa 3'
 896 - 916 129.00 -21.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
776401 625 ClinVar
708805 629 ClinVar
776402 959 ClinVar
COSN30512587 36 COSMIC
COSN18733756 43 COSMIC
COSN31504926 62 COSMIC
COSN18733942 97 COSMIC
COSN31599391 98 COSMIC
COSN30151530 111 COSMIC
COSN31511891 111 COSMIC
COSN30533569 119 COSMIC
COSN30530111 155 COSMIC
COSN30106953 165 COSMIC
COSN31540691 232 COSMIC
COSN30167578 257 COSMIC
COSN18250594 276 COSMIC
COSN30115269 295 COSMIC
COSN31519342 314 COSMIC
COSN28770090 328 COSMIC
COSN30186961 356 COSMIC
COSN31507695 356 COSMIC
COSN30156198 382 COSMIC
COSN30104627 388 COSMIC
COSN30176004 400 COSMIC
COSN31604347 403 COSMIC
COSN30112918 419 COSMIC
COSN26973602 428 COSMIC
COSN30187897 428 COSMIC
COSN30111077 432 COSMIC
COSM9850064 444 COSMIC
COSM4979638 448 COSMIC
COSM269031 449 COSMIC
COSM5580840 453 COSMIC
COSM3652437 457 COSMIC
COSM3652438 458 COSMIC
COSM3902667 461 COSMIC
COSM4678137 465 COSMIC
COSM8880134 469 COSMIC
COSM3724720 475 COSMIC
COSM6883116 486 COSMIC
COSM6883115 487 COSMIC
COSM5919705 497 COSMIC
COSM4557008 524 COSMIC
COSM6453661 527 COSMIC
COSM9246808 548 COSMIC
COSM8822183 552 COSMIC
COSM5759997 555 COSMIC
COSM5445193 565 COSMIC
COSM8827509 566 COSMIC
COSM1459012 569 COSMIC
COSM3167433 569 COSMIC
COSM4678138 571 COSMIC
COSM7456571 584 COSMIC
COSM7428115 592 COSMIC
COSM7485366 593 COSMIC
COSM6056557 602 COSMIC
COSM9861204 604 COSMIC
COSM9453630 616 COSMIC
COSM4800056 617 COSMIC
COSM3779489 626 COSMIC
COSM3167435 631 COSMIC
COSM3413204 632 COSMIC
COSM752227 641 COSMIC
COSM9107614 642 COSMIC
COSM9379472 659 COSMIC
COSM5990506 675 COSMIC
COSM7625262 678 COSMIC
COSM5503441 683 COSMIC
COSM6114532 685 COSMIC
COSM74383 697 COSMIC
COSM9714267 697 COSMIC
COSM4588304 698 COSMIC
COSM1103406 705 COSMIC
COSM1103407 716 COSMIC
COSM5153037 724 COSMIC
COSM9861396 725 COSMIC
COSM8849808 729 COSMIC
COSM6645676 736 COSMIC
COSM8431420 737 COSMIC
COSM9315189 740 COSMIC
COSM3902668 762 COSMIC
COSM3167438 772 COSMIC
COSM3847217 782 COSMIC
COSM4600709 782 COSMIC
COSM4455976 788 COSMIC
COSM6114531 790 COSMIC
COSM1624371 791 COSMIC
COSM4654411 794 COSMIC
COSM5662337 794 COSMIC
COSM3902669 795 COSMIC
COSM1459013 799 COSMIC
COSM3902670 807 COSMIC
COSM8894412 808 COSMIC
COSM9018430 813 COSMIC
COSM7251315 818 COSMIC
COSM8447186 821 COSMIC
COSM5559334 823 COSMIC
COSM3167439 827 COSMIC
COSM4915634 833 COSMIC
COSM8421646 834 COSMIC
COSM1250271 849 COSMIC
COSM4678139 857 COSMIC
COSM8439758 858 COSMIC
COSM137515 868 COSMIC
COSM7152361 869 COSMIC
COSM9619909 893 COSMIC
COSM383586 894 COSMIC
COSM4600730 913 COSMIC
COSM486847 916 COSMIC
COSM4794039 921 COSMIC
COSM8857549 927 COSMIC
COSM7195036 931 COSMIC
COSM5410069 939 COSMIC
COSM6013354 942 COSMIC
COSM4568400 947 COSMIC
COSM9723566 948 COSMIC
COSM1103408 955 COSMIC
COSM3982647 955 COSMIC
COSM4408833 955 COSMIC
COSM291991 956 COSMIC
COSM9575373 958 COSMIC
COSM7884033 966 COSMIC
COSM7194653 969 COSMIC
COSM230167 992 COSMIC
COSM9064646 994 COSMIC
COSM8594568 997 COSMIC
COSM1176737 1001 COSMIC
COSM9511100 1002 COSMIC
COSM8144824 1008 COSMIC
COSM237296 1026 COSMIC
COSM4803714 1036 COSMIC
COSM9732019 1044 COSMIC
COSM3929704 1050 COSMIC
COSM7364645 1052 COSMIC
COSM8608557 1060 COSMIC
COSM1250267 1067 COSMIC
COSM3652439 1072 COSMIC
COSM7656319 1075 COSMIC
COSM4462959 1083 COSMIC
COSM9619910 1084 COSMIC
COSM5547802 1085 COSMIC
COSM1700784 1087 COSMIC
COSM5410070 1094 COSMIC
COSM5976989 1095 COSMIC
COSM9379474 1095 COSMIC
COSM6051264 1096 COSMIC
COSM351842 1105 COSMIC
COSM5759998 1105 COSMIC
COSM3847218 1107 COSMIC
COSM5522506 1110 COSMIC
COSM5522505 1111 COSMIC
COSM6645679 1111 COSMIC
COSM4588305 1114 COSMIC
COSM1250272 1115 COSMIC
COSM319926 1115 COSMIC
COSM5172366 1119 COSMIC
COSM5606477 1122 COSMIC
COSM5529852 1126 COSMIC
COSM5875258 1135 COSMIC
COSM8505550 1139 COSMIC
COSM302065 1140 COSMIC
COSM1250270 1142 COSMIC
COSM8120436 1145 COSMIC
COSM8963263 1147 COSMIC
COSM8857534 1172 COSMIC
COSM9735242 1173 COSMIC
COSM8742791 1176 COSMIC
COSM9284704 1176 COSMIC
COSM1635946 1183 COSMIC
COSM1103409 1186 COSMIC
COSM3763495 1186 COSMIC
COSM6549902 1197 COSMIC
COSM3847219 1199 COSMIC
COSM1459014 1202 COSMIC
COSM8903609 1214 COSMIC
COSM6044234 1218 COSMIC
COSM36855 1222 COSMIC
COSM1203866 1223 COSMIC
COSM8852565 1225 COSMIC
COSM7669018 1227 COSMIC
COSM9454074 1228 COSMIC
COSM5043771 1244 COSMIC
COSM4466693 1262 COSMIC
COSM7928637 1268 COSMIC
COSM7174616 1270 COSMIC
COSM9379473 1283 COSMIC
COSM7201015 1294 COSMIC
COSM7463080 1299 COSMIC
COSM8540791 1302 COSMIC
COSM1718620 1306 COSMIC
COSM9720069 1311 COSMIC
COSM3652440 1317 COSMIC
COSM8875123 1325 COSMIC
COSM9166573 1343 COSMIC
COSM131400 1346 COSMIC
COSM3716105 1369 COSMIC
COSM3925814 1384 COSMIC
COSM9096467 1391 COSMIC
COSM4678140 1418 COSMIC
COSM3925815 1420 COSMIC
COSM5001260 1421 COSMIC
COSM5045637 1423 COSMIC
COSM7662235 1429 COSMIC
COSM5435271 1431 COSMIC
COSM6645675 1438 COSMIC
COSM5759999 1439 COSMIC
COSM3652441 1445 COSMIC
COSM3779490 1450 COSMIC
COSM1103410 1466 COSMIC
COSM6182184 1467 COSMIC
COSM3902671 1470 COSMIC
COSM1241084 1477 COSMIC
COSM5590564 1486 COSMIC
COSM6488672 1486 COSMIC
COSM5430887 1488 COSMIC
COSN14692149 1545 COSMIC
COSN30505116 1551 COSMIC
COSN18733943 1578 COSMIC
COSN1371062 1670 COSMIC
rs17641078 1186 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs755600953 3 dbSNP
rs779575754 9 dbSNP
rs748931401 11 dbSNP
rs774186247 12 dbSNP
rs747929955 14 dbSNP
rs927269738 15 dbSNP
rs567611497 16 dbSNP
rs1209343726 17 dbSNP
rs1259913669 18 dbSNP
rs773032376 19 dbSNP
rs760615461 20 dbSNP
rs1346426328 23 dbSNP
rs200747181 29 dbSNP
rs1479758473 31 dbSNP
rs775611126 32 dbSNP
rs1288781179 34 dbSNP
rs1216705094 36 dbSNP
rs780075531 36 dbSNP
rs749556839 37 dbSNP
rs763319388 37 dbSNP
rs1403367793 42 dbSNP
rs1056054227 45 dbSNP
rs1415675359 50 dbSNP
rs764399352 50 dbSNP
rs752039179 52 dbSNP
rs1385977702 58 dbSNP
rs6474554 60 dbSNP
rs1358515789 61 dbSNP
rs1464419842 61 dbSNP
rs1170818199 64 dbSNP
rs1411479097 65 dbSNP
rs78320923 73 dbSNP
rs1169490927 78 dbSNP
rs1045531792 79 dbSNP
rs1259005082 80 dbSNP
rs902851404 81 dbSNP
rs1483176780 84 dbSNP
rs1233991267 85 dbSNP
rs1207018032 86 dbSNP
rs998558025 91 dbSNP
rs944286982 93 dbSNP
rs1039963337 94 dbSNP
rs12350001 97 dbSNP
rs1291449756 102 dbSNP
rs1226633114 104 dbSNP
rs1000556180 105 dbSNP
rs1032479709 109 dbSNP
rs533882403 111 dbSNP
rs893379124 118 dbSNP
rs553542064 119 dbSNP
rs1018201341 121 dbSNP
rs1461579177 127 dbSNP
rs1419590286 130 dbSNP
rs966265368 136 dbSNP
rs1162036929 137 dbSNP
rs1422761964 146 dbSNP
rs1408137167 147 dbSNP
rs1179447656 154 dbSNP
rs755166695 155 dbSNP
rs976119024 157 dbSNP
rs1026396885 160 dbSNP
rs950712213 163 dbSNP
rs1214717354 169 dbSNP
rs781339152 175 dbSNP
rs980669935 178 dbSNP
rs1271536021 180 dbSNP
rs1033617798 184 dbSNP
rs909776942 187 dbSNP
rs753089394 188 dbSNP
rs375024785 190 dbSNP
rs1463329974 193 dbSNP
rs1309322079 194 dbSNP
rs57558840 202 dbSNP
rs974114094 203 dbSNP
rs1330360330 205 dbSNP
rs778355444 206 dbSNP
rs1396174779 211 dbSNP
rs1291400796 217 dbSNP
rs1457144272 219 dbSNP
rs1387053686 225 dbSNP
rs915713701 226 dbSNP
rs1438319465 228 dbSNP
rs1194607413 232 dbSNP
rs764103857 232 dbSNP
rs1455830505 234 dbSNP
rs1251572938 244 dbSNP
rs982868346 246 dbSNP
rs1486355696 247 dbSNP
rs949905362 250 dbSNP
rs1213757485 252 dbSNP
rs1351353893 257 dbSNP
rs1308488886 259 dbSNP
rs912718250 261 dbSNP
rs749744094 263 dbSNP
rs867910424 268 dbSNP
rs902944954 269 dbSNP
rs1299006886 275 dbSNP
rs542434676 277 dbSNP
rs115628248 279 dbSNP
rs770540681 282 dbSNP
rs936303512 287 dbSNP
rs1053460848 288 dbSNP
rs879211032 289 dbSNP
rs893357247 292 dbSNP
rs892166636 294 dbSNP
rs576494807 302 dbSNP
rs545363391 304 dbSNP
rs1376280802 306 dbSNP
rs1198608433 311 dbSNP
rs1429284993 322 dbSNP
rs1340058999 324 dbSNP
rs7854435 328 dbSNP
rs761984453 329 dbSNP
rs527977472 330 dbSNP
rs902016911 336 dbSNP
rs1240047538 337 dbSNP
rs777527976 342 dbSNP
rs997673023 344 dbSNP
rs1281192842 348 dbSNP
rs1284416163 350 dbSNP
rs1211500097 357 dbSNP
rs1349967736 358 dbSNP
rs541703034 362 dbSNP
rs1253964964 363 dbSNP
rs1353300712 366 dbSNP
rs139750292 367 dbSNP
rs530290818 381 dbSNP
rs1002054081 382 dbSNP
rs1397800700 384 dbSNP
rs566760422 396 dbSNP
rs73639841 399 dbSNP
rs200344245 400 dbSNP
rs368061891 403 dbSNP
rs1352431143 404 dbSNP
rs371620803 406 dbSNP
rs1303543763 414 dbSNP
rs756612843 415 dbSNP
rs779477815 418 dbSNP
rs1016665785 420 dbSNP
rs1462842653 423 dbSNP
rs374105107 424 dbSNP
rs1362538654 427 dbSNP
rs959425855 428 dbSNP
rs1294887676 431 dbSNP
rs1305998551 433 dbSNP
rs754689364 436 dbSNP
rs778539981 437 dbSNP
rs747736710 438 dbSNP
rs991813721 439 dbSNP
rs147915017 446 dbSNP
rs771880057 448 dbSNP
rs140044845 449 dbSNP
rs1416690948 451 dbSNP
rs949833304 454 dbSNP
rs1425041322 457 dbSNP
rs551354184 458 dbSNP
rs150037258 461 dbSNP
rs750152971 462 dbSNP
rs774728680 463 dbSNP
rs762086031 465 dbSNP
rs1429870526 467 dbSNP
rs145393386 471 dbSNP
rs750776434 472 dbSNP
rs1054238168 473 dbSNP
rs117442751 477 dbSNP
rs1316053446 479 dbSNP
rs143412065 480 dbSNP
rs1260007650 481 dbSNP
rs754273874 483 dbSNP
rs567238365 484 dbSNP
rs1271483498 485 dbSNP
rs778341971 487 dbSNP
rs752382017 488 dbSNP
rs1240855843 489 dbSNP
rs1462307770 490 dbSNP
rs777480829 493 dbSNP
rs371109443 494 dbSNP
rs1418874738 496 dbSNP
rs1442344296 498 dbSNP
rs536429516 499 dbSNP
rs781196289 500 dbSNP
rs755176631 507 dbSNP
rs1316205338 509 dbSNP
rs745742270 511 dbSNP
rs768880682 516 dbSNP
rs1047898804 518 dbSNP
rs774540660 522 dbSNP
rs151137458 528 dbSNP
rs772322958 531 dbSNP
rs140260278 535 dbSNP
rs1438390558 537 dbSNP
rs1281640003 539 dbSNP
rs773514965 540 dbSNP
rs144231415 541 dbSNP
rs145305702 546 dbSNP
rs577840890 549 dbSNP
rs137937636 554 dbSNP
rs759993378 555 dbSNP
rs764770254 558 dbSNP
rs1229716476 561 dbSNP
rs1353619421 562 dbSNP
rs199884471 563 dbSNP
rs776693164 564 dbSNP
rs1240301978 565 dbSNP
rs758048987 568 dbSNP
rs1233084659 569 dbSNP
rs763801083 570 dbSNP
rs1159018712 571 dbSNP
rs1156560555 573 dbSNP
rs201385986 575 dbSNP
rs1470208530 576 dbSNP
rs1446547583 577 dbSNP
rs757088485 580 dbSNP
rs1405352937 582 dbSNP
rs781086682 588 dbSNP
rs745840162 590 dbSNP
rs756097043 599 dbSNP
rs1351744887 604 dbSNP
rs1403868554 605 dbSNP
rs1390099709 607 dbSNP
rs142530282 610 dbSNP
rs1470440376 612 dbSNP
rs779191867 613 dbSNP
rs1278102396 614 dbSNP
rs748253953 616 dbSNP
rs576477121 618 dbSNP
rs1405767972 619 dbSNP
rs538794732 621 dbSNP
rs1320872951 622 dbSNP
rs747148906 624 dbSNP
rs72703236 625 dbSNP
rs776953319 626 dbSNP
rs1449583264 627 dbSNP
rs138608089 629 dbSNP
rs775052048 631 dbSNP
rs541457019 632 dbSNP
rs751249241 634 dbSNP
rs149317681 639 dbSNP
rs202082191 640 dbSNP
rs756821292 645 dbSNP
rs1225239229 646 dbSNP
rs199974594 647 dbSNP
rs146546123 651 dbSNP
rs994756718 655 dbSNP
rs756187071 656 dbSNP
rs955880067 657 dbSNP
rs1306569931 661 dbSNP
rs1367923533 662 dbSNP
rs1452982808 667 dbSNP
rs780144126 669 dbSNP
rs749118381 670 dbSNP
rs777672832 671 dbSNP
rs747291755 676 dbSNP
rs368560020 677 dbSNP
rs1026674641 678 dbSNP
rs1476808379 679 dbSNP
rs771122278 680 dbSNP
rs777041286 682 dbSNP
rs372851397 685 dbSNP
rs1221423734 689 dbSNP
rs770081495 693 dbSNP
rs1430188675 694 dbSNP
rs914360965 695 dbSNP
rs377059611 696 dbSNP
rs763320879 697 dbSNP
rs144648877 698 dbSNP
rs773704993 701 dbSNP
rs1488969301 702 dbSNP
rs371164792 704 dbSNP
rs1425730983 705 dbSNP
rs1302882621 707 dbSNP
rs750029316 708 dbSNP
rs563777846 711 dbSNP
rs766223609 713 dbSNP
rs1038715336 714 dbSNP
rs1174896929 724 dbSNP
rs1325411950 725 dbSNP
rs753842208 726 dbSNP
rs754836991 727 dbSNP
rs1359663475 729 dbSNP
rs777960815 731 dbSNP
rs1421462755 732 dbSNP
rs1429043596 733 dbSNP
rs757702014 735 dbSNP
rs140701396 743 dbSNP
rs16928356 744 dbSNP
rs746033739 745 dbSNP
rs770167252 746 dbSNP
rs1412512028 747 dbSNP
rs780242958 751 dbSNP
rs1424262601 752 dbSNP
rs749842545 757 dbSNP
rs147471809 759 dbSNP
rs1445410381 760 dbSNP
rs758428225 761 dbSNP
rs1163354125 762 dbSNP
rs1160200048 772 dbSNP
rs564642993 773 dbSNP
rs527258854 774 dbSNP
rs141302557 775 dbSNP
rs773977303 782 dbSNP
rs112701754 786 dbSNP
rs761412181 788 dbSNP
rs182646996 789 dbSNP
rs773017461 792 dbSNP
rs760360224 794 dbSNP
rs371344054 795 dbSNP
rs140004479 796 dbSNP
rs1208693338 797 dbSNP
rs142906421 799 dbSNP
rs376262081 806 dbSNP
rs199502026 809 dbSNP
rs781201005 810 dbSNP
rs750675828 815 dbSNP
rs151086071 817 dbSNP
rs1006425526 828 dbSNP
rs780517526 832 dbSNP
rs1461943479 844 dbSNP
rs749610895 851 dbSNP
rs779299775 852 dbSNP
rs748613087 853 dbSNP
rs1234008473 857 dbSNP
rs1381478071 858 dbSNP
rs1214897873 861 dbSNP
rs200683258 862 dbSNP
rs772814583 863 dbSNP
rs1358356736 866 dbSNP
rs113748895 867 dbSNP
rs770480487 868 dbSNP
rs1406258869 870 dbSNP
rs759258940 871 dbSNP
rs765028262 872 dbSNP
rs564464685 873 dbSNP
rs775428927 874 dbSNP
rs1475232006 877 dbSNP
rs762838054 880 dbSNP
rs944994027 881 dbSNP
rs1203340466 882 dbSNP
rs1483249607 888 dbSNP
rs767625504 890 dbSNP
rs750482012 891 dbSNP
rs139912017 902 dbSNP
rs756393184 903 dbSNP
rs1046103823 905 dbSNP
rs1263673490 906 dbSNP
rs752860436 907 dbSNP
rs754033173 911 dbSNP
rs755320432 917 dbSNP
rs1481714601 920 dbSNP
rs1178155730 922 dbSNP
rs779292473 926 dbSNP
rs371929280 927 dbSNP
rs375071878 928 dbSNP
rs777481724 930 dbSNP
rs746515910 931 dbSNP
rs1323565511 933 dbSNP
rs369891962 934 dbSNP
rs895237252 936 dbSNP
rs776165447 938 dbSNP
rs745479643 944 dbSNP
rs1462126006 945 dbSNP
rs769507886 946 dbSNP
rs202027041 951 dbSNP
rs762928577 953 dbSNP
rs3824419 955 dbSNP
rs760681935 958 dbSNP
rs72703237 959 dbSNP
rs1299214211 963 dbSNP
rs1309491782 969 dbSNP
rs765743642 970 dbSNP
rs753096035 976 dbSNP
rs1482307636 977 dbSNP
rs191456726 978 dbSNP
rs759044350 982 dbSNP
rs778431616 986 dbSNP
rs1031631742 988 dbSNP
rs375812912 990 dbSNP
rs756745369 996 dbSNP
rs1428587897 997 dbSNP
rs142308383 1001 dbSNP
rs150989542 1002 dbSNP
rs769466615 1004 dbSNP
rs779154249 1004 dbSNP
rs575076415 1006 dbSNP
rs749085023 1009 dbSNP
rs1364902520 1013 dbSNP
rs521525 1014 dbSNP
rs1438193635 1016 dbSNP
rs543802092 1020 dbSNP
rs774294154 1023 dbSNP
rs761770101 1025 dbSNP
rs536600958 1026 dbSNP
rs776746176 1027 dbSNP
rs1340255024 1028 dbSNP
rs140844621 1030 dbSNP
rs1292886057 1032 dbSNP
rs765548746 1033 dbSNP
rs922923589 1036 dbSNP
rs372603448 1037 dbSNP
rs1244323136 1044 dbSNP
rs763426492 1047 dbSNP
rs556954799 1048 dbSNP
rs1242291361 1049 dbSNP
rs149054600 1052 dbSNP
rs752041820 1053 dbSNP
rs757751363 1057 dbSNP
rs1369305585 1069 dbSNP
rs1163989362 1071 dbSNP
rs1384454829 1075 dbSNP
rs780616964 1078 dbSNP
rs143092642 1079 dbSNP
rs755790680 1080 dbSNP
rs1456937834 1081 dbSNP
rs779693419 1083 dbSNP
rs748889790 1085 dbSNP
rs1363301109 1086 dbSNP
rs377182125 1090 dbSNP
rs148245031 1091 dbSNP
rs140337454 1095 dbSNP
rs772030456 1096 dbSNP
rs41311430 1097 dbSNP
rs138207989 1098 dbSNP
rs775881772 1101 dbSNP
rs879139735 1103 dbSNP
rs113111105 1104 dbSNP
rs748491009 1105 dbSNP
rs764593509 1106 dbSNP
rs762285885 1109 dbSNP
rs370513290 1111 dbSNP
rs750836199 1112 dbSNP
rs1233739511 1113 dbSNP
rs147461872 1114 dbSNP
rs754599241 1115 dbSNP
rs778628435 1122 dbSNP
rs747967718 1123 dbSNP
rs758059465 1124 dbSNP
rs779378470 1126 dbSNP
rs777782068 1127 dbSNP
rs746875160 1129 dbSNP
rs770028960 1137 dbSNP
rs749570805 1139 dbSNP
rs768987240 1140 dbSNP
rs762245772 1141 dbSNP
rs1325134771 1145 dbSNP
rs767723063 1146 dbSNP
rs1011796825 1147 dbSNP
rs374194584 1151 dbSNP
rs1440293321 1152 dbSNP
rs1175612918 1153 dbSNP
rs1021446037 1154 dbSNP
rs776272323 1159 dbSNP
rs761138365 1160 dbSNP
rs1233175304 1161 dbSNP
rs1040299694 1162 dbSNP
rs765923425 1164 dbSNP
rs549760271 1172 dbSNP
rs545209212 1173 dbSNP
rs1201012794 1176 dbSNP
rs764944158 1177 dbSNP
rs752235879 1179 dbSNP
rs758237833 1180 dbSNP
rs777395007 1185 dbSNP
rs17641078 1186 dbSNP
rs1254091349 1190 dbSNP
rs1231983365 1193 dbSNP
rs149583126 1194 dbSNP
rs780340349 1198 dbSNP
rs150135765 1200 dbSNP
rs138967351 1202 dbSNP
rs1011034650 1203 dbSNP
rs774653993 1204 dbSNP
rs966902183 1206 dbSNP
rs566158765 1207 dbSNP
rs144310366 1209 dbSNP
rs773423016 1212 dbSNP
rs761228142 1215 dbSNP
rs1270995543 1216 dbSNP
rs777055521 1217 dbSNP
rs267602063 1222 dbSNP
rs1035290328 1227 dbSNP
rs942307099 1228 dbSNP
rs759059175 1230 dbSNP
rs1320190098 1232 dbSNP
rs764604885 1232 dbSNP
rs554993616 1236 dbSNP
rs757957177 1237 dbSNP
rs1390990741 1239 dbSNP
rs1429553863 1240 dbSNP
rs763998352 1242 dbSNP
rs1368017491 1243 dbSNP
rs1425487042 1247 dbSNP
rs772694365 1249 dbSNP
rs751391192 1253 dbSNP
rs1434037688 1257 dbSNP
rs781283086 1257 dbSNP
rs1328908859 1260 dbSNP
rs376933173 1262 dbSNP
rs531076387 1263 dbSNP
rs755113123 1264 dbSNP
rs916734285 1265 dbSNP
rs1196426488 1268 dbSNP
rs778824742 1273 dbSNP
rs373556245 1274 dbSNP
rs772166978 1276 dbSNP
rs568323734 1279 dbSNP
rs1265160639 1280 dbSNP
rs1243285536 1282 dbSNP
rs773069864 1283 dbSNP
rs368056380 1284 dbSNP
rs141434125 1288 dbSNP
rs1313828043 1289 dbSNP
rs769386836 1294 dbSNP
rs774840680 1296 dbSNP
rs371521290 1298 dbSNP
rs763653228 1306 dbSNP
rs751193192 1310 dbSNP
rs1163237745 1312 dbSNP
rs761716276 1313 dbSNP
rs767378535 1317 dbSNP
rs1320578263 1322 dbSNP
rs537457583 1323 dbSNP
rs779103375 1326 dbSNP
rs752714481 1327 dbSNP
rs1316711428 1328 dbSNP
rs758436447 1329 dbSNP
rs1448026805 1334 dbSNP
rs376847583 1340 dbSNP
rs1263648069 1341 dbSNP
rs41298155 1343 dbSNP
rs771318177 1344 dbSNP
rs1268778618 1346 dbSNP
rs142405639 1347 dbSNP
rs1414116987 1349 dbSNP
rs1186970700 1350 dbSNP
rs1459333542 1351 dbSNP
rs746436667 1354 dbSNP
rs770188466 1355 dbSNP
rs775136507 1356 dbSNP
rs762377818 1357 dbSNP
rs146385338 1358 dbSNP
rs1446814343 1359 dbSNP
rs774172074 1359 dbSNP
rs761523956 1360 dbSNP
rs767466352 1361 dbSNP
rs139766473 1364 dbSNP
rs760728698 1366 dbSNP
rs1436867496 1367 dbSNP
rs1289901021 1368 dbSNP
rs766231319 1371 dbSNP
rs1395267343 1372 dbSNP
rs753750991 1375 dbSNP
rs1337469927 1376 dbSNP
rs758427884 1378 dbSNP
rs764120857 1379 dbSNP
rs751821481 1382 dbSNP
rs369760437 1383 dbSNP
rs781594613 1384 dbSNP
rs1040242825 1387 dbSNP
rs746218872 1391 dbSNP
rs201072097 1392 dbSNP
rs767572237 1393 dbSNP
rs780441362 1394 dbSNP
rs900438112 1398 dbSNP
rs932633102 1403 dbSNP
rs749756591 1405 dbSNP
rs144543184 1406 dbSNP
rs773972613 1407 dbSNP
rs747858040 1408 dbSNP
rs1471342698 1411 dbSNP
rs137867694 1412 dbSNP
rs1359395368 1415 dbSNP
rs772853895 1417 dbSNP
rs200441986 1421 dbSNP
rs146415672 1422 dbSNP
rs1410186556 1423 dbSNP
rs776463369 1425 dbSNP
rs1307381213 1428 dbSNP
rs4741029 1431 dbSNP
rs1478589200 1433 dbSNP
rs764208861 1434 dbSNP
rs13296834 1439 dbSNP
rs13297428 1440 dbSNP
rs751627154 1444 dbSNP
rs757543051 1447 dbSNP
rs1232893517 1448 dbSNP
rs767735578 1450 dbSNP
rs1484265507 1452 dbSNP
rs750605221 1454 dbSNP
rs1251757841 1462 dbSNP
rs756460105 1468 dbSNP
rs1200969390 1469 dbSNP
rs780429301 1473 dbSNP
rs1021078808 1474 dbSNP
rs749806998 1476 dbSNP
rs371831083 1477 dbSNP
rs755526203 1479 dbSNP
rs778629637 1480 dbSNP
rs556197778 1483 dbSNP
rs771650790 1484 dbSNP
rs764328228 1486 dbSNP
rs770673047 1487 dbSNP
rs772480908 1487 dbSNP
rs773732202 1489 dbSNP
rs1330594430 1493 dbSNP
rs776466458 1494 dbSNP
rs928010438 1497 dbSNP
rs1298890724 1501 dbSNP
rs202045027 1504 dbSNP
rs759527693 1506 dbSNP
rs765155889 1507 dbSNP
rs1362402492 1513 dbSNP
rs775343120 1514 dbSNP
rs761898433 1518 dbSNP
rs1333029120 1520 dbSNP
rs72703239 1521 dbSNP
rs374340988 1524 dbSNP
rs760926881 1530 dbSNP
rs766709953 1532 dbSNP
rs754221398 1533 dbSNP
rs368404730 1534 dbSNP
rs1278316105 1536 dbSNP
rs747488837 1537 dbSNP
rs779575171 1544 dbSNP
rs9140 1545 dbSNP
rs1261615418 1546 dbSNP
rs758011765 1548 dbSNP
rs777304682 1549 dbSNP
rs1349191242 1550 dbSNP
rs543418900 1551 dbSNP
rs563421536 1552 dbSNP
rs1281252067 1553 dbSNP
rs41265270 1554 dbSNP
rs149488494 1558 dbSNP
rs921810793 1562 dbSNP
rs931888410 1562 dbSNP
rs995944842 1569 dbSNP
rs1338575195 1574 dbSNP
rs4741030 1578 dbSNP
rs1299749577 1581 dbSNP
rs371495993 1586 dbSNP
rs890313791 1587 dbSNP
rs1004569305 1588 dbSNP
rs1015124645 1593 dbSNP
rs963067437 1596 dbSNP
rs1412349648 1610 dbSNP
rs1373806937 1611 dbSNP
rs902608185 1614 dbSNP
rs1281647414 1618 dbSNP
rs994917649 1626 dbSNP
rs1186440322 1627 dbSNP
rs1473415313 1639 dbSNP
rs1239519882 1645 dbSNP
rs1325884208 1647 dbSNP
rs1023849312 1651 dbSNP
rs1461008718 1655 dbSNP
rs1272357443 1657 dbSNP
rs1160479301 1663 dbSNP
rs1003674743 1664 dbSNP
rs1295034025 1669 dbSNP
rs1056643564 1670 dbSNP
rs1207247417 1675 dbSNP
rs969648107 1677 dbSNP
rs1233907164 1678 dbSNP
rs895352897 1680 dbSNP
rs548656327 1686 dbSNP
rs143937759 1687 dbSNP
rs1331591404 1689 dbSNP
rs951780013 1690 dbSNP
rs1352195338 1695 dbSNP
rs928098878 1696 dbSNP
rs1406412486 1700 dbSNP
rs1176615422 1701 dbSNP
rs1014590830 1702 dbSNP
rs1444377504 1704 dbSNP
rs1407660453 1705 dbSNP
rs369790915 1708 dbSNP
rs1239236225 1710 dbSNP
rs965768637 1711 dbSNP
rs74491476 1713 dbSNP
rs1456618626 1714 dbSNP
rs1250779469 1715 dbSNP
rs988234484 1721 dbSNP
rs72703240 1724 dbSNP
rs193099404 1727 dbSNP
rs946698444 1728 dbSNP
rs1040126326 1731 dbSNP
rs1243758552 1732 dbSNP
rs953265783 1743 dbSNP
rs1309719583 1744 dbSNP
rs990454824 1745 dbSNP
rs1393169166 1748 dbSNP
rs921820761 1751 dbSNP
rs773116483 1752 dbSNP
rs10959119 1755 dbSNP
rs746703928 1758 dbSNP
rs1337545649 1759 dbSNP
rs1351168825 1760 dbSNP
rs10959120 1767 dbSNP
rs1004708607 1770 dbSNP
rs923978468 1776 dbSNP
rs1036079369 1777 dbSNP
rs939410135 1779 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uguccggaggacgggaguCGGGu 5'
                            |||| 
Target 5' ------------------GCCCa 3'
 		1 - 5
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000259622.6 | 3UTR | gcccaguggaaccacca
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
48 hsa-miR-4656 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT135536 RAB5B RAB5B, member RAS oncogene family 2 2
MIRT168127 SOX4 SRY-box 4 2 2
MIRT301229 SH3BP4 SH3 domain binding protein 4 2 2
MIRT444362 TIMM8B translocase of inner mitochondrial membrane 8 homolog B 2 2
MIRT445909 SLC10A3 solute carrier family 10 member 3 2 2
MIRT447283 LAPTM5 lysosomal protein transmembrane 5 2 2
MIRT453797 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT456777 MTHFSD methenyltetrahydrofolate synthetase domain containing 2 2
MIRT459647 PCSK9 proprotein convertase subtilisin/kexin type 9 2 2
MIRT462333 BCL7B BCL tumor suppressor 7B 2 2
MIRT463535 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT465799 TMEM91 transmembrane protein 91 2 2
MIRT470647 POM121C POM121 transmembrane nucleoporin C 2 2
MIRT470837 PLXND1 plexin D1 2 2
MIRT471129 PHF19 PHD finger protein 19 2 2
MIRT483310 SLC35C2 solute carrier family 35 member C2 2 2
MIRT487264 CCNF cyclin F 2 2
MIRT491731 SEMA3F semaphorin 3F 2 2
MIRT497195 DRP2 dystrophin related protein 2 2 2
MIRT508384 SPTBN2 spectrin beta, non-erythrocytic 2 2 4
MIRT530496 FADS6 fatty acid desaturase 6 2 2
MIRT546995 PPP2CA protein phosphatase 2 catalytic subunit alpha 2 2
MIRT549790 KIAA0391 KIAA0391 2 2
MIRT560368 TAF8 TATA-box binding protein associated factor 8 2 2
MIRT566000 RNF4 ring finger protein 4 2 2
MIRT574035 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT574231 DMRT2 doublesex and mab-3 related transcription factor 2 2 2
MIRT576139 Hmox1 heme oxygenase 1 2 2
MIRT576640 Mill2 MHC I like leukocyte 2 1 1
MIRT609875 RAD54L2 RAD54 like 2 2 4
MIRT622651 POU2F3 POU class 2 homeobox 3 2 4
MIRT628848 FAM151B family with sequence similarity 151 member B 2 2
MIRT634252 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634672 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT649087 FBXO25 F-box protein 25 2 2
MIRT665019 ELK1 ELK1, ETS transcription factor 2 2
MIRT666939 PMEPA1 prostate transmembrane protein, androgen induced 1 2 2
MIRT668960 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT675802 MED28 mediator complex subunit 28 2 2
MIRT684022 FOLR1 folate receptor 1 2 2
MIRT696480 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT705894 ADCY9 adenylate cyclase 9 2 2
MIRT709434 ZSCAN25 zinc finger and SCAN domain containing 25 2 2
MIRT713572 SLC2A8 solute carrier family 2 member 8 2 2
MIRT716697 HLA-B major histocompatibility complex, class I, B 2 2
MIRT719735 SLC39A11 solute carrier family 39 member 11 2 2
MIRT724907 DAO D-amino acid oxidase 2 2
MIRT725321 NFASC neurofascin 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4656 Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4656 Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-mir-4656 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4656 Doxorubicin 31703 NSC123127 approved sensitive cell line (BAS)
hsa-miR-4656 Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-4656 Paclitaxel 36314 NSC125973 approved resistant cell line (A2780)
hsa-miR-4656 Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-4656 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-4656 Gemcitabine 60750 NSC613327 approved resistant cell line (MDA-231)
hsa-miR-4656 Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM16)

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